Citrus Sinensis ID: 039302
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | 2.2.26 [Sep-21-2011] | |||||||
| Q54ED4 | 482 | Glutamate-rich WD repeat- | yes | no | 0.855 | 0.850 | 0.462 | 1e-101 | |
| Q9BQ67 | 446 | Glutamate-rich WD repeat- | yes | no | 0.908 | 0.975 | 0.433 | 2e-93 | |
| Q1JQD2 | 446 | Glutamate-rich WD repeat- | yes | no | 0.901 | 0.968 | 0.428 | 3e-92 | |
| Q810D6 | 446 | Glutamate-rich WD repeat- | yes | no | 0.893 | 0.959 | 0.429 | 7e-92 | |
| Q5XI13 | 445 | Glutamate-rich WD repeat- | yes | no | 0.847 | 0.912 | 0.439 | 1e-91 | |
| Q9P783 | 480 | Ribosome assembly protein | yes | no | 0.824 | 0.822 | 0.415 | 8e-87 | |
| Q04225 | 511 | Ribosome assembly protein | yes | no | 0.803 | 0.753 | 0.352 | 4e-64 | |
| Q60973 | 425 | Histone-binding protein R | no | no | 0.668 | 0.752 | 0.331 | 2e-37 | |
| Q71UF4 | 425 | Histone-binding protein R | no | no | 0.668 | 0.752 | 0.331 | 3e-37 | |
| Q4R304 | 425 | Histone-binding protein R | N/A | no | 0.668 | 0.752 | 0.331 | 3e-37 |
| >sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/435 (46%), Positives = 271/435 (62%), Gaps = 25/435 (5%)
Query: 37 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYF 96
P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++P+T Y
Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYL 127
Query: 97 VAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGS 156
VAG+QA++ N + + K + + + + +D + + D+D D +
Sbjct: 128 VAGTQADEAKNNKVIIMKAKQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVD----- 182
Query: 157 GTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHG 216
P LQL + H G VNRIR+M Q +I A+W+D V +W+ +HL AL ++ETV
Sbjct: 183 --PELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETV---- 235
Query: 217 APQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF 276
AP+ +PL H EGYA+DW+P GRL +GDCN+ I + AS++TW D F
Sbjct: 236 APK--QTAPLHTISNHSIEGYALDWSPKIAGRLATGDCNNSIFV-TNASESTWKTDTQAF 292
Query: 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA 336
GH SVED+QWSP+E VFASCS+D + IWD R K A+ + KAH ADVNVISW+R
Sbjct: 293 KGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKPKPAI-TVKAHTADVNVISWSRNV 351
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396
LL SG DDG+F + DLR K +S V+ F+YH P+TSIEW+P+E S + VSS+D+Q+
Sbjct: 352 EYLLVSGCDDGSFRVWDLRAFK-DNSPVSDFKYHTGPITSIEWNPYEESQVIVSSSDDQV 410
Query: 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDL--PPQLLFIHQGQKDLKELHWHTQVPGMI 454
TIWD SLE+D EE T N +D PPQL FIHQGQ D+KE+HWH Q+P +
Sbjct: 411 TIWDFSLEEDTEE------FTNANANPDDDFQYPPQLFFIHQGQHDIKEVHWHPQIPHVA 464
Query: 455 VSTAADGFNILMPSN 469
+ST+ DGFNI SN
Sbjct: 465 ISTSIDGFNIFKSSN 479
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9BQ67|GRWD1_HUMAN Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 202/466 (43%), Positives = 263/466 (56%), Gaps = 31/466 (6%)
Query: 6 FAASRTQRRPKERTRTQKKGNGSSSSSIPSLPTKVWQPGVDK-LEEGEELQCDPTAYNSL 64
AA + +RR E + +G +SS P+ +V+ PG L EGEEL D AY
Sbjct: 1 MAARKGRRRTCETGEPMEAESGDTSSEGPA---QVYLPGRGPPLREGEELVMDEEAYVLY 57
Query: 65 HAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRE 124
H G PCLSFDI+RD LG R E P T Y AG+QAE N + + ++ N+ G
Sbjct: 58 HRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG---- 113
Query: 125 LVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRA--MSQNP 182
KP E SD +++ +DEE+ P L+L V H G +NR+R + + P
Sbjct: 114 ---TKPPPS------EGSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP 164
Query: 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242
+ W++ G V+V+ R L + E + +A + P+ F GH EG+A+DW+
Sbjct: 165 -VAGVWSEKGQVEVFALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWS 223
Query: 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302
P GRL++GDC IHLW P +W+VD PF+GH SVEDLQWSPTE+ VFASCS D
Sbjct: 224 PRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSAD 283
Query: 303 GNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359
+I IWD R S L + AH+ DVNVISW+R LL SG DDG I DLR K
Sbjct: 284 ASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKIWDLRQFKS 342
Query: 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTRE 419
G S VA F+ H PVTS+EW P + A S AD+Q+T WDL++E+D E A E
Sbjct: 343 G-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVERDPE------AGDVE 395
Query: 420 QVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNIL 465
DLP QLLF+HQG+ +LKELHWH Q PG++VSTA GF I
Sbjct: 396 ADPGLADLPQQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTIF 441
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Homo sapiens (taxid: 9606) |
| >sp|Q1JQD2|GRWD1_BOVIN Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 262/469 (55%), Gaps = 37/469 (7%)
Query: 6 FAASRTQRR---PKERTRTQKKGNGSSSSSIPSLPTKVWQPGVDK-LEEGEELQCDPTAY 61
AA + +RR P E T+ + GS + +V+ PG L EGEEL D AY
Sbjct: 1 MAALKGRRRTCEPGESMETESQETGSKGQA------QVYLPGRGPPLREGEELVMDEEAY 54
Query: 62 NSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGK 121
H G PCLSFDI+RD LG R E P T Y AG+QAE N + + ++ N+ G
Sbjct: 55 VLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESSQSNRLMMLRMHNLHGT 114
Query: 122 RRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRA--MS 179
+ P P E SD +++ DDEE+ P L+L V H G +NR+R +
Sbjct: 115 K----PPPP---------EGSDDEEEEDDEEDEEERKPQLELAMVPHYGGINRVRVSWLG 161
Query: 180 QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239
+ P + W++ G V+V+ R L + + + +A + P+ F GH EG+A+
Sbjct: 162 EEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFLRDEQTRMKPIFAFSGHMGEGFAL 220
Query: 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC 299
DW+P PGRL++GDC IHLW P +W+VD PF+GH SVEDLQWSPTE VFASC
Sbjct: 221 DWSPRVPGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTEDTVFASC 280
Query: 300 SVDGNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356
S D +I IWD R S L + AH+ DVNVI+W+ LL SG DDG + DLR
Sbjct: 281 SADASIRIWDIRAAPSKACMLTTATAHDGDVNVINWSHREPFLL-SGGDDGALKVWDLRQ 339
Query: 357 LKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAK 416
K G S VA F+ H PVTS+EW P + A S ADNQ+T WDL++E+D E A
Sbjct: 340 FKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPE------AG 392
Query: 417 TREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNIL 465
E DLP QLLF+HQG+ DLKELHWH Q PG++VSTA GF +
Sbjct: 393 DAETDPGLADLPQQLLFVHQGETDLKELHWHPQCPGVLVSTALSGFTVF 441
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Bos taurus (taxid: 9913) |
| >sp|Q810D6|GRWD1_MOUSE Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 197/459 (42%), Positives = 265/459 (57%), Gaps = 31/459 (6%)
Query: 16 KERTRTQKKGNGSSSSSI-PSL--PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGW 71
K R+RT + G + + P P++V+ PG L EGEEL D AY H G
Sbjct: 5 KGRSRTCETGEPMEAETCDPGTEGPSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGA 64
Query: 72 PCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPA 131
PCLSFDI+RD LG R E P + Y AG+QAE N + + ++ N+ G R
Sbjct: 65 PCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTR--------- 115
Query: 132 TGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRA--MSQNPHICASWA 189
+ E SD D++ +DEE+ P L+L V H G +NR+R + + P + W+
Sbjct: 116 ----PSPSEGSDDDEEDEDEEDEEEQKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWS 170
Query: 190 DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249
+ G V+V+ R L + + + +A + P+ F GH EG+A+DW+P PGRL
Sbjct: 171 EKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRL 230
Query: 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
++GDC +HLW P +WNVD PF+GH SVEDLQWSPTE VFASCS D +I IWD
Sbjct: 231 LTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWD 290
Query: 310 TRV--GKSALMSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366
R GK+ +++ AH+ DVNVISW+R LL SG DDG + DLR K G S VA
Sbjct: 291 IRAAPGKACMLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKVWDLRQFKSG-SPVAT 348
Query: 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426
F+ H PVTS+EW P + A S ADNQ+T WDL++E+D E + +T + A
Sbjct: 349 FKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESG---ETETDPGLAA--- 402
Query: 427 LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNIL 465
LP QLLF+HQG+ DLKELHWH Q PG+++STA GF +
Sbjct: 403 LPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTVF 441
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Mus musculus (taxid: 10090) |
| >sp|Q5XI13|GRWD1_RAT Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/435 (43%), Positives = 255/435 (58%), Gaps = 29/435 (6%)
Query: 37 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAY 95
P++V+ PG L EGEEL D AY H G PCLSFDI+RD LG R E P + Y
Sbjct: 29 PSQVYLPGRGPPLGEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLY 88
Query: 96 FVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGG 155
AG+QAE N + + ++ N+ G R P+ G +D D E + +++
Sbjct: 89 LCAGTQAESAQSNRLMMLRMHNLHGTR-----PPPSEGSDDEDDEDEEDEEERK------ 137
Query: 156 SGTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVA 213
P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A
Sbjct: 138 ---PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALA 193
Query: 214 GHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP 273
+ P+ F GH EG+A+DW+P PGRL++GDC IHLW P +WNVD
Sbjct: 194 IFLRDEQARVKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNVDQ 253
Query: 274 NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--GKSALMSF-KAHNADVNVI 330
PF+GH SVEDLQWSPTE VFASCS D +I IWD R GK+ +++ AH+ DVNVI
Sbjct: 254 RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVI 313
Query: 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390
SW+R LL SG DDGT + DLR K G S VA F+ H PVTS+EW P + A S
Sbjct: 314 SWSRREPFLL-SGGDDGTLKVWDLRQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAAS 371
Query: 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450
ADNQ+T WDL++E+D E + +T + A LP QLLF+HQG+ DLKELHWH Q
Sbjct: 372 GADNQITQWDLAVERDPESG---ETETDPGLAA---LPQQLLFVHQGETDLKELHWHPQC 425
Query: 451 PGMIVSTAADGFNIL 465
PG+++STA GF +
Sbjct: 426 PGVLISTALSGFTVF 440
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Rattus norvegicus (taxid: 10116) |
| >sp|Q9P783|RRB1_SCHPO Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 183/440 (41%), Positives = 257/440 (58%), Gaps = 45/440 (10%)
Query: 37 PTKV-WQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAY 95
P+K+ W PG K+ E+L DP+ Y LH + WP LSFDIL+D+LG R +P+ Y
Sbjct: 70 PSKIPWLPG-GKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMY 128
Query: 96 FVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGG 155
V GSQA + N + V K+S + + + E+ D+ D+SD EE+
Sbjct: 129 LVGGSQALDSNDNELTVMKLSQLYKTQHD---------------ENDDASDNSDVEED-- 171
Query: 156 SGTPILQLRKVAHQGCVNRIR-----AMSQNPHICASWADTGHVQVWDFRSHLNALAESE 210
PIL+ + ++ +G NR+R A S + AS+ +TG V +WD HL +L
Sbjct: 172 ---PILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPG 228
Query: 211 TVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN 270
+ SPL HK EGYA+DW+P L+SGD + I L S+ W
Sbjct: 229 VMVSRK-----ENSPLYTVNRHKTEGYALDWSPFEYS-LLSGDNANEIFL-TKYSNGGWQ 281
Query: 271 VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR-VGKSALMSFKAH-NADVN 328
D +PF+ H A+VEDLQWSP+E +VF+SCS DG IWD R K++ ++ AH DVN
Sbjct: 282 TDSSPFLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVN 341
Query: 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV---VAHFEYHKHPVTSIEWSPHEGS 385
V+SWN LLA+G+D+G +S+ DLR LK SV VA F++H+ P+ SIEW P+E S
Sbjct: 342 VLSWNTRVPNLLATGADNGVWSVWDLRSLKSSSSVATPVASFKWHRAPIYSIEWHPNEDS 401
Query: 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH 445
+ V ADNQ+++WDLS+E DEEE+ A+ +D+PPQL+FIH GQ+++KE+H
Sbjct: 402 VIGVVGADNQISLWDLSVELDEEEQDSRAAE------GLQDVPPQLMFIHMGQQEIKEMH 455
Query: 446 WHTQVPGMIVSTAADGFNIL 465
WH Q+PG IVSTA G N+
Sbjct: 456 WHRQIPGTIVSTAMTGINVF 475
|
Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/425 (35%), Positives = 237/425 (55%), Gaps = 40/425 (9%)
Query: 52 EELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIG 111
E L+ DPT Y LH ++ WPCL+ D++ DTLG R +P + +Q+ + N +
Sbjct: 109 EVLEADPTVYEMLHNVNMPWPCLTLDVIPDTLGSERRNYPQSILLTTATQSSRKKENELM 168
Query: 112 VFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGC 171
V +SN++ + L+ + D++ D E P+++ + +
Sbjct: 169 VLALSNLA---KTLLKDDNEGEDDEEDDEDD--------------VDPVIENENIPLRDT 211
Query: 172 VNRIR----AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
NR++ A+S + A+ ++ G V +++ A + G+ P+ + P+
Sbjct: 212 TNRLKVSPFAISNQEVLTATMSENGDVYIYNLAPQSKAFS----TPGYQIPKSAKR-PIH 266
Query: 228 KFGGHKD-EGYAIDWNP-VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF-IGHAASVE 284
H + EGY +DW+P + G L+SGDC+ I+ + + + W D PF + + S+E
Sbjct: 267 TVKNHGNVEGYGLDWSPLIKTGALLSGDCSGQIYFTQRHT-SRWVTDKQPFTVSNNKSIE 325
Query: 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLASG 343
D+QWS TES VFA+ DG I IWDTR K +S KA N DVNVISW+ LLASG
Sbjct: 326 DIQWSRTESTVFATAGCDGYIRIWDTRSKKHKPAISVKASNTDVNVISWSDKIGYLLASG 385
Query: 344 SDDGTFSIHDLRLL--KGGDSV--VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
D+GT+ + DLR D+V VA +++HK +TSI ++P + S +AV S DN +T+W
Sbjct: 386 DDNGTWGVWDLRQFTPSNADAVQPVAQYDFHKGAITSIAFNPLDESIVAVGSEDNTVTLW 445
Query: 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459
DLS+E D+EE + A+T+E +++PPQLLF+H QK++K++ WH Q+PG +VST
Sbjct: 446 DLSVEADDEEIKQQAAETKEL----QEIPPQLLFVH-WQKEVKDVKWHKQIPGCLVSTGT 500
Query: 460 DGFNI 464
DG N+
Sbjct: 501 DGLNV 505
|
Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q60973|RBBP7_MOUSE Histone-binding protein RBBP7 OS=Mus musculus GN=Rbbp7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 175/356 (49%), Gaps = 36/356 (10%)
Query: 116 SNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLR---KVAHQGCV 172
++ S ++ LV + ++DA ++S D SD E GG G+ ++ K+ H+G V
Sbjct: 69 THTSDEQNHLVVARVHIPNDDAQFDASHCD--SDKGEFGGFGSVTGKIECEIKINHEGEV 126
Query: 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH 232
NR R M QNPHI A+ + V V+D+ H S +P ++ GH
Sbjct: 127 NRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGEC-----------NPDLRLRGH 175
Query: 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--VDPNP-FIGHAASVEDLQWS 289
+ EGY + WN G L+S + + LW+ + VD F GH+A VED+ W
Sbjct: 176 QKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWH 235
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASCLLASGSDDG 347
+F S + D + IWDTR ++ S AH A+VN +S+N + +LA+GS D
Sbjct: 236 LLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 295
Query: 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407
T ++ DLR LK + FE HK + + WSPH + LA S D +L +WDLS + E
Sbjct: 296 TVALWDLRNLKLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-KIGE 351
Query: 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADGF 462
E+ AE ED PP+LLFIH G + + W+ P +I S + D
Sbjct: 352 EQSAE----------DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 397
|
Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Mus musculus (taxid: 10090) |
| >sp|Q71UF4|RBBP7_RAT Histone-binding protein RBBP7 OS=Rattus norvegicus GN=Rbbp7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 175/356 (49%), Gaps = 36/356 (10%)
Query: 116 SNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLR---KVAHQGCV 172
++ S ++ LV + ++DA ++S D SD E GG G+ ++ K+ H+G V
Sbjct: 69 THTSDEQNHLVVARVHIPNDDAQFDASHCD--SDKGEFGGFGSVTGKIECEIKINHEGEV 126
Query: 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH 232
NR R M QNPHI A+ + V V+D+ H S +P ++ GH
Sbjct: 127 NRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGEC-----------NPDLRLRGH 175
Query: 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--VDPNP-FIGHAASVEDLQWS 289
+ EGY + WN G L+S + + LW+ + VD F GH+A VED+ W
Sbjct: 176 QKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWH 235
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASCLLASGSDDG 347
+F S + D + IWDTR ++ S AH A+VN +S+N + +LA+GS D
Sbjct: 236 LLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 295
Query: 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407
T ++ DLR LK + FE HK + + WSPH + LA S D +L +WDLS + E
Sbjct: 296 TVALWDLRNLKLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-KIGE 351
Query: 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADGF 462
E+ AE ED PP+LLFIH G + + W+ P +I S + D
Sbjct: 352 EQSAE----------DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 397
|
Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Rattus norvegicus (taxid: 10116) |
| >sp|Q4R304|RBBP7_MACFA Histone-binding protein RBBP7 OS=Macaca fascicularis GN=RBBP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 175/356 (49%), Gaps = 36/356 (10%)
Query: 116 SNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLR---KVAHQGCV 172
++ S ++ LV + ++DA ++S D SD E GG G+ ++ K+ H+G V
Sbjct: 69 THTSDEQNHLVVARVHIPNDDAQFDASHCD--SDKGEFGGFGSVTGKIECEIKINHEGEV 126
Query: 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH 232
NR R M QNPHI A+ + V V+D+ H S +P ++ GH
Sbjct: 127 NRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGEC-----------NPDLRLRGH 175
Query: 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--VDPNP-FIGHAASVEDLQWS 289
+ EGY + WN G L+S + + LW+ + VD F GH+A VED+ W
Sbjct: 176 QKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWH 235
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASCLLASGSDDG 347
+F S + D + IWDTR ++ S AH A+VN +S+N + +LA+GS D
Sbjct: 236 LLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 295
Query: 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407
T ++ DLR LK + FE HK + + WSPH + LA S D +L +WDLS + E
Sbjct: 296 TVALWDLRNLKLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-KIGE 351
Query: 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADGF 462
E+ AE ED PP+LLFIH G + + W+ P +I S + D
Sbjct: 352 EQSAE----------DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 397
|
Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Macaca fascicularis (taxid: 9541) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| 225444932 | 474 | PREDICTED: glutamate-rich WD repeat-cont | 0.968 | 0.978 | 0.794 | 0.0 | |
| 255573609 | 476 | WD-repeat protein, putative [Ricinus com | 0.974 | 0.981 | 0.766 | 0.0 | |
| 449435854 | 475 | PREDICTED: glutamate-rich WD repeat-cont | 0.977 | 0.985 | 0.769 | 0.0 | |
| 449532697 | 465 | PREDICTED: glutamate-rich WD repeat-cont | 0.964 | 0.993 | 0.779 | 0.0 | |
| 356512379 | 475 | PREDICTED: glutamate-rich WD repeat-cont | 0.922 | 0.930 | 0.825 | 0.0 | |
| 356525166 | 472 | PREDICTED: LOW QUALITY PROTEIN: glutamat | 0.920 | 0.934 | 0.791 | 0.0 | |
| 224081134 | 443 | predicted protein [Populus trichocarpa] | 0.924 | 1.0 | 0.783 | 0.0 | |
| 297836302 | 470 | transducin family protein [Arabidopsis l | 0.935 | 0.953 | 0.746 | 0.0 | |
| 15224798 | 469 | transducin-like protein [Arabidopsis tha | 0.933 | 0.953 | 0.741 | 0.0 | |
| 82400122 | 464 | WD-40 repeat protein-like protein [Solan | 0.906 | 0.935 | 0.726 | 0.0 |
| >gi|225444932|ref|XP_002282252.1| PREDICTED: glutamate-rich WD repeat-containing protein 1 [Vitis vinifera] gi|297738673|emb|CBI27918.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/467 (79%), Positives = 418/467 (89%), Gaps = 3/467 (0%)
Query: 10 RTQRRPKERTRTQKKGNGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHI 69
+ ++ K + + KKG GSSS +PSLPTKVWQPGVDKLEEGEELQCDP+AYNSLHAFH+
Sbjct: 6 KNPKKAKRKNKGSKKGEGSSS--VPSLPTKVWQPGVDKLEEGEELQCDPSAYNSLHAFHV 63
Query: 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNK 129
GWPCLSFDI+RD+LGLVR+EFP+TAYFVAG+QAEK SWNSIG+FK+SNISGK+RELVP
Sbjct: 64 GWPCLSFDIVRDSLGLVRSEFPHTAYFVAGTQAEKASWNSIGIFKLSNISGKKRELVPTT 123
Query: 130 PATGDEDADGESSDSDDDSD-DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASW 188
+TGD+ D+ +EE+GGSGTPILQ+RKVAH+GCVNRIRAM+QNPHICASW
Sbjct: 124 KSTGDDSDMDGDGSDSDEDSENEEDGGSGTPILQMRKVAHEGCVNRIRAMTQNPHICASW 183
Query: 189 ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248
ADTGHVQVWDF SHLNALAESET A G+ +NQ+PLVKFGGHKDEGYAIDW+PV PG+
Sbjct: 184 ADTGHVQVWDFSSHLNALAESETDANQGSTPAINQAPLVKFGGHKDEGYAIDWSPVVPGK 243
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LV+GDC +CI+LWEP SDATW VD NPFIGH ASVEDLQWSPTE VFASCSVDGNIAIW
Sbjct: 244 LVTGDCKNCIYLWEPTSDATWKVDTNPFIGHTASVEDLQWSPTEVHVFASCSVDGNIAIW 303
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
DTR+G+S SFKAHNADVNV+SWNRLASC+LASGSDDGTFSI DLRLLK GDSVVAHFE
Sbjct: 304 DTRLGRSPAASFKAHNADVNVLSWNRLASCMLASGSDDGTFSIRDLRLLKDGDSVVAHFE 363
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP 428
YHKHP+TSIEWSPHE STLAVSS+DNQLTIWDLSLEKDEEEEAEF+A+T+EQVNAPEDLP
Sbjct: 364 YHKHPITSIEWSPHEASTLAVSSSDNQLTIWDLSLEKDEEEEAEFRAQTKEQVNAPEDLP 423
Query: 429 PQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQSTLP 475
PQLLF+HQGQKDLKELHWH+Q+PGMI+STAADGFN+LMPSNIQ+ LP
Sbjct: 424 PQLLFVHQGQKDLKELHWHSQIPGMIISTAADGFNVLMPSNIQNVLP 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573609|ref|XP_002527727.1| WD-repeat protein, putative [Ricinus communis] gi|223532868|gb|EEF34640.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/475 (76%), Positives = 407/475 (85%), Gaps = 8/475 (1%)
Query: 10 RTQRRPKERTRTQK--KGNGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAF 67
R+ + PK+ R K K +SSSSIP++PTKVWQPGVDKLEEGEEL+CDP+AYNSLH F
Sbjct: 3 RSIKNPKKAKRKNKGSKQGDASSSSIPTMPTKVWQPGVDKLEEGEELECDPSAYNSLHGF 62
Query: 68 HIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVP 127
HIGWPCLSFDI+ D LGL+R EFP+T YFVAG+QA+K S N+IG+FKVSNISGKRRELVP
Sbjct: 63 HIGWPCLSFDIVHDKLGLLRTEFPHTVYFVAGTQADKASSNTIGIFKVSNISGKRRELVP 122
Query: 128 NKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICAS 187
K GD + D +SSDSD+DS+DEE GGS P+LQ+R VAHQGCVNRIRAM+QNPHICAS
Sbjct: 123 AKTTDGDAEIDTDSSDSDEDSEDEEHGGSRAPVLQIRNVAHQGCVNRIRAMAQNPHICAS 182
Query: 188 WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247
WADTGHVQ+WDF SHLNAL+ESE G P +NQ+PLVKFGGHKDEGYAIDW+P G
Sbjct: 183 WADTGHVQIWDFSSHLNALSESEA-DRQGGPSAVNQAPLVKFGGHKDEGYAIDWSPRVTG 241
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307
RLVSGDC +CIHLWEP S ATWNV PF+GHAASVEDLQWSPTE VFASCSVDG+IAI
Sbjct: 242 RLVSGDCKNCIHLWEP-SGATWNVGSVPFVGHAASVEDLQWSPTEDAVFASCSVDGSIAI 300
Query: 308 WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL----KGGDSV 363
WD R+G++ +SFKAHNADVNVISWNRLAS +LASGSDDGTFSI DLRLL + SV
Sbjct: 301 WDIRLGRTPAISFKAHNADVNVISWNRLASVMLASGSDDGTFSIRDLRLLSQKQEEDKSV 360
Query: 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNA 423
VAHFEYHKHP+TSIEWSPHE S LAVSS+DNQLTIWDLSLEKDEEEEAEF+AKT EQVNA
Sbjct: 361 VAHFEYHKHPITSIEWSPHEASALAVSSSDNQLTIWDLSLEKDEEEEAEFRAKTNEQVNA 420
Query: 424 PEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQSTLPQDA 478
P DLPPQLLF+HQGQKDLKELHWH Q+PGMIVST+ADGFNILMPSNIQSTLP +
Sbjct: 421 PADLPPQLLFVHQGQKDLKELHWHDQIPGMIVSTSADGFNILMPSNIQSTLPSEG 475
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435854|ref|XP_004135709.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/469 (76%), Positives = 403/469 (85%), Gaps = 1/469 (0%)
Query: 10 RTQRRPKERTRTQKKGNGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHI 69
+ +++ K +++ G +SSSSIPS+P KVW+PGVDKLEEGEELQCDPTAYNSLHAF+I
Sbjct: 6 KNRKKAKRKSKGSSNGVAASSSSIPSVPAKVWRPGVDKLEEGEELQCDPTAYNSLHAFNI 65
Query: 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNK 129
WP LSFDI+RDTLGLVR EFP+T YFVAG+QAEK SWNSIG++K+SNISGKRREL+P+K
Sbjct: 66 SWPSLSFDIVRDTLGLVRTEFPHTIYFVAGTQAEKASWNSIGIYKISNISGKRRELLPSK 125
Query: 130 PATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWA 189
P T D D D +SSDSD+D + EE GG P+ QLRKVAH+GCVNRIRAM QNPHICASWA
Sbjct: 126 PVTDDTDMDSDSSDSDEDDEGEENGGYKLPVWQLRKVAHEGCVNRIRAMQQNPHICASWA 185
Query: 190 DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249
D GHVQ+WDF SHLN LA SE G V NQ+PL F HKDEGYA+DW+P+ PGRL
Sbjct: 186 DGGHVQIWDFSSHLNTLAGSEPTVSPGDSSVFNQAPLTLFK-HKDEGYALDWSPLVPGRL 244
Query: 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
+SGDC S IHLWEP+S +WNVD PF+GH+ASVEDLQWSPTE VF+SCS DGN+AIWD
Sbjct: 245 LSGDCKSFIHLWEPSSATSWNVDTAPFVGHSASVEDLQWSPTEPHVFSSCSADGNVAIWD 304
Query: 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369
R GKS SFKAHNADVNVISWNRLASC+LASGSDDGTFSIHDLRLLK GDSVVAHFEY
Sbjct: 305 VRSGKSPAASFKAHNADVNVISWNRLASCMLASGSDDGTFSIHDLRLLKEGDSVVAHFEY 364
Query: 370 HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP 429
HK P+TSIEWSPHE STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKT+EQVNAPEDLPP
Sbjct: 365 HKQPITSIEWSPHEASTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTQEQVNAPEDLPP 424
Query: 430 QLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQSTLPQDA 478
QLLF+HQGQ DLKELHWH Q+PGMIVSTAADGFNILMPSNIQ+TLP DA
Sbjct: 425 QLLFVHQGQNDLKELHWHAQIPGMIVSTAADGFNILMPSNIQTTLPSDA 473
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449532697|ref|XP_004173317.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/463 (77%), Positives = 400/463 (86%), Gaps = 1/463 (0%)
Query: 16 KERTRTQKKGNGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLS 75
+E+++ G +SSSSIPS+P KVW+PGVDKLEEGEELQCDPTAYNSLHAF+I WP LS
Sbjct: 2 QEKSKGSSNGVAASSSSIPSVPAKVWRPGVDKLEEGEELQCDPTAYNSLHAFNISWPSLS 61
Query: 76 FDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDE 135
FDI+RDTLGLVR EFP+T YFVAG+QAEK SWNSIG++K+SNISGKRREL+P+KP T D
Sbjct: 62 FDIVRDTLGLVRTEFPHTIYFVAGTQAEKASWNSIGIYKISNISGKRRELLPSKPVTDDT 121
Query: 136 DADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQ 195
D D +SSDSD+D + EE GG P+ QLRKVAH+GCVNRIRAM QNPHICASWAD GHVQ
Sbjct: 122 DMDSDSSDSDEDDEGEENGGYKLPVWQLRKVAHEGCVNRIRAMQQNPHICASWADGGHVQ 181
Query: 196 VWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255
+WDF SHLN LA SE G V NQ+PL F HKDEGYA+DW+P+ PGRL+SGDC
Sbjct: 182 IWDFSSHLNTLAGSEPTVSPGDSSVFNQAPLTLFK-HKDEGYALDWSPLVPGRLLSGDCK 240
Query: 256 SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
S IHLWEP+S +WNVD PF+GH+ASVEDLQWSPTE VF+SCS DGN+AIWD R GKS
Sbjct: 241 SFIHLWEPSSATSWNVDTAPFVGHSASVEDLQWSPTEPHVFSSCSADGNVAIWDVRSGKS 300
Query: 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375
SFKAHNADVNVISWNRLASC+LASGSDDGTFSIHDLRLLK GDSVVAHFEYHK P+T
Sbjct: 301 PAASFKAHNADVNVISWNRLASCMLASGSDDGTFSIHDLRLLKEGDSVVAHFEYHKQPIT 360
Query: 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435
SIEWSPHE STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKT+EQVNAPEDLPPQLLF+H
Sbjct: 361 SIEWSPHEASTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTQEQVNAPEDLPPQLLFVH 420
Query: 436 QGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQSTLPQDA 478
QGQ DLKELHWH Q+PGMIVSTAADGFNILMPSNIQ+TLP DA
Sbjct: 421 QGQNDLKELHWHAQIPGMIVSTAADGFNILMPSNIQTTLPSDA 463
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512379|ref|XP_003524897.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/447 (82%), Positives = 393/447 (87%), Gaps = 5/447 (1%)
Query: 34 PSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYT 93
P +P KVWQPGVDKLEEGEELQCDP+AYNSLHAFHIGWPCLSFDILRD+LGLVR EFP+T
Sbjct: 30 PEIPAKVWQPGVDKLEEGEELQCDPSAYNSLHAFHIGWPCLSFDILRDSLGLVRKEFPHT 89
Query: 94 AYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEE 153
YF+AG+QAEKPSWNSIG+FKVSNI+GKRRE VP K T D + DGE SDSDDDS+DEE
Sbjct: 90 VYFMAGTQAEKPSWNSIGIFKVSNITGKRREPVP-KLGTDDTEMDGEDSDSDDDSEDEEG 148
Query: 154 GGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVA 213
G G P LQLRKVAHQGCVNRIR+M QNPHICA+WADTGHVQVWD SHLNALAESET
Sbjct: 149 GAQG-PSLQLRKVAHQGCVNRIRSMPQNPHICAAWADTGHVQVWDLNSHLNALAESETEG 207
Query: 214 GHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP 273
G V NQ PL KF HKDEGYAIDW+P+ PGRL SGDCN+CI+LWEP S TWNVD
Sbjct: 208 VQGVAAVFNQDPLYKFK-HKDEGYAIDWSPLVPGRLASGDCNNCIYLWEPTSAGTWNVDN 266
Query: 274 NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333
PF GH ASVEDLQWSPTE DVFASCSVDGNIAIWDTR+GKS SFKAHNADVNV+SWN
Sbjct: 267 APFTGHTASVEDLQWSPTEPDVFASCSVDGNIAIWDTRLGKSPAASFKAHNADVNVMSWN 326
Query: 334 RLASCLLASGSDDGTFSIHDLRLLK--GGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391
RLASC+LASGSDDGT SI DLRLLK GDSVVAHFEYHKHP+TSIEWSPHE S+LAVSS
Sbjct: 327 RLASCMLASGSDDGTISIRDLRLLKVQEGDSVVAHFEYHKHPITSIEWSPHEASSLAVSS 386
Query: 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVP 451
+DNQLTIWDLSLEKDEEEEAEFKAKT+EQVNAPEDLPPQLLFIHQGQKDLKELHWH Q+P
Sbjct: 387 SDNQLTIWDLSLEKDEEEEAEFKAKTKEQVNAPEDLPPQLLFIHQGQKDLKELHWHAQIP 446
Query: 452 GMIVSTAADGFNILMPSNIQSTLPQDA 478
GMIVSTAADGFNILMPSNIQSTLP D
Sbjct: 447 GMIVSTAADGFNILMPSNIQSTLPSDG 473
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525166|ref|XP_003531198.1| PREDICTED: LOW QUALITY PROTEIN: glutamate-rich WD repeat-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/450 (79%), Positives = 385/450 (85%), Gaps = 9/450 (2%)
Query: 34 PSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYT 93
P +P KVWQPGVDKLEEGEELQCDP+AYNSLHAFHIGWPCLSFDILRD+LGLVR EFP+T
Sbjct: 25 PEIPAKVWQPGVDKLEEGEELQCDPSAYNSLHAFHIGWPCLSFDILRDSLGLVRTEFPHT 84
Query: 94 AYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEE 153
YF+AG+QAEKPSWNSIG+FKVSNI+GKRRE VP G +D + + DSD D D EEE
Sbjct: 85 VYFMAGTQAEKPSWNSIGIFKVSNITGKRREPVPK---LGTDDTEMDGEDSDSDDDSEEE 141
Query: 154 GGSGTPI-----LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAE 208
LQLRKVAHQGCVNRIR+M QNPHICA+WADTGHVQVWD SHLN LAE
Sbjct: 142 DEGVLTFXFFSHLQLRKVAHQGCVNRIRSMPQNPHICAAWADTGHVQVWDLNSHLNVLAE 201
Query: 209 SETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT 268
+ET G V NQ PL KF HKDEGYAIDW+P+ PG+L SGDCN+CI+LWEP S T
Sbjct: 202 TETEGVQGVAAVFNQDPLYKFK-HKDEGYAIDWSPLVPGKLASGDCNNCIYLWEPTSAGT 260
Query: 269 WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328
WNVD PFIGH ASVEDLQWSPTES VFASCSVDGNIAIWDTR+GKS SFKAHNADVN
Sbjct: 261 WNVDNAPFIGHTASVEDLQWSPTESHVFASCSVDGNIAIWDTRLGKSPAASFKAHNADVN 320
Query: 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388
V+SWNRLASC+LASGSDDGT SI DLRLLK GDSVVAHFEYHKHP+TSIEWSPHE S+LA
Sbjct: 321 VMSWNRLASCMLASGSDDGTISIRDLRLLKEGDSVVAHFEYHKHPITSIEWSPHEASSLA 380
Query: 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448
VSS+DNQLTIWDLSLEKDEEEEAEFKAKT+EQVNAPEDLPPQLLFIHQGQKDLKELHWHT
Sbjct: 381 VSSSDNQLTIWDLSLEKDEEEEAEFKAKTKEQVNAPEDLPPQLLFIHQGQKDLKELHWHT 440
Query: 449 QVPGMIVSTAADGFNILMPSNIQSTLPQDA 478
Q+PGMIVSTA DGFN+LMPSNIQSTLP +
Sbjct: 441 QIPGMIVSTAEDGFNVLMPSNIQSTLPSNG 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081134|ref|XP_002306305.1| predicted protein [Populus trichocarpa] gi|222855754|gb|EEE93301.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/444 (78%), Positives = 391/444 (88%), Gaps = 1/444 (0%)
Query: 36 LPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAY 95
+PTKVWQPGVDKL E EEL+CDPTAYNSLHAFHIGWPCLSFD++RD+LGL+R +FP+T Y
Sbjct: 1 MPTKVWQPGVDKLGEEEELECDPTAYNSLHAFHIGWPCLSFDVVRDSLGLLRTDFPHTVY 60
Query: 96 FVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGG 155
FVAG+QAEKP WNSIG+FKVSN+SGK+RELVP+K GD D D ++SDSD+DS+DEEEGG
Sbjct: 61 FVAGTQAEKPDWNSIGIFKVSNVSGKQRELVPSKTTAGDSDMDTDNSDSDEDSEDEEEGG 120
Query: 156 SGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGH 215
S TP+LQLRKVAH+GC+NRIRAM+QNPHICASW+D G+VQ+WDF +HLNALAESET
Sbjct: 121 SATPVLQLRKVAHRGCINRIRAMTQNPHICASWSDAGYVQIWDFSTHLNALAESETEVPR 180
Query: 216 GAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNP 275
GA V NQ+PL F GHKDEGYAIDW+P GRLV+GDC +CIHLWE S ATWNVD P
Sbjct: 181 GASSVFNQAPLFNFKGHKDEGYAIDWSPRVAGRLVTGDCKNCIHLWESTSGATWNVDATP 240
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRL 335
F GH ASVEDLQWS TE VFASCSVDG+IAIWD R+GKS + FKAHNADVNVISWNRL
Sbjct: 241 FTGHTASVEDLQWSSTEDHVFASCSVDGHIAIWDARLGKSPAIYFKAHNADVNVISWNRL 300
Query: 336 ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395
AS +LASGSDDGTFSI DLRLL SV+AHF+YHKHP+TSIEWSPHE STL+VSS+DNQ
Sbjct: 301 ASVMLASGSDDGTFSIRDLRLLS-PKSVLAHFQYHKHPITSIEWSPHEASTLSVSSSDNQ 359
Query: 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455
LTIWDLSLEKDEEEEAEFKAKT+EQVNAP DLPPQLLF+HQGQKDLKELHWH Q+PGMIV
Sbjct: 360 LTIWDLSLEKDEEEEAEFKAKTKEQVNAPADLPPQLLFVHQGQKDLKELHWHAQIPGMIV 419
Query: 456 STAADGFNILMPSNIQSTLPQDAV 479
STA+DGFNILMPSNIQSTLP + V
Sbjct: 420 STASDGFNILMPSNIQSTLPSEGV 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836302|ref|XP_002886033.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297331873|gb|EFH62292.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/449 (74%), Positives = 380/449 (84%), Gaps = 1/449 (0%)
Query: 29 SSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRN 88
SSS IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDIL D LGL R
Sbjct: 20 SSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRT 79
Query: 89 EFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148
EFP+T Y VAG+QAEK + NSIG+FK++N+SGKRR++VP A GD+ D + D D
Sbjct: 80 EFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVPKTLANGDDMEDEDDDDDSDSD 139
Query: 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAE 208
DD+ + S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD SHLNALAE
Sbjct: 140 DDDGDEASKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAE 199
Query: 209 SETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT 268
SET G VLNQ+PLV F GHKDEGYAIDW+P GRL+SGDC S IHLWEPAS +
Sbjct: 200 SETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GS 258
Query: 269 WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328
W VDP PF GH ASVEDLQWSP E +VFASCSVDG++A+WD R+GKS +SFKAHNADVN
Sbjct: 259 WAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVN 318
Query: 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388
VISWNRLASC+LASGSDDGTFSI DLRL+KGGD+VVAHFEYHKHP+TSIEWS HE STLA
Sbjct: 319 VISWNRLASCMLASGSDDGTFSIRDLRLIKGGDAVVAHFEYHKHPITSIEWSAHEASTLA 378
Query: 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448
V+S DNQLTIWDLSLEKDEEEEAEFKA+T+E VN P+DLPPQLLF+HQGQKDLKELHWH
Sbjct: 379 VTSGDNQLTIWDLSLEKDEEEEAEFKAQTKELVNTPQDLPPQLLFVHQGQKDLKELHWHN 438
Query: 449 QVPGMIVSTAADGFNILMPSNIQSTLPQD 477
Q+PGMI+STAADGFNILMP NIQ+TLP +
Sbjct: 439 QIPGMIISTAADGFNILMPYNIQNTLPSE 467
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224798|ref|NP_179544.1| transducin-like protein [Arabidopsis thaliana] gi|13877611|gb|AAK43883.1|AF370506_1 putative WD-40 repeat protein [Arabidopsis thaliana] gi|4191784|gb|AAD10153.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|22136272|gb|AAM91214.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|330251799|gb|AEC06893.1| transducin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/449 (74%), Positives = 377/449 (83%), Gaps = 2/449 (0%)
Query: 29 SSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRN 88
SSS IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDIL D LGL R
Sbjct: 20 SSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRT 79
Query: 89 EFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148
EFP+T Y VAG+QAEK + NSIG+FK++N+SGKRR++VP K ED D + D D
Sbjct: 80 EFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVP-KTFGNGEDEDEDDEDDSDSD 138
Query: 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAE 208
DD+ + S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD SHLNALAE
Sbjct: 139 DDDGDEASKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAE 198
Query: 209 SETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT 268
SET G VLNQ+PLV F GHKDEGYAIDW+P GRL+SGDC S IHLWEPAS +
Sbjct: 199 SETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GS 257
Query: 269 WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328
W VDP PF GH ASVEDLQWSP E +VFASCSVDG++A+WD R+GKS +SFKAHNADVN
Sbjct: 258 WAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVN 317
Query: 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388
VISWNRLASC+LASGSDDGTFSI DLRL+KGGD+VVAHFEYHKHP+TSIEWS HE STLA
Sbjct: 318 VISWNRLASCMLASGSDDGTFSIRDLRLIKGGDAVVAHFEYHKHPITSIEWSAHEASTLA 377
Query: 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448
V+S DNQLTIWDLSLEKDEEEEAEF A+T+E VN P+DLPPQLLF+HQGQKDLKELHWH
Sbjct: 378 VTSGDNQLTIWDLSLEKDEEEEAEFNAQTKELVNTPQDLPPQLLFVHQGQKDLKELHWHN 437
Query: 449 QVPGMIVSTAADGFNILMPSNIQSTLPQD 477
Q+PGMI+STA DGFNILMP NIQ+TLP +
Sbjct: 438 QIPGMIISTAGDGFNILMPYNIQNTLPSE 466
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|82400122|gb|ABB72800.1| WD-40 repeat protein-like protein [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/457 (72%), Positives = 376/457 (82%), Gaps = 23/457 (5%)
Query: 29 SSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRN 88
SS S+PSLP KVWQPGVDKLEEGEELQCD +AYNSLHAFHIGWPCLSFD+LRD+LGLVR
Sbjct: 23 SSDSVPSLPAKVWQPGVDKLEEGEELQCDASAYNSLHAFHIGWPCLSFDVLRDSLGLVRT 82
Query: 89 EFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148
EFP++ Y VAG+QAEK SWNSIG+FK+SNISGKRR+LVP+K TGDE++ + + DS
Sbjct: 83 EFPHSVYCVAGTQAEKSSWNSIGIFKLSNISGKRRDLVPDK--TGDENS--DMDSNSSDS 138
Query: 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAE 208
D+EEE GSGTP+LQL KV H+GCVNRIRAM+QNPHI ASW DTGHVQ
Sbjct: 139 DEEEEAGSGTPVLQLHKVFHEGCVNRIRAMTQNPHIVASWGDTGHVQ------------N 186
Query: 209 SETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS-------GDCNSCIHLW 261
E+ HGA V NQ+PL KFGGHKDEGYAIDW+P PG+LVS GDC +CIHLW
Sbjct: 187 PESDLSHGASAVSNQAPLFKFGGHKDEGYAIDWSPRVPGKLVSDVLHISAGDCRNCIHLW 246
Query: 262 EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321
EP S ATWNV +IGH ASVEDLQWSPTE VFASCSVD NI IWDTR+ +
Sbjct: 247 EPTSGATWNVSAKSYIGHTASVEDLQWSPTEDTVFASCSVDRNIIIWDTRMDNPLAATIT 306
Query: 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381
AH ADVNVISWN+LASC+LASGSDDGTFSI DLR++K GDSVVAHF+YHKHP+TSIEWSP
Sbjct: 307 AHKADVNVISWNKLASCMLASGSDDGTFSIQDLRMVKDGDSVVAHFDYHKHPITSIEWSP 366
Query: 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDL 441
HE STLAVSS+DNQLTIWDLSLE+DEEEEAEFK K +EQVNAP DLPPQLLF+HQGQKDL
Sbjct: 367 HEASTLAVSSSDNQLTIWDLSLERDEEEEAEFKTKMKEQVNAPTDLPPQLLFVHQGQKDL 426
Query: 442 KELHWHTQVPGMIVSTAADGFNILMPSNIQSTLPQDA 478
KELHWH+Q+PGM+VSTAADGFNILMPSNI++ +P +
Sbjct: 427 KELHWHSQIPGMVVSTAADGFNILMPSNIENAIPANV 463
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| TAIR|locus:2050388 | 469 | AT2G19540 "AT2G19540" [Arabido | 0.962 | 0.982 | 0.676 | 5.9e-176 | |
| DICTYBASE|DDB_G0291566 | 482 | grwd1 "glutamate-rich WD repea | 0.855 | 0.850 | 0.448 | 1.1e-94 | |
| RGD|1310649 | 445 | Grwd1 "glutamate-rich WD repea | 0.620 | 0.667 | 0.463 | 1.2e-87 | |
| UNIPROTKB|Q9BQ67 | 446 | GRWD1 "Glutamate-rich WD repea | 0.620 | 0.665 | 0.459 | 6.4e-87 | |
| UNIPROTKB|F1RL85 | 445 | GRWD1 "Uncharacterized protein | 0.620 | 0.667 | 0.459 | 1e-86 | |
| FB|FBgn0022288 | 456 | l(2)09851 "lethal (2) 09851" [ | 0.855 | 0.899 | 0.425 | 1.6e-86 | |
| ZFIN|ZDB-GENE-030131-9844 | 452 | grwd1 "glutamate-rich WD repea | 0.841 | 0.891 | 0.418 | 1.6e-86 | |
| UNIPROTKB|Q1JQD2 | 446 | GRWD1 "Glutamate-rich WD repea | 0.620 | 0.665 | 0.453 | 4.4e-86 | |
| UNIPROTKB|E2RBY0 | 440 | GRWD1 "Uncharacterized protein | 0.620 | 0.675 | 0.453 | 1.2e-85 | |
| MGI|MGI:2141989 | 446 | Grwd1 "glutamate-rich WD repea | 0.891 | 0.957 | 0.412 | 2.7e-84 |
| TAIR|locus:2050388 AT2G19540 "AT2G19540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1709 (606.7 bits), Expect = 5.9e-176, P = 5.9e-176
Identities = 314/464 (67%), Positives = 358/464 (77%)
Query: 14 RPKERTRTQKKGNGXXXXXIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPC 73
+ K + + +KK IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPC
Sbjct: 6 KTKAKRKNKKKAEASSSE-IPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPC 64
Query: 74 LSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATX 133
LSFDIL D LGL R EFP+T Y VAG+QAEK + NSIG+FK++N+SGKRR++VP K
Sbjct: 65 LSFDILGDKLGLNRTEFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVP-KTFGN 123
Query: 134 XXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGH 193
TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GH
Sbjct: 124 GEDEDEDDEDDSDSDDDDGDEASKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGH 183
Query: 194 VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253
VQVWD SHLNALAESET G VLNQ+PLV F GHKDEGYAIDW+P GRL+SGD
Sbjct: 184 VQVWDMSSHLNALAESETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGD 243
Query: 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313
C S IHLWEPAS +W VDP PF GH ASVEDLQWSP E +VFASCSVDG++A+WD R+G
Sbjct: 244 CKSMIHLWEPAS-GSWAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLG 302
Query: 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373
KS +SFKAHNADVNVISWNRLASC+LASGSDDGTFSI DLRL+KGGD+VVAHFEYHKHP
Sbjct: 303 KSPALSFKAHNADVNVISWNRLASCMLASGSDDGTFSIRDLRLIKGGDAVVAHFEYHKHP 362
Query: 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLF 433
+TSIEWS HE STLAV+S DNQLTIWDLSL T+E VN P+DLPPQLLF
Sbjct: 363 ITSIEWSAHEASTLAVTSGDNQLTIWDLSLEKDEEEEAEFNAQTKELVNTPQDLPPQLLF 422
Query: 434 IHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQSTLPQD 477
+HQGQKDLKELHWH Q+PGMI+STA DGFNILMP NIQ+TLP +
Sbjct: 423 VHQGQKDLKELHWHNQIPGMIISTAGDGFNILMPYNIQNTLPSE 466
|
|
| DICTYBASE|DDB_G0291566 grwd1 "glutamate-rich WD repeat-containing protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 195/435 (44%), Positives = 257/435 (59%)
Query: 37 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYF 96
P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++P+T Y
Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYL 127
Query: 97 VAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXX 156
VAG+QA++ N + + K ++L K
Sbjct: 128 VAGTQADEAKNNKVIIMKA-------KQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKD 180
Query: 157 XTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHG 216
P LQL + H G VNRIR+M Q +I A+W+D V +W+ +HL AL ++ETVA
Sbjct: 181 VDPELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETVA--- 236
Query: 217 APQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF 276
P+ +PL H EGYA+DW+P GRL +GDCN+ I + AS++TW D F
Sbjct: 237 -PK--QTAPLHTISNHSIEGYALDWSPKIAGRLATGDCNNSIFVTN-ASESTWKTDTQAF 292
Query: 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA 336
GH SVED+QWSP+E VFASCS+D + IWD R K A+ + KAH ADVNVISW+R
Sbjct: 293 KGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKPKPAI-TVKAHTADVNVISWSRNV 351
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396
LL SG DDG+F + DLR K +S V+ F+YH P+TSIEW+P+E S + VSS+D+Q+
Sbjct: 352 EYLLVSGCDDGSFRVWDLRAFKD-NSPVSDFKYHTGPITSIEWNPYEESQVIVSSSDDQV 410
Query: 397 TIWDLSLXXXXXXXXXXXXXTREQVNAPEDL--PPQLLFIHQGQKDLKELHWHTQVPGMI 454
TIWD SL T N +D PPQL FIHQGQ D+KE+HWH Q+P +
Sbjct: 411 TIWDFSLEEDTEEF------TNANANPDDDFQYPPQLFFIHQGQHDIKEVHWHPQIPHVA 464
Query: 455 VSTAADGFNILMPSN 469
+ST+ DGFNI SN
Sbjct: 465 ISTSIDGFNIFKSSN 479
|
|
| RGD|1310649 Grwd1 "glutamate-rich WD repeat containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 144/311 (46%), Positives = 188/311 (60%)
Query: 159 PILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHG 216
P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A
Sbjct: 138 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFL 196
Query: 217 APQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF 276
+ P+ F GH EG+A+DW+P PGRL++GDC IHLW P +WNVD PF
Sbjct: 197 RDEQARVKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNVDQRPF 256
Query: 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--GKSALMSFKA-HNADVNVISWN 333
+GH SVEDLQWSPTE VFASCS D +I IWD R GK+ +++ A H+ DVNVISW+
Sbjct: 257 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWS 316
Query: 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393
R LL SG DDGT + DLR K G S VA F+ H PVTS+EW P + A S AD
Sbjct: 317 RREPFLL-SGGDDGTLKVWDLRQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGAD 374
Query: 394 NQLTIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453
NQ+T WDL++ T + A LP QLLF+HQG+ DLKELHWH Q PG+
Sbjct: 375 NQITQWDLAVERDPESGETE---TDPGLAA---LPQQLLFVHQGETDLKELHWHPQCPGV 428
Query: 454 IVSTAADGFNI 464
++STA GF +
Sbjct: 429 LISTALSGFTV 439
|
|
| UNIPROTKB|Q9BQ67 GRWD1 "Glutamate-rich WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
Identities = 143/311 (45%), Positives = 183/311 (58%)
Query: 159 PILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHG 216
P L+L V H G +NR+R + + P + W++ G V+V+ R L + E + +A
Sbjct: 139 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVEEPQALAAFL 197
Query: 217 APQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF 276
+ P+ F GH EG+A+DW+P GRL++GDC IHLW P +W+VD PF
Sbjct: 198 RDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 257
Query: 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA---LMSFKAHNADVNVISWN 333
+GH SVEDLQWSPTE+ VFASCS D +I IWD R S L + AH+ DVNVISW+
Sbjct: 258 VGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWS 317
Query: 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393
R LL SG DDG I DLR K G S VA F+ H PVTS+EW P + A S AD
Sbjct: 318 RREPFLL-SGGDDGALKIWDLRQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGAD 375
Query: 394 NQLTIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453
+Q+T WDL++ E DLP QLLF+HQG+ +LKELHWH Q PG+
Sbjct: 376 HQITQWDLAVERDPEAGDV------EADPGLADLPQQLLFVHQGETELKELHWHPQCPGL 429
Query: 454 IVSTAADGFNI 464
+VSTA GF I
Sbjct: 430 LVSTALSGFTI 440
|
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| UNIPROTKB|F1RL85 GRWD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 143/311 (45%), Positives = 182/311 (58%)
Query: 159 PILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHG 216
P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A
Sbjct: 138 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFL 196
Query: 217 APQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF 276
+ P+ F GH EG+A+DW+P PGRL++GDC IHLW P +W+VD PF
Sbjct: 197 RDEQARVKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDSGSWHVDQRPF 256
Query: 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA---LMSFKAHNADVNVISWN 333
+GH SVEDLQWSPTE VFASCS D +I IWD R S L + AHN DVNVISW+
Sbjct: 257 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTPAAHNGDVNVISWS 316
Query: 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393
R LL SG DDG + DLR K G S VA F+ H PVTS+EW P + A S AD
Sbjct: 317 RQEPFLL-SGGDDGALKVWDLRQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGAD 374
Query: 394 NQLTIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453
NQ+T WDL++ E LP QLLF+HQG+ DLKELHWH Q PG+
Sbjct: 375 NQITQWDLAVERDPEAGDT------ETDPGLVGLPQQLLFVHQGETDLKELHWHPQCPGV 428
Query: 454 IVSTAADGFNI 464
+VSTA GF +
Sbjct: 429 LVSTALSGFTV 439
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| FB|FBgn0022288 l(2)09851 "lethal (2) 09851" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 185/435 (42%), Positives = 243/435 (55%)
Query: 34 PSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYT 93
P P +V+ PG KL + EEL CD +AY LH G PCLSFD++ D LG R FP T
Sbjct: 37 PKAPKEVYLPGT-KLADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPMT 95
Query: 94 AYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXX 153
AY VAG+QA + N++ V K+SN+ +K T
Sbjct: 96 AYIVAGTQASRAHVNNLIVMKMSNL---------HK--TQDNDGDEDEELEDDQDDVTDR 144
Query: 154 XXXXTPILQLRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETV 212
P + V HQGCVNR+RA N ASW++ G V +WD L A+ ++
Sbjct: 145 EELKKPQMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVENAQLA 204
Query: 213 AGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD 272
+ + P+ FGGH+ EG+AIDW+P A G L +GDC IH+W P D TW VD
Sbjct: 205 KQYEQSEA---RPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVWTPVEDGTWKVD 261
Query: 273 PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG--KSALMSFK-AHNADVNV 329
P GH+ SVEDLQWSP E V ASCSVD I IWD R K+ +++ + AH +DVNV
Sbjct: 262 QRPLAGHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCRASPQKACMLTCEDAHQSDVNV 321
Query: 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389
ISWNR +ASG DDG I DLR + +A F++H +T++EWSP E + LA
Sbjct: 322 ISWNRNEP-FIASGGDDGYLHIWDLRQFQS-KKPIATFKHHTDHITTVEWSPAEATVLAS 379
Query: 390 SSADNQLTIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449
D+Q+ +WDL++ + +N LPPQLLFIHQGQK++KELHWH Q
Sbjct: 380 GGDDDQIALWDLAVEKDIDQAVDPAQ-NEDVLNK---LPPQLLFIHQGQKEIKELHWHPQ 435
Query: 450 VPGMIVSTAADGFNI 464
+PG+++STA GFNI
Sbjct: 436 LPGVLLSTAHSGFNI 450
|
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| ZFIN|ZDB-GENE-030131-9844 grwd1 "glutamate-rich WD repeat containing 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 179/428 (41%), Positives = 247/428 (57%)
Query: 39 KVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVA 98
KV+ PG+ L+ GEEL+ D +AY H G PCLSFD++ D G R +FP + A
Sbjct: 42 KVYVPGLQPLQPGEELEMDHSAYRMYHECQTGAPCLSFDVVLDGEGDRREQFPLSMVLCA 101
Query: 99 GSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXT 158
G+QA+ N + V ++ N+ G ++ +K +
Sbjct: 102 GTQADTALSNRLIVMRMHNLQGTEKKKDEDKSSDEESDEDEDDEDEDKK----------- 150
Query: 159 PILQLRKVAHQGCVNRIRAMSQNPH-ICASWADTGHVQVWDFRSHLNALAESETVAGHGA 217
P L+L + H G +NR+R + + A W++ G V+++D R L A+ S ++
Sbjct: 151 PQLELAMMPHYGGINRVRVTQRGEQTLAAVWSEKGQVEIFDLRLQLEAVHNSTAMSAF-I 209
Query: 218 PQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFI 277
Q +PL F GH EG+AIDW+P PGR+VSGDC IH+WEP TW +D PF
Sbjct: 210 KQEKEATPLFSFAGHMSEGFAIDWSPKVPGRMVSGDCKKNIHVWEPQEGGTWKIDQRPFS 269
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNADVNVISWNRLA 336
H+ SVEDLQWSPTE+ VFASCSVD +I IWD R ++++S +AH++DVNVISWNR
Sbjct: 270 SHSKSVEDLQWSPTEATVFASCSVDQSIRIWDIRAPPNSMLSANEAHSSDVNVISWNRTE 329
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396
+L SG DDG + DLR + G V A F+ H PVTS++WSP + S A S AD+ +
Sbjct: 330 PFIL-SGGDDGLLKVWDLRQFQSGRPV-ASFKQHSAPVTSVQWSPVDSSVFAASGADDVI 387
Query: 397 TIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456
+ WDLS+ E V + LPPQLLF+HQGQK++KELHWH Q+PG+++S
Sbjct: 388 SQWDLSVESCDMGGQA------EDV---KQLPPQLLFLHQGQKEVKELHWHPQIPGVLIS 438
Query: 457 TAADGFNI 464
TA GFNI
Sbjct: 439 TALSGFNI 446
|
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| UNIPROTKB|Q1JQD2 GRWD1 "Glutamate-rich WD repeat-containing protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 141/311 (45%), Positives = 182/311 (58%)
Query: 159 PILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHG 216
P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A
Sbjct: 139 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFL 197
Query: 217 APQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF 276
+ P+ F GH EG+A+DW+P PGRL++GDC IHLW P +W+VD PF
Sbjct: 198 RDEQTRMKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 257
Query: 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA---LMSFKAHNADVNVISWN 333
+GH SVEDLQWSPTE VFASCS D +I IWD R S L + AH+ DVNVI+W+
Sbjct: 258 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINWS 317
Query: 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393
LL SG DDG + DLR K G S VA F+ H PVTS+EW P + A S AD
Sbjct: 318 HREPFLL-SGGDDGALKVWDLRQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGAD 375
Query: 394 NQLTIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453
NQ+T WDL++ E DLP QLLF+HQG+ DLKELHWH Q PG+
Sbjct: 376 NQITQWDLAVERDPEAGDA------ETDPGLADLPQQLLFVHQGETDLKELHWHPQCPGV 429
Query: 454 IVSTAADGFNI 464
+VSTA GF +
Sbjct: 430 LVSTALSGFTV 440
|
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| UNIPROTKB|E2RBY0 GRWD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 141/311 (45%), Positives = 182/311 (58%)
Query: 159 PILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHG 216
P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A
Sbjct: 133 PQLELAMVPHYGGINRVRVSWLGEEP-VAGIWSEKGQVEVFALRRLLQVVDDPQALATFL 191
Query: 217 APQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF 276
+ P+ F GH EG+A+DW+P GRL++GDC IHLW P +W+VD PF
Sbjct: 192 RDEQARVKPIFTFAGHMGEGFALDWSPRVSGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 251
Query: 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA---LMSFKAHNADVNVISWN 333
+GH SVEDLQWSPTE VFASCS D +I IWD R S L + AH+ DVNVI+W+
Sbjct: 252 MGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTTSAHDGDVNVINWS 311
Query: 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393
R LL SG DDG I DLR K G S VA F+ H P+TS+EW P + A S AD
Sbjct: 312 RREPFLL-SGGDDGALKIWDLRQFKSG-SPVATFKQHVAPITSVEWHPQDSGVFAASGAD 369
Query: 394 NQLTIWDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453
NQ+T WDL++ E DLP QLLF+HQG+ DLKELHWH Q PG+
Sbjct: 370 NQITQWDLAVERDPEAGDT------ETDPGLADLPQQLLFVHQGETDLKELHWHPQCPGV 423
Query: 454 IVSTAADGFNI 464
+VSTA GF +
Sbjct: 424 LVSTALSGFTV 434
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| MGI|MGI:2141989 Grwd1 "glutamate-rich WD repeat containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 189/458 (41%), Positives = 249/458 (54%)
Query: 16 KERTRTQKKGNGXXXXXI-PSL--PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGW 71
K R+RT + G P P++V+ PG L EGEEL D AY H G
Sbjct: 5 KGRSRTCETGEPMEAETCDPGTEGPSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGA 64
Query: 72 PCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPA 131
PCLSFDI+RD LG R E P + Y AG+QAE N + + ++ N+ G R P+ P+
Sbjct: 65 PCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTR----PS-PS 119
Query: 132 TXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWA 189
P L+L V H G +NR+R + + P + W+
Sbjct: 120 EGSDDDEEDEDEEDEEEQK--------PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWS 170
Query: 190 DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249
+ G V+V+ R L + + + +A + P+ F GH EG+A+DW+P PGRL
Sbjct: 171 EKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRL 230
Query: 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
++GDC +HLW P +WNVD PF+GH SVEDLQWSPTE VFASCS D +I IWD
Sbjct: 231 LTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWD 290
Query: 310 TRV--GKSALMSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366
R GK+ +++ AH+ DVNVISW+R LL SG DDG + DLR K G S VA
Sbjct: 291 IRAAPGKACMLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKVWDLRQFKSG-SPVAT 348
Query: 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLXXXXXXXXXXXXXTREQVNAPED 426
F+ H PVTS+EW P + A S ADNQ+T WDL++ T + A
Sbjct: 349 FKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETE---TDPGLAA--- 402
Query: 427 LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNI 464
LP QLLF+HQG+ DLKELHWH Q PG+++STA GF +
Sbjct: 403 LPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTV 440
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54ED4 | GRWD1_DICDI | No assigned EC number | 0.4620 | 0.8559 | 0.8506 | yes | no |
| Q1JQD2 | GRWD1_BOVIN | No assigned EC number | 0.4285 | 0.9018 | 0.9686 | yes | no |
| Q5XI13 | GRWD1_RAT | No assigned EC number | 0.4390 | 0.8475 | 0.9123 | yes | no |
| Q9P783 | RRB1_SCHPO | No assigned EC number | 0.4159 | 0.8246 | 0.8229 | yes | no |
| Q810D6 | GRWD1_MOUSE | No assigned EC number | 0.4291 | 0.8935 | 0.9596 | yes | no |
| Q9BQ67 | GRWD1_HUMAN | No assigned EC number | 0.4334 | 0.9081 | 0.9753 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016571001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (474 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00020673001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa) | • | • | • | 0.854 | |||||
 | GSVIVG00037695001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa) | • | • | 0.769 | ||||||
 | GSVIVG00026600001 | SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa) | • | 0.759 | |||||||
 | GSVIVG00034559001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa) | • | 0.747 | |||||||
 | GSVIVG00028481001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa) | • | • | 0.746 | ||||||
 | GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | • | • | 0.746 | ||||||
 | GSVIVG00005498001 | SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa) | • | 0.742 | |||||||
 | GSVIVG00019376001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa) | • | 0.740 | |||||||
 | GSVIVG00033408001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa) | • | 0.732 | |||||||
 | GSVIVG00002877001 | SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (801 aa) | • | • | 0.731 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 479 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-17 | |
| pfam12265 | 73 | pfam12265, CAF1C_H4-bd, Histone-binding protein RB | 9e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-11 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 3e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-07 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 9e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 4e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 8e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 3e-23
Identities = 61/238 (25%), Positives = 91/238 (38%), Gaps = 35/238 (14%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
H G V + + D G ++VWD L
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGD-GTIKVWDLE---------------------TGELLR 45
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
GH + + L SG + I LW+ + GH + V +
Sbjct: 46 TLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVA 100
Query: 288 WSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG 347
+SP + +S S D I +WD GK L + + H VN ++++ + +AS S DG
Sbjct: 101 FSPD-GRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGT-FVASSSQDG 157
Query: 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405
T + DLR K VA H V S+ +SP +G L SS+D + +WDLS K
Sbjct: 158 TIKLWDLRTGK----CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGK 210
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 74/274 (27%), Positives = 104/274 (37%), Gaps = 55/274 (20%)
Query: 158 TPILQLRKVAHQGCVNRIRAMSQNPHI-CASWADTGHVQVWDFRSHLNALAESETVAGHG 216
T L H G V + A + ++ S T +++WD L T+ GH
Sbjct: 40 TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT--IRLWD----LETGECVRTLTGHT 93
Query: 217 AP-------------------------QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251
+ V L GH D ++ ++P + S
Sbjct: 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVAS 152
Query: 252 GDCNSCIHLWEPASD---ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
+ I LW+ + AT GH V + +SP S S DG I +W
Sbjct: 153 SSQDGTIKLWDLRTGKCVAT-------LTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLW 204
Query: 309 DTRVGKSALMSFKAHNADVN--VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366
D GK L + + H VN S + LLASGS+DGT + DLR + V
Sbjct: 205 DLSTGKC-LGTLRGHENGVNSVAFSPDGY---LLASGSEDGTIRVWDLRTGE----CVQT 256
Query: 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
H + VTS+ WSP +G LA SAD + IWD
Sbjct: 257 LSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 12/191 (6%)
Query: 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV 283
+ GH + ++ ++P + I LW+ + + GH V
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHTDPV 201
Query: 284 EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NADVNVISWNRLASCLLAS 342
L +SP + AS S DG I +WD GK + H ++ V+ S + LLAS
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD---GSLLAS 258
Query: 343 GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
GS DGT + DLR S++ H V S+ +SP +G LA S+D + +WDL
Sbjct: 259 GSSDGTIRLWDLR---SSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLE 314
Query: 403 LEKDEEEEAEF 413
K
Sbjct: 315 TGKLLSSLTLK 325
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.0 bits (219), Expect = 5e-19
Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 29/239 (12%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226
H V + + + + G +++WD R+ PL
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---------------------GKPL 191
Query: 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDL 286
GH D ++ ++P + SG + I LW+ + T + + GH+ SV
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSV-VS 247
Query: 287 QWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD 346
+SP + + AS S DG I +WD R S L + H++ V ++++ LLASGS D
Sbjct: 248 SFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSD 305
Query: 347 GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405
GT + DL G + H+ PV+S+ +SP ++ S D + +WDL K
Sbjct: 306 GTVRLWDLE--TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.0 bits (206), Expect = 3e-17
Identities = 72/306 (23%), Positives = 117/306 (38%), Gaps = 38/306 (12%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
H V+ + + AS + G +++WD T++GH V + SP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSVVSSFSPDG 253
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
L SG + I LW+ S + GH++SV +
Sbjct: 254 SL-------------------LASGSSDGTIRLWDLRSS---SSLLRTLSGHSSSVLSVA 291
Query: 288 WSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFKAHNADVNVISWNRLASCLLASGSDD 346
+SP + + AS S DG + +WD GK ++ K H V+ +S++ S L++ GSDD
Sbjct: 292 FSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 347 GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKD 406
GT + DLR K V S+ +SP G ++ S D + +WDLS
Sbjct: 351 GTIRLWDLRTGK-----PLKTLEGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSL 404
Query: 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466
++ +P+ + G D W + VS + DG +
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKS-----LASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459
Query: 467 PSNIQS 472
S+ S
Sbjct: 460 KSSDLS 465
|
Length = 466 |
| >gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 9e-17
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 49 EEGEEL--QCDPTAYNSLHAFHIGWPCLSFDILRDTL-GLVRNEFPYTAYFVAGSQAEKP 105
E EL + DP Y+ LH + WP LSFD L D L G R T + G+Q
Sbjct: 1 NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYPH--TQRLLLGTQTSGQ 58
Query: 106 SWNSIGVFKVSNISG 120
N + V KVS S
Sbjct: 59 EQNYLLVAKVSLPSK 73
|
The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.6 bits (153), Expect = 8e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%)
Query: 229 FGGHKDEGYAIDWNPVAPGRLVSG-DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
GH+D +I ++P L D + + +++ H +SV L
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL----HDSSVSKLA 116
Query: 288 W-SPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
SP + + + S +DG + +WD + + + H+ V ++++ L + S
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405
DGT + DLR ++ H PV+S+ +SP G +A S+D + +WDLS K
Sbjct: 177 DGTIKLWDLR----TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK 232
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG-------KSALMSFKAHNADVNVI 330
GH +S+ DLQ++P S++ AS S D I +W+ K K H +++I
Sbjct: 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131
Query: 331 SWNRLASCLLASGSDDGTFSIHDL 354
WN + ++ S D +I D+
Sbjct: 132 DWNPMNYYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379
K H V ++++ LLA+GS DGT + DL ++ + H PV +
Sbjct: 5 LKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRDVAA 59
Query: 380 SPHEGSTLAVSSADNQLTIWDLSLEK 405
S G+ LA S+D + +WDL +
Sbjct: 60 SAD-GTYLASGSSDKTIRLWDLETGE 84
|
Length = 289 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 271 VDPNPFI--GHAASVEDLQWSPTESDVFASCSVDGNIAIWD------TRVGKSALMSFKA 322
+ NP I G + D+ ++P + + S DG I W T+ ++ +
Sbjct: 64 LASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG 123
Query: 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382
H V ++S++ A +LAS D ++ D+ K + + H + +TS+EW+
Sbjct: 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWN-L 178
Query: 383 EGSTLAVSSADNQLTIWD 400
+GS L +S D +L I D
Sbjct: 179 DGSLLCTTSKDKKLNIID 196
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-05
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
++ + H PVTS+ +SP G LA S D + +WD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 1e-04
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
++ + H PVTS+ +SP G+ LA S D + +WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 235 EGYAID--WNPVAPGRLVSGDCNSCIHLWE-PASDATWNVDPN--PFIGHAASVEDLQWS 289
EG ID +NP P +L + + I W P T N+ GH V + +
Sbjct: 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH 134
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTF 349
P+ +V AS D + +WD GK A+ K H+ + + WN L LL + S D
Sbjct: 135 PSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKL 192
Query: 350 SIHDLRLLKGGDSVVAH 366
+I D R SV AH
Sbjct: 193 NIIDPRDGTIVSSVEAH 209
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 2e-04
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
GH V + +SP AS S DG I +WD
Sbjct: 8 LKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
GH V + +SP ++ AS S DG + +WD
Sbjct: 7 LKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 216 GAPQVLNQ---SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE-PASDATWNV 271
GA ++ NQ P++K GH + +NP L SG + I +WE P +D +
Sbjct: 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113
Query: 272 DPNP---FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317
+P GH + + W+P + S D + IWD K A
Sbjct: 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
|
Length = 568 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVE 284
P+V+ + + I WN ++ S + + +W D + H V
Sbjct: 525 PVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVW----DVARSQLVTEMKEHEKRVW 579
Query: 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS 344
+ +S + + AS S DG++ +W G S + + K A++ + + + LA GS
Sbjct: 580 SIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKT-KANICCVQFPSESGRSLAFGS 637
Query: 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403
D +DLR K + H V+ + + + STL SS DN L +WDLS+
Sbjct: 638 ADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSM 691
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.003
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353
L + K H V ++++ LASGSDDGT + D
Sbjct: 5 LKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.003
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353
L + K H V ++++ LLASGSDDGT + D
Sbjct: 4 LRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.93 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.87 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.81 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.8 | |
| PF12265 | 74 | CAF1C_H4-bd: Histone-binding protein RBBP4 or subu | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.78 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.78 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.78 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.76 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.75 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.72 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.71 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.71 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.66 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.65 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.63 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.6 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.58 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.53 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.46 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.42 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.41 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.41 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.37 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.31 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.26 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.26 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.25 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.24 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.22 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.19 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.11 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.09 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.07 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.06 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.05 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.02 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.02 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.98 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.97 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.95 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.94 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.9 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.88 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.88 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.88 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.85 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.85 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.8 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.8 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.79 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.76 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.75 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.74 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.74 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.72 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.7 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.69 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.67 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.67 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.64 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.62 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.55 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.55 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.54 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.54 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.53 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.5 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.43 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.34 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.34 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.31 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.29 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.28 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.24 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.13 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.1 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.97 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.96 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.95 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.93 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.84 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.79 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.76 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.67 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.64 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.63 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.63 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.58 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.55 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.54 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.52 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.49 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.46 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.45 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.42 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.34 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.33 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.28 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.27 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.23 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.15 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.01 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.01 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.91 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.91 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.86 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.83 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.79 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.79 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.78 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.69 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.61 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.54 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.51 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.47 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.41 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.38 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.36 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.33 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.05 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.03 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.99 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.91 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.9 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.85 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.83 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.78 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.72 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.67 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.64 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.64 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.56 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.3 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.29 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.22 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.22 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.07 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.04 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.02 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.73 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.61 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.53 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.46 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.14 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.03 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.97 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.92 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.72 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.63 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.59 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.47 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.46 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.4 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.21 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.09 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.03 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.02 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.49 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.49 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 92.35 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.34 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.32 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.27 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.27 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 91.95 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 91.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.74 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 91.72 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 91.64 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 91.46 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.65 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 90.57 | |
| PRK10115 | 686 | protease 2; Provisional | 90.24 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.18 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.11 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.91 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.87 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 88.6 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 88.6 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 88.48 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 88.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.87 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.44 | |
| PRK10115 | 686 | protease 2; Provisional | 87.34 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.43 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 86.07 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 86.07 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 85.62 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 85.29 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.81 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.62 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 84.48 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 83.64 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 82.93 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 81.82 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 80.12 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 80.05 |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-86 Score=594.01 Aligned_cols=407 Identities=54% Similarity=0.975 Sum_probs=360.9
Q ss_pred CCCCCCeeecCCcc-cCCCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEE
Q 039302 33 IPSLPTKVWQPGVD-KLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIG 111 (479)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~ 111 (479)
.+....++|+||.. +|++||+|++||++|.|+|.++++||||+|+++||.+|++|++||++.|+|+||||.....|.|+
T Consensus 31 i~~d~~~~~lpg~~~~l~~~EeL~~DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~ 110 (440)
T KOG0302|consen 31 IEEDGAQVYLPGMSRPLGDDEELVADPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELM 110 (440)
T ss_pred cccccceeeccCCCCCCCCCceEecCHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceE
Confidence 45555889999965 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCC-CcEEEEEeC
Q 039302 112 VFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN-PHICASWAD 190 (479)
Q Consensus 112 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~-~~~lat~s~ 190 (479)
||+++||++++... +.++.++++|++++ ++|++..+.++|.+.||+++.++.+ ..++|+++.
T Consensus 111 vlkl~nl~~t~~~~------------~gd~~~~~eddedD-----~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse 173 (440)
T KOG0302|consen 111 VLKLSNLHKTRNPN------------DGDGEDEEEDDEDD-----RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSE 173 (440)
T ss_pred EEEeeeeecccCCc------------cCCCCCccccchhh-----ccccccccccccccccceeeecccCCcceeeeecc
Confidence 99999999998732 11111111111111 5899999999999999999999985 689999999
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN 270 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~ 270 (479)
.|.|+||++..+.+.+..+...... ...+|++++.+|..+.++|+|||...+.|+||++-+.|++|...+ +.|.
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~-----s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~ 247 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKD-----SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWK 247 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccc-----cccCceEEecccCccceeeecccccccccccCccccceEeeeecc-Ccee
Confidence 9999999999988887766554443 357899999999999999999998888999999999999999988 7899
Q ss_pred cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 039302 271 VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLASGSDDGTF 349 (479)
Q Consensus 271 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i 349 (479)
+...+|.+|+.+|.+|+|||...++|++||.||+|+|||+|.+. .+....++|.+.||.|+||... .+||+|++||++
T Consensus 248 vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~ 326 (440)
T KOG0302|consen 248 VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTL 326 (440)
T ss_pred ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-ceeeecCCCceE
Confidence 99999999999999999999999999999999999999999983 3445559999999999999998 599999999999
Q ss_pred EEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC
Q 039302 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP 429 (479)
Q Consensus 350 ~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 429 (479)
+|||||+.+. ..++.+|+.|+.+|++|.|+|+....|+++|.|++|.||||....+.++... .......++||
T Consensus 327 ~iwDLR~~~~-~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~------~a~~~L~dlPp 399 (440)
T KOG0302|consen 327 SIWDLRQFKS-GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ------EAAEGLQDLPP 399 (440)
T ss_pred EEEEhhhccC-CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc------ccccchhcCCc
Confidence 9999999886 4799999999999999999999999999999999999999999987655432 12333668999
Q ss_pred ceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 430 QLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 430 ~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
||+|+|+|++.|++++||++.|++|+|++.+||+||++.++
T Consensus 400 QLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfktIsv 440 (440)
T KOG0302|consen 400 QLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKTISV 440 (440)
T ss_pred eeEEEecchhHhhhheeccCCCCeEEEecccceeEEEeccC
Confidence 99999999999999999999999999999999999999874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=461.59 Aligned_cols=382 Identities=32% Similarity=0.579 Sum_probs=319.0
Q ss_pred CCCCCeeecCCcccCCCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEE
Q 039302 34 PSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVF 113 (479)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~ 113 (479)
-+.+.++|...++ +|||++++++|+|||||+||+||........|. .++|++||||+++.+|+|+|.
T Consensus 16 i~Eey~~WKkNtp------------~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~-~~rliLGthTs~~~~n~L~iA 82 (422)
T KOG0264|consen 16 INEEYKIWKKNTP------------FLYDLVITHALEWPSLTVQWLPDVTKPEEKDFS-KQRLILGTHTSGSEQNYLVIA 82 (422)
T ss_pred ccchhhHHhhcCc------------HHHHHhhhccccccceEEEEcCCcccccCCCce-eEEEEEEeecCCCCccEEEEE
Confidence 3445789999987 999999999999999999999995544444443 689999999999999999999
Q ss_pred EeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC--C-ceeEEEEecCCcceeEEEEecCCCcEEEEEeC
Q 039302 114 KVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSG--T-PILQLRKVAHQGCVNRIRAMSQNPHICASWAD 190 (479)
Q Consensus 114 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~-p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~ 190 (479)
++ .|+...... + +...+.+..+.+++. . .+.....+.|.++||++|++|+++.+|||++.
T Consensus 83 ~v-~lp~~~~~~----------~------~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~ 145 (422)
T KOG0264|consen 83 SV-QLPTDDAQF----------E------DKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTS 145 (422)
T ss_pred ee-cCCCccccc----------c------cccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCC
Confidence 98 454332211 1 111122222222221 2 23345789999999999999999999999999
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc-
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW- 269 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~- 269 (479)
.+.|+|||..++.......+ ...|..++.||.++.++|.|++...+.|++|+.|+.|++||++.....
T Consensus 146 ~~dv~Vfd~tk~~s~~~~~~-----------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 146 SGDVYVFDYTKHPSKPKASG-----------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED 214 (422)
T ss_pred CCCEEEEEeccCCCcccccc-----------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence 99999999998654442221 357778999999999999999999999999999999999999875442
Q ss_pred --ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 270 --NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV-GKSALMSFKAHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 270 --~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
......+.+|...|++++|++...++|++++.|+.+.|||+|+ ..++.....+|...|+|++|+|.+..+|||||.|
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 3334568899999999999999999999999999999999996 2336677899999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 347 GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 347 g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
++|++||+|+... ++.++.+|...|.+|.|+|+...+||+++.|+++.|||+....... ......+
T Consensus 295 ~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq-----------~~eda~d 360 (422)
T KOG0264|consen 295 KTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ-----------SPEDAED 360 (422)
T ss_pred CcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc-----------Chhhhcc
Confidence 9999999999987 9999999999999999999999999999999999999999875431 1234568
Q ss_pred CCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 427 LPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 427 ~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.||+++|.|+||. .|.+++|+|+.|++|+|.++|+ +.||++...
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 9999999999998 5999999999999999999999 899999854
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=312.24 Aligned_cols=249 Identities=22% Similarity=0.357 Sum_probs=224.6
Q ss_pred eEEEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
+...+.+|.+.|.++.|+|. ...-+|||+.||+|++|+++. ..++..+.+|...|..+
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------e~~l~~l~gH~~RVs~V 267 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------ETPLQDLEGHLARVSRV 267 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC---------------------Ccchhhhhcchhhheee
Confidence 44689999999999999998 457899999999999999997 58889999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|+|. +|+|++.|.+-++||+.+... .....||...|.+|+|+|+|. +++||+.|..-+|||+|+++ ++..
T Consensus 268 afHPsG~-~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr-~im~ 340 (459)
T KOG0272|consen 268 AFHPSGK-FLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGR-CIMF 340 (459)
T ss_pred eecCCCc-eeeecccccchhhcccccchh----hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCc-EEEE
Confidence 9999999 999999999999999988654 244789999999999999999 99999999999999999997 7888
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|...|.+|+|+|+| ..|||||.|++++|||+|..+ .+.++.+|..-|+.|.|+|..+++|+|+|.|++++||
T Consensus 341 L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~----~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS----ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred ecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc----cceecccccchhhheEecccCCeEEEEcccCcceeee
Confidence 99999999999999999 999999999999999999988 7999999999999999999888999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.-..... .+.+..|. ..|.++..+|++. .+++++.|. +++|.+
T Consensus 416 s~~~~~~----------------------~ksLaGHe--~kV~s~Dis~d~~-~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 416 STRTWSP----------------------LKSLAGHE--GKVISLDISPDSQ-AIATSSFDRTIKLWRP 459 (459)
T ss_pred cCCCccc----------------------chhhcCCc--cceEEEEeccCCc-eEEEeccCceeeeccC
Confidence 9887632 23344443 4699999999995 788888887 888863
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=302.93 Aligned_cols=250 Identities=21% Similarity=0.338 Sum_probs=223.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...++-+.+|..+.|++++ .+|||||.+|.++||+... ...+.+|.||...+.++.|+
T Consensus 169 ~SQ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~---------------------~~~~~~l~gH~~~v~~~~fh 226 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQ---------------------CNLLQTLRGHTSRVGAAVFH 226 (459)
T ss_pred hhhccCCCcceeeEeecCC-CeEEEeecCCceeEeecCC---------------------cceeEEEeccccceeeEEEc
Confidence 3456778999999999999 8999999999999999987 67889999999999999999
Q ss_pred CCC-CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVA-PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~-~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|.. ...||||+.||++++|++.+... ...+.+|...|..++|+|+|+ +|+|++.|.+-++||++++. .+....
T Consensus 227 P~~~~~~lat~s~Dgtvklw~~~~e~~----l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~-ElL~QE 300 (459)
T KOG0272|consen 227 PVDSDLNLATASADGTVKLWKLSQETP----LQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS-ELLLQE 300 (459)
T ss_pred cCCCccceeeeccCCceeeeccCCCcc----hhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch-hhHhhc
Confidence 983 44899999999999999977433 467899999999999999999 99999999999999999986 566679
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|.+++|+++| .+++|||.|..-+|||+|++. ++..+.+|..+|.+|+|+|++ +.|||||.|++++||||
T Consensus 301 GHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDL 374 (459)
T ss_pred ccccccceeEecCCC-ceeeccCccchhheeecccCc----EEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeee
Confidence 999999999999999 999999999999999999999 899999999999999999965 99999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+.... ..++..|. .-|+.|.|.|+...+|++++.|+ ++||...+.
T Consensus 375 R~r~~----------------------ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 375 RMRSE----------------------LYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred ccccc----------------------ceeccccc--chhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 98742 13344443 56999999997778999999999 999987665
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=293.54 Aligned_cols=250 Identities=24% Similarity=0.460 Sum_probs=215.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.++|-|++|+|++ ..||||+.|.+|++||+.+ ..|+++.++|..-|.|++|+|
T Consensus 110 S~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T---------------------eTp~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT---------------------ETPLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred ccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC---------------------CCcceeecCCccEEEEEEECC
Confidence 467999999999999988 7899999999999999998 689999999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-----CCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-----ESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++. .||+|+.||.|++||..+++... ..+.+|...|++++|.|- .+ +||++|.||.|+|||+..+. ++.
T Consensus 168 Dgk-~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~-~~~ 241 (480)
T KOG0271|consen 168 DGK-KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT-CVR 241 (480)
T ss_pred Ccc-hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce-EEE
Confidence 998 99999999999999999876644 779999999999999774 34 89999999999999999875 888
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC---------------------------------------
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--------------------------------------- 359 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--------------------------------------- 359 (479)
.+.+|...|+|+.|--++ +|++|+.|++|++|+...+..
T Consensus 242 ~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 899999999999998655 899999999999998654211
Q ss_pred ------------------------------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 360 ------------------------------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 360 ------------------------------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...++..+.+|..-|+.+.|+|++ .++|++|-|..|++|+.++
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC
Confidence 012445566889999999999965 9999999999999999999
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++. +....|| ..|..++|+.+.. ||+||+.|. ++||++..-
T Consensus 399 Gk~-------------------------lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 399 GKF-------------------------LASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred cch-------------------------hhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee
Confidence 852 2222333 4799999999884 999999998 999988653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=280.68 Aligned_cols=259 Identities=25% Similarity=0.456 Sum_probs=229.6
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+.+.+.+...-...+..++|++...+.+++++.||.++|||+.. ...|+..++.|..+|+
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------~s~Pi~~~kEH~~EV~ 108 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------PSKPIHKFKEHKREVY 108 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------CCcchhHHHhhhhheE
Confidence 45666777788899999999999989999999999999999776 4679999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|++.....+++++-|++|+||+....+. ..+|.+|...|...+|+|..+++|+++|.|++++|||+|...+.+
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee
Confidence 9999998877899999999999999977554 356999999999999999999999999999999999999986444
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+.+|...|.++.|+..+.++|+||+.|+.|++||+|+.+. |+..+.+|.-.|+.|+|||+...+||+++.|-+++
T Consensus 185 -~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~---pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 185 -SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT---PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred -EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc---cceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 48999999999999999989999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
|||...+.... +....|. .-|..+.|++..++.+|+++.|. ++||++
T Consensus 261 iw~~~~~ds~~---------------------e~~~~Ht--EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDSAI---------------------ETVDHHT--EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchhhh---------------------hhhhccc--eEEeccccccccCceeeecccccceeeecc
Confidence 99998663211 1112222 35899999999999999999999 999986
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=286.46 Aligned_cols=245 Identities=23% Similarity=0.333 Sum_probs=214.2
Q ss_pred EEEecCCcceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 163 LRKVAHQGCVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
..+.+|+..|++++|.|-. ..+||+++.||.|+|||+.. +.++..+.||+.+|+|
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---------------------~~~~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---------------------GTCVRTLSGHTASVTC 252 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---------------------ceEEEEeccCccceEE
Confidence 3577999999999999853 46899999999999999987 7889999999999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC-----------CCCCc-------------
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS-----------PTESD------------- 294 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s-----------p~~~~------------- 294 (479)
+.|--.+ +|++|+.|++|++|+...+.. .+.+.+|...|+.|+.+ |.+..
T Consensus 253 vrwGG~g--liySgS~DrtIkvw~a~dG~~----~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 253 VRWGGEG--LIYSGSQDRTIKVWRALDGKL----CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred EEEcCCc--eEEecCCCceEEEEEccchhH----HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 9997554 999999999999999977544 36789999999999876 33331
Q ss_pred -----------EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 295 -----------VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 295 -----------~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
.+++|++|.++.+|+-...++++....+|..-|+.+.|+|++ .++|+++.|..|++||.++++ .
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk----~ 401 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK----F 401 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc----h
Confidence 499999999999999988877888999999999999999999 999999999999999999999 7
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-Cee
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLK 442 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~ 442 (479)
+.+|++|-++|+.|+|+.+. ++|++||.|.++++|++++.+ +.+-..||. .|.
T Consensus 402 lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK-------------------------l~~DLpGh~DEVf 455 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK-------------------------LKQDLPGHADEVF 455 (480)
T ss_pred hhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee-------------------------ecccCCCCCceEE
Confidence 99999999999999999955 999999999999999999874 223333444 699
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
++.|+|+|. .++|++.|. +++|+
T Consensus 456 ~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCc-eeecCCCceEEEeec
Confidence 999999995 899999996 56654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=288.12 Aligned_cols=246 Identities=21% Similarity=0.382 Sum_probs=215.2
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEE
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAID 240 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 240 (479)
+..+..|...|.++.|++++ ..+++|..+|.|++|+.+. +.+..+.+|. ..|.+++
T Consensus 131 EtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm----------------------nnVk~~~ahh~eaIRdla 187 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM----------------------NNVKIIQAHHAEAIRDLA 187 (464)
T ss_pred HHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch----------------------hhhHHhhHhhhhhhheec
Confidence 35678999999999999999 7888999999999999876 3344455555 7999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|... .|++|+.||+|+|||....... ..+.+|.-.|.+++|+|.-. +++++|.|..|++||.|++. ++.++
T Consensus 188 fSpnDs-kF~t~SdDg~ikiWdf~~~kee----~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~-cl~tl 260 (464)
T KOG0284|consen 188 FSPNDS-KFLTCSDDGTIKIWDFRMPKEE----RVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS-CLATL 260 (464)
T ss_pred cCCCCc-eeEEecCCCeEEEEeccCCchh----heeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc-hhhhh
Confidence 999776 9999999999999999775442 44689999999999999988 99999999999999999996 89999
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
..|+..|..+.|+|++ ++|+|+|.|..++++|+|+.+ .+.++++|+..|+++.|+|-...+|.+|+.||.|..|.
T Consensus 261 h~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred hhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEe
Confidence 9999999999999999 999999999999999999877 68999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+...... +.+-..|. ..|++++|||-| ++|++++.|. +++|.
T Consensus 336 v~~~~p~---------------------~~i~~AHd--~~iwsl~~hPlG-hil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 336 VGLEEPL---------------------GEIPPAHD--GEIWSLAYHPLG-HILATGSNDRTVRFWT 378 (464)
T ss_pred ccccccc---------------------cCCCcccc--cceeeeeccccc-eeEeecCCCcceeeec
Confidence 9854311 12223343 579999999998 6999999998 77774
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=264.74 Aligned_cols=256 Identities=20% Similarity=0.271 Sum_probs=222.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+...+.+|++.|..++..+.++.++.+++.|.++.+|++...... .+.+++.|.||...|..+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------~G~~~r~~~GHsH~v~dv 69 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------YGVPVRRLTGHSHFVSDV 69 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------cCceeeeeeccceEecce
Confidence 4556789999999999999999999999999999999999874222 378899999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+.++++. +.++++.|+.+++||+.++.. .+.|.+|+..|.+++|+++++ .+++||.|++|++|++... +..+
T Consensus 70 ~~s~dg~-~alS~swD~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~--ck~t 141 (315)
T KOG0279|consen 70 VLSSDGN-FALSASWDGTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV--CKYT 141 (315)
T ss_pred EEccCCc-eEEeccccceEEEEEecCCcE----EEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc--EEEE
Confidence 9999998 999999999999999988644 366999999999999999998 9999999999999999876 3444
Q ss_pred Eec--CCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 320 FKA--HNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 320 ~~~--h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+.. +...|+|+.|+|+. ..+|++++.|++|++||+++.+ ....+.+|++.++.++++|++ .++++|+.||.+
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~ 216 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEA 216 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCCC-CEEecCCCCceE
Confidence 433 37889999999984 4899999999999999999988 788999999999999999965 999999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
.+||++..+ -++...+...|.+++|+|+..+ |+.+-..+|+||++.+-
T Consensus 217 ~LwdL~~~k-------------------------~lysl~a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 217 MLWDLNEGK-------------------------NLYSLEAFDIVNSLCFSPNRYW-LCAATATSIKIWDLESK 264 (315)
T ss_pred EEEEccCCc-------------------------eeEeccCCCeEeeEEecCCcee-EeeccCCceEEEeccch
Confidence 999999874 2444454568999999999864 44455556999998653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=297.47 Aligned_cols=210 Identities=23% Similarity=0.423 Sum_probs=195.3
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.|+|..++|+|+. ++|+++|+|++|++|.+.+ ..++..++||..+|+++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t---------------------~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT---------------------WSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc---------------------ceeEEEecCCCcceeeEE
Confidence 335699999999999999999 7888999999999999998 678888999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|.|- +||||+.|++-++|....... .+.+.+|.+.|.|++|+|+.. ++++||.|.+||+||+.++. .+..|
T Consensus 501 F~P~Gy-YFatas~D~tArLWs~d~~~P----lRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~-~VRiF 573 (707)
T KOG0263|consen 501 FAPRGY-YFATASHDQTARLWSTDHNKP----LRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGN-SVRIF 573 (707)
T ss_pred ecCCce-EEEecCCCceeeeeecccCCc----hhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCc-EEEEe
Confidence 999998 999999999999999876433 467999999999999999998 99999999999999999996 78889
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.+|.++|.+++|+|.| .+|++|+.||.|++||+.++. ++..+.+|++.|+++.|+.++ .+||+||.|++|++||
T Consensus 574 ~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWD 647 (707)
T ss_pred cCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEE
Confidence 9999999999999999 999999999999999999988 899999999999999999955 9999999999999999
Q ss_pred CCCCC
Q 039302 401 LSLEK 405 (479)
Q Consensus 401 l~~~~ 405 (479)
+....
T Consensus 648 ~~~~~ 652 (707)
T KOG0263|consen 648 LTKVI 652 (707)
T ss_pred chhhc
Confidence 98764
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=254.24 Aligned_cols=247 Identities=20% Similarity=0.287 Sum_probs=210.2
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.--...|..++|+|.+ +++|+|+-|....||++....+.. .......+.+|.+-+.|+.|-+++
T Consensus 94 pl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------------~~~v~r~l~gHtgylScC~f~dD~ 157 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------------NVRVSRELAGHTGYLSCCRFLDDN 157 (343)
T ss_pred ecCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------------cceeeeeecCccceeEEEEEcCCC
Confidence 3346789999999999 899999999999999998632111 134456789999999999999854
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.|+||+.|.++.+||+.++.. ...|.+|.+.|.++.++|...+.|++|+.|++.+|||+|.+. ++++|.+|..
T Consensus 158 --~ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghes 230 (343)
T KOG0286|consen 158 --HILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHES 230 (343)
T ss_pred --ceEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeeccccc
Confidence 799999999999999998765 356899999999999999555599999999999999999995 8999999999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
.||+++|.|+| .-|++|++|++.++||+|..+ .+..+.. -..+|++++|+-. +++|.+|..|..+.+||.-.
T Consensus 231 DINsv~ffP~G-~afatGSDD~tcRlyDlRaD~----~~a~ys~~~~~~gitSv~FS~S-GRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 231 DINSVRFFPSG-DAFATGSDDATCRLYDLRADQ----ELAVYSHDSIICGITSVAFSKS-GRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred ccceEEEccCC-CeeeecCCCceeEEEeecCCc----EEeeeccCcccCCceeEEEccc-ccEEEeeecCCceeEeeccc
Confidence 99999999999 899999999999999999987 5666653 3468999999984 59999999999999999876
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
.... ..+..|. ..|+++..+|+| ..+++++.|. ++||.
T Consensus 305 ~e~v----------------------g~L~GHe--NRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 GERV----------------------GVLAGHE--NRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred cceE----------------------EEeeccC--CeeEEEEECCCC-cEEEecchhHheeecC
Confidence 6321 3344444 579999999999 5899999998 88883
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=294.38 Aligned_cols=269 Identities=24% Similarity=0.317 Sum_probs=221.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccc------cccc---cccCCCCCccccCCCcEEecCC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NAL------AESE---TVAGHGAPQVLNQSPLVKFGGH 232 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~h 232 (479)
.....-...++|+.|++++ .++|.|-.|..|++|.+.... ... .... .................++.||
T Consensus 372 YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 4444555789999999999 699999999999999998521 011 0010 0000011111123345568999
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
.++|+.+.|+|+.+ +|++|+.|++|++|.+.+.... ..+.||..+|.+++|+|.|- +|||+|.|++.++|....
T Consensus 451 ~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s~~----V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCL----VIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWSTDH 524 (707)
T ss_pred CCceeeeeeccccc-ceeeccCCcceeeeecccceeE----EEecCCCcceeeEEecCCce-EEEecCCCceeeeeeccc
Confidence 99999999999998 9999999999999999885542 34779999999999999987 999999999999999988
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
.. ++..+.+|.+.|.|++|+|+. +++|+||.|.+|++||+.++. .++.|.||.++|++++|+| ++.+|++|+.
T Consensus 525 ~~-PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~e 597 (707)
T KOG0263|consen 525 NK-PLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSP-CGRYLASGDE 597 (707)
T ss_pred CC-chhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcC-CCceEeeccc
Confidence 65 888999999999999999999 999999999999999999998 7999999999999999999 5599999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||.|+|||+..+... ..++.|. ..|.++.|+.++. +||+++.|+ |++|++...
T Consensus 598 d~~I~iWDl~~~~~v----------------------~~l~~Ht--~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLV----------------------KQLKGHT--GTIYSLSFSRDGN-VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcEEEEEcCCCcch----------------------hhhhccc--CceeEEEEecCCC-EEEecCCCCeEEEEEchhh
Confidence 999999999987432 2345552 4699999999995 888888887 999998765
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=252.63 Aligned_cols=256 Identities=21% Similarity=0.315 Sum_probs=208.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
...++.+|...|+.+..++++ +++.+++.|+++++||+.. +++...|.||...|.+++
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~---------------------g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT---------------------GESTRRFVGHTKDVLSVA 112 (315)
T ss_pred eeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecC---------------------CcEEEEEEecCCceEEEE
Confidence 345888999999999999999 7888999999999999998 688899999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
|++++. +|+||+.|.+|++|++....... ..-.++..-|+|+.|+|+. ..+|+++|.|++|++||+++.+ ....
T Consensus 113 ~s~dn~-qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~ 187 (315)
T KOG0279|consen 113 FSTDNR-QIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTT 187 (315)
T ss_pred ecCCCc-eeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhc
Confidence 999998 99999999999999987643322 1122337889999999994 3399999999999999999985 6778
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|++.++.+.++|+| .++++|+.||.+.+||++..+ .+..+. |...|.+++|+|+. ..|+.+ .+..|+||
T Consensus 188 ~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k----~lysl~-a~~~v~sl~fspnr-ywL~~a-t~~sIkIw 259 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK----NLYSLE-AFDIVNSLCFSPNR-YWLCAA-TATSIKIW 259 (315)
T ss_pred cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc----eeEecc-CCCeEeeEEecCCc-eeEeec-cCCceEEE
Confidence 89999999999999999 999999999999999999988 677665 78999999999954 555555 45669999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEE--eecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLF--IHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
|+......++.. +...- ...+.....+++|+++|..|++.-.++.|++|.+.
T Consensus 260 dl~~~~~v~~l~-----------------~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 260 DLESKAVVEELK-----------------LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccchhhhhhcc-----------------ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999876543211 11111 11111236789999999877766666669999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=278.32 Aligned_cols=248 Identities=26% Similarity=0.462 Sum_probs=213.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
++......-+..|+.|+|.|+| +.|++|+..|.+.+|+... ......++.|..+|.+|
T Consensus 87 f~h~s~NKvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~---------------------fnFEtilQaHDs~Vr~m 144 (464)
T KOG0284|consen 87 FVHTSSNKVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTS---------------------FNFETILQAHDSPVRTM 144 (464)
T ss_pred eEeccccccccceeeEEEcCCC-ceeEeecccccEEEecCce---------------------eeHHHHhhhhcccceeE
Confidence 4444445667899999999999 5667899999999999865 34445577899999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.|++++. +++||+.+|.|++|+.+.... ..+.+ |...|++++|+|++. .|++||.||+|+|||.+..+ .-.
T Consensus 145 ~ws~~g~-wmiSgD~gG~iKyWqpnmnnV-----k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~k-ee~ 216 (464)
T KOG0284|consen 145 KWSHNGT-WMISGDKGGMIKYWQPNMNNV-----KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPK-EER 216 (464)
T ss_pred EEccCCC-EEEEcCCCceEEecccchhhh-----HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCc-hhh
Confidence 9999998 999999999999999865433 33444 458999999999887 99999999999999999886 455
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|.-.|.+++|+|.. .+||+||.|..|++||.|++. ++.++.+|+..|..+.|+|++ ++|+|+|.|..+++
T Consensus 217 vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~----cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS----CLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKV 290 (464)
T ss_pred eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc----hhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEE
Confidence 679999999999999988 899999999999999999999 899999999999999999977 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+|++..++ ++...+| +.|+++.|||-.+.|+++++.|| |..|.+.
T Consensus 291 ~DiR~mkE-------------------------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 291 FDIRTMKE-------------------------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EehhHhHH-------------------------HHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 99996642 2333333 57999999999999999999999 8888765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=250.31 Aligned_cols=254 Identities=15% Similarity=0.206 Sum_probs=216.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|+++.|+++. +.|+++|.||.+.|||.-+ ......+.-...-|..++|+
T Consensus 49 r~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~T---------------------tnK~haipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFT---------------------TNKVHAIPLPSSWVMTCAYS 106 (343)
T ss_pred EEecccccceeeeEecCCc-CeEEeeccCCeEEEEEccc---------------------ccceeEEecCceeEEEEEEC
Confidence 5688999999999999999 6788999999999999877 34455666677899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|.+. ++|.|+.|....||++.+... .....+.+.+|++.+.|+.|-+++ .|+++|.|.+..+||+.+++ .+..+
T Consensus 107 PSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~-~~~~f 182 (343)
T KOG0286|consen 107 PSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQ-QTQVF 182 (343)
T ss_pred CCCC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccce-EEEEe
Confidence 9998 999999999999999986522 222346689999999999999855 69999999999999999996 78889
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.+|.+.|.+++++|...+.+++|+-|+..+|||+|.+. ++++|.+|...|++|.|.|++ .-|++||.|+++++||
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~----c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ----CVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc----eeEeecccccccceEEEccCC-CeeeecCCCceeEEEe
Confidence 99999999999999555999999999999999999998 899999999999999999965 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
++.... -.+|.|.... +|++++|+..|..|++...+-++++|+.-.-
T Consensus 258 lRaD~~-----------------------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 258 LRADQE-----------------------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ecCCcE-----------------------EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 998752 2344454332 7999999999975555444444999997543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=265.62 Aligned_cols=246 Identities=25% Similarity=0.465 Sum_probs=214.5
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.-...|++++|+.+| .+||+|+.+|.++||+... ..+.++..|+++|++|.|+..+.
T Consensus 233 ~~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G----------------------~l~~tl~~HkgPI~slKWnk~G~ 289 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDG----------------------NLISTLGQHKGPIFSLKWNKKGT 289 (524)
T ss_pred CccCCcceEEecCCC-CeEEEeecCcEEEEEecCc----------------------hhhhhhhccCCceEEEEEcCCCC
Confidence 345689999999999 8999999999999999875 56778889999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCc-------------------------------------cccCCCCcccCCCcEEEEEEC
Q 039302 247 GRLVSGDCNSCIHLWEPASDAT-------------------------------------WNVDPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~-------------------------------------~~~~~~~~~~h~~~V~~l~~s 289 (479)
+|++++.||++.+||..++.. ...+..++.+|.++|++|.|+
T Consensus 290 -yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 290 -YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred -EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999999865421 112345577899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCC--------CcEEEEEeCCCeEEEEeCCCCCCCC
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA--------SCLLASGSDDGTFSIHDLRLLKGGD 361 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~--------~~~l~sgs~dg~i~iwDlr~~~~~~ 361 (479)
|.+. +|++||.|++++||...... +...+.+|...|..+.|+|.+ ...|++++.|++|++||+..+.
T Consensus 369 ~tg~-LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv--- 443 (524)
T KOG0273|consen 369 PTGS-LLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV--- 443 (524)
T ss_pred CCCc-eEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---
Confidence 9999 99999999999999988764 778899999999999999876 3589999999999999999998
Q ss_pred ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCe
Q 039302 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDL 441 (479)
Q Consensus 362 ~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V 441 (479)
++++|..|..+|++++|+|++ .++|+|+.||.|+||+++.. +++....+...|
T Consensus 444 -~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~-------------------------~l~~s~~~~~~I 496 (524)
T KOG0273|consen 444 -PIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTG-------------------------KLVKSYQGTGGI 496 (524)
T ss_pred -eeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccch-------------------------heeEeecCCCeE
Confidence 899999999999999999965 99999999999999999987 456666666679
Q ss_pred eeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 442 KELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 442 ~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
..++|+..+..+.++.+++.+.+.+++
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999766666666668887764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=235.58 Aligned_cols=284 Identities=21% Similarity=0.351 Sum_probs=216.9
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cCCCCceEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GGHKDEGYA 238 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 238 (479)
.+...+.+|++.|..++|+|-...+||||+.|..|+||+.... . ...+...+ .+|+..|..
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~-----------------s~~ck~vld~~hkrsVRs 66 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-D-----------------SWTCKTVLDDGHKRSVRS 66 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-C-----------------cEEEEEeccccchheeee
Confidence 3456788999999999999983379999999999999999851 1 11222222 379999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ce
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SA 316 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~ 316 (479)
++|+|.++ +|++|+.|.++.||.-..+.... ...+.||...|.|++|+++|. +||+|+.|+.|-||.+.... .+
T Consensus 67 vAwsp~g~-~La~aSFD~t~~Iw~k~~~efec--v~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 67 VAWSPHGR-YLASASFDATVVIWKKEDGEFEC--VATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeecCCCc-EEEEeeccceEEEeecCCCceeE--EeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEE
Confidence 99999999 99999999999999876543322 467899999999999999999 99999999999999998553 26
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
...+..|...|..+.|+|.. .+|++++.|.+|++|+-.. .....++.++.+|...|.+++|+|.+ ..|++++.|++|
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv 219 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTV 219 (312)
T ss_pred EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcce
Confidence 77789999999999999988 8999999999999998774 22366899999999999999999965 999999999999
Q ss_pred EEEECCCCCChHHH-HHHh-----h---hccc--------ccCCCCCCCCceEE-eec-CCCCeeeEEEeCCCCcEEEEE
Q 039302 397 TIWDLSLEKDEEEE-AEFK-----A---KTRE--------QVNAPEDLPPQLLF-IHQ-GQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 397 ~iwdl~~~~~~~~~-~~~~-----~---~~~~--------~~~~~~~~p~~l~~-~h~-g~~~V~~v~w~p~~~~ll~s~ 457 (479)
+||-+...-..... +.+. + .... ....+......++. .+. +...|++++|+|..+.+|+|+
T Consensus 220 ~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 220 SIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred EeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence 99995432111000 0000 0 0000 00000011111111 112 223799999999777899999
Q ss_pred cCCC-ceEEeee
Q 039302 458 AADG-FNILMPS 468 (479)
Q Consensus 458 ~~dg-i~iw~~~ 468 (479)
++|| +++|.+.
T Consensus 300 ~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 300 GDDGIVNFWELE 311 (312)
T ss_pred CCCceEEEEEec
Confidence 9999 9999863
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=253.88 Aligned_cols=245 Identities=21% Similarity=0.312 Sum_probs=217.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|.|+++-|-+ ..+|||+.|++++|||+.+ ++...++.||...|..+++|
T Consensus 145 rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat---------------------g~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT---------------------GQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred hhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc---------------------CeEEEeecchhheeeeeeec
Confidence 4567999999999999987 8999999999999999998 78889999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+..+ +|.+++.|+.|+.||+...+. ++.+.||-+.|.|++.+|.-. ++++|+.|.++++||+|+.. .+..+.+
T Consensus 203 ~rHp-YlFs~gedk~VKCwDLe~nkv----IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~-~V~~l~G 275 (460)
T KOG0285|consen 203 KRHP-YLFSAGEDKQVKCWDLEYNKV----IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA-SVHVLSG 275 (460)
T ss_pred ccCc-eEEEecCCCeeEEEechhhhh----HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc-eEEEecC
Confidence 9999 999999999999999987544 467899999999999999998 99999999999999999985 7889999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|.++.+.|.+ ..+++|+.|++|++||++.++ .+.++..|+..|.+++.+|.. +.||++|.|+ |+-|++.
T Consensus 276 H~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agk----t~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGK----TMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC-CceEEecCCceEEEeeeccCc----eeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCC
Confidence 99999999999988 789999999999999999998 788899999999999999955 8999998875 8889998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+.. +....||. -|+.++.+.++ ++++|+++| +.+|+..+.
T Consensus 349 ~g~f-------------------------~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 349 EGEF-------------------------LQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred ccch-------------------------hhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcC
Confidence 7731 11123444 58888888774 889999998 888887664
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=254.97 Aligned_cols=269 Identities=23% Similarity=0.380 Sum_probs=225.7
Q ss_pred CCCcccC-CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeE
Q 039302 84 GLVRNEF-PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQ 162 (479)
Q Consensus 84 ~~~~~~~-~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~ 162 (479)
..+|.+| |++..+|| | +...+.|+||+++.-....... +...|.+
T Consensus 126 EVnRaRymPQnp~iVA-t---~t~~~dv~Vfd~tk~~s~~~~~-----------------------------~~~~Pdl- 171 (422)
T KOG0264|consen 126 EVNRARYMPQNPNIVA-T---KTSSGDVYVFDYTKHPSKPKAS-----------------------------GECRPDL- 171 (422)
T ss_pred cchhhhhCCCCCcEEE-e---cCCCCCEEEEEeccCCCccccc-----------------------------ccCCCce-
Confidence 3467776 88888887 3 4567899999996422211100 0124555
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
++.+|+++-+.+.|+++....+++++.|++|++||++...... ....+...+.+|...|..++|+
T Consensus 172 -~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~--------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 172 -RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED--------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred -EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC--------------ccccceEEeecCCcceehhhcc
Confidence 8999999999999999998899999999999999998743321 0256778899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+.....|++++.|+.+.|||+++. .........+|.+.|+|++|+|.+.++||+||.|++|.+||+|..+.++.++.+
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 999889999999999999999973 222346678999999999999999999999999999999999999889999999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
|...|.+|.|+|.....||+++.|+.+.|||+...... ..++..-.||+..|..+.|+|+.+..|+|.+.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999765432 23556778899999999999999999999999
Q ss_pred CCcEEEEECCC
Q 039302 393 DNQLTIWDLSL 403 (479)
Q Consensus 393 Dg~I~iwdl~~ 403 (479)
|+.+.||.+..
T Consensus 395 DN~LqIW~~s~ 405 (422)
T KOG0264|consen 395 DNILQIWQMAE 405 (422)
T ss_pred CceEEEeeccc
Confidence 99999999974
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=251.91 Aligned_cols=311 Identities=20% Similarity=0.303 Sum_probs=243.3
Q ss_pred ChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEee---cCCCCCCceEEEEEeeecCCccccCCCCCCCCC
Q 039302 57 DPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGS---QAEKPSWNSIGVFKVSNISGKRRELVPNKPATG 133 (479)
Q Consensus 57 d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt---~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~ 133 (479)
=|.+|..++...-.|-|=-+-.-.-+ ++.......|++-.- --+|.++|.|.||+...
T Consensus 166 ~pki~~di~~idsNWr~Gr~~~~rin---c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~---------------- 226 (499)
T KOG0281|consen 166 YPKIIQDIETIESNWRCGRHLLQRIN---CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS---------------- 226 (499)
T ss_pred hHHHHHHHhhhhcchhccceeeeeec---CCcccCCceEEEEecchhhhcccccCceEEecccc----------------
Confidence 36889999999999988644432221 111111233332211 01356899999997731
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccccccccccc
Q 039302 134 DEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVA 213 (479)
Q Consensus 134 ~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~ 213 (479)
-.....+.||+|.|.|+.|.. .++++||.|.+|+|||+++
T Consensus 227 -------------------------~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t------------ 266 (499)
T KOG0281|consen 227 -------------------------LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT------------ 266 (499)
T ss_pred -------------------------HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC------------
Confidence 223356889999999999975 6999999999999999998
Q ss_pred CCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC
Q 039302 214 GHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES 293 (479)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 293 (479)
++++.++-+|...|..+.|+. ++++|++.|.+|.+||+..... ......+.||..+|+.+.|+ .+
T Consensus 267 ---------ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd--~k 331 (499)
T KOG0281|consen 267 ---------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFD--DK 331 (499)
T ss_pred ---------CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeeccc--cc
Confidence 899999999999999999985 5999999999999999977543 22345688999999999997 44
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
+++++|.|.+|++|++.+.. .+.++.+|..+|.|+.+.. .++++|+.|.+|++||+..+. ++..+.+|..-
T Consensus 332 -yIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQYr~---rlvVSGSSDntIRlwdi~~G~----cLRvLeGHEeL 402 (499)
T KOG0281|consen 332 -YIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEEL 402 (499)
T ss_pred -eEEEecCCceEEEEecccee-eehhhhcccccceehhccC---eEEEecCCCceEEEEeccccH----HHHHHhchHHh
Confidence 99999999999999999986 8889999999999999873 899999999999999999998 89999999999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
|.+|.|+. ..+++|+.||+|+|||+....++.. ....+....+..|. ..|..+.|..- .+
T Consensus 403 vRciRFd~---krIVSGaYDGkikvWdl~aaldpra-------------~~~~~Cl~~lv~hs--gRVFrLQFD~f--qI 462 (499)
T KOG0281|consen 403 VRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRA-------------PASTLCLRTLVEHS--GRVFRLQFDEF--QI 462 (499)
T ss_pred hhheeecC---ceeeeccccceEEEEecccccCCcc-------------cccchHHHhhhhcc--ceeEEEeecce--EE
Confidence 99999974 7899999999999999988754310 01111112223333 47999999764 36
Q ss_pred EEEEcCCCceEEeeecc
Q 039302 454 IVSTAADGFNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dgi~iw~~~~~ 470 (479)
++++.++.|.||++.+.
T Consensus 463 vsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 463 ISSSHDDTILIWDFLNG 479 (499)
T ss_pred EeccCCCeEEEEEcCCC
Confidence 66666667999999776
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=240.47 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=214.0
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.|++ .+.+|++.|++++|+|+| .+||||+.|..|.+|++.. ..+....+++|++.|.
T Consensus 38 ap~m--~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g--------------------dceN~~~lkgHsgAVM 94 (338)
T KOG0265|consen 38 APIM--LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG--------------------DCENFWVLKGHSGAVM 94 (338)
T ss_pred chhh--hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc--------------------cccceeeeccccceeE
Confidence 4554 788999999999999988 7999999999999999776 3455677889999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.+.|.+++. .|++++.|.+|+.||+.+++. .+.+.+|..-|+.+.-+.-|..++.+++.||++++||+|+.. ++
T Consensus 95 ~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~ 168 (338)
T KOG0265|consen 95 ELHGMRDGS-HILSCGTDKTVRGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AI 168 (338)
T ss_pred eeeeccCCC-EEEEecCCceEEEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hh
Confidence 999999998 999999999999999999766 467899999999999777788789999999999999999875 55
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.+. ....++++.|+..+ ..+.+|+-|+.|++||+|... ...++.+|..+|+.+..+|.+ .++.+-+.|++++
T Consensus 169 ~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvr 241 (338)
T KOG0265|consen 169 KTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVR 241 (338)
T ss_pred hccc-cceeEEEEEecccc-cceeeccccCceeeeccccCc----ceEEeecccCceeeEEeccCC-CccccccccceEE
Confidence 5443 35679999999988 889999999999999999988 799999999999999999965 9999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC--CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ--KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~--~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++..... .....+...|.+. .....++|+|++. .+.+++.|. +.+|+...
T Consensus 242 vwd~rp~~p~------------------~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 242 VWDVRPFAPS------------------QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEecccCCC------------------CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc
Confidence 9999865321 0111222333322 2467889999996 555555555 99998865
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=250.76 Aligned_cols=265 Identities=22% Similarity=0.393 Sum_probs=212.1
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CC
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HK 233 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~ 233 (479)
.|.-..+...|+.+|.+.+|.|....++|+|+.+-..++|++........... ..+.-....+ .+
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~-----------~lrh~~~~~~~s~~~n 235 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL-----------VLRHCIREGGKSVPSN 235 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh-----------hhhhhhhhhcccCCcc
Confidence 44444566779999999999998866999999999999999985211110000 0000011111 23
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
..|++|+|+.+|. .||+|+.||.++||+.... . ...+..|+++|.++.|+..|. ++++++.||++.|||..++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l----~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-L----ISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCch-h----hhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCc
Confidence 5899999999998 9999999999999998553 2 256888999999999999998 9999999999999998442
Q ss_pred ----------------------------------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 314 ----------------------------------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 314 ----------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
+.|+.++.+|.+.|++|.|+|.+ .+|+++++|++++||.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeee
Confidence 12456677899999999999999 9999999999999999
Q ss_pred CCCCCCCCceEEEeecCCCCeEEEEEeCCC--------CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCC
Q 039302 354 LRLLKGGDSVVAHFEYHKHPVTSIEWSPHE--------GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPE 425 (479)
Q Consensus 354 lr~~~~~~~~~~~~~~h~~~I~~v~~sp~~--------~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 425 (479)
+.... .+..+.+|...|..+.|+|.+ +..|++++.|++|++||+..+..
T Consensus 388 ~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~------------------- 444 (524)
T KOG0273|consen 388 MGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP------------------- 444 (524)
T ss_pred cCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-------------------
Confidence 88877 788999999999999999965 35899999999999999988741
Q ss_pred CCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 426 DLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 426 ~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+. .++.+|.+|+|+|++. ++++|+.|| |+||.+...
T Consensus 445 ---i~~f~--kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 445 ---IHTLM--KHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred ---eEeec--cCCCceEEEEecCCCc-EEEecCCCCeeEeccccch
Confidence 12222 3346899999999995 899999998 999987543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=247.54 Aligned_cols=254 Identities=24% Similarity=0.407 Sum_probs=226.5
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.|-+..++.+|...|+++-|+|.- .+++++++|++|++||+.+ ++....++||...+.
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~t---------------------g~~e~~LrGHt~sv~ 154 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTET---------------------GELERSLRGHTDSVF 154 (406)
T ss_pred CCCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccc---------------------hhhhhhhhcccccee
Confidence 456667899999999999999988 7899999999999999998 677889999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.++|+..|. +|++++.|-.+.+||..+.... .+...+|.-.|.+++|-|.+. ++++|+.|.+|++|++.++- ++
T Consensus 155 di~~~a~Gk-~l~tcSsDl~~~LWd~~~~~~c---~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~-cv 228 (406)
T KOG0295|consen 155 DISFDASGK-YLATCSSDLSAKLWDFDTFFRC---IKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY-CV 228 (406)
T ss_pred EEEEecCcc-EEEecCCccchhheeHHHHHHH---HHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce-eE
Confidence 999999998 9999999999999999763221 356788999999999999997 99999999999999999985 89
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC--------------C
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH--------------E 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~--------------~ 383 (479)
.++.+|...|..++.+.+| .++|+++.|.+|++|-+.+.+ +...++.|..+|-+++|.|. +
T Consensus 229 ~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 229 KTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQ----CKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred EeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccch----hhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 9999999999999999999 999999999999999999887 67889999999999999874 2
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+.++.+++.|++|++||+.++. .++.-.||. .|.+++|||.|. +|+|+++|+
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~-------------------------cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDkt 357 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGM-------------------------CLFTLVGHDNWVRGVAFSPGGK-YILSCADDKT 357 (406)
T ss_pred ccEEEeecccceEEEEeccCCe-------------------------EEEEEecccceeeeeEEcCCCe-EEEEEecCCc
Confidence 3599999999999999999984 344444454 799999999996 888899888
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
++||++.+.
T Consensus 358 lrvwdl~~~ 366 (406)
T KOG0295|consen 358 LRVWDLKNL 366 (406)
T ss_pred EEEEEeccc
Confidence 999999886
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=268.43 Aligned_cols=252 Identities=21% Similarity=0.339 Sum_probs=218.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+..++..|.|+|..|.|+|.+ .++++|++|-.|+||++.. .+++.++.||-+-|..+
T Consensus 42 tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~---------------------rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT---------------------RRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred hHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc---------------------ceehhhhccccceeEEe
Confidence 3445778999999999999999 5899999999999999997 78999999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc----
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---- 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---- 315 (479)
.|++.-+ .|+|+|.|.+|+||+..++... ..+.||...|.|.+|+|.+. +++|+|-|.+||+||+...+.
T Consensus 100 ~FHheyP-WIlSASDDQTIrIWNwqsr~~i----avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 100 FFHHEYP-WILSASDDQTIRIWNWQSRKCI----AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred eccCCCc-eEEEccCCCeEEEEeccCCceE----EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCC
Confidence 9999998 9999999999999999886653 55889999999999999988 999999999999999853210
Q ss_pred ------------------------eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC
Q 039302 316 ------------------------ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK 371 (479)
Q Consensus 316 ------------------------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~ 371 (479)
....+.+|..+||.++|+|.- .+|++|++|..|++|.+...+ .-.+-+.++|.
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetK--aWEvDtcrgH~ 250 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETK--AWEVDTCRGHY 250 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccc--ceeehhhhccc
Confidence 123357899999999999999 899999999999999987665 23467889999
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVP 451 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~ 451 (479)
+.|+++-|+|+. .++++.|+|++|+|||+..... --.|.+. +...+.++-||...
T Consensus 251 nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~-----------------------v~tfrre-ndRFW~laahP~lN 305 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTS-----------------------VQTFRRE-NDRFWILAAHPELN 305 (1202)
T ss_pred CCcceEEecCcc-ceeEecCCCccEEEEecccccc-----------------------eeeeecc-CCeEEEEEecCCcc
Confidence 999999999965 9999999999999999987642 1123333 45789999999984
Q ss_pred cEEEEEcCCCceEEeee
Q 039302 452 GMIVSTAADGFNILMPS 468 (479)
Q Consensus 452 ~ll~s~~~dgi~iw~~~ 468 (479)
|++++.+.|+.||++.
T Consensus 306 -LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 306 -LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred -eeeeecCCceEEEEEc
Confidence 9999999999999885
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=259.72 Aligned_cols=252 Identities=21% Similarity=0.363 Sum_probs=211.2
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|+..|++++|+|...+||++|+.|+.|+||++-. ...++.+|.+|..+|.+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFKGHRKPVRDASF 266 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhhcchhhhhhhhc
Confidence 4567899999999999995559999999999999999987 47899999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+..+. .|+|++.|+.|++||+.++.... .+. ....++|+.|+|++.+.|++|+.|+.|+.||+|+++ .++.+.
T Consensus 267 s~~g~-~fLS~sfD~~lKlwDtETG~~~~----~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd 339 (503)
T KOG0282|consen 267 NNCGT-SFLSASFDRFLKLWDTETGQVLS----RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYD 339 (503)
T ss_pred cccCC-eeeeeecceeeeeeccccceEEE----EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHH
Confidence 99998 99999999999999999976522 221 245689999999998899999999999999999996 788888
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------C------------
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------------------------D------------ 361 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------------------------~------------ 361 (479)
.|-+.|+.+.|-+++ ..+++.++|++++||+.+..-.. .
T Consensus 340 ~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 340 RHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred hhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 999999999999999 89999999999999998754320 0
Q ss_pred --ceEEEeecCC--CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC
Q 039302 362 --SVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG 437 (479)
Q Consensus 362 --~~~~~~~~h~--~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g 437 (479)
..-..|++|. +.-..+.|||++ .+|++|..||.+.+||.++-+.. ..+..|.
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl~----------------------~~lkah~- 474 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKLV----------------------SKLKAHD- 474 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhhh----------------------hccccCC-
Confidence 0111233443 234578999955 99999999999999999887421 2334442
Q ss_pred CCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 438 QKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 438 ~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
..+..+.|||..+..+|+|+.+| |++|+
T Consensus 475 -~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 -QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -cceEEEEecCCCcceeEecccCceeEecC
Confidence 57999999999999999999999 99995
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-31 Score=236.44 Aligned_cols=248 Identities=18% Similarity=0.293 Sum_probs=201.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|++.|.++..+|+. +++|||+.|...+||++.+ +..+..+.+|+..|+++.|+
T Consensus 58 ~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~---------------------ge~~~eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST---------------------GEFAGELTGHKDSVTCCSFS 115 (399)
T ss_pred eehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC---------------------CcceeEecCCCCceEEEEEc
Confidence 5788999999999999955 8999999999999999998 56778899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++. +||||+.+|.|+||...++.... .+...-..+.-+.|+|.+. +|+.|+.||.+-+|.+.... ..+.+.+
T Consensus 116 hdgt-lLATGdmsG~v~v~~~stg~~~~----~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~-~~kv~~G 188 (399)
T KOG0296|consen 116 HDGT-LLATGDMSGKVLVFKVSTGGEQW----KLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA-LCKVMSG 188 (399)
T ss_pred cCce-EEEecCCCccEEEEEcccCceEE----EeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc-eeeEecC
Confidence 9998 99999999999999998865532 2333456788899999887 99999999999999999863 5677899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC---------------------------------------C--
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------------D-- 361 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------------~-- 361 (479)
|+.++++-.|.|+| ..+++|..||+|++|++.+++.. .
T Consensus 189 h~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKV 267 (399)
T ss_pred CCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceE
Confidence 99999999999998 89999999999999999876530 0
Q ss_pred --------------------------------------------------ceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 362 --------------------------------------------------SVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 362 --------------------------------------------------~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
..++..-.|..+|+.+.|-+ . .+|++++
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-~~l~t~c 345 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-DYLLTAC 345 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-chheeec
Confidence 00011113455566666655 2 5566666
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
.||.|++||.+++ ++++...||. .|.+++.+|+.. +++++++|+ .+||+..
T Consensus 346 ~~g~v~~wDaRtG-------------------------~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 ANGKVRQWDARTG-------------------------QLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCceEEeeecccc-------------------------ceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 6666666666665 6777777776 799999999985 889999998 7888753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=222.20 Aligned_cols=255 Identities=19% Similarity=0.285 Sum_probs=207.5
Q ss_pred EEEecCC-cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQ-GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~-~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+.+.|. +.||++...|++ ..||+++. -.|++||+++. ...|+.+|.+|+..|.++.|
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~-------------------np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSN-------------------NPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCC-------------------CCCceeEEeccCCceEEEEE
Confidence 4555665 789999999999 56666444 68999999983 34589999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
..++. .++||+.||+++|||++.... .....|.++|+++..+|+.. .|++|..+|.|++||++.......-+.
T Consensus 92 ~~dgr-WMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 92 QCDGR-WMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred eecCe-EEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCC
Confidence 99998 999999999999999987433 34556789999999999988 899999999999999998742222234
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.....|.++...|+| .+|+.+...|..++|++-+... .-.|+..|+.|.+.|..+.+||+. .+||++|.|.+++||
T Consensus 165 e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIW 242 (311)
T ss_pred CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEE
Confidence 455789999999999 8999999999999999876432 234778899999999999999965 999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
+....-. .-+....|+..+.+++|+.++. .|++++.|+ .++|.+..-.
T Consensus 243 n~~~~~k-----------------------le~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 243 NTDDFFK-----------------------LELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ecCCcee-----------------------eEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccCc
Confidence 9976510 1122223346799999999996 677777777 8999987764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=242.17 Aligned_cols=249 Identities=22% Similarity=0.353 Sum_probs=219.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
++..+.+|+..|..|+|...| .++|+++.|=.+++||+.. ..+++..+.+|...|.++.
T Consensus 142 ~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~--------------------~~~c~ks~~gh~h~vS~V~ 200 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDT--------------------FFRCIKSLIGHEHGVSSVF 200 (406)
T ss_pred hhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHH--------------------HHHHHHHhcCcccceeeEE
Confidence 345788999999999999999 8999999999999999988 3566777889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|-|.+. +++|++.|.+|+.|++.++-. ...+.+|..-|.-++.+.+|. ++|+|+.|.+|++|-+.++. +...+
T Consensus 201 f~P~gd-~ilS~srD~tik~We~~tg~c----v~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~-~k~~l 273 (406)
T KOG0295|consen 201 FLPLGD-HILSCSRDNTIKAWECDTGYC----VKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQ-CKAEL 273 (406)
T ss_pred EEecCC-eeeecccccceeEEeccccee----EEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccch-hhhhh
Confidence 999997 999999999999999988654 367999999999999999998 99999999999999999875 67788
Q ss_pred ecCCCCEEEEEEcCCC--------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 321 KAHNADVNVISWNRLA--------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~--------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
..|..+|.+++|.|.. ..++++++.|++|++||+.++. ++.++.+|..+|..++|+| +|.+
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~tL~ghdnwVr~~af~p-~Gky 348 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFTLVGHDNWVRGVAFSP-GGKY 348 (406)
T ss_pred hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEEEecccceeeeeEEcC-CCeE
Confidence 9999999999997742 3699999999999999999998 8999999999999999999 5599
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
|+++..|+++++||+++..+. ..+..|. --|+++.||.+.+ ++++|+-+. +++|
T Consensus 349 i~ScaDDktlrvwdl~~~~cm----------------------k~~~ah~--hfvt~lDfh~~~p-~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQCM----------------------KTLEAHE--HFVTSLDFHKTAP-YVVTGSVDQTVKVW 403 (406)
T ss_pred EEEEecCCcEEEEEeccceee----------------------eccCCCc--ceeEEEecCCCCc-eEEeccccceeeee
Confidence 999999999999999998642 1222333 3599999999988 888999888 8888
Q ss_pred ee
Q 039302 466 MP 467 (479)
Q Consensus 466 ~~ 467 (479)
.-
T Consensus 404 Ec 405 (406)
T KOG0295|consen 404 EC 405 (406)
T ss_pred ec
Confidence 63
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=237.46 Aligned_cols=263 Identities=27% Similarity=0.420 Sum_probs=213.2
Q ss_pred eeEEEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.......+|.++|..+.|.-.+ ...+++++.|.++++|.++...+. .+.+....||...|-
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------VKALKVCRGHKRSVD 197 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------hhHHhHhccccccee
Confidence 3445788999999988887655 346899999999999999874332 233444559999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCC---------------------ccccCCCCcccCCCcEEEEEECCCCCcEE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDA---------------------TWNVDPNPFIGHAASVEDLQWSPTESDVF 296 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~---------------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 296 (479)
+++..+++. ++++|+.|.+|.||+..+.. ....+...+.+|+.+|.++.|++.+ .+
T Consensus 198 sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~ 274 (423)
T KOG0313|consen 198 SVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VI 274 (423)
T ss_pred EEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC--ce
Confidence 999999998 99999999999999932210 0122334577999999999999833 79
Q ss_pred EEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 297 ASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 297 ~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
.++|.|.+|+.||+.+++ ....+. .+..+++++.+|.. .+||+|+.|..|++||.|++.. ..+..+|.+|++.|.+
T Consensus 275 yS~SwDHTIk~WDletg~-~~~~~~-~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGG-LKSTLT-TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG-SVVSQSLIGHKNWVSS 350 (423)
T ss_pred EeecccceEEEEEeeccc-ceeeee-cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC-ceeEEeeecchhhhhh
Confidence 999999999999999986 444444 45679999999988 9999999999999999999853 4466789999999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+.|+|.+..+|++|+.|+++++||++.... .+.-.+.+...|.++.|+.. .+|+|
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~-----------------------plydI~~h~DKvl~vdW~~~--~~IvS 405 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-----------------------PLYDIAGHNDKVLSVDWNEG--GLIVS 405 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCC-----------------------cceeeccCCceEEEEeccCC--ceEEe
Confidence 999999999999999999999999998742 23444444457999999875 47889
Q ss_pred EcCCC-ceEEeeeccC
Q 039302 457 TAADG-FNILMPSNIQ 471 (479)
Q Consensus 457 ~~~dg-i~iw~~~~~~ 471 (479)
||.|. |+|++..++.
T Consensus 406 GGaD~~l~i~~~~~~~ 421 (423)
T KOG0313|consen 406 GGADNKLRIFKGSPIT 421 (423)
T ss_pred ccCcceEEEecccccc
Confidence 98888 9999877653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=258.45 Aligned_cols=258 Identities=19% Similarity=0.262 Sum_probs=219.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|+..|.++....+| .+|||||.|.+|++|.++.... ...++....+|...|.+++++.
T Consensus 360 ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~-----------------~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS-----------------KSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc-----------------hhhhhhhhcccccccceeeecc
Confidence 577999999999977677 7999999999999999954211 2345566789999999999998
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCcccc-----CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNV-----DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.+..+|+++|.|++|++|++........ .......|...|++++.+|+.+ +|||||.|++.+||++.... ...
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~ 499 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLG 499 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEE
Confidence 8888999999999999999976322111 0112357999999999999999 99999999999999999664 778
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|.++.|+|.. .++||+|.|++|+||.+.++. ++.+|.+|...|..++|-.++ ..|++++.||.|++
T Consensus 500 vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS----ClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKl 573 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS----CLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKL 573 (775)
T ss_pred EeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce----eeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEE
Confidence 899999999999999998 899999999999999999998 899999999999999999865 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccCC
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQS 472 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~~ 472 (479)
|++++..+. ..+-.|. ..|++++-+|... ++++++.|| |.+|+-.+.++
T Consensus 574 Wnikt~eC~----------------------~tlD~H~--DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~~ 623 (775)
T KOG0319|consen 574 WNIKTNECE----------------------MTLDAHN--DRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEEE 623 (775)
T ss_pred Eeccchhhh----------------------hhhhhcc--ceeEEEeecCccc-eeEecCCCeEEEEeecCcHHH
Confidence 999998653 2344443 6799999999986 888888888 88998655533
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=247.70 Aligned_cols=284 Identities=20% Similarity=0.292 Sum_probs=207.8
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
++++.+|+..|.++++.|.| -.|+|||.|.+|++||+......+.. .+.+.- .....|.++.|
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~--------------fr~l~P--~E~h~i~sl~y 222 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRS--------------FRQLQP--CETHQINSLQY 222 (641)
T ss_pred eEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchh--------------hhccCc--ccccccceeee
Confidence 46788999999999999999 67889999999999999885443321 111111 22347899999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCC--------CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASD--------ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~--------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
++.+. .|++.+....++|+|-... ...........||...++|.+|+|..+..|++|+.||++||||+...
T Consensus 223 s~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 223 SVTGD-QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred cCCCC-eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 99998 8888777889999986432 22334445678999999999999999999999999999999999987
Q ss_pred CceeeEEe-----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC--CeEEEEEeCCCCCE
Q 039302 314 KSALMSFK-----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH--PVTSIEWSPHEGST 386 (479)
Q Consensus 314 ~~~~~~~~-----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~--~I~~v~~sp~~~~~ 386 (479)
+..+..+. +..-.+++++|+|++ .+||+|+.||.|.+|+.++... ......-.+|.. .|+||.|++++ ++
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~g~~Itsi~FS~dg-~~ 378 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLPGQDITSISFSYDG-NY 378 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc-ccceEeeeccCCCCceeEEEecccc-ch
Confidence 65444442 234578999999999 8899999999999999876553 223444567877 89999999955 99
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHH-----Hhhhccc----------ccCCC-CCCCCceEEeec-----------CCC
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAE-----FKAKTRE----------QVNAP-EDLPPQLLFIHQ-----------GQK 439 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~~~~----------~~~~~-~~~p~~l~~~h~-----------g~~ 439 (479)
|++-|.|+++++|||+..+.+..... |...... ..... ...++.|.|... ...
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a 458 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA 458 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc
Confidence 99999999999999998876533221 0000000 00001 112222332221 123
Q ss_pred CeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 440 DLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
.|..+.|||....+++++++++++||-
T Consensus 459 Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 459 SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eEEEEeecchhhheeeecCCCceEEEE
Confidence 588999999988889988888777763
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=228.04 Aligned_cols=241 Identities=23% Similarity=0.413 Sum_probs=204.8
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.|..+.|++++ ..|++++.|.+|+.||+.+ ++.++.+++|..-|++++-+.
T Consensus 85 ~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~t---------------------G~~~rk~k~h~~~vNs~~p~r 142 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAET---------------------GKRIRKHKGHTSFVNSLDPSR 142 (338)
T ss_pred eeccccceeEeeeeccCC-CEEEEecCCceEEEEeccc---------------------ceeeehhccccceeeecCccc
Confidence 455999999999999999 6777889999999999998 788999999999999999666
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
-+.-++.||+.||+++|||+++.... + ....+..++++.|..++. .+.+|+-|+.|++||+|... ....+.+|
T Consensus 143 rg~~lv~SgsdD~t~kl~D~R~k~~~----~-t~~~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~d-~~~~lsGh 215 (338)
T KOG0265|consen 143 RGPQLVCSGSDDGTLKLWDIRKKEAI----K-TFENKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKND-GLYTLSGH 215 (338)
T ss_pred cCCeEEEecCCCceEEEEeecccchh----h-ccccceeEEEEEeccccc-ceeeccccCceeeeccccCc-ceEEeecc
Confidence 66657889999999999999875442 2 223356799999998887 89999999999999999885 78889999
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC----CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH----PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~----~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
...|+.|+.+|.+ .++++-+.|.++++||+|-..+...++..|.+|.. ....++|+|++ ..+.+|+.|..+++|
T Consensus 216 ~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvw 293 (338)
T KOG0265|consen 216 ADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVW 293 (338)
T ss_pred cCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEe
Confidence 9999999999999 89999999999999999988776667888888643 34678999955 999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg 461 (479)
|.... .+++.-.||. .|+++.|||..+ +|.+++.|.
T Consensus 294 d~~~r-------------------------~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk 330 (338)
T KOG0265|consen 294 DTTSR-------------------------RILYKLPGHYGSVNEVDFHPTEP-IILSCSSDK 330 (338)
T ss_pred ecccc-------------------------cEEEEcCCcceeEEEeeecCCCc-EEEEeccCc
Confidence 99876 3445555555 699999999998 666676664
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=252.18 Aligned_cols=245 Identities=20% Similarity=0.346 Sum_probs=212.0
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-.-+|.+.+|.+-. +.+++|++|..|+||++++ ...+..|..|.+-|.+++.+|..+
T Consensus 54 ~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt---------------------~ekV~~FeAH~DyIR~iavHPt~P- 110 (794)
T KOG0276|consen 54 SEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT---------------------GEKVKTFEAHSDYIRSIAVHPTLP- 110 (794)
T ss_pred cccchhhheeeecc-ceEEEecCCceEEEEeccc---------------------ceeeEEeeccccceeeeeecCCCC-
Confidence 34678888888876 7889999999999999998 778899999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++|++.|-.|++||-... |.. .+.|.||+..|.+++|+|.+++.||+||.|++|++|.+.+.. +..++.+|...|
T Consensus 111 ~vLtsSDDm~iKlW~we~~--wa~-~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGV 186 (794)
T KOG0276|consen 111 YVLTSSDDMTIKLWDWENE--WAC-EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGV 186 (794)
T ss_pred eEEecCCccEEEEeeccCc--eee-eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCc
Confidence 9999999999999998653 332 477999999999999999999999999999999999999875 888999999999
Q ss_pred EEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCC
Q 039302 328 NVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 328 ~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~ 406 (479)
||+++-+.+ ..+|++|++|.+|+|||..+.. ++.++.+|...|..+.|+|.- .+|+|||+||+|+||+-.+-+.
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~----CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKS----CVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHH----HHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceeh
Confidence 999998755 4699999999999999999988 899999999999999999965 8999999999999999887653
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
+. .+. -|-..|++++-++... .++.|.+.|+.+.++..
T Consensus 262 E~---------------------tLn---~gleRvW~I~~~k~~~-~i~vG~Deg~i~v~lgr 299 (794)
T KOG0276|consen 262 EK---------------------TLN---YGLERVWCIAAHKGDG-KIAVGFDEGSVTVKLGR 299 (794)
T ss_pred hh---------------------hhh---cCCceEEEEeecCCCC-eEEEeccCCcEEEEccC
Confidence 21 111 2235788998888764 67778888776666643
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=251.15 Aligned_cols=267 Identities=19% Similarity=0.311 Sum_probs=207.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
..+..+|...+++++++|+| .++|||++||.|+|||... +-++.+|..|+..|+++.|
T Consensus 343 VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S---------------------gfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS---------------------GFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC---------------------ceEEEEeccCCCceEEEEE
Confidence 35778999999999999999 8999999999999999987 7899999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCceeeE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDG-NIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg-~I~iwD~~~~~~~~~~ 319 (479)
+..+. .+++.+.||+|+.||+....... +|.. ..-...|++..|.|. ++++|+.|. .|.+|++.+++ .+-.
T Consensus 401 ~~~g~-~llssSLDGtVRAwDlkRYrNfR----Tft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq-llDi 473 (893)
T KOG0291|consen 401 TARGN-VLLSSSLDGTVRAWDLKRYRNFR----TFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ-LLDI 473 (893)
T ss_pred EecCC-EEEEeecCCeEEeeeecccceee----eecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe-eeeh
Confidence 99998 99999999999999998765533 2322 233567899999998 788887775 59999999996 7778
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|.++|.+++|+|.+ ..|++||.|.+|++||+-.... .+.++. +...++.++|+|++ ..||++..||.|.+|
T Consensus 474 LsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~---~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG---TVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFF 547 (893)
T ss_pred hcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc---eeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEE
Confidence 89999999999999999 8999999999999999976653 455555 57789999999965 999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCC-ceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPP-QLLFIHQG-QKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
|............ . .......... .....+.. .+..+.++++++|..+|+.|-...|+||+..+
T Consensus 548 d~~~~~q~~~Idg-----r-kD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 548 DIKEAVQVGSIDG-----R-KDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred Ehhhceeeccccc-----h-hhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 9987642210000 0 0000000000 11111221 13699999999997444444444499998754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=254.86 Aligned_cols=249 Identities=20% Similarity=0.289 Sum_probs=221.5
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+..|...|-+|.++|..|-+|++ -.+|.|.||+.++ ...+..|.-...+|.+..|-+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~-LynG~V~IWnyet---------------------qtmVksfeV~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAA-LYNGDVQIWNYET---------------------QTMVKSFEVSEVPVRAAKFIAR 66 (794)
T ss_pred hhccCCceeeeecCCCCceEEEe-eecCeeEEEeccc---------------------ceeeeeeeecccchhhheeeec
Confidence 44589999999999999766655 8899999999998 5667778777789999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
.+ .+++|+.|..|+||+.++..+ ...|.+|...|++|+.+|+.+ +++++|+|-+|++||-...-.+.+++.+|.
T Consensus 67 kn-Wiv~GsDD~~IrVfnynt~ek----V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 67 KN-WIVTGSDDMQIRVFNYNTGEK----VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred cc-eEEEecCCceEEEEeccccee----eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 87 999999999999999998766 366999999999999999999 999999999999999998877889999999
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC-CCEEEEEeCCCcEEEEECCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-~~~las~s~Dg~I~iwdl~~ 403 (479)
..|.+++|+|...+.+|+++-|++|+||.+.+.. +..++.+|...|++|.+-+-+ ..+|+||+.|.+|+|||..+
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCC----CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 9999999999999999999999999999999888 899999999999999998732 35999999999999999998
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..+. +.+..|. ..|+.+.|||.-| +++||++|| ++||+....
T Consensus 217 k~CV----------------------~TLeGHt--~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 217 KSCV----------------------QTLEGHT--NNVSFVFFHPELP-IIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred HHHH----------------------HHhhccc--ccceEEEecCCCc-EEEEecCCccEEEecCcce
Confidence 7653 3455554 4699999999998 999999999 999987554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=238.35 Aligned_cols=311 Identities=18% Similarity=0.232 Sum_probs=242.6
Q ss_pred hhHHHhhhcccccCceeeEEEeeCCCCC-CcccCCceE-EEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCC
Q 039302 58 PTAYNSLHAFHIGWPCLSFDILRDTLGL-VRNEFPYTA-YFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDE 135 (479)
Q Consensus 58 ~~~Y~~~~~~~~~wP~ls~~~~~d~~~~-~~~~~~~~~-~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~ 135 (479)
-++|....+....-||-+.+++.++..+ .-..|.++. ||+. .+++....||++...
T Consensus 199 vsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAs-----aSkD~Taiiw~v~~d----------------- 256 (519)
T KOG0293|consen 199 VSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLAS-----ASKDSTAIIWIVVYD----------------- 256 (519)
T ss_pred hhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEee-----ccCCceEEEEEEecC-----------------
Confidence 3678888889999999999999997643 234454443 4443 357788999999420
Q ss_pred CCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCC
Q 039302 136 DADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGH 215 (479)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~ 215 (479)
..-.+..++.+|..+|.-+.|+|+. +++++|+.+..+.+||+.+
T Consensus 257 ---------------------~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t-------------- 300 (519)
T KOG0293|consen 257 ---------------------VHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT-------------- 300 (519)
T ss_pred ---------------------cceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc--------------
Confidence 1345667899999999999999999 5666678888899999988
Q ss_pred CCCccccCCCcEEec-CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCC
Q 039302 216 GAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTES 293 (479)
Q Consensus 216 ~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~ 293 (479)
+.....+. +|...+.+++|.|++. .+++|+.|++|..||+..... ....+- ...|.+++.+++|+
T Consensus 301 -------gd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~-----~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 301 -------GDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNIL-----GNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred -------chhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchh-----hcccccccceeEEEEEcCCCc
Confidence 34433332 3456899999999998 999999999999999965322 222222 25699999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
.+++.+.|..|++++..+.. ... +..-..+|++++.+.++ .++++.-.+..|++||+.... .+..+.||+..
T Consensus 368 -~vl~v~~d~~i~l~~~e~~~-dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~----lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 368 -YVLLVTVDKKIRLYNREARV-DRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK----LVRKYFGHKQG 439 (519)
T ss_pred -EEEEEecccceeeechhhhh-hhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh----HHHHhhccccc
Confidence 67777789999999988753 222 33345689999999999 888888999999999999665 78889998765
Q ss_pred --eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCC
Q 039302 374 --VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQV 450 (479)
Q Consensus 374 --I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~ 450 (479)
|..-+|--.+..++|+||+|+.|+||+..+++ ++..-.||. .|++|+|+|..
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-------------------------ll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-------------------------LLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCc-------------------------eeEeecCCcceeeEEecCCCC
Confidence 44445665555899999999999999998883 455555665 69999999999
Q ss_pred CcEEEEEcCCC-ceEEeeeccCC
Q 039302 451 PGMIVSTAADG-FNILMPSNIQS 472 (479)
Q Consensus 451 ~~ll~s~~~dg-i~iw~~~~~~~ 472 (479)
|.++||+++|| |+||.+....+
T Consensus 495 p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred HHHhhccCCCCeEEEecCCcccc
Confidence 99999999999 99999876533
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-29 Score=234.65 Aligned_cols=244 Identities=27% Similarity=0.449 Sum_probs=202.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.....|...+..+.|+|++ .++++++.+|.|++|++.. .+.+..+..|...+.++.|+
T Consensus 45 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~---------------------~~~~~~~~~~~~~i~~~~~~ 102 (289)
T cd00200 45 RTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET---------------------GECVRTLTGHTSYVSSVAFS 102 (289)
T ss_pred EEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc---------------------ccceEEEeccCCcEEEEEEc
Confidence 4567889999999999998 6888889999999999987 45667788898899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+++. ++++++.+|.|++|++.+.... ..+..|...|.+++|+|++. ++++++.+|.|++||++..+ .+..+..
T Consensus 103 ~~~~-~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~-~~~~~~~ 175 (289)
T cd00200 103 PDGR-ILSSSSRDKTIKVWDVETGKCL----TTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGK-CVATLTG 175 (289)
T ss_pred CCCC-EEEEecCCCeEEEEECCCcEEE----EEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccc-cceeEec
Confidence 9976 8888888999999999854432 33557888999999999976 78888789999999999775 6677788
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...+.+++|+|++ ..|++++.+|.|++||++... .+..+..|..+|.++.|+|+ +.++++++.|+.|++|++.
T Consensus 176 ~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 176 HTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CccccceEEECCCc-CEEEEecCCCcEEEEECCCCc----eecchhhcCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcC
Confidence 88899999999998 788888889999999999876 67888789999999999996 5888888889999999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
..... ..+..| ...|.+++|+|++. ++++++.++ +++|+
T Consensus 250 ~~~~~----------------------~~~~~~--~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TGECV----------------------QTLSGH--TNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred CceeE----------------------EEcccc--CCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 65310 112222 24799999999975 677777777 88885
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=225.37 Aligned_cols=246 Identities=19% Similarity=0.365 Sum_probs=203.4
Q ss_pred eEEEEecCCCcEEEEEe-------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 173 NRIRAMSQNPHICASWA-------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s-------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+++|+|--++.||.+. ..|++.|-++.... .......+ .-.+.++.++|++..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~------------------gi~e~~s~-d~~D~LfdV~Wse~~ 72 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK------------------GIQECQSY-DTEDGLFDVAWSENH 72 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC------------------CeEEEEee-ecccceeEeeecCCC
Confidence 57889996544444432 36889999986410 11222233 235689999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.+.+++++.||+++|||+..... ++..++.|...|.++.|++..+..|+++|-|++|++|+...++ .+.++.+|..
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNS 148 (311)
T ss_pred cceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCcc
Confidence 98999999999999999654333 3477899999999999999988899999999999999998875 7889999999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|....|+|..++++++++.||++++||+|.... ...+..|...|.++.|+..+.++|+||+.|+.|++||++..+
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 9999999999999999999999999999998763 444999999999999999899999999999999999999884
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.| ++.-.||. .|+.++|+|....+|+|++.|- ++||++..
T Consensus 225 ---------------------~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 225 ---------------------TP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred ---------------------cc---ceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 22 33334444 7999999999989999999998 89998853
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=222.63 Aligned_cols=247 Identities=20% Similarity=0.299 Sum_probs=209.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|+++|+.++|+-+| ++++|++.|.+|++|+.-. +..+.++.+|..+|..++.+
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r---------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR---------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc---------------------cceeeeecCCCceeeecccc
Confidence 3567899999999999999 7888999999999999887 78999999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~ 321 (479)
.++. .|++|+.|..|.+||+++++. .+.+.+|.+.|+.++|+.... ++++|+.|.++++||.|+.. .|++.+.
T Consensus 69 ~Dns-kf~s~GgDk~v~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 69 SDNS-KFASCGGDKAVQVWDVNTGKV----DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccc-ccccCCCCceEEEEEcccCee----eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh
Confidence 9997 999999999999999999766 467999999999999998877 99999999999999999874 3778887
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.....|.+|..+. ..|++|+.||+++.||+|.+. ..... -..||++++|++++ +..++++.|++|++.|-
T Consensus 143 ea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~----l~sDy--~g~pit~vs~s~d~-nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 143 EAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT----LSSDY--FGHPITSVSFSKDG-NCSLASSLDSTLRLLDK 212 (307)
T ss_pred hhcCceeEEEecc---cEEEeeccCCcEEEEEeecce----eehhh--cCCcceeEEecCCC-CEEEEeeccceeeeccc
Confidence 7788899999885 789999999999999999987 33333 45699999999955 89999999999999998
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+++-- +....|....-=.+++++... ..++++++|| +.+|++-+-
T Consensus 213 ~tGklL----------------------~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 213 ETGKLL----------------------KSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred chhHHH----------------------HHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccc
Confidence 887421 122334332334566677665 4899999999 999998653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=269.52 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=199.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+...|.++.|++....+||+++.||+|+|||+.. .+.+..+.+|...|++++|+|...
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------~~~~~~~~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------SQLVTEMKEHEKRVWSIDYSSADP 588 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------CeEEEEecCCCCCEEEEEEcCCCC
Confidence 45678999999987668899999999999999986 566778899999999999997443
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
.+|++|+.||.|++||+.++... ..+.. ...|.++.|++....+|++|+.||.|++||++..+.++..+.+|...
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~~~----~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGVSI----GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCcEE----EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 49999999999999999875432 22333 36799999966544499999999999999999876566778899999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|.++.|. ++ .+|++++.|++|+|||++.... ...++..+.+|...++++.|+|++ .+|++|+.|+.|++|+....
T Consensus 664 V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 664 VSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence 9999997 44 6899999999999999986421 123788999999999999999965 89999999999999998654
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
..... + ........+ . +..+.+...|.+++|+|++. +|++++.+| |+||++
T Consensus 741 ~~~~s---~------~~~~~~~~~-~-~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLS---Y------KFKTIDPVS-G-LEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred CceEE---E------ecccCCccc-c-cccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 21000 0 000000000 0 11122224699999999996 566666666 999986
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=232.77 Aligned_cols=279 Identities=19% Similarity=0.375 Sum_probs=232.3
Q ss_pred CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCc
Q 039302 91 PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQG 170 (479)
Q Consensus 91 ~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~ 170 (479)
|.+.+|+.| +.+..|.||++. ..++...+.+|..
T Consensus 161 P~n~wf~tg-----s~DrtikIwDla-----------------------------------------tg~LkltltGhi~ 194 (460)
T KOG0285|consen 161 PGNEWFATG-----SADRTIKIWDLA-----------------------------------------TGQLKLTLTGHIE 194 (460)
T ss_pred CCceeEEec-----CCCceeEEEEcc-----------------------------------------cCeEEEeecchhh
Confidence 556778876 478899999883 4567789999999
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|..+++++-.+ ++.+++.|+.|+.||+.. .+.+..+.||-..|+||+.+|.-. .|+
T Consensus 195 ~vr~vavS~rHp-YlFs~gedk~VKCwDLe~---------------------nkvIR~YhGHlS~V~~L~lhPTld-vl~ 251 (460)
T KOG0285|consen 195 TVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY---------------------NKVIRHYHGHLSGVYCLDLHPTLD-VLV 251 (460)
T ss_pred eeeeeeecccCc-eEEEecCCCeeEEEechh---------------------hhhHHHhccccceeEEEeccccce-eEE
Confidence 999999999885 566889999999999997 678889999999999999999988 999
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
+|+.|.+++|||+++... ...+.||..+|.++.+.|.++ .+++||.|++|++||++.++ .+..+..|...|.++
T Consensus 252 t~grDst~RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral 325 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRAS----VHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRAL 325 (460)
T ss_pred ecCCcceEEEeeecccce----EEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCc-eeEeeecccceeeEE
Confidence 999999999999998654 356889999999999999998 89999999999999999997 677889999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
+.+|.. +.||+++.| .|+-|++..+. .+..+.+|+.-|++++.+.+ .++++|+..|.+.+||.+.+......
T Consensus 326 ~lhP~e-~~fASas~d-nik~w~~p~g~----f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 326 CLHPKE-NLFASASPD-NIKQWKLPEGE----FLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ecCCch-hhhhccCCc-cceeccCCccc----hhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecCcCcccccc
Confidence 999998 899999887 58999999887 67779999999999999873 69999999999999999987532111
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+. ...|-.+ .....|.+.+|...+. -|+++..|. |++|+-..
T Consensus 398 ~t-------------~vqpGSl---~sEagI~as~fDktg~-rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 398 QT-------------IVQPGSL---ESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDE 440 (460)
T ss_pred cc-------------cccCCcc---ccccceeEEeecccCc-eEEeccCCcceEEEeccc
Confidence 00 0111111 1224699999999986 455555554 99997543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=242.94 Aligned_cols=247 Identities=19% Similarity=0.321 Sum_probs=207.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|++.+|++.. ++||+|=..|...+|.+.. ...++.+.-...+|..++|+..|. .
T Consensus 265 ~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~---------------------f~lih~LSis~~~I~t~~~N~tGD-W 321 (893)
T KOG0291|consen 265 SSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPD---------------------FNLIHSLSISDQKILTVSFNSTGD-W 321 (893)
T ss_pred ccceeeeeccCCc-eEEEEEecCCeeEEEecCC---------------------ceEEEEeecccceeeEEEecccCC-E
Confidence 3789999999966 8999999999999999987 677788877778999999999998 8
Q ss_pred EEEEeCC-CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDCN-SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
||.|+.. |.+.||+.....- ....++|...+++++++|+|. ++|+|+.||.|+|||.+++- |..++..|++.|
T Consensus 322 iA~g~~klgQLlVweWqsEsY----VlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~V 395 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESY----VLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGV 395 (893)
T ss_pred EEEcCCccceEEEEEeeccce----eeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCce-EEEEeccCCCce
Confidence 8887754 7999999976432 245779999999999999999 99999999999999999985 899999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC----------------------------------------CCceEEEe
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKG----------------------------------------GDSVVAHF 367 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~----------------------------------------~~~~~~~~ 367 (479)
+.++|+..+ +.+++.+-||+|+.||+..... .++.+-.+
T Consensus 396 t~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 396 TAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred EEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 999999999 9999999999999999864432 02345556
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe
Q 039302 368 EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH 447 (479)
Q Consensus 368 ~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~ 447 (479)
.+|.+||.+++|+|.+ ..|+++|.|.+|++||+-..... .+.+. + ...+..++|+
T Consensus 475 sGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---------------------vEtl~-i--~sdvl~vsfr 529 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---------------------VETLE-I--RSDVLAVSFR 529 (893)
T ss_pred cCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCce---------------------eeeEe-e--ccceeEEEEc
Confidence 7999999999999965 89999999999999999655211 11121 2 2479999999
Q ss_pred CCCCcEEEEEcCCCceEEeeecc
Q 039302 448 TQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 448 p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
|+|..+.+++-++.|.+|++...
T Consensus 530 PdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhc
Confidence 99987777777767999998765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=255.58 Aligned_cols=248 Identities=24% Similarity=0.370 Sum_probs=207.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|...|++++|+|++ .++++++.|++|+|||+.. ....+.++.+|...|++++|+|
T Consensus 198 ~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~--------------------~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD--------------------DGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred cccccccceeeeEECCCC-cEEEEecCCceEEEeeccC--------------------CCeEEEEecCCCCceEEEEecC
Confidence 347999999999999999 6999999999999999954 3678899999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEec
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKA 322 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~ 322 (479)
.+. ++++|+.|++|+|||++++.. ...+.+|...|++++|++++. +|++++.|+.|+|||+.++.. ++..+..
T Consensus 257 ~g~-~i~Sgs~D~tvriWd~~~~~~----~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 257 DGN-LLVSGSDDGTVRIWDVRTGEC----VRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred CCC-EEEEecCCCcEEEEeccCCeE----EEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccC
Confidence 995 999999999999999988544 366899999999999999999 999999999999999999863 2445555
Q ss_pred CCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe---EEEEEeCCCCCEEEEEeCCCcEE
Q 039302 323 HNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV---TSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 323 h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I---~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.. .+++++|+|++ .+|++++.|+.+++||++... .+..+.+|...+ .+...++ ++.++++|+.|+.|.
T Consensus 331 ~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 331 AENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK----SVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVY 404 (456)
T ss_pred CCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc----ceeeecccCCcceeEecccccC-CCCeEEEEeCCceEE
Confidence 554 49999999999 999999999999999999988 788888888754 3334455 559999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc--CCC-ceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA--ADG-FNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~--~dg-i~iw~~~ 468 (479)
+|++...... +.+..|. ...|..+.|||... ++++.+ .|+ +++|+..
T Consensus 405 ~~~~~s~~~~----------------------~~l~~h~-~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 405 VWDSSSGGIL----------------------QRLEGHS-KAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCccchh----------------------hhhcCCC-CCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 9999975321 3344443 35799999999985 777777 454 8888753
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=253.24 Aligned_cols=260 Identities=23% Similarity=0.355 Sum_probs=209.8
Q ss_pred CceeEEEEecC-CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 158 TPILQLRKVAH-QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H-~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
.+.+...+..| ...|.++.|+++| ..+++++.++.+++|+..... ...+..+.+|...|
T Consensus 147 ~~~~~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~-------------------~~~~~~l~~h~~~v 206 (456)
T KOG0266|consen 147 VFSLEQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIK-------------------SNLLRELSGHTRGV 206 (456)
T ss_pred cceeeeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeeccccc-------------------chhhccccccccce
Confidence 33443344444 7899999999999 568899999999999995510 02556668999999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++++|+|++. ++++|+.|++|+|||+...... .+.+.+|...|++++|+|.+. ++++|+.|++|+|||++++. +
T Consensus 207 ~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~---~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~-~ 280 (456)
T KOG0266|consen 207 SDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRN---LKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGE-C 280 (456)
T ss_pred eeeEECCCCc-EEEEecCCceEEEeeccCCCeE---EEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCe-E
Confidence 9999999998 9999999999999999443232 356889999999999999995 99999999999999999975 8
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC--eEEEEEeCCCCCEEEEEeCCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP--VTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~--I~~v~~sp~~~~~las~s~Dg 394 (479)
+..+.+|...|++++|++++ .+|++++.|+.|+|||+.++... ++..+..+..+ +++++|+|++ .+|++++.|+
T Consensus 281 ~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~ 356 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDR 356 (456)
T ss_pred EEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC-cEEEEecCCC
Confidence 89999999999999999999 89999999999999999998731 24566665555 9999999965 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+++||++..... .....|... ..+.+...++.+. ++++++.|+ |.+|++.+.
T Consensus 357 ~~~~w~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 357 TLKLWDLRSGKSV----------------------GTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eEEEEEccCCcce----------------------eeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCcc
Confidence 9999999987532 223333322 1344445566665 788888888 999998864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=220.43 Aligned_cols=261 Identities=20% Similarity=0.324 Sum_probs=207.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....|...|..+...-.| ..||||+.|++|+||.+.... ..+++.++.||.++|+.++|..
T Consensus 6 idt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~------------------~s~ll~~L~Gh~GPVwqv~wah 66 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNG------------------QSKLLAELTGHSGPVWKVAWAH 66 (299)
T ss_pred hhhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCC------------------CceeeeEecCCCCCeeEEeecc
Confidence 345788888887777777 789999999999999998731 1367889999999999999986
Q ss_pred --CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCC-c-eee
Q 039302 244 --VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGK-S-ALM 318 (479)
Q Consensus 244 --~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~-~-~~~ 318 (479)
.|. +||+++.||.|.||.-..+ .|.. ...+..|.++|++++|-|.+- .+|++++.||.|.|.+.+... . ...
T Consensus 67 Pk~G~-iLAScsYDgkVIiWke~~g-~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 67 PKFGT-ILASCSYDGKVIIWKEENG-RWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred cccCc-EeeEeecCceEEEEecCCC-chhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 555 9999999999999998665 5442 355778999999999999763 368889999999999998762 1 233
Q ss_pred EEecCCCCEEEEEEcCCC-------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 319 SFKAHNADVNVISWNRLA-------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~-------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
...+|.-.|++++|.|.. ...|++|+.|..|+||+..+.. ...-.+|.+|++.|+.++|.|.-
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCC
Confidence 458899999999999862 1469999999999999998864 33455699999999999999964
Q ss_pred -CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCc
Q 039302 384 -GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGF 462 (479)
Q Consensus 384 -~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi 462 (479)
...||++|.||+|.||-.+.+..+ . +....+.....+..+.|++.+..|.++++++.|
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~-------------------w--k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEP-------------------W--KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCc-------------------c--cccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 258999999999999998844221 1 112223333579999999999866677777779
Q ss_pred eEEeeec
Q 039302 463 NILMPSN 469 (479)
Q Consensus 463 ~iw~~~~ 469 (479)
.+|+..-
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9998753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=251.48 Aligned_cols=264 Identities=19% Similarity=0.323 Sum_probs=200.7
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcc------ccc------------cc-cccc--------------
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLN------ALA------------ES-ETVA-------------- 213 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~------~~~------------~~-~~~~-------------- 213 (479)
+|.+.|+++.|+++| ++||+|+.||.|+||.+..... ... .+ ....
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 799999999999999 8999999999999999876110 000 00 0000
Q ss_pred ------CCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEE
Q 039302 214 ------GHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287 (479)
Q Consensus 214 ------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~ 287 (479)
..........+|+..|.||.+.|..|.|+.++ +|++++.|.+|+||++..... .....|...|+||+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C-----L~~F~HndfVTcVa 416 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC-----LKVFSHNDFVTCVA 416 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcce-----eeEEecCCeeEEEE
Confidence 00000012457888899999999999999876 899999999999999986544 23567999999999
Q ss_pred ECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe
Q 039302 288 WSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 288 ~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
|+|.+.++|++|+.||.||||++...+ +.....-..-|++++|.|+| ...+.|+.+|.+++|+.+..+ ....+
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk----~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLK----LVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCe----EEEee
Confidence 999998899999999999999998864 33343344789999999998 899999999999999999877 34333
Q ss_pred ec--C------CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC
Q 039302 368 EY--H------KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK 439 (479)
Q Consensus 368 ~~--h------~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~ 439 (479)
.- | ...||.++|.|.....+++.+.|.+|+|+|++...-. ..+..+....
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv----------------------~KfKG~~n~~ 547 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV----------------------HKFKGFRNTS 547 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh----------------------hhhcccccCC
Confidence 21 1 2279999999977777888899999999999654311 2222222223
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 440 DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
.-....|..++. .|+++++|. |+||+..
T Consensus 548 SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 548 SQISASFSSDGK-HIVSASEDSWVYIWKND 576 (712)
T ss_pred cceeeeEccCCC-EEEEeecCceEEEEeCC
Confidence 455678889886 666666777 9999973
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=210.80 Aligned_cols=210 Identities=22% Similarity=0.306 Sum_probs=181.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|..+.|.-+| +.++|||+||+++|||+.. ..+...+ .|..+|+++..+
T Consensus 77 ~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~---------------------~~~qR~~-~~~spVn~vvlh 133 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRS---------------------LSCQRNY-QHNSPVNTVVLH 133 (311)
T ss_pred eEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccC---------------------cccchhc-cCCCCcceEEec
Confidence 4788999999999999999 8999999999999999987 2333334 467899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-----cee
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-----SAL 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-----~~~ 317 (479)
|+.. .|++|+.+|.|++||+....... ........+|.++...|+|. .++.+...|...+|++-... .++
T Consensus 134 pnQt-eLis~dqsg~irvWDl~~~~c~~---~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 134 PNQT-ELISGDQSGNIRVWDLGENSCTH---ELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred CCcc-eEEeecCCCcEEEEEccCCcccc---ccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEh
Confidence 9987 99999999999999998753321 22333446899999999999 99999999999999987642 267
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.++.+|...+..+.++|++ ++||++|.|.+++||+....-. ....+.+|..+++..+||.++ .+|++|+.|++++
T Consensus 209 ~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~k---le~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~r 283 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFK---LELVLTGHQRWVWDCAFSADG-EYLVTASSDHTAR 283 (311)
T ss_pred hheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCcee---eEEEeecCCceEEeeeeccCc-cEEEecCCCCcee
Confidence 7889999999999999999 9999999999999999998732 677889999999999999955 9999999999999
Q ss_pred EEECCCCC
Q 039302 398 IWDLSLEK 405 (479)
Q Consensus 398 iwdl~~~~ 405 (479)
+|+++..+
T Consensus 284 lW~~~~~k 291 (311)
T KOG0315|consen 284 LWDLSAGK 291 (311)
T ss_pred ecccccCc
Confidence 99999885
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=246.92 Aligned_cols=253 Identities=20% Similarity=0.300 Sum_probs=214.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.++.|..++|..++|.-.....+|.+++.+.+++|++.. ..+ ..+.||...|.+|+..
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~---------------------~~c-~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT---------------------SYC-QIIPGHTEAVLSLDVW 374 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC---------------------Cce-EEEeCchhheeeeeec
Confidence 456788999999999987778899999999999998776 222 3788999999999955
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc----eee
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----ALM 318 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----~~~ 318 (479)
.+|. +|+||+.|.++++|.++.+...........+|+..|.+++++..+..+|+++|.|.+|++|+++..+. ...
T Consensus 375 ~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 5565 99999999999999996554444445667899999999999999988999999999999999987321 111
Q ss_pred ----EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 319 ----SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 319 ----~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
...+|...||+++.+|+. .+|||||.|.+.+||++.... ...++.+|+..|++|.|+|.+ .++||+|.|.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~----l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~ 527 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLR----LLGVLSGHTRGVWCVSFSKND-QLLATCSGDK 527 (775)
T ss_pred hhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCce----EEEEeeCCccceEEEEecccc-ceeEeccCCc
Confidence 236899999999999999 999999999999999999766 899999999999999999976 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+|+||.+....+ +....||. .|..+.|-.++. .|+|++.|| +++|++.+-
T Consensus 528 TvKIW~is~fSC-------------------------lkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 528 TVKIWSISTFSC-------------------------LKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eEEEEEecccee-------------------------eeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccch
Confidence 999999998743 33334444 799999999986 677777788 999998764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=253.61 Aligned_cols=243 Identities=22% Similarity=0.434 Sum_probs=210.8
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
-.++.|+|.....++|||++..|.|.+||++... ..+.+..|..|...+.+++|++..+++|
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------rnk~l~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------RNKLLTVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccc------------------cchhhhHhhhhccceeeeeeccCCccEE
Confidence 3567788987668999999999999999998731 2456678899999999999999999999
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
+||+.||.|++||++.... ...+.+...+|++++|+|...+.|+++.+.|.+++||+|....+...+.+|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 9999999999999987654 355777888999999999998899999999999999999998889999999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC--CCcEEEEECCCCCCh
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA--DNQLTIWDLSLEKDE 407 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~--Dg~I~iwdl~~~~~~ 407 (479)
+.|+|++ .+|||||.|+.|+|||+..... .++.++. -..+|.+|+|-|...+.||+++. |-.|+|||++..
T Consensus 226 ~nwhPnr-~~lATGGRDK~vkiWd~t~~~~--~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--- 298 (839)
T KOG0269|consen 226 LNWHPNR-EWLATGGRDKMVKIWDMTDSRA--KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--- 298 (839)
T ss_pred EeecCCC-ceeeecCCCccEEEEeccCCCc--cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc---
Confidence 9999977 9999999999999999986652 2455554 36799999999998889999886 789999999987
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
-+|...+..|. ..++.++|-...+.++.+++.|+
T Consensus 299 ------------------YIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 299 ------------------YIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred ------------------cccceeeeccC--ccccceeccCCCceeeEeecCcc
Confidence 55666666665 56999999887778999999998
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=228.82 Aligned_cols=257 Identities=19% Similarity=0.318 Sum_probs=203.7
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---CCCCceEE
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---GHKDEGYA 238 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~ 238 (479)
......|..-|+|++|+|+| .++||.+.||+|.|||-.+ ++.+..+. +|.+.|++
T Consensus 183 k~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt---------------------ge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT---------------------GEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC---------------------ccEEEEecCCCCccccEEE
Confidence 34567899999999999999 7899999999999999877 55566666 89999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCcc---------------------------------------ccCCCCcccC
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATW---------------------------------------NVDPNPFIGH 279 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~---------------------------------------~~~~~~~~~h 279 (479)
|+|+|++. +|+|++.|.+++|||+.+.... ......+.+|
T Consensus 241 lsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH 319 (603)
T KOG0318|consen 241 LSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH 319 (603)
T ss_pred EEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc
Confidence 99999998 9999999999999999764310 0012345689
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce----------eeEEecC--------------------------
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA----------LMSFKAH-------------------------- 323 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~----------~~~~~~h-------------------------- 323 (479)
...|+++..+|++. .|.+|+.||.|.-||..++... +..+..+
T Consensus 320 nK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 320 NKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred ccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence 99999999999997 9999999999999998654211 0000000
Q ss_pred --------------------------------------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 039302 324 --------------------------------------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 324 --------------------------------------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~ 359 (479)
.-...+++++|++ ..+|.|+.||.|+||.+.....
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcc
Confidence 0013467788888 8999999999999999987552
Q ss_pred CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC
Q 039302 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK 439 (479)
Q Consensus 360 ~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~ 439 (479)
.....+..|.++|++|+++|++ .+||+|...+.|.+||+..... ...-...|. .
T Consensus 478 --~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~---------------------~~~~w~FHt--a 531 (603)
T KOG0318|consen 478 --KEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV---------------------KTNRWAFHT--A 531 (603)
T ss_pred --cceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce---------------------ecceeeeee--e
Confidence 1445667799999999999965 9999999999999999987631 112233344 5
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 440 DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.|.+++|+|+.. ++|+++.|. |.||.+..-
T Consensus 532 kI~~~aWsP~n~-~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 532 KINCVAWSPNNK-LVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence 799999999985 999999998 999987653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=251.92 Aligned_cols=322 Identities=22% Similarity=0.345 Sum_probs=239.6
Q ss_pred eeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 039302 73 CLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEE 152 (479)
Q Consensus 73 ~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (479)
-+++++-||. ..+.+|.|-. +..+.||+...+..... +.++
T Consensus 16 IfSIdv~pdg-----------~~~aTgGq~~---d~~~~iW~~~~vl~~~~-------------------------~~~~ 56 (942)
T KOG0973|consen 16 IFSIDVHPDG-----------VKFATGGQVL---DGGIVIWSQDPVLDEKE-------------------------EKNE 56 (942)
T ss_pred EEEEEecCCc-----------eeEecCCccc---cccceeeccccccchhh-------------------------hhhc
Confidence 4678888873 3577776543 45566998854321111 0111
Q ss_pred CCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC
Q 039302 153 EGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH 232 (479)
Q Consensus 153 ~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 232 (479)
..|........|.+.|+|++|+|+| .+||+||+|+.|.||.... ....... -...+.......+...++.+|
T Consensus 57 ----~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~-~~~~~~f--gs~g~~~~vE~wk~~~~l~~H 128 (942)
T KOG0973|consen 57 ----NLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAE-IGSGTVF--GSTGGAKNVESWKVVSILRGH 128 (942)
T ss_pred ----ccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecc-cCCcccc--cccccccccceeeEEEEEecC
Confidence 1355667899999999999999999 8999999999999999885 1000000 001223334467888999999
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
...|..++|+|++. +|++++.|++|.||+..+... ...+.+|.+.|..+.|.|-|+ +||+-+.|++|+||.+..
T Consensus 129 ~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD 202 (942)
T ss_pred CCccceeccCCCcc-EEEEecccceEEEEcccccee----eeeeecccccccceEECCccC-eeeeecCCceEEEEEccc
Confidence 99999999999998 999999999999999988633 367899999999999999999 999999999999999776
Q ss_pred CCceeeEEecC------CCCEEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 313 GKSALMSFKAH------NADVNVISWNRLASCLLASGSD----DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 313 ~~~~~~~~~~h------~~~v~~l~~~p~~~~~l~sgs~----dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.. ....+..+ ..-+..++|+|+| .+|++.-. -.++.|.+..+.+ .-..|-+|.++++++.|+|.
T Consensus 203 w~-i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk----~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 203 WG-IEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWK----VDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ce-eeEeeccchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCce----eeeeeecCCCceEEEEeChH
Confidence 43 33343322 3457899999999 78877532 2378888887766 67889999999999999983
Q ss_pred -----C-------C----CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEE
Q 039302 383 -----E-------G----STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELH 445 (479)
Q Consensus 383 -----~-------~----~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~ 445 (479)
. . .++|+||.|++|.||.....+ .++..|. ....|.+++
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R------------------------Pl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR------------------------PLFVIHNLFNKSIVDMS 332 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC------------------------chhhhhhhhcCceeeee
Confidence 1 1 178999999999999996654 2333333 234799999
Q ss_pred EeCCCCcEEEEEcCCC-ceEEeeecc--CCCCCCCC
Q 039302 446 WHTQVPGMIVSTAADG-FNILMPSNI--QSTLPQDA 478 (479)
Q Consensus 446 w~p~~~~ll~s~~~dg-i~iw~~~~~--~~~~~ed~ 478 (479)
|+|+|- .|..|+.|| |.++++..- .+-++++|
T Consensus 333 WspdG~-~LfacS~DGtV~~i~Fee~ElG~~ls~ee 367 (942)
T KOG0973|consen 333 WSPDGF-SLFACSLDGTVALIHFEEKELGVALSEEE 367 (942)
T ss_pred EcCCCC-eEEEEecCCeEEEEEcchHHhCcccChhh
Confidence 999995 666777777 888877553 55555544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=228.23 Aligned_cols=246 Identities=26% Similarity=0.438 Sum_probs=205.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.|++++|+|++ .++++++.+|.|++|++.. ......+..|...+..+.|++
T Consensus 4 ~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~ 61 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLET---------------------GELLRTLKGHTGPVRDVAASA 61 (289)
T ss_pred HhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeC---------------------CCcEEEEecCCcceeEEEECC
Confidence 345899999999999998 6888889999999999987 456677888999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
++. .|++++.+|.|++|++..... ...+..|...+.++.|+|++. ++++++.+|.|++||+++.+ ....+..|
T Consensus 62 ~~~-~l~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 134 (289)
T cd00200 62 DGT-YLASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK-CLTTLRGH 134 (289)
T ss_pred CCC-EEEEEcCCCeEEEEEcCcccc----eEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE-EEEEeccC
Confidence 996 999999999999999987433 244667888999999999976 88888889999999999764 66677789
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...+.+++|+|++ .++++++.+|.|++||++..+ ++..+..|...|+++.|+|++ ..|++++.|+.|++||++.
T Consensus 135 ~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 135 TDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred CCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccc----cceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC
Confidence 9999999999997 888888889999999999777 678888999999999999965 7888888899999999987
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.... ..+..|. ..|.++.|+|++ .++++++.++ +.+|++..
T Consensus 209 ~~~~----------------------~~~~~~~--~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 209 GKCL----------------------GTLRGHE--NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred Ccee----------------------cchhhcC--CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC
Confidence 5311 1111232 479999999995 5777777555 99999864
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=221.97 Aligned_cols=363 Identities=17% Similarity=0.249 Sum_probs=261.6
Q ss_pred cccCcccccceeccCCCCCCCCCCCCCCeee--cCCc-ccCCCCceeeeC---------hhHHHhhhcccccCceeeEEE
Q 039302 11 TQRRPKERTRTQKKGNGSSSSSIPSLPTKVW--QPGV-DKLEEGEELQCD---------PTAYNSLHAFHIGWPCLSFDI 78 (479)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~d---------~~~Y~~~~~~~~~wP~ls~~~ 78 (479)
.+--|+|++..+...+++ -++..... -+- .|-+ .+...|-+|+|| |+-|+..+.....-||....+
T Consensus 43 ~~~~PserLl~lv~~gmq-~~~d~~~~-~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aaf 120 (430)
T KOG0640|consen 43 NICAPSERLLHLVAKGMQ-AENDGDLR-AVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAF 120 (430)
T ss_pred CCCCCHHHHHHHHHHHhh-cccCccee-cccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeeeee
Confidence 455689998888777655 22211110 000 0000 114456778887 677888888888999999998
Q ss_pred eeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 039302 79 LRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGT 158 (479)
Q Consensus 79 ~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (479)
-||.. .+.. |+.+-+|.|++++++-.... . .++.. .+.. ...
T Consensus 121 s~DG~-----------lvAT-----GsaD~SIKildvermlaks~-~------------~em~~-------~~~q--a~h 162 (430)
T KOG0640|consen 121 SPDGS-----------LVAT-----GSADASIKILDVERMLAKSK-P------------KEMIS-------GDTQ--ARH 162 (430)
T ss_pred CCCCc-----------EEEc-----cCCcceEEEeehhhhhhhcc-h------------hhhcc-------CCcc--cCC
Confidence 88842 3333 46788999999975433221 1 00100 0001 124
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
|.+ ..+..|..+|+++.|+|.. .+|++|+.|++|++||+.+... .+....|+ ...+|.+
T Consensus 163 PvI-RTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~sa------------------KrA~K~~q-d~~~vrs 221 (430)
T KOG0640|consen 163 PVI-RTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSA------------------KRAFKVFQ-DTEPVRS 221 (430)
T ss_pred ceE-eehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHH------------------HHHHHHhh-ccceeee
Confidence 655 6789999999999999988 8999999999999999987211 12222332 3458999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+.|+|.|. +|+.|..-..+++||+++.+... ...+-..|++.|+++.++++++ +.+++|.||.|+|||--+.+ |+.
T Consensus 222 iSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfv-sanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~r-Cv~ 297 (430)
T KOG0640|consen 222 ISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFV-SANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNR-CVR 297 (430)
T ss_pred EeecCCCc-eEEEecCCCceeEEeccceeEee-ecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHH-HHH
Confidence 99999998 99999999999999999866543 3457788999999999999999 99999999999999988875 666
Q ss_pred EE-ecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-----CCeEEEEEeCCCCCEEEEEe
Q 039302 319 SF-KAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-----HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~-~~h~-~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-----~~I~~v~~sp~~~~~las~s 391 (479)
++ ++|. ..|.+..|..++ .+|++.+.|..+++|.+.++. ++..+.+-. .--+...|+.+...+|.---
T Consensus 298 t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGR----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred HHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCc----eEEEEecCCcccchhhhhhhhhcCccceEEcccc
Confidence 66 5665 468999999999 999999999999999999988 677776531 11245567776544554444
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
..+.++-||.++.... ..+-..|. ..+..+.-+|.+| .+++|++|. .++|.-
T Consensus 373 as~slcsWdaRtadr~---------------------~l~slgHn--~a~R~i~HSP~~p-~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRV---------------------ALLSLGHN--GAVRWIVHSPVEP-AFMTCSDDFRARFWYR 425 (430)
T ss_pred ccCceeeccccchhhh---------------------hhcccCCC--CCceEEEeCCCCC-ceeeecccceeeeeee
Confidence 5778999999987531 01222332 4799999999998 677788887 888864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=260.26 Aligned_cols=258 Identities=19% Similarity=0.284 Sum_probs=200.0
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+..|.+.|++++|+|++ .++|||+.||.|+||++........ ....+...+.+ ...+.+++|++.
T Consensus 479 ~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-------------~~~~~~~~~~~-~~~v~~l~~~~~ 543 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-------------DIHYPVVELAS-RSKLSGICWNSY 543 (793)
T ss_pred ccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-------------ccccceEEecc-cCceeeEEeccC
Confidence 34589999999999998 7899999999999999864211000 00123344443 458999999987
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
...+|++|+.||+|+|||+.++.. ...+.+|...|++++|+|.+..+|++|+.||+|++||++++. ++..+..+
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~----~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~- 617 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQL----VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK- 617 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeE----EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-
Confidence 545999999999999999977543 245778999999999998544499999999999999999875 55566544
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
..|.++.|++..+.+|++|+.||.|++||+++... ++..+.+|...|+++.|.+ +.+|++++.|++|+|||++..
T Consensus 618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~~--~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEeC--CCEEEEEECCCEEEEEeCCCC
Confidence 67999999765459999999999999999998653 5778889999999999974 478999999999999999754
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
... .....+....+| ..+..++|+|++. +|++++.|+ +.+|+..
T Consensus 693 ~~~-------------------~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 693 ISG-------------------INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKA 738 (793)
T ss_pred ccc-------------------cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECC
Confidence 210 001122223333 3688999999985 888888888 9999853
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=249.14 Aligned_cols=249 Identities=21% Similarity=0.333 Sum_probs=212.8
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-...|-.++|+|..|.+| ++-..|.|++||..- +..+..|..|.++|.+++|+|..+
T Consensus 8 kSsRvKglsFHP~rPwIL-tslHsG~IQlWDYRM---------------------~tli~rFdeHdGpVRgv~FH~~qp- 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWIL-TSLHSGVIQLWDYRM---------------------GTLIDRFDEHDGPVRGVDFHPTQP- 64 (1202)
T ss_pred ccccccceecCCCCCEEE-EeecCceeeeehhhh---------------------hhHHhhhhccCCccceeeecCCCC-
Confidence 356788999999996555 668999999999987 788899999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++||+.|-.|++|+..+... ..++.||-..|..+.|++.-+ .++|+|+|.+|+||+..+.+ ++..+.+|+..|
T Consensus 65 lFVSGGDDykIkVWnYk~rrc----lftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~-~iavltGHnHYV 138 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRC----LFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK-CIAVLTGHNHYV 138 (1202)
T ss_pred eEEecCCccEEEEEeccccee----hhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc-eEEEEecCceEE
Confidence 999999999999999987554 467889999999999999998 99999999999999999986 899999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------CceEEEeecCCCCeEEEEEeCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-------------------------DSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-------------------------~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.|.+|+|.. .+++++|-|.+|+|||+...+.. ...-+.+.+|...|+-++|+|.
T Consensus 139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 999999988 89999999999999998643221 0122456889999999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
- .+|++|+.|..|++|.++..+. ........|. ..|+++-|||... +|+|.++|+
T Consensus 218 l-pliVSG~DDRqVKlWrmnetKa--------------------WEvDtcrgH~--nnVssvlfhp~q~-lIlSnsEDks 273 (1202)
T KOG0292|consen 218 L-PLIVSGADDRQVKLWRMNETKA--------------------WEVDTCRGHY--NNVSSVLFHPHQD-LILSNSEDKS 273 (1202)
T ss_pred c-ceEEecCCcceeeEEEeccccc--------------------eeehhhhccc--CCcceEEecCccc-eeEecCCCcc
Confidence 7 8999999999999999986531 1112334444 5799999999874 899999998
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
|+||++..-
T Consensus 274 irVwDm~kR 282 (1202)
T KOG0292|consen 274 IRVWDMTKR 282 (1202)
T ss_pred EEEEecccc
Confidence 999998654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=215.79 Aligned_cols=319 Identities=20% Similarity=0.361 Sum_probs=242.4
Q ss_pred hhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCC
Q 039302 64 LHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSD 143 (479)
Q Consensus 64 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (479)
++.++-.||-....|..-.. ...++..|+..+. ..|.|.|.++.
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~--------~~~rla~gS~~Ee-~~Nkvqiv~ld--------------------------- 81 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPD--------KKFRLAVGSFIEE-YNNKVQIVQLD--------------------------- 81 (364)
T ss_pred EEEecCCCceeeeccccCCC--------cceeEEEeeeccc-cCCeeEEEEEc---------------------------
Confidence 34567789999999985422 2468999998874 67999999881
Q ss_pred CCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCc
Q 039302 144 SDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQ 219 (479)
Q Consensus 144 ~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 219 (479)
++. ...+....+.|.-+++.+.|.|+. +.+|||.+ -.++||.+............
T Consensus 82 ----~~s-------~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~-------- 140 (364)
T KOG0290|consen 82 ----EDS-------GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSV-------- 140 (364)
T ss_pred ----cCC-------CceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhh--------
Confidence 000 112222337899999999999976 67898854 36999999863222110000
Q ss_pred cccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE
Q 039302 220 VLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 220 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~ 299 (479)
-....-..+..++++.+|+...+++|.+++-|-+..|||+.++.... ....+.+|...|.+|+|...+..+||++
T Consensus 141 ----L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 141 ----LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred ----hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCcceeEEEeccCccceEEEe
Confidence 00011223566999999999988899999999999999998852211 1345778999999999999888899999
Q ss_pred eCCCcEEEEEcCCCCceeeEEecC--CCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 300 SVDGNIAIWDTRVGKSALMSFKAH--NADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 300 s~dg~I~iwD~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
|.||.+|+||+|........+... ..+...++|++...+++|+-..|+ .|.|.|+|.... ++..+++|.+.|+.
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---pva~L~~H~a~VNg 292 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PVARLRNHQASVNG 292 (364)
T ss_pred cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---ceehhhcCcccccc
Confidence 999999999999886544444332 467899999999999999877665 799999999876 99999999999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
|+|.|+....|+++|.|.++.|||+...... ....|-+.+.. ...|+.++|++..+..|+.
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~-----------------~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----------------NGEDPILAYTA--GGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEeccccccc-----------------CCCCchhhhhc--cceeeeeeecccCCCEEEE
Confidence 9999999999999999999999999876321 11223444443 3579999999988888988
Q ss_pred EcCCCceEEe
Q 039302 457 TAADGFNILM 466 (479)
Q Consensus 457 ~~~dgi~iw~ 466 (479)
+....+.|.+
T Consensus 354 ~~~kkleiLR 363 (364)
T KOG0290|consen 354 CFGKKLEILR 363 (364)
T ss_pred EecCeeeEEe
Confidence 8888777665
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=242.18 Aligned_cols=215 Identities=16% Similarity=0.289 Sum_probs=172.1
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+.+|.+.|++++|+|.+..+||+|+.||+|+|||+....... ....++..+.+|...|.+++|+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------NISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------ccCcceEEecCCCCcEEEEEeCcC
Confidence 579999999999999544799999999999999997621100 013567889999999999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
+.++|++|+.|+.|+|||+.++.. ...+.+|...|.+++|+|++. +|++++.||+|+|||+++++ .+..+.+|.
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVERGKA----VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGT-IVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCCCeE----EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCc-EEEEEecCC
Confidence 755999999999999999987543 244678999999999999998 99999999999999999986 667778887
Q ss_pred CC-EEEEEEcCCCCcEEEEEe----CCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEe-CCCcEE
Q 039302 325 AD-VNVISWNRLASCLLASGS----DDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSS-ADNQLT 397 (479)
Q Consensus 325 ~~-v~~l~~~p~~~~~l~sgs----~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s-~Dg~I~ 397 (479)
.. +..+.|.+++ ..|++++ .|+.|++||+|+... ++.....+. ..+....|++++ .+|++++ .|+.|+
T Consensus 211 ~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~---p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Ir 285 (493)
T PTZ00421 211 SAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMAS---PYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIR 285 (493)
T ss_pred CCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCC---ceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEE
Confidence 64 4578899987 4555443 479999999998764 555554443 455666788855 7777776 599999
Q ss_pred EEECCCC
Q 039302 398 IWDLSLE 404 (479)
Q Consensus 398 iwdl~~~ 404 (479)
+||+..+
T Consensus 286 iwdl~~~ 292 (493)
T PTZ00421 286 CFELMNE 292 (493)
T ss_pred EEEeeCC
Confidence 9999876
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=230.61 Aligned_cols=231 Identities=22% Similarity=0.388 Sum_probs=199.3
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
....|.|+.+.. ..+++|..|.+|+|||.+. ..++..+.||++.|.|+.|.. .
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~---------------------~~c~~~L~GHtGSVLCLqyd~--r- 248 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNS---------------------LECLKILTGHTGSVLCLQYDE--R- 248 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEecccc---------------------HHHHHhhhcCCCcEEeeeccc--e-
Confidence 346799998864 4688999999999999987 678889999999999999965 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEecCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFKAHNA 325 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~~h~~ 325 (479)
.|++|+.|.+|++||.+++.. ...+.+|...|..+.|+. . ++++||.|.+|.+||+..+.. +...+.+|..
T Consensus 249 viisGSSDsTvrvWDv~tge~----l~tlihHceaVLhlrf~n--g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEP----LNTLIHHCEAVLHLRFSN--G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred EEEecCCCceEEEEeccCCch----hhHHhhhcceeEEEEEeC--C-EEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence 899999999999999999766 356889999999999983 3 899999999999999988742 4455689999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.||.+.|+. .+|++++.|.+|++|++.+.. .+.++.+|...|.|+++. +.++++||.|++|++||+..+.
T Consensus 322 aVNvVdfd~---kyIVsASgDRTikvW~~st~e----fvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 322 AVNVVDFDD---KYIVSASGDRTIKVWSTSTCE----FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred heeeecccc---ceEEEecCCceEEEEecccee----eehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccH
Confidence 999999985 699999999999999999988 899999999999999985 4999999999999999999885
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+ +...+||. -|.++.|... -|+||+.|| |+||++...
T Consensus 392 c-------------------------LRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 392 C-------------------------LRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred H-------------------------HHHHhchHHhhhheeecCc---eeeeccccceEEEEecccc
Confidence 3 23334444 4999999763 689999999 999998654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=215.35 Aligned_cols=314 Identities=21% Similarity=0.304 Sum_probs=226.5
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcce
Q 039302 93 TAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCV 172 (479)
Q Consensus 93 ~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V 172 (479)
...|++||+..+ .+|.|.++++. ++ ...++...+..|.|+|
T Consensus 26 ~icFlvgTnslK-~dNqVhll~~d-------------------------------~e-------~s~l~skvf~h~agEv 66 (370)
T KOG1007|consen 26 HICFLVGTNSLK-EDNQVHLLRLD-------------------------------SE-------GSELLSKVFFHHAGEV 66 (370)
T ss_pred ceEEEEeccccC-CcceeEEEEec-------------------------------Cc-------cchhhhhhhhcCCcce
Confidence 467999999987 45999999882 11 1234445677899999
Q ss_pred eEEEEecCCCcEEEEEeCC-------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCC
Q 039302 173 NRIRAMSQNPHICASWADT-------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPV 244 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~d-------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~ 244 (479)
+.++.+|.++.+|+|+..+ -.+-||.+........ ....+.+..+. .+-+.+.|+.|.|+
T Consensus 67 w~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~------------~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 67 WDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN------------SSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred ehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc------------cchhhHhhcCCHHHhCceeeEEEcCC
Confidence 9999999999999998663 2367999987543311 01133444443 34458999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccc--cCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWN--VDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~--~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+. .|++-. |..|.+|++....... +....-.+|....++-+|+|.. .+.+++.+ |+++..||+|+.++....-.
T Consensus 135 s~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 135 SD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhh
Confidence 87 888777 8899999998765421 1111223356678889999933 33566554 89999999998864444457
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|..+.|+|+...+|++|++||.|+|||.|+.+. ++..+.+|..+|++|.|+|....+|++||.|..|.+|..
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 89999999999999989999999999999999999887 999999999999999999988899999999999999988
Q ss_pred CCCCChHHHHHHhhhcc--cccCCCC---CCCCceEEee-cCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 402 SLEKDEEEEAEFKAKTR--EQVNAPE---DLPPQLLFIH-QGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~--~~~~~~~---~~p~~l~~~h-~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
.....+... .+..... ......+ .++..++... .+...|.+++|+.-.|+++||-+.|| +.|
T Consensus 289 ~svSSE~qi-~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 289 SSVSSEQQI-EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccccccccc-ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 654321100 0000000 0001111 1222222222 22257999999999999999999999 444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=239.83 Aligned_cols=264 Identities=19% Similarity=0.259 Sum_probs=191.7
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC-CCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP-VAP 246 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~ 246 (479)
|-..|+....++++.++ ++++.+..+..|+.......+.. ..... .......+.+|.+.|++++|+| ++.
T Consensus 19 ~~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~~~-~~~G~-------~~~~~~~l~GH~~~V~~v~fsP~d~~ 89 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVLKH-TDYGK-------LASNPPILLGQEGPIIDVAFNPFDPQ 89 (493)
T ss_pred ceeccccccccCCCCCc-EeECCceEEEEEecCCceEEeec-ccccc-------CCCCCceEeCCCCCEEEEEEcCCCCC
Confidence 44566667777776444 45577788888876553211100 00000 0111234779999999999999 555
Q ss_pred CeEEEEeCCCeEEEEecCCCCcc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+|++|+.||+|++||+.+.... ......+.+|...|.+++|+|.+.++|++|+.|++|+|||++++. .+..+..|
T Consensus 90 -~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h 167 (493)
T PTZ00421 90 -KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCH 167 (493)
T ss_pred -EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCC
Confidence 9999999999999999764321 111245788999999999999876699999999999999999875 67778889
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC-eEEEEEeCCCCCEEEEEe----CCCcEEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP-VTSIEWSPHEGSTLAVSS----ADNQLTI 398 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~-I~~v~~sp~~~~~las~s----~Dg~I~i 398 (479)
...|++++|+|++ .+|++|+.|+.|+|||+|++. .+..+.+|.+. +..+.|.+.+ ..|++++ .|+.|++
T Consensus 168 ~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 168 SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIML 241 (493)
T ss_pred CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEE
Confidence 9999999999998 899999999999999999987 78888888765 4578899966 4555443 4899999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||++.... +......+. ...+....|++++..+++++..|+ |++|++.+.
T Consensus 242 WDlr~~~~---------------------p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 242 WDTRKMAS---------------------PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeCCCCCC---------------------ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 99987632 112222221 234666788998865555554465 999998764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=233.92 Aligned_cols=243 Identities=22% Similarity=0.330 Sum_probs=202.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~ 247 (479)
...|+++.|+++| .+||+|..+|.|.|||... .+.+.++.+ |...|-+++|+. .
T Consensus 217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~---------------------~k~~~~~~~~h~~rvg~laW~~---~ 271 (484)
T KOG0305|consen 217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE---------------------QKKTRTLRGSHASRVGSLAWNS---S 271 (484)
T ss_pred CCceEEEEECCCC-CEEEEeecCCeEEEEehhh---------------------ccccccccCCcCceeEEEeccC---c
Confidence 8899999999999 7999999999999999987 455667777 999999999993 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
.+.+|+.+|.|..+|++...... ..+.+|...|..++|++++. +||+|+.|+.+.|||..... ++..+..|...|
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAV 346 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAV 346 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCcc-ccEEEeccceee
Confidence 89999999999999998865433 24889999999999999999 99999999999999997764 788999999999
Q ss_pred EEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCC
Q 039302 328 NVISWNRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLE 404 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~ 404 (479)
.+++|+|....+||+|+ .|++|++||..++. .+..... ...|.+|.|++....++.+-| .++.|.||++.+.
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~----~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGA----RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCc----Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 99999999989999975 58999999999887 5666553 678999999997644555544 4789999999886
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+.. ..+..|. ..|..++|+|++..++..+++..|++|++.+.
T Consensus 422 ~~~----------------------~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 KLV----------------------AELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cee----------------------eeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 421 2233343 47999999999975555555555999999875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=234.29 Aligned_cols=217 Identities=17% Similarity=0.286 Sum_probs=167.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|....+||||+.||+|+|||+........ ....++..+.+|...|.+++|+
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------~i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------------EIKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------ccccceEEeecCCCcEEEEEEC
Confidence 467899999999999998658999999999999999975211000 0124566788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+...|++|+.|++|+|||+.++... ..+ .|...|.+++|+|+|. +|++++.|+.|+|||+|++. .+..+.+
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i-~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~-~i~tl~g 207 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKRA----FQI-NMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQE-IASSFHI 207 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcEE----EEE-ecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCc-EEEEEec
Confidence 998756789999999999999876432 122 2557899999999998 89999999999999999985 6677888
Q ss_pred CCCCEEEE-----EEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEEEeecCC--CCeEEEEEeCCCCCEEEEEe
Q 039302 323 HNADVNVI-----SWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 323 h~~~v~~l-----~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~~~~~h~--~~I~~v~~sp~~~~~las~s 391 (479)
|.+.+.+. .|++++ .+|++++.++ .|+|||++.... ++..+..+. +.+. ..|.+..+.+|++|+
T Consensus 208 H~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~---pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTS---ALVTMSIDNASAPLI-PHYDESTGLIYLIGK 282 (568)
T ss_pred ccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCC---ceEEEEecCCccceE-EeeeCCCCCEEEEEE
Confidence 98765443 345777 6777776664 799999997554 566554332 3332 345565668999999
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
.|+.|++|++..+
T Consensus 283 GD~tIr~~e~~~~ 295 (568)
T PTZ00420 283 GDGNCRYYQHSLG 295 (568)
T ss_pred CCCeEEEEEccCC
Confidence 9999999999765
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=220.68 Aligned_cols=254 Identities=20% Similarity=0.334 Sum_probs=211.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...+.|...|.+|...+ ..|.||+.||.++|||... +...++.||.+++.+++|.
T Consensus 99 l~~~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~G----------------------k~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLKG----------------------KSIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred cccccchhhhhhhcccC---ceEEEeecCCeeEEEecCC----------------------ceEEEEecCCcceeeeEEE
Confidence 45677999999998883 5778999999999999874 7788899999999999997
Q ss_pred CCCC--CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-------
Q 039302 243 PVAP--GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG------- 313 (479)
Q Consensus 243 ~~~~--~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~------- 313 (479)
-.+. ..|++++.|.++++|..+.+.........-.||..+|.++...+++. .|++||.|.+|.||+..+.
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~ 232 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELES 232 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccc
Confidence 6554 25999999999999999876543322333459999999999999998 9999999999999993210
Q ss_pred -----------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 314 -----------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 314 -----------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
+.++..+.+|..+|.++.|++. ..+.+++.|.+|+.||+.++. .+.++.+ ..++++
T Consensus 233 ~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~----~~~~~~~-~ksl~~ 305 (423)
T KOG0313|consen 233 SSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGG----LKSTLTT-NKSLNC 305 (423)
T ss_pred cchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccc----ceeeeec-CcceeE
Confidence 1367788999999999999993 689999999999999999988 5666654 678999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+..+|.. .+||+||.|..|++||.+++.. ..+.+.+..|. ..|.++.|+|...++|+|
T Consensus 306 i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-------------------s~v~~s~~gH~--nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 306 ISYSPLS-KLLASGSSDRHIRLWDPRTGDG-------------------SVVSQSLIGHK--NWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred eeccccc-ceeeecCCCCceeecCCCCCCC-------------------ceeEEeeecch--hhhhheecCCCCceEEEE
Confidence 9999955 9999999999999999998743 33344455554 479999999999999999
Q ss_pred EcCCC-ceEEeeeccC
Q 039302 457 TAADG-FNILMPSNIQ 471 (479)
Q Consensus 457 ~~~dg-i~iw~~~~~~ 471 (479)
++.|+ +++|++++-.
T Consensus 364 ~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTK 379 (423)
T ss_pred EecCCeEEEEEeccCC
Confidence 99999 9999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=235.89 Aligned_cols=231 Identities=17% Similarity=0.290 Sum_probs=176.3
Q ss_pred EEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCC
Q 039302 187 SWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASD 266 (479)
Q Consensus 187 t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~ 266 (479)
+|+.+|.|++|+... ..++..+.+|.+.|.+++|+|....+|+||+.||+|+|||+.+.
T Consensus 49 gGG~~gvI~L~~~~r---------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 49 GGGLIGAIRLENQMR---------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred CCCceeEEEeeecCC---------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 356778899999876 45678899999999999999984449999999999999999764
Q ss_pred Cccc----cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE
Q 039302 267 ATWN----VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 267 ~~~~----~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 342 (479)
.... .....+.+|...|.+++|+|++..+|++++.|++|+|||++++. .+..+. |...|.+++|+|++ .+|++
T Consensus 108 ~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG-~lLat 184 (568)
T PTZ00420 108 DESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKG-NLLSG 184 (568)
T ss_pred CccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCC-CEEEE
Confidence 3211 01224678999999999999998678899999999999999885 444454 56789999999999 89999
Q ss_pred EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE-----EeCCCCCEEEEEeCCC----cEEEEECCCCCChHHHHHH
Q 039302 343 GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE-----WSPHEGSTLAVSSADN----QLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 343 gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~-----~sp~~~~~las~s~Dg----~I~iwdl~~~~~~~~~~~~ 413 (479)
++.|+.|+|||+|++. .+..+.+|.+.+.+.. |++++ .+|+++|.|+ +|+|||++....
T Consensus 185 ~s~D~~IrIwD~Rsg~----~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~------- 252 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQE----IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTS------- 252 (568)
T ss_pred EecCCEEEEEECCCCc----EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCC-------
Confidence 9999999999999987 7888999988765433 34654 7788877664 799999986531
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
|...+ .+..+..+.-..|.+....++++|+.|+ |++|.+.
T Consensus 253 --------------pl~~~-~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 253 --------------ALVTM-SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred --------------ceEEE-EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 22222 3332233333445555446777787777 9999874
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=225.56 Aligned_cols=255 Identities=18% Similarity=0.322 Sum_probs=207.6
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+|++ ..+.+|...|.|++=+|.....+|+|+.||.|+|||+.. ..++.+|..|.+.|.
T Consensus 56 kPFv-~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq---------------------R~~~~~f~AH~G~V~ 113 (433)
T KOG0268|consen 56 KPFV-GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ---------------------RECIRTFKAHEGLVR 113 (433)
T ss_pred ccch-hhccccccccchhhcCcchhhhhhccccCceEEEEehhh---------------------hhhhheeecccCcee
Confidence 6666 567999999999999998878899999999999999997 688899999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc------------------------------ccc----CCCCcccCCCcE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT------------------------------WNV----DPNPFIGHAASV 283 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~------------------------------~~~----~~~~~~~h~~~V 283 (479)
+|++.. . .+++++.|.+|+.|.+..... |.. +...+.--...|
T Consensus 114 Gi~v~~--~-~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 114 GICVTQ--T-SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred eEEecc--c-ceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCce
Confidence 999987 3 788999999999998432100 000 111222234568
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 284 EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
.++.|+|...++|++|..|+.|.|||+|+.. ++..+.. ...-|.|+|+|.. ..|++|+.|..++.||+|.... +
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~---p 264 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR---P 264 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccc-cceeeccccccceehhhhhhcc---c
Confidence 8999999999999999999999999999986 5554432 3346899999955 8999999999999999999987 9
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCee
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLK 442 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~ 442 (479)
+..+.+|...|.+|.|+|.+ .-|++||.|.+|+||..+.+..-+. -|.- -..|.
T Consensus 265 ~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdi------------------------YhtkRMq~V~ 319 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDI------------------------YHTKRMQHVF 319 (433)
T ss_pred chhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhh------------------------hhHhhhheee
Confidence 99999999999999999976 9999999999999999987642211 1111 12599
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++.|+-+.. +++||++|+ |++|+-.-
T Consensus 320 ~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 320 CVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEEEecccc-EEEecCCCcceeeeecch
Confidence 999999885 889999998 99998643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=205.15 Aligned_cols=217 Identities=24% Similarity=0.428 Sum_probs=180.7
Q ss_pred CCcEEecCCCCceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
..+.++.+|.+.++.++|+|- |. .||||+.|..|++|+...+..+......-.+|+..|++++|+|.|+ +||++|.|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD 82 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFD 82 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeecc
Confidence 346778899999999999998 55 8999999999999999764444433333458999999999999999 99999999
Q ss_pred CcEEEEEcCCCC-ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 303 GNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 303 g~I~iwD~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
.++.||.-..+. .++..+.+|...|.+++|+++| ++||+++.|..|-||.+..... ..++..+..|+..|-.+.|+|
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE-fec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE-FECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc-EEEEeeeccccccccEEEEcC
Confidence 999999876553 3788889999999999999999 9999999999999999984432 457889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~d 460 (479)
.. .+|+++|.|++|++|.-....+ -++.....+|. .|.+++|+|.|. -|+++++|
T Consensus 161 t~-dlL~S~SYDnTIk~~~~~~ddd----------------------W~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD 216 (312)
T KOG0645|consen 161 TE-DLLFSCSYDNTIKVYRDEDDDD----------------------WECVQTLDGHENTVWSLAFDNIGS-RLVSCSDD 216 (312)
T ss_pred Cc-ceeEEeccCCeEEEEeecCCCC----------------------eeEEEEecCccceEEEEEecCCCc-eEEEecCC
Confidence 65 8999999999999998764221 12333334443 699999999984 78889998
Q ss_pred C-ceEEeee
Q 039302 461 G-FNILMPS 468 (479)
Q Consensus 461 g-i~iw~~~ 468 (479)
+ ++||+..
T Consensus 217 ~tv~Iw~~~ 225 (312)
T KOG0645|consen 217 GTVSIWRLY 225 (312)
T ss_pred cceEeeeec
Confidence 8 9999954
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=212.03 Aligned_cols=274 Identities=19% Similarity=0.340 Sum_probs=215.6
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccc------------c-------ccCCCCCcc
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESE------------T-------VAGHGAPQV 220 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~------------~-------~~~~~~~~~ 220 (479)
....+..+|.|.||+|+|++.+ .+++|++.|++.+||...-+...+.... . ......+..
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred cceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 3446889999999999999998 8999999999999998432211111000 0 000011111
Q ss_pred ccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe
Q 039302 221 LNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 221 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 300 (479)
.-..|+..|.+|...|.+.+|...+. ++++++.|.+..+||+.++.. ...+.||....+.++-+|+.+ ++++.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtge~----v~~LtGHd~ELtHcstHptQr-LVvTsS 333 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETGEV----VNILTGHDSELTHCSTHPTQR-LVVTSS 333 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccCce----eccccCcchhccccccCCcce-EEEEec
Confidence 23467889999999999999999998 999999999999999998755 467899999999999999998 999999
Q ss_pred CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 301 VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 301 ~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
.|.+.++||+|..-..+..|.+|...|+++.|+.+. .+++|++|.+|+|||+|+... ++.+++. ..+++.++.+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRs---plATIRt-dS~~NRvavs 407 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRS---PLATIRT-DSPANRVAVS 407 (481)
T ss_pred cCceeEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccC---cceeeec-CCccceeEee
Confidence 999999999997655778899999999999999865 789999999999999999987 8888885 6789999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCc-EEEEEc
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPG-MIVSTA 458 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~-ll~s~~ 458 (479)
- +..+||.--.+..|++||++...-. .+|... .+||. -|++++|....+. =|.+|+
T Consensus 408 ~-g~~iIAiPhDNRqvRlfDlnG~Rla------------------RlPrts---RqgHrRMV~c~AW~eehp~cnLftcG 465 (481)
T KOG0300|consen 408 K-GHPIIAIPHDNRQVRLFDLNGNRLA------------------RLPRTS---RQGHRRMVTCCAWLEEHPACNLFTCG 465 (481)
T ss_pred c-CCceEEeccCCceEEEEecCCCccc------------------cCCccc---ccccceeeeeeeccccCccccccccc
Confidence 7 5578888888889999999876321 233222 34444 5999999876542 266777
Q ss_pred CCC-ceEEeee
Q 039302 459 ADG-FNILMPS 468 (479)
Q Consensus 459 ~dg-i~iw~~~ 468 (479)
.|. +.-|++.
T Consensus 466 FDR~v~gW~in 476 (481)
T KOG0300|consen 466 FDRMVAGWKIN 476 (481)
T ss_pred ccceeeeeEec
Confidence 776 6667653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=222.95 Aligned_cols=254 Identities=22% Similarity=0.303 Sum_probs=197.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...++.+..+.|.+|+|++ .++++|+.||-|.+|++.+..-.. -...+..-.|.-+..+|.|+.|+
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrK-------------DLkYQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRK-------------DLKYQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhh-------------hhhhhhhcceeecccceEEEeec
Confidence 4567888999999999999 799999999999999997731110 01123334455678899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
.+.. .||+|+.||.|++|.+.++... +.|. .|+..|+|+.|+.++. .+++++.|.+++|.-+.+++ ++..+.
T Consensus 273 RDsE-MlAsGsqDGkIKvWri~tG~Cl----RrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK-~LKEfr 345 (508)
T KOG0275|consen 273 RDSE-MLASGSQDGKIKVWRIETGQCL----RRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGK-CLKEFR 345 (508)
T ss_pred ccHH-HhhccCcCCcEEEEEEecchHH----HHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccch-hHHHhc
Confidence 9998 9999999999999999997663 3454 8999999999999998 89999999999999999996 888999
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCC---------------
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEG--------------- 384 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~--------------- 384 (479)
+|.+.|+...|.++| +.+++++.||+|++|+..+.. ++.+|+. ...+|+++..-|.++
T Consensus 346 GHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred CccccccceEEcCCC-CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 999999999999999 999999999999999998876 4444432 223444444444444
Q ss_pred -----------------------------CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 385 -----------------------------STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 385 -----------------------------~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
.++.+.++|+.++.+.+.+++- ...+.+|
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L----------------------E~tl~Vh 478 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL----------------------ERTLPVH 478 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce----------------------eeeeecc
Confidence 4444445555555555444421 1344555
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
. ..|..++-||.. .++++-++|| +++|++
T Consensus 479 E--kdvIGl~HHPHq-NllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 479 E--KDVIGLTHHPHQ-NLLASYSEDGLLKLWKP 508 (508)
T ss_pred c--ccccccccCccc-chhhhhcccchhhhcCC
Confidence 4 679999999987 5999999999 899974
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=217.86 Aligned_cols=275 Identities=20% Similarity=0.264 Sum_probs=213.1
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
|........|...++-++|+|.| .++|+|...|+|+|||..... .-....|+.-.++|..
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~-------------------hiLKnef~v~aG~I~D 108 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKE-------------------HILKNEFQVLAGPIKD 108 (603)
T ss_pred ccceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcc-------------------eeeeeeeeeccccccc
Confidence 33445788999999999999998 799999999999999987621 1223345666789999
Q ss_pred EEeCCCCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 239 IDWNPVAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
|+|+.++. +|++.+.. |.+.+||..+. ...+.+|...|+++.|-|.-+..+++|++|++|.+|.-.--+
T Consensus 109 i~Wd~ds~-RI~avGEGrerfg~~F~~DSG~S------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK 181 (603)
T KOG0318|consen 109 ISWDFDSK-RIAAVGEGRERFGHVFLWDSGNS------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK 181 (603)
T ss_pred ceeCCCCc-EEEEEecCccceeEEEEecCCCc------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee
Confidence 99999998 66665432 46778886442 256889999999999999999999999999999999754332
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEEeCCCCCEEEEEe
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~sp~~~~~las~s 391 (479)
-..++..|..-|+++.|+|++ .++|+.+.||.|.+||-.++. .+..+. +|++.|.+++|+|++ ..|+++|
T Consensus 182 -Fk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~S 254 (603)
T KOG0318|consen 182 -FKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS-TQFLTVS 254 (603)
T ss_pred -eeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC-ceEEEec
Confidence 334567899999999999998 899999999999999999988 688887 899999999999965 9999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHh-------hhccc-----------c---cCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFK-------AKTRE-----------Q---VNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~-------~~~~~-----------~---~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.|.+++|||+.......+...-. +-..+ . .......++.++..|. +.|+++..+|++
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~ 332 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDG 332 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCC
Confidence 99999999998764321100000 00000 0 0000112445555554 689999999999
Q ss_pred CcEEEEEcCCC-ceEEeeecc
Q 039302 451 PGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 451 ~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..|.|++.|| |+-|+....
T Consensus 333 -~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 333 -KTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred -CEEEeeccCceEEEEecCCc
Confidence 5899999999 888988665
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=225.46 Aligned_cols=207 Identities=20% Similarity=0.353 Sum_probs=177.7
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|..+|..++|+.++ .-+.|+|.|+.|++||+++ ++++..|.. ...++|+.
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtET---------------------G~~~~~f~~-~~~~~cvk 306 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTET---------------------GQVLSRFHL-DKVPTCVK 306 (503)
T ss_pred eehhhhcchhhhhhhhccccC-Ceeeeeecceeeeeecccc---------------------ceEEEEEec-CCCceeee
Confidence 445788999999999999999 4556889999999999998 777777743 34789999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----- 315 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----- 315 (479)
|+|++.+.+++|+.|+.|+.||++++.. .+.+..|-++|++|.|-+.++ .|++.++|++++||+.+.+-.
T Consensus 307 f~pd~~n~fl~G~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~ 381 (503)
T KOG0282|consen 307 FHPDNQNIFLVGGSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIA 381 (503)
T ss_pred cCCCCCcEEEEecCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhc
Confidence 9999977999999999999999998754 366888999999999999999 999999999999999876410
Q ss_pred -------e---------------------------------eeEEecCC--CCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 316 -------A---------------------------------LMSFKAHN--ADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 316 -------~---------------------------------~~~~~~h~--~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
+ ...+.+|. +.-..+.|+|++ .+|++|+.||.+.+||
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWD 460 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEee
Confidence 0 00112222 234568899999 9999999999999999
Q ss_pred CCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 354 LRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 354 lr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.++.+ .+..+++|..+++.+.|+|...+.+|+|+.||.|++|+
T Consensus 461 wkt~k----l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTK----LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhh----hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99988 79999999999999999999999999999999999996
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=250.19 Aligned_cols=260 Identities=21% Similarity=0.351 Sum_probs=214.0
Q ss_pred CCcceeEEEEecCCCc---EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 168 HQGCVNRIRAMSQNPH---ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~---~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
-....++++|.+.+.. +||.|.+||.|.+||........ ....+.++..|.+.|.+|+|++.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~---------------~~~~la~~~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA---------------SEEVLATKSKHTGPVLGLDFNPF 127 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------------chHHHhhhcccCCceeeeecccc
Confidence 3467899999998865 79999999999999987731111 24566778899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..+.||+|+.+|.|.|||++........ ....-.+.|.+++|+..-.++|++++.+|.+.|||+|..+ ++..+..+.
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~~~--~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~ 204 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPFTP--GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTP 204 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCCCC--CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCC
Confidence 9889999999999999999875432211 1222457899999999888899999999999999999885 666665444
Q ss_pred --CCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 325 --ADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 325 --~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
..+..+.|+|+....|+++++|. .|.+||+|.... +++.+.+|...|.++.|++.+..+|++++.|++|.+|
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICW 281 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchhhhcccCCCCeeEe
Confidence 35789999999988888888765 699999999887 8999999999999999999998999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccCC
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQS 472 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~~ 472 (479)
+..++. .+-..-.+...+..+.|+|..|.+++..+-+| |.||.+.....
T Consensus 282 N~~tgE------------------------vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 282 NPNTGE------------------------VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred cCCCce------------------------EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 999873 12222223357999999999999999999999 99999887743
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=223.19 Aligned_cols=244 Identities=22% Similarity=0.317 Sum_probs=203.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|..++|+|..|+=+|+.+. -.|.||+... .....++.....-+++++|..+|. +
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~---------------------~~~~k~~srFk~~v~s~~fR~DG~-L 82 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT---------------------RSVRKTFSRFKDVVYSVDFRSDGR-L 82 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecch---------------------hhhhhhHHhhccceeEEEeecCCe-E
Confidence 4689999999998876666443 5799999887 455566666778999999999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
||.|+..|.|+|||+.+. ...+.+.+|+.+|..+.|+|.+...|++|++|+.+++||+.+.. ....+.+|...|.
T Consensus 83 laaGD~sG~V~vfD~k~r----~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR 157 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSR----VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVR 157 (487)
T ss_pred EEccCCcCcEEEeccccH----HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeE
Confidence 999999999999996552 12466889999999999999999899999999999999999875 4557899999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChH
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEE 408 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~ 408 (479)
|.+|+|..+.+++|||.||.|++||+|.... .+.++. |..||-+|.+-|. +.+||+++ .+.|+|||+..+...
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~eln-hg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~ql- 230 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELN-HGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQL- 230 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEec-CCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCcee-
Confidence 9999999888999999999999999999853 677776 8999999999994 48888876 568999999977521
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...++. +++.|+|+.+..++ .-|+|++-|+ +++|++.+.
T Consensus 231 --------------------l~~~~~--H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 231 --------------------LTSMFN--HNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred --------------------hhhhhc--ccceEEEEEeecCC-ceEeecccccceEEEEccce
Confidence 122232 35789999999987 4778888888 999996553
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=221.80 Aligned_cols=242 Identities=19% Similarity=0.293 Sum_probs=202.6
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
......|.++.|..+| .++|.|...|.|+|||+.+ ...+..+.+|+.++..+.|+|.+
T Consensus 65 srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~---------------------r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS---------------------RVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred HhhccceeEEEeecCC-eEEEccCCcCcEEEecccc---------------------HHHHHHHhhccCceeEEEecccC
Confidence 3456789999999999 8999999999999999665 45567889999999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
...|++|+.|+.+++||+.+... ...+.+|+..|.|.+|+|...++++|||.||+|++||+|.....+.. ..|..
T Consensus 123 ~t~l~s~sDd~v~k~~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~ 197 (487)
T KOG0310|consen 123 NTMLVSGSDDKVVKYWDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGC 197 (487)
T ss_pred CeEEEecCCCceEEEEEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCC
Confidence 87899999999999999987542 35688999999999999999989999999999999999998534444 45899
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|.++.+-|.| .+||+++. ..|+|||+-++.. .+..+..|...|||+.+..++ ..|++||-|+.|++||+...
T Consensus 198 pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~- 270 (487)
T KOG0310|consen 198 PVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNY- 270 (487)
T ss_pred ceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCce---ehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccce-
Confidence 99999999998 78888775 5899999997764 566666699999999999854 99999999999999997765
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
++++.-.-..+|.+++.+|++. .++.|..+|+-..+
T Consensus 271 ------------------------Kvv~s~~~~~pvLsiavs~dd~-t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 271 ------------------------KVVHSWKYPGPVLSIAVSPDDQ-TVVIGMSNGLVSIR 306 (487)
T ss_pred ------------------------EEEEeeecccceeeEEecCCCc-eEEEecccceeeee
Confidence 3444444445899999999875 66666667644444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=232.47 Aligned_cols=304 Identities=23% Similarity=0.286 Sum_probs=234.6
Q ss_pred eeChhHHHhhhcccccCceeeE---EEeeC-CCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCC
Q 039302 55 QCDPTAYNSLHAFHIGWPCLSF---DILRD-TLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKP 130 (479)
Q Consensus 55 ~~d~~~Y~~~~~~~~~wP~ls~---~~~~d-~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~ 130 (479)
.+-+++|...+.....|-.+.+ ..+.. .....-..+.+..++++| ..+..|++|+.-+
T Consensus 176 ~~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-----s~~~tl~~~~~~~------------- 237 (537)
T KOG0274|consen 176 RPWKSFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSG-----SDDSTLHLWDLNN------------- 237 (537)
T ss_pred chhhhhhhhhhhccccccccccccceeecccCcchhhhheeecCeEEec-----CCCceeEEeeccc-------------
Confidence 4456788888887776643322 22211 111111223344566665 4677888886621
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccc
Q 039302 131 ATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESE 210 (479)
Q Consensus 131 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~ 210 (479)
.-.+...+.+|.+.|.++.+.. +..++++|+.|.+++|||+.+
T Consensus 238 ---------------------------~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s--------- 280 (537)
T KOG0274|consen 238 ---------------------------GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST--------- 280 (537)
T ss_pred ---------------------------ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC---------
Confidence 2233344999999999999987 447999999999999999887
Q ss_pred cccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC
Q 039302 211 TVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP 290 (479)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 290 (479)
+.+..++.+|...|.++...+ ..+++|+.|.+|++|++.++... ..+.+|.++|+++..+
T Consensus 281 ------------g~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l----~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 281 ------------GECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACL----NLLRGHTGPVNCVQLD- 340 (537)
T ss_pred ------------CcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceE----EEeccccccEEEEEec-
Confidence 899999999999999998876 37889999999999999876552 4466699999999998
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-CCCCceEEEeec
Q 039302 291 TESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL-KGGDSVVAHFEY 369 (479)
Q Consensus 291 ~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~-~~~~~~~~~~~~ 369 (479)
+. ++++|+.||+|++||+++.+ ++.++.+|...|.++.+... ..+++|+.|++|++||+++. + ++.++.+
T Consensus 341 -~~-~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~----c~~tl~~ 411 (537)
T KOG0274|consen 341 -EP-LLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRK----CIHTLQG 411 (537)
T ss_pred -CC-EEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhh----hhhhhcC
Confidence 55 99999999999999999885 89999999999999988875 68999999999999999999 6 8999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCC
Q 039302 370 HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449 (479)
Q Consensus 370 h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~ 449 (479)
|..-+.++.+.. .+|++++.|++|++||....... +.+..+ .+..|..+++.
T Consensus 412 h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~----------------------~~~~~~-~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 412 HTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECL----------------------RTLEGR-HVGGVSALALG-- 463 (537)
T ss_pred Cccccccccccc---ceeEeccccccEEEeecccCcee----------------------eeeccC-CcccEEEeecC--
Confidence 999998888753 88999999999999999887531 222221 22568888876
Q ss_pred CCcEEEEEcCCCceEEeeecc
Q 039302 450 VPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 450 ~~~ll~s~~~dgi~iw~~~~~ 470 (479)
.+.+|+++.++.+++|++.+.
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cceEEEEecCCeeEEEecccC
Confidence 233455555444999999877
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=217.69 Aligned_cols=290 Identities=18% Similarity=0.244 Sum_probs=220.7
Q ss_pred eeeeChhHHH--hhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCC
Q 039302 53 ELQCDPTAYN--SLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKP 130 (479)
Q Consensus 53 ~l~~d~~~Y~--~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~ 130 (479)
.-+|++..=+ ..|-+-+.-+.|++.|+--....... -.|+.+||. +-.|.||++--......-
T Consensus 154 vYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~----gNyvAiGtm-----dp~IeIWDLDI~d~v~P~------ 218 (463)
T KOG0270|consen 154 VYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGA----GNYVAIGTM-----DPEIEIWDLDIVDAVLPC------ 218 (463)
T ss_pred EEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCC----cceEEEecc-----CceeEEeccccccccccc------
Confidence 3444443323 34555667777899999763332221 358999984 448999988321110000
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCC-------CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc
Q 039302 131 ATGDEDADGESSDSDDDSDDEEEGGSG-------TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL 203 (479)
Q Consensus 131 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~ 203 (479)
-..|.+ +........+|+..|-.+.|+..-.++||+||.|.+|.+||+..
T Consensus 219 ---------------------~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-- 275 (463)
T KOG0270|consen 219 ---------------------VTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-- 275 (463)
T ss_pred ---------------------eeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--
Confidence 000000 00111224579999999999999999999999999999999998
Q ss_pred ccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE
Q 039302 204 NALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV 283 (479)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V 283 (479)
++|..++..|+++|.+++|+|..+..|++|+.|++|.+.|.+..... ...-.-.+.|
T Consensus 276 -------------------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s----~~~wk~~g~V 332 (463)
T KOG0270|consen 276 -------------------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS----GKEWKFDGEV 332 (463)
T ss_pred -------------------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc----CceEEeccce
Confidence 88999999999999999999999889999999999999999853221 1122236789
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 284 EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
..++|.|...+.|+++..||+|+-+|+|....++.++.+|...|.+|++++..+.+++|++.|+.|++|++.........
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 99999999998999999999999999999978999999999999999999999999999999999999999766531111
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+.+. -+...|.++.|+...+||.||..+.++|||+.+..
T Consensus 413 ~~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 413 EHSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccc--ccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 22222 23467888999888899999999999999998764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=222.88 Aligned_cols=329 Identities=17% Similarity=0.218 Sum_probs=240.6
Q ss_pred hHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCC
Q 039302 59 TAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDAD 138 (479)
Q Consensus 59 ~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (479)
..|.-+-.+.+..---+|+|.|+.... ..++. -.+|.|..|.+++ ..... +
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~--------~~lv~------l~nNtv~~ysl~~-s~~~~-p------------- 359 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTE--------NTLVL------LANNTVEWYSLEN-SGKTS-P------------- 359 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcc--------eeEEE------eecCceEEEEecc-CCCCC-c-------------
Confidence 345555556666666799999985432 12333 1468899999965 11110 0
Q ss_pred CCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccc--ccccccccC--
Q 039302 139 GESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNA--LAESETVAG-- 214 (479)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--~~~~~~~~~-- 214 (479)
.....-.+.+.+|...|.+++++.+. .++++ +..+.++||+..+...- +...-....
T Consensus 360 -----------------~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~S-ga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 360 -----------------EADRTSNIEIGGHRSDVRSLCVSSDS-ILLAS-GAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred -----------------cccccceeeeccchhheeEEEeecCc-eeeee-cCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 00223335678999999999999987 67777 45578999998853211 000000000
Q ss_pred -CCCCc--------------cccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--------ccc
Q 039302 215 -HGAPQ--------------VLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--------WNV 271 (479)
Q Consensus 215 -~~~~~--------------~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--------~~~ 271 (479)
.+... ......+.+...|.+.++.++.+|++. .+++|+.|.+|++|+..-... ..+
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 00000 012234455678999999999999998 899999999999999742111 011
Q ss_pred CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEE
Q 039302 272 DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 351 (479)
Q Consensus 272 ~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~i 351 (479)
.......-...|.|+.+||+++ ++|++--|.+++||-+.+.+ -..++.+|.-+|.||..+|++ .+++|||.|..|+|
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DS-klivTgSADKnVKi 576 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKI 576 (888)
T ss_pred ccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCc-CeEEeccCCCceEE
Confidence 1112223457899999999999 99999999999999999986 677889999999999999999 99999999999999
Q ss_pred EeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce
Q 039302 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL 431 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 431 (479)
|-+.-+. +-..|-+|...|.+|.|.|.. .+|.++|.|+.|+-||-...... +.
T Consensus 577 WGLdFGD----CHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~i----------------------q~ 629 (888)
T KOG0306|consen 577 WGLDFGD----CHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEI----------------------QK 629 (888)
T ss_pred eccccch----hhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhh----------------------ee
Confidence 9999988 788999999999999999955 99999999999999998766421 33
Q ss_pred EEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 432 LFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 432 ~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+..| +..|++++..|+|. +++|++.|. |++|....
T Consensus 630 L~~H--~~ev~cLav~~~G~-~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 630 LDGH--HSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eccc--hheeeeeEEcCCCC-eEEeccCCceeEeeeccC
Confidence 4444 46899999999996 777777766 99997655
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=191.64 Aligned_cols=254 Identities=21% Similarity=0.290 Sum_probs=197.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.+...|++.|.|.+|+|.| .+||||+.|.+|++.-++...... ..+-..|.-|.+.|..|+|.
T Consensus 83 kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~----------------~g~dle~nmhdgtirdl~fl 145 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNA----------------TGHDLEFNMHDGTIRDLAFL 145 (350)
T ss_pred eeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccc----------------cCcceeeeecCCceeeeEEe
Confidence 3456789999999999999 899999999999998887643322 33456678899999999997
Q ss_pred CCCC--C-eEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 243 PVAP--G-RLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 243 ~~~~--~-~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.+.. + +|++++ .|..|++-|..+++. ...+.+|++-|.++- +-++. .|++|+.|.+|++||+|-.. ++.
T Consensus 146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~----~~a~sghtghilaly-swn~~-m~~sgsqdktirfwdlrv~~-~v~ 218 (350)
T KOG0641|consen 146 DDPESGGAILASAGAGDCKIYITDCGRGQG----FHALSGHTGHILALY-SWNGA-MFASGSQDKTIRFWDLRVNS-CVN 218 (350)
T ss_pred cCCCcCceEEEecCCCcceEEEeecCCCCc----ceeecCCcccEEEEE-EecCc-EEEccCCCceEEEEeeeccc-eee
Confidence 5432 2 666654 466788878776554 356889999988763 33466 99999999999999999874 555
Q ss_pred EEe--cC-----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 319 SFK--AH-----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~~--~h-----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.+. .| .+.|.+++..|.+ .+|++|-.|....+||+|.+. ++..|..|+..|.+|.|+| +..+|++++
T Consensus 219 ~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp-~a~yllt~s 292 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSP-GAHYLLTCS 292 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCC-CceEEEEec
Confidence 542 22 2568999999999 999999999999999999988 8999999999999999999 669999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.|..|++-|+...-. ..+|.-++-.|. ..+..+.|||+.- -++|++.|. ..+|-+
T Consensus 293 yd~~ikltdlqgdla------------------~el~~~vv~ehk--dk~i~~rwh~~d~-sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 293 YDMKIKLTDLQGDLA------------------HELPIMVVAEHK--DKAIQCRWHPQDF-SFISSSADKTATLWAL 348 (350)
T ss_pred ccceEEEeecccchh------------------hcCceEEEEecc--CceEEEEecCccc-eeeeccCcceEEEecc
Confidence 999999999875421 133333333343 5688899999984 455555555 888865
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=217.56 Aligned_cols=266 Identities=18% Similarity=0.291 Sum_probs=206.7
Q ss_pred eEEEEecCC------CcEEEEEeCCceEEEEeCCCCcccccccccccCCCC-CccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 173 NRIRAMSQN------PHICASWADTGHVQVWDFRSHLNALAESETVAGHGA-PQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 173 ~~v~~~p~~------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.|+.|...+ .+++|.|+.+..|.|||+.-......... ...... .+...++.-....+|+..|.+|+|+..-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~-LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVT-LGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccccccee-echhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 455554431 47999999999999999875322211110 000000 0001122223345799999999999998
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.+.||||+.|.+|++||+.+++. ...+..|.+.|.+++|+|....++++||.|++|.+.|.|.....-..+. ..+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g 330 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDG 330 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ecc
Confidence 88999999999999999998765 3456679999999999999999999999999999999997542222232 457
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|-.+.|+|.....++++.+||+|+-+|+|+... ++.++.+|.++|.+|++++..+++|+++|.|+.|++|++....
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 8999999999999999999999999999999865 9999999999999999999999999999999999999998653
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
. .....|.-. ....++++.|..+.+++.+|..+ ++||++.+.
T Consensus 408 ~-----------------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 408 P-----------------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred C-----------------------cccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 1 223333211 13678899999999999999988 899988664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=217.87 Aligned_cols=282 Identities=21% Similarity=0.294 Sum_probs=216.1
Q ss_pred ccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039302 69 IGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148 (479)
Q Consensus 69 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (479)
.+|-+-.+.|+++.. .|. .++.+..|.+|++. ..
T Consensus 174 h~gev~~v~~l~~sd-----------tla-----tgg~Dr~Ik~W~v~-~~----------------------------- 207 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSD-----------TLA-----TGGSDRIIKLWNVL-GE----------------------------- 207 (459)
T ss_pred cccccceeEEccCcc-----------hhh-----hcchhhhhhhhhcc-cc-----------------------------
Confidence 478888888888721 233 34678889999883 11
Q ss_pred ccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE
Q 039302 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK 228 (479)
Q Consensus 149 ~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479)
+-.+...+.+-.+.|+++.|.+++.++||. +.|+.+++|++.. .+...+
T Consensus 208 ---------k~~~~~tLaGs~g~it~~d~d~~~~~~iAa-s~d~~~r~Wnvd~---------------------~r~~~T 256 (459)
T KOG0288|consen 208 ---------KSELISTLAGSLGNITSIDFDSDNKHVIAA-SNDKNLRLWNVDS---------------------LRLRHT 256 (459)
T ss_pred ---------hhhhhhhhhccCCCcceeeecCCCceEEee-cCCCceeeeeccc---------------------hhhhhh
Confidence 112334566777899999999999666654 9999999999998 678889
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+.||++.|+++.|..... .+++|+.|.+|++||+....... ..+. .+.+++|..+ .. .+++|-.|++|++|
T Consensus 257 LsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~k---t~l~--~S~cnDI~~~--~~-~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 257 LSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSK---TVLP--GSQCNDIVCS--IS-DVISGHFDKKVRFW 327 (459)
T ss_pred hcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheec---cccc--cccccceEec--ce-eeeecccccceEEE
Confidence 999999999999998876 79999999999999998743321 2232 3567778776 22 79999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC----CCCeEEEEEeCCCC
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH----KHPVTSIEWSPHEG 384 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h----~~~I~~v~~sp~~~ 384 (479)
|+|+.. +......+. .|+++..++++ ..|++++.|.++.+.|+|+.. ....+.+. ....+.+.|||++
T Consensus 328 D~Rs~~-~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e----I~~~~sA~g~k~asDwtrvvfSpd~- 399 (459)
T KOG0288|consen 328 DIRSAD-KTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE----IRQTFSAEGFKCASDWTRVVFSPDG- 399 (459)
T ss_pred eccCCc-eeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc----EEEEeeccccccccccceeEECCCC-
Confidence 999986 667777665 89999999999 788888999999999999987 56666542 2348899999955
Q ss_pred CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceE
Q 039302 385 STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNI 464 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~i 464 (479)
.++|+||.||.|+||++.+++.+ ..+.....+..|++++|+|.|.+++++.-+..+.+
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE----------------------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLE----------------------KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEE----------------------EEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 99999999999999999998632 11111111225999999999976655544443788
Q ss_pred Ee
Q 039302 465 LM 466 (479)
Q Consensus 465 w~ 466 (479)
|.
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 74
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=210.95 Aligned_cols=241 Identities=19% Similarity=0.324 Sum_probs=200.9
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
-.+.++...|.. ..++||+.|..+.++|... .+.+.+|.||...|..+.++++.. .+
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s---------------------~q~l~~~~Gh~kki~~v~~~~~~~-~v 276 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPS---------------------NQILATLKGHTKKITSVKFHKDLD-TV 276 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecch---------------------hhhhhhccCcceEEEEEEeccchh-he
Confidence 468888888873 6788999999999999987 678899999999999999999998 99
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe--cCCCCE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--AHNADV 327 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--~h~~~v 327 (479)
++++.|..|+||....... ......|..+|+.+..+|+|. +|++++.||++.+.|++++.. +.... ...-.+
T Consensus 277 ~~aSad~~i~vws~~~~s~----~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ 350 (506)
T KOG0289|consen 277 ITASADEIIRVWSVPLSSE----PTSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEY 350 (506)
T ss_pred eecCCcceEEeeccccccC----ccccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcE-EEEEeecccccee
Confidence 9999999999999866543 355778999999999999999 999999999999999999863 33332 233568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
++.+|+|+| .+|++|..||.|+|||+.+.. .+..|.+|+++|..|+|+.++ ++|++++.|+.|++|||+..+..
T Consensus 351 ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 351 TSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred EEeeEcCCc-eEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc
Confidence 999999999 999999999999999999988 689999999999999999955 99999999999999999987521
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+.+.... ...|.++.|.+.|.+|+++ +.+ +.||.....
T Consensus 425 ----------------------kt~~l~~-~~~v~s~~fD~SGt~L~~~-g~~-l~Vy~~~k~ 462 (506)
T KOG0289|consen 425 ----------------------KTIQLDE-KKEVNSLSFDQSGTYLGIA-GSD-LQVYICKKK 462 (506)
T ss_pred ----------------------ceeeccc-cccceeEEEcCCCCeEEee-cce-eEEEEEecc
Confidence 1222222 2379999999999755554 333 566666533
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=193.38 Aligned_cols=249 Identities=20% Similarity=0.223 Sum_probs=200.4
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+.....+|-.+|..++.+.++ .-+|+|+.|..|.+||+++ ++.+..|.+|.+.|+
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~T---------------------Gkv~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNT---------------------GKVDRRFRGHLAQVN 105 (307)
T ss_pred ccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEccc---------------------Ceeeeecccccceee
Confidence 345667888999999999999998 5778889999999999998 888999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|+.... .+++|+.|.++++||.+...... .+.+......|.+|..+. +.+++||.||+++.||+|.+. ..
T Consensus 106 tV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~eP--iQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~-l~ 178 (307)
T KOG0316|consen 106 TVRFNEESS-VVASGSFDSSVRLWDCRSRSFEP--IQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT-LS 178 (307)
T ss_pred EEEecCcce-EEEeccccceeEEEEcccCCCCc--cchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecce-ee
Confidence 999999987 99999999999999998755433 355666778899999863 379999999999999999985 32
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE--EEEEeCCCCCEEEEEeCCCc
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT--SIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~--~v~~sp~~~~~las~s~Dg~ 395 (479)
. .-...+|++++|++++ +..++++.|+++++.|-.+++ .+..+++|...=. ..+++..+ ..+++||+||.
T Consensus 179 s--Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk----lL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~ 250 (307)
T KOG0316|consen 179 S--DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK----LLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGK 250 (307)
T ss_pred h--hhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH----HHHHhcccccceeeeeeeecccc-eeEEeccCCce
Confidence 2 3345689999999999 888889999999999999988 8999999987544 34555533 88999999999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
|++|||-.... -..+.+.+.-.|.++.+||..+.++++++ .+...|.-
T Consensus 251 Vy~wdLvd~~~-----------------------~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 251 VYFWDLVDETQ-----------------------ISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred EEEEEecccee-----------------------eeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 99999987631 11222222223899999999875555544 44566653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=199.84 Aligned_cols=276 Identities=20% Similarity=0.339 Sum_probs=209.1
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+|..-|+++.|.+.| +.+|||+.|++|+|||...... +..+....+.|.+.|..+.|.+-.
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~-----------------~W~~Ts~Wrah~~Si~rV~WAhPE 71 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSG-----------------TWSCTSSWRAHDGSIWRVVWAHPE 71 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCC-----------------ceEEeeeEEecCCcEEEEEecCcc
Confidence 4788999999999999 7888999999999999865211 345667788999999999998754
Q ss_pred CC-eEEEEeCCCeEEEEecCCC------CccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCc--
Q 039302 246 PG-RLVSGDCNSCIHLWEPASD------ATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKS-- 315 (479)
Q Consensus 246 ~~-~l~sg~~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~-- 315 (479)
-| .+|+++.|+++.||.-... ..|.. ...+....+.|++|+|.|... -.+|+++.||.||||+.-..-.
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 33 8999999999999975321 12222 234566778999999999753 3689999999999998765421
Q ss_pred ---eee-------EEecCCCCEEEEEEcCCC--CcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 316 ---ALM-------SFKAHNADVNVISWNRLA--SCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 316 ---~~~-------~~~~h~~~v~~l~~~p~~--~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
... ....+.....|++|+|.. ..+||.|+++ +.++||...........+.++..|+.+|++|+
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~ 230 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS 230 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence 111 112466778999999753 4689998887 57899987655433456778889999999999
Q ss_pred EeCCCC---CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEE
Q 039302 379 WSPHEG---STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMI 454 (479)
Q Consensus 379 ~sp~~~---~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll 454 (479)
|.|+-+ .+||+++.|| |+||.+.......++.+ ........+++.+++..+.+|. .|..+.|+-.| .+|
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee-----~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiL 303 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE-----VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TIL 303 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc-----ccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEE
Confidence 999754 4799999999 99999986543222111 1122334467778888788777 79999999998 499
Q ss_pred EEEcCCC-ceEEee
Q 039302 455 VSTAADG-FNILMP 467 (479)
Q Consensus 455 ~s~~~dg-i~iw~~ 467 (479)
+|+|+|| |++|+.
T Consensus 304 sStGdDG~VRLWka 317 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKA 317 (361)
T ss_pred eecCCCceeeehhh
Confidence 9999999 999975
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=197.61 Aligned_cols=239 Identities=15% Similarity=0.262 Sum_probs=205.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|..+++.|+++.+| .||.+|+.|.++.||---. ++.+-++.||++.|+|++..-
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n---------------------GerlGty~GHtGavW~~Did~ 62 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN---------------------GERLGTYDGHTGAVWCCDIDW 62 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecC---------------------CceeeeecCCCceEEEEEecC
Confidence 477999999999999999 7999999999999998755 788899999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCC-----
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-----DGNIAIWDTRVG----- 313 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----dg~I~iwD~~~~----- 313 (479)
+.. .|++|+.|.+++|||+.+++... ...-..+|..+.|++.+. +++.+.. .+.|.++|++..
T Consensus 63 ~s~-~liTGSAD~t~kLWDv~tGk~la-----~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 63 DSK-HLITGSADQTAKLWDVETGKQLA-----TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred Ccc-eeeeccccceeEEEEcCCCcEEE-----EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 988 99999999999999999976632 222357899999999998 6655543 467999999943
Q ss_pred -CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 -KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 -~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
+.|...+..+...++++-|.|.+ .+|++|..||.|.+||++++.. .+...+.|...|+.++++|+. .+|+++|.
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~ 210 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDR-TYFITGSK 210 (327)
T ss_pred ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCc-ceEEeccc
Confidence 23677888888999999999999 8999999999999999999875 777778899999999999965 99999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
|.+-++||+.+. +++....-..+|++.+++|....++..++.+-
T Consensus 211 Dttakl~D~~tl-------------------------~v~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 211 DTTAKLVDVRTL-------------------------EVLKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred Cccceeeeccce-------------------------eeEEEeeecccccceecccccceEEecCCcee
Confidence 999999999887 34444444468999999998887887777764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=193.18 Aligned_cols=273 Identities=19% Similarity=0.261 Sum_probs=218.3
Q ss_pred CceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 039302 71 WPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDD 150 (479)
Q Consensus 71 wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (479)
-++.|+-|--+.. +++.| +.+..+.||.+..+.
T Consensus 21 ~~v~Sv~wn~~g~-----------~lasg-----s~dktv~v~n~e~~r------------------------------- 53 (313)
T KOG1407|consen 21 QKVHSVAWNCDGT-----------KLASG-----SFDKTVSVWNLERDR------------------------------- 53 (313)
T ss_pred hcceEEEEcccCc-----------eeeec-----ccCCceEEEEecchh-------------------------------
Confidence 3567788877743 46665 467789999884321
Q ss_pred ccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec
Q 039302 151 EEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG 230 (479)
Q Consensus 151 ~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479)
........+|.+.|-.++|.|..+.++++++.|.+|++||+.. .++.....
T Consensus 54 --------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~---------------------~k~~~~i~ 104 (313)
T KOG1407|consen 54 --------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS---------------------GKCTARIE 104 (313)
T ss_pred --------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc---------------------CcEEEEee
Confidence 1122356789999999999999999999999999999999997 67777765
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
... +-.-+.|+|++. +++.++.|..|.+.|.++..... -......++.++|+.++. +|+.....|+|.|...
T Consensus 105 ~~~-eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~-----~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 105 TKG-ENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVN-----EEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSY 176 (313)
T ss_pred ccC-cceEEEEcCCCC-EEEEecCcccEEEEEecccceee-----hhcccceeeeeeecCCCC-EEEEecCCceEEEEec
Confidence 444 445688999998 99999999999999998754422 112345688899996665 7777677899999999
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
...+ ++.++++|.....||.|+|+| .+||+|+.|..+.+||+...- +++.+.-+.-||..++|+.+ +.+||+|
T Consensus 177 psLk-pv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi----C~R~isRldwpVRTlSFS~d-g~~lASa 249 (313)
T KOG1407|consen 177 PSLK-PVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI----CERCISRLDWPVRTLSFSHD-GRMLASA 249 (313)
T ss_pred cccc-cccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh----hheeeccccCceEEEEeccC-cceeecc
Confidence 8775 899999999999999999999 999999999999999999887 78999999999999999985 5999999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
|+|..|-|=++.++. ++-.+ ....+-..|+|||..+.|..++++
T Consensus 250 SEDh~IDIA~vetGd------------------------~~~eI-~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGD------------------------RVWEI-PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CccceEEeEecccCC------------------------eEEEe-eccCCceeEEecCCCceeeEEecC
Confidence 999999998888874 22222 223578899999999744444443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=197.84 Aligned_cols=234 Identities=23% Similarity=0.357 Sum_probs=181.1
Q ss_pred CceeE--EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc
Q 039302 158 TPILQ--LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE 235 (479)
Q Consensus 158 ~p~~~--~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (479)
+|.+. +....|.+.|++++.+. .++|+||.|-+|+|||+.. ...+..+-.|.+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k---------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK---------------------RKQLGILLSHAGS 85 (362)
T ss_pred ceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccc---------------------hhhhcceeccccc
Confidence 55332 46778999999999974 7899999999999999998 4566777789999
Q ss_pred eEEEEeCCCCC-CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 236 GYAIDWNPVAP-GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 236 v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
|+++.|.+.-. +.|++|+.||.|.+|+... |. ....+.+|.+.|++|+.+|.++ +-++.+.|+.+++|++-.++
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCC---eE-EeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc
Confidence 99999997652 3799999999999999855 32 2467899999999999999999 88899999999999997765
Q ss_pred ceeeEEecCCCCEEEEEEcCCC--------------------------------------CcEEEEEeCCCeEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLA--------------------------------------SCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~--------------------------------------~~~l~sgs~dg~i~iwDlr~ 356 (479)
.....--.+ ..+.+.|+|.| +..|++|++|+.|.+||...
T Consensus 161 ~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 161 VAFVLNLKN--KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred cceeeccCC--cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence 211100001 11113333322 35789999999999999998
Q ss_pred CCCCCceEEEeecCCCCeEEEEEe-CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 357 LKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 357 ~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
.. +...|.+|...|-++.+- ...+.+|+|+|.||.|+|||++... ..+|.++..+
T Consensus 239 ~~----~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~--------------------k~~~~~l~e~ 294 (362)
T KOG0294|consen 239 DT----PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET--------------------KKRPTLLAEL 294 (362)
T ss_pred Cc----cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc--------------------cCCcceeEEe
Confidence 66 899999999999999842 2245899999999999999999874 3355666666
Q ss_pred cCCCCeeeEEE
Q 039302 436 QGQKDLKELHW 446 (479)
Q Consensus 436 ~g~~~V~~v~w 446 (479)
.-...++|+..
T Consensus 295 n~~~RltCl~~ 305 (362)
T KOG0294|consen 295 NTNVRLTCLRV 305 (362)
T ss_pred ecCCccceeee
Confidence 64445666654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=205.63 Aligned_cols=252 Identities=21% Similarity=0.367 Sum_probs=213.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|+.++..... .++.+++.|.+.+||.+.. +.++.++.||.+.|+++.|+
T Consensus 142 re~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Es---------------------g~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLES---------------------GACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hhhcccccceeeehhhcCC-cceeecccccceeEEeecc---------------------ccceeeecccccceeeEEec
Confidence 4578999999999988766 5999999999999999998 89999999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEec------CCC------------------------------CccccCCCCcccCCCcEEEE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEP------ASD------------------------------ATWNVDPNPFIGHAASVEDL 286 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~------~~~------------------------------~~~~~~~~~~~~h~~~V~~l 286 (479)
+.+. ++++++.|++-+||.. ... ....++...+.+|.+.|.+.
T Consensus 200 ~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 200 NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9998 9999999999999972 110 01233445678899999999
Q ss_pred EECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE
Q 039302 287 QWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366 (479)
Q Consensus 287 ~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~ 366 (479)
.|-..+. .+++++.|.+..+||+.++. ++..+.+|...++.++-+|.. .++++.+.|.+.++||.|..-. .+..
T Consensus 279 dWL~gg~-Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~---sV~V 352 (481)
T KOG0300|consen 279 DWLAGGQ-QMVTASWDRTANLWDVETGE-VVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ---SVAV 352 (481)
T ss_pred hhhcCcc-eeeeeeccccceeeeeccCc-eeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc---eeee
Confidence 9998888 89999999999999999986 888899999999999999988 9999999999999999995543 7889
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEE
Q 039302 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHW 446 (479)
Q Consensus 367 ~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w 446 (479)
|.+|...|+++.|+- + ..+++||.|.+|+||||++... | +..+ .-.++++.++.
T Consensus 353 FQGHtdtVTS~vF~~-d-d~vVSgSDDrTvKvWdLrNMRs---------------------p--lATI-RtdS~~NRvav 406 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNT-D-DRVVSGSDDRTVKVWDLRNMRS---------------------P--LATI-RTDSPANRVAV 406 (481)
T ss_pred ecccccceeEEEEec-C-CceeecCCCceEEEeeeccccC---------------------c--ceee-ecCCccceeEe
Confidence 999999999999997 3 6899999999999999998852 2 1222 22357999999
Q ss_pred eCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 447 HTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 447 ~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+..++ +|+--.++. |++|++...
T Consensus 407 s~g~~-iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 407 SKGHP-IIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ecCCc-eEEeccCCceEEEEecCCC
Confidence 98876 566555555 999988654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=227.85 Aligned_cols=253 Identities=17% Similarity=0.294 Sum_probs=201.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC---CceEEEEeCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK---DEGYAIDWNPVA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~~~ 245 (479)
++..++|...++...+++.|- ..+.||.++..... ..+...+++.. -.+..+.|+...
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~-----------------~~~~~~~k~kqn~~~S~~DVkW~~~~ 99 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFS-----------------EKCNHRFKTKQNKFYSAADVKWGQLY 99 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCC-----------------cceeeecccccceeeehhhcccccch
Confidence 456777888887755555433 46788888763221 12222222211 146678899776
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.++|||++..|.|.+||+....... ....|..|...|+++.|++..+++|++||.||+|++||+|..+ ...++.+...
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk-~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSE 177 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNK-LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSE 177 (839)
T ss_pred hhhheeecCCCcEEEEecCccccch-hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccch
Confidence 6799999999999999997732211 1346889999999999999999999999999999999999986 5667777888
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|..|.|+|..++.|+++.+.|.+++||+|.... +...+.+|.++|.++.|+| ++.+|||||.|++|+|||+....
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchh---HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC
Confidence 8999999999889999999999999999999886 8889999999999999999 55999999999999999998653
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC---ceEEeeec
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG---FNILMPSN 469 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg---i~iw~~~~ 469 (479)
. ..+..++. -.+|..|+|-|..++.|++++.-+ |+||++.-
T Consensus 254 ~----------------------~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 254 A----------------------KPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred c----------------------cceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 1 13445554 258999999999999999988765 99999854
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=220.54 Aligned_cols=213 Identities=23% Similarity=0.311 Sum_probs=186.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe-
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW- 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 241 (479)
.++..|...||.+..+.++ ..|+++|.|-+|++|+..... .-++.++..|.+.|.||+.
T Consensus 67 asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~-------------------~~c~stir~H~DYVkcla~~ 126 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN-------------------TFCMSTIRTHKDYVKCLAYI 126 (735)
T ss_pred hhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc-------------------chhHhhhhcccchheeeeec
Confidence 4678999999999999988 567789999999999998721 2567788999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCc------cccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDAT------WNVDPNPFI-GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~------~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.++.. .+|||+-|+.|.|||++++.. ..+....+. ++..+|++++-++++. .|++|+..+.|++||.|+.+
T Consensus 127 ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 127 AKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred ccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecccccc
Confidence 66665 999999999999999987522 111122233 8899999999999997 99999999999999999986
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
.+..+.+|...|.++..+++| ..++++|.||+|++||++..+ ++.++..|+..|+++..+|.- ..+.+|+.||
T Consensus 205 -kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr----Cl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~ 277 (735)
T KOG0308|consen 205 -KIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR----CLATYIVHKEGVWALQSSPSF-THVYSGGRDG 277 (735)
T ss_pred -ceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc----eeeeEEeccCceEEEeeCCCc-ceEEecCCCC
Confidence 667788999999999999999 999999999999999999988 899999999999999999955 8999999999
Q ss_pred cEEEEECCCC
Q 039302 395 QLTIWDLSLE 404 (479)
Q Consensus 395 ~I~iwdl~~~ 404 (479)
.|..=|+++.
T Consensus 278 ~i~~Tdl~n~ 287 (735)
T KOG0308|consen 278 NIYRTDLRNP 287 (735)
T ss_pred cEEecccCCc
Confidence 9999999886
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=201.37 Aligned_cols=248 Identities=15% Similarity=0.236 Sum_probs=208.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
..-.+.+|++.|+......+. ...|+++.|-+.+|||.-+ +..+..| .|..-|.+++
T Consensus 51 wigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t---------------------gdelhsf-~hkhivk~~a 107 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT---------------------GDELHSF-EHKHIVKAVA 107 (334)
T ss_pred cEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh---------------------hhhhhhh-hhhheeeeEE
Confidence 445788999999999998877 7889999999999999876 5667777 4888999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+.+.. +|++|+.+.-++|||++..... ...+.+|++.|..+-|...+. .|++++.|++||+||.|++. .+.++
T Consensus 108 f~~ds~-~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt-~v~sL 181 (334)
T KOG0278|consen 108 FSQDSN-YLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGT-EVQSL 181 (334)
T ss_pred ecccch-hhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCc-EEEEE
Confidence 999998 9999999999999999765432 467889999999999998887 88888999999999999996 55555
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
. .+..|+++..++++ .+ ++-...+.|++||..+.. ++..++. ...|.+.+.+|+. ..+++|++|..++.||
T Consensus 182 ~-~~s~VtSlEvs~dG-~i-lTia~gssV~Fwdaksf~----~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 182 E-FNSPVTSLEVSQDG-RI-LTIAYGSSVKFWDAKSFG----LLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFD 252 (334)
T ss_pred e-cCCCCcceeeccCC-CE-EEEecCceeEEecccccc----ceeeccC-ccccccccccCCC-ceEEecCcceEEEEEe
Confidence 4 45679999999999 54 445567899999999988 6777764 6679999999966 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+.++.+. -.+..+++.+|.+|.|+|+|. +.+++++|| |++|.+...
T Consensus 253 y~TgeEi-----------------------~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 253 YNTGEEI-----------------------GSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccCCcee-----------------------eecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 9998532 112334456899999999995 999999999 999988654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=203.82 Aligned_cols=250 Identities=17% Similarity=0.266 Sum_probs=198.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.||...|+.+.++|+. ..+++++.|-.|+||.... .........|..+|+.+.
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~---------------------~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL---------------------SSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred hhhhccCcceEEEEEEeccch-hheeecCCcceEEeecccc---------------------ccCccccccccccceeee
Confidence 335788999999999999998 7888999999999999987 234455678999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
.+|.+. +|+++++||+..+.|++++........ ....-.+++++|+|+|- +|++|..||.|+|||+..+. .+..|
T Consensus 311 ~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~--~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~-~~a~F 385 (506)
T KOG0289|consen 311 LHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSD--ETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT-NVAKF 385 (506)
T ss_pred eccCCc-EEEEecCCceEEEEEccCCcEEEEEee--ccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc-ccccC
Confidence 999998 999999999999999998765432111 12234589999999998 99999999999999999886 67889
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.+|.++|..|+|+-+| ++||++++|+.|++||+|..+ ...++.- ...+|.++.|.+.+ .+|+.++.|=+|+++
T Consensus 386 pght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYIC 459 (506)
T ss_pred CCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEcCCC-CeEEeecceeEEEEE
Confidence 9999999999999999 999999999999999999987 4555543 23479999999955 899999888777777
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+-.+..-. ++...+.+....+.+.|.... .++++++.|. ++++.
T Consensus 460 ~k~~k~W~----------------------~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 460 KKKTKSWT----------------------EIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYA 504 (506)
T ss_pred ecccccce----------------------eeehhhhcccccceeeecccc-eEEeeccchhheEEee
Confidence 64443211 111222211246777777766 5899999996 55543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=205.82 Aligned_cols=245 Identities=16% Similarity=0.248 Sum_probs=204.0
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+|...|.+++.++++ .+||||+.|..|.||+..+ .+++..+.+|.+.|.+++|-...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t---------------------~ehv~~~~ghr~~V~~L~fr~gt 256 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT---------------------LEHVKVFKGHRGAVSSLAFRKGT 256 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc---------------------cchhhcccccccceeeeeeecCc
Confidence 4999999999999999 8999999999999999998 78888999999999999998766
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
. .|++++.|++|++|++..... ..++.+|.+.|.+|.-..-++ .+.+|+.|+++++|++... ....+.+|.+
T Consensus 257 ~-~lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ee--sqlifrg~~~ 328 (479)
T KOG0299|consen 257 S-ELYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEE--SQLIFRGGEG 328 (479)
T ss_pred c-ceeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccc-eEEeccccceeEEEecccc--ceeeeeCCCC
Confidence 5 999999999999999976443 356889999999999888887 7777779999999999543 4567889999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cC-----------CCCeEEEEEeCCCCCEEEEEeCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YH-----------KHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h-----------~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+.|++|-.+. .|++|+++|.|.+|++-..+ |+.+.. +| ..+|++++..| +..++|+||.+
T Consensus 329 sidcv~~In~~--HfvsGSdnG~IaLWs~~KKk----plf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~ 401 (479)
T KOG0299|consen 329 SIDCVAFINDE--HFVSGSDNGSIALWSLLKKK----PLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWS 401 (479)
T ss_pred CeeeEEEeccc--ceeeccCCceEEEeeecccC----ceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCC
Confidence 99999998755 79999999999999999887 565543 22 23899999999 55999999999
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
|.|++|-+..+-. +.++++...-..-|++++|++++..++++.+... +-=|...
T Consensus 402 G~vrLW~i~~g~r---------------------~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 402 GCVRLWKIEDGLR---------------------AINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred CceEEEEecCCcc---------------------ccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 9999999987632 2345555543346999999999988888888765 5445443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=199.68 Aligned_cols=229 Identities=14% Similarity=0.249 Sum_probs=183.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|++++.+.+|+|+| .++|||+.|..|+|.|+........... ....... .....+.++..|.++|++|+|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~e-m~~~~~q--a~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKE-MISGDTQ--ARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhh-hccCCcc--cCCceEeehhhccCcccceeec
Confidence 3577899999999999999 8999999999999999986433221111 0000000 0124577899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-- 320 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-- 320 (479)
|... +|++|+.|++|++||+....... .........+|.+|.|+|.|. +++.|..--++++||+.+.+ +....
T Consensus 182 Pre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Q-cfvsanP 256 (430)
T KOG0640|consen 182 PRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQ-CFVSANP 256 (430)
T ss_pred chhh-eEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEecccee-EeeecCc
Confidence 9998 99999999999999997643211 122233467899999999999 89999999999999999975 43332
Q ss_pred -ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCC-CCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 321 -KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHK-HPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 321 -~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~-~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
..|...|+++.+++.+ ++.++|+.||.|+|||--+.+ ++.++. +|. ..|.+..|..++ .+++++|.|..|+
T Consensus 257 d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r----Cv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR----CVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVK 330 (430)
T ss_pred ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH----HHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceee
Confidence 5688999999999999 999999999999999988877 677764 465 468999999855 9999999999999
Q ss_pred EEECCCCCC
Q 039302 398 IWDLSLEKD 406 (479)
Q Consensus 398 iwdl~~~~~ 406 (479)
+|.+.++..
T Consensus 331 LWEi~t~R~ 339 (430)
T KOG0640|consen 331 LWEISTGRM 339 (430)
T ss_pred eeeecCCce
Confidence 999998864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=190.07 Aligned_cols=222 Identities=21% Similarity=0.326 Sum_probs=181.7
Q ss_pred eeEEEEecCCcceeEEEEec--CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMS--QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.+...+.+|.|+|+.+.|.. .| .+||+++.||.|.||.-... .......+..|...|+
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g-------------------~w~k~~e~~~h~~SVN 106 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENG-------------------RWTKAYEHAAHSASVN 106 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCC-------------------chhhhhhhhhhcccce
Confidence 56678999999999999976 55 89999999999999998773 2455667788999999
Q ss_pred EEEeCCCCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---C----------CcEEEEEeCCC
Q 039302 238 AIDWNPVAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---E----------SDVFASCSVDG 303 (479)
Q Consensus 238 ~l~~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~----------~~~l~s~s~dg 303 (479)
+++|.|...+ .|++++.||.|.|.+.+..+.+.. ......|.-.|++++|.|. | ...|++|+.|.
T Consensus 107 sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 107 SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred eecccccccceEEEEeeCCCcEEEEEEcCCCCccc-hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence 9999999877 688899999999999988655443 4567889999999999997 3 12599999999
Q ss_pred cEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 NIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 ~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~---~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|+||+.....- .-.++.+|...|..++|.|.. ...||+++.||+|.||-.+.... .-....+......++.+.|
T Consensus 186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-~wk~tll~~f~~~~w~vSW 264 (299)
T KOG1332|consen 186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-PWKKTLLEEFPDVVWRVSW 264 (299)
T ss_pred ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-cccccccccCCcceEEEEE
Confidence 999999988632 233479999999999999965 35899999999999998874322 1122334445778999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
++.+ ++|+.++.|+.|++|.-+..
T Consensus 265 S~sG-n~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 265 SLSG-NILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eccc-cEEEEecCCcEEEEEEeCCC
Confidence 9965 99999999999999987654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=190.86 Aligned_cols=240 Identities=22% Similarity=0.305 Sum_probs=194.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|.+.|.+|+|+-+| ..+|+|+.|+++.+|++.... ........+|.+.|-.++|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r-------------------~~~~~~~~gh~~svdql~w~ 73 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDR-------------------FRKELVYRGHTDSVDQLCWD 73 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchh-------------------hhhhhcccCCCcchhhheeC
Confidence 3567899999999999999 788999999999999998731 22234567899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|..+.+|++++.|.+|++||++.++.... . ..++.-.-+.|+|++. +++.++.|..|.+.|.|+.+ .+.. ..
T Consensus 74 ~~~~d~~atas~dk~ir~wd~r~~k~~~~----i-~~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~-~~~~-~~ 145 (313)
T KOG1407|consen 74 PKHPDLFATASGDKTIRIWDIRSGKCTAR----I-ETKGENINITWSPDGE-YIAVGNKDDRITFIDARTYK-IVNE-EQ 145 (313)
T ss_pred CCCCcceEEecCCceEEEEEeccCcEEEE----e-eccCcceEEEEcCCCC-EEEEecCcccEEEEEecccc-eeeh-hc
Confidence 99988999999999999999988655321 1 1233445689999999 99999999999999999875 3332 33
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
....++-++|+..+ .+++.-...|+|.|......+ ++..+++|.....||+|+|.+ ++||+|+.|-.+.+||+.
T Consensus 146 ~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk----pv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 146 FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK----PVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVD 219 (313)
T ss_pred ccceeeeeeecCCC-CEEEEecCCceEEEEeccccc----cccccccCCcceEEEEECCCC-ceEeeccccceeeccChh
Confidence 45678899999766 666655667999999998888 899999999999999999965 999999999999999997
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
..-+. .......-+|..+.|+-++. +|||+++|.
T Consensus 220 ELiC~------------------------R~isRldwpVRTlSFS~dg~-~lASaSEDh 253 (313)
T KOG1407|consen 220 ELICE------------------------RCISRLDWPVRTLSFSHDGR-MLASASEDH 253 (313)
T ss_pred Hhhhh------------------------eeeccccCceEEEEeccCcc-eeeccCccc
Confidence 65331 12222224799999999995 999999994
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=203.72 Aligned_cols=265 Identities=18% Similarity=0.264 Sum_probs=210.1
Q ss_pred EEecCCcceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....|.+.|++++|+|..+ .++|+|...|+|-+||+..+.. ...-+..+..|+.+|.+|.|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------d~d~v~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------DKDGVYLFTPHSGPVSGLKFS 243 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------ccCceEEeccCCccccceEec
Confidence 4556889999999999876 8999999999999999963211 244567788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+..++++.+.||+|++-|++......+ ...........+++|+.... .++.+..=|...+||+|+.+.....+..
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v--~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEV--LSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHH--hhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh
Confidence 99998999999999999999977433221 22223455678889998888 5555555569999999999866777788
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++|+++|..+.+|||+|.|++++|||+|.......|+...-.|..+|.++.|||.++. |++.+.|+.|+|||..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 999999999999999999999999999999999987644455556679999999999998866 9999999999999986
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC----CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK----DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~----~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
-.. ...+|.....|.... ......|+|+.. +|+.+..-. |-||+...
T Consensus 400 ~~s-------------------a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 400 CIS-------------------AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred ccc-------------------ccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCC
Confidence 221 133445566666443 366789999874 777777765 77776644
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=215.36 Aligned_cols=253 Identities=18% Similarity=0.294 Sum_probs=205.9
Q ss_pred cCCccee---EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 167 AHQGCVN---RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 167 ~H~~~V~---~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.|...|+ .+..+..+.++|.||+.||.|++|++......+. ...+.++..|.+-|+.+....
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s---------------~~~~asme~HsDWVNDiiL~~ 83 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS---------------TPYIASMEHHSDWVNDIILCG 83 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc---------------cchhhhhhhhHhHHhhHHhhc
Confidence 4556666 6666666767899999999999999988544331 224677889999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE-CCCCCcEEEEEeCCCcEEEEEcCCCCc-------
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW-SPTESDVFASCSVDGNIAIWDTRVGKS------- 315 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~-sp~~~~~l~s~s~dg~I~iwD~~~~~~------- 315 (479)
+++ .|+|++.|-+|++|+......+. ...+..|...|.|++. -++.. ++|+||.|+.|.+||+.++..
T Consensus 84 ~~~-tlIS~SsDtTVK~W~~~~~~~~c--~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 84 NGK-TLISASSDTTVKVWNAHKDNTFC--MSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred CCC-ceEEecCCceEEEeecccCcchh--HhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc
Confidence 998 99999999999999998765333 4668889999999999 55554 999999999999999997621
Q ss_pred --eeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 316 --ALMSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 316 --~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
....+. ++...|.+++.++.+ .+|++|+..+.+++||.|+.+ .+..+++|+..|..+-.++++ ..++++|.
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDG-t~~ls~sS 233 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDG-TRLLSASS 233 (735)
T ss_pred ccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCC-CeEeecCC
Confidence 222233 788899999999999 999999999999999999998 688899999999999999955 99999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
||+|++|||....+. ..+..|. ..|+++.-+|.-. .+.+|+.+| |..=++.+
T Consensus 234 DgtIrlWdLgqQrCl----------------------~T~~vH~--e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCL----------------------ATYIVHK--EGVWALQSSPSFT-HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred CceEEeeecccccee----------------------eeEEecc--CceEEEeeCCCcc-eEEecCCCCcEEecccCC
Confidence 999999999887642 3344454 5699999999875 677888777 44444444
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=212.62 Aligned_cols=237 Identities=21% Similarity=0.366 Sum_probs=193.9
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
.+-+.|+..+ +||.|. ...|++|+-.. .........+...|+++.|+++|. +|++
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s---------------------~~v~~l~~~~~~~vtSv~ws~~G~-~Lav 234 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASS---------------------GSVTELCSFGEELVTSVKWSPDGS-HLAV 234 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCC---------------------CceEEeEecCCCceEEEEECCCCC-EEEE
Confidence 4557777544 777744 45799999887 232233333478999999999998 9999
Q ss_pred EeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 252 GDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
|..+|.|.|||..+... ...+.+ |...|-+++|+ +. .+.+|+.|+.|.++|+|..+..+..+.+|...|..+
T Consensus 235 G~~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKK----TRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred eecCCeEEEEehhhccc----cccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 99999999999977544 244566 99999999998 33 899999999999999999875555588999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC--CCcEEEEECCCCCChH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA--DNQLTIWDLSLEKDEE 408 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~--Dg~I~iwdl~~~~~~~ 408 (479)
.|++++ .+||+|+.|+.+.|||..... +...+..|.+.|.+++|+|....+||+|+. |++|++||...+..
T Consensus 308 kws~d~-~~lASGgnDN~~~Iwd~~~~~----p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-- 380 (484)
T KOG0305|consen 308 KWSPDG-NQLASGGNDNVVFIWDGLSPE----PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-- 380 (484)
T ss_pred EECCCC-CeeccCCCccceEeccCCCcc----ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--
Confidence 999999 999999999999999997666 889999999999999999999999999875 99999999998742
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC--ceEEeeecc
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG--FNILMPSNI 470 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg--i~iw~~~~~ 470 (479)
+-.... ...|..|.|++....++.+.|... |.||+..++
T Consensus 381 ----------------------i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 381 ----------------------IDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred ----------------------eccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 111222 246999999999877777776654 899998765
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=214.64 Aligned_cols=217 Identities=20% Similarity=0.299 Sum_probs=183.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|.+.|+.++.+|++ .-++|||.|.+|++||+....... +. ..+........++. -...|.|+.+||
T Consensus 449 ti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~---gt-----~~k~lsl~~~rtLe-l~ddvL~v~~Sp 518 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVP---GT-----QKKVLSLKHTRTLE-LEDDVLCVSVSP 518 (888)
T ss_pred hhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccC---cc-----cceeeeeccceEEe-ccccEEEEEEcC
Confidence 344899999999999999 677799999999999987532200 00 00000111122232 346899999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
++. +||.+--|.+++||-+.+.+.. ..+-||.-||.|+..+|+++ +++|||.|+.|+||-+.-+. |..++.+|
T Consensus 519 dgk-~LaVsLLdnTVkVyflDtlKFf----lsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGD-CHKS~fAH 591 (888)
T KOG0306|consen 519 DGK-LLAVSLLDNTVKVYFLDTLKFF----LSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGD-CHKSFFAH 591 (888)
T ss_pred CCc-EEEEEeccCeEEEEEecceeee----eeecccccceeEEeccCCcC-eEEeccCCCceEEeccccch-hhhhhhcc
Confidence 998 9999999999999999875442 34779999999999999999 99999999999999999886 88999999
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...|.++.|-|.. .++.++|.|+.|+-||-.... .+.++.+|...|++++.+|++ .+++++|.|..|++|....
T Consensus 592 dDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe----~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE----EIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccc-eeEEEecCcceEEeechhhhh----hheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccC
Confidence 9999999999987 999999999999999999998 799999999999999999965 9999999999999999776
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-26 Score=224.94 Aligned_cols=240 Identities=22% Similarity=0.398 Sum_probs=206.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....|...|.+++.-..+ ..+++|+.+..+.+|.+.. ..++..|.+|..+|-+|.|++
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k---------------------p~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK---------------------PNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccC---------------------CchhheeeccCCcceeeecCc
Confidence 355799999999985444 8899999999999999987 566667999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
... +|++|+.+|+|++||+..... .+.+.+|...+..+.|+|-+. ++|+|+.|+.+++||+|... |...+.+|
T Consensus 81 ~E~-LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~G-c~~~~~s~ 153 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKG-CSHTYKSH 153 (825)
T ss_pred chh-hhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccceE-EeccccccccceehhhhccC-ceeeecCC
Confidence 987 999999999999999987544 357899999999999999999 88999999999999999764 88899999
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...|.++.|+|+| .++++|++|.+++|||++.++ .+..|..|.+.|.++.|+|.+ .++++||.|++|++||+.+
T Consensus 154 ~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk----~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 154 TRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGK----LSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred cceeEEEeecCCC-ceeeccCCcceeeeecccccc----cccccccccccccccccCchh-hhhccCCCCceeeeeccce
Confidence 9999999999999 999999999999999999988 799999999999999999966 9999999999999999986
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCCceE
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADGFNI 464 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dgi~i 464 (479)
.. ++-.-.. ..+|.+++|+|++. .+.++-...+..
T Consensus 228 fe-------------------------~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~sl~~ 263 (825)
T KOG0267|consen 228 FE-------------------------VISSGKPETDGVRSLAFNPDGK-IVLSGEQISLSE 263 (825)
T ss_pred eE-------------------------EeeccCCccCCceeeeecCCce-eeecCchhhhhh
Confidence 52 1211111 23699999999984 566665555553
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=191.36 Aligned_cols=238 Identities=18% Similarity=0.327 Sum_probs=181.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.+|+|+|+...+++.+|.||+|++|+++.... ..+ .....|.++|.+++|+.++. .
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------~~~-ka~~~~~~PvL~v~Wsddgs-k 86 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------LVP-KAQQSHDGPVLDVCWSDDGS-K 86 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc------------------ccc-hhhhccCCCeEEEEEccCCc-e
Confidence 467999999997778998999999999999987311 122 33456889999999999997 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceeeEEe------
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALMSFK------ 321 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~~~~------ 321 (479)
+++|++|+.+++||+.+++. ..+..|.++|..+.|-+... ..|++||.|++|+.||+|... ++.++.
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~-----~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPeRvY 160 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQV-----SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPERVY 160 (347)
T ss_pred EEeeccCCceEEEEccCCCe-----eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeeeccceee
Confidence 99999999999999998754 55778999999999976543 379999999999999999764 222211
Q ss_pred -------------------------------cC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE
Q 039302 322 -------------------------------AH----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366 (479)
Q Consensus 322 -------------------------------~h----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~ 366 (479)
.+ .-.+.||+..++. ...|.|+-.|.+.|..+..... ..-.+
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFt 237 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFT 237 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCcee
Confidence 01 1235677777766 4558888899888888876531 14456
Q ss_pred eecCCC---------CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC
Q 039302 367 FEYHKH---------PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG 437 (479)
Q Consensus 367 ~~~h~~---------~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g 437 (479)
|+.|.. +|++|+|+|.. ..|+|+|.||++.+||-.... .|...-..
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~------------------------kLk~s~~~ 292 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART------------------------KLKTSETH 292 (347)
T ss_pred EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh------------------------hhhccCcC
Confidence 777762 57889999965 899999999999999976542 12221223
Q ss_pred CCCeeeEEEeCCCCcEEEEEcCC
Q 039302 438 QKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 438 ~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
..+|++..|+.+|..++...+.|
T Consensus 293 ~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 293 PQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCccceeEecCCCCEEEEEeecc
Confidence 35899999999998777777776
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-25 Score=198.71 Aligned_cols=307 Identities=19% Similarity=0.269 Sum_probs=219.9
Q ss_pred CeeecCCcccCCCCceeeeChhHHHhhhcccccCceeeEEEeeCC---------CCCC--------cccCCce-------
Q 039302 38 TKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDT---------LGLV--------RNEFPYT------- 93 (479)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~---------~~~~--------~~~~~~~------- 93 (479)
+.|+.++. ..|..+|-..+|-.--+..+.||.=++.+|.-. .++. ...+|..
T Consensus 75 fDVi~D~L----G~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~~i~h 150 (440)
T KOG0302|consen 75 FDVIPDRL----GDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMKSIPH 150 (440)
T ss_pred eeeecCCC----CcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhcccccccccccc
Confidence 45554433 246677888999999999999998877776521 0100 0112311
Q ss_pred -------------EEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCce
Q 039302 94 -------------AYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPI 160 (479)
Q Consensus 94 -------------~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~ 160 (479)
.-.++++. .+.+.+.||.+....+.-. ++.... -+ - ...|+
T Consensus 151 ~g~~NRvr~~~~~~~~~~asw---se~G~V~Vw~l~~~l~~l~---------------~~~~~~---~~-s----~~~Pl 204 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASW---SENGRVQVWDLAPHLNALS---------------EPGLEV---KD-S----EFRPL 204 (440)
T ss_pred ccccceeeecccCCcceeeee---cccCcEEEEEchhhhhhhc---------------Cccccc---cc-c----ccCce
Confidence 11333333 3577899998853322111 000000 00 0 01444
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+.+.+|.+.=+.|+|+|-....++||..-+.|++|...+..=. .-...|.+|+..|-.|+
T Consensus 205 --~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~------------------vd~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 205 --FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK------------------VDQRPFTGHTKSVEDLQ 264 (440)
T ss_pred --EEecccCccceeeecccccccccccCccccceEeeeeccCcee------------------ecCccccccccchhhhc
Confidence 4788999999999999966566888888899999998762111 11233667999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ceee
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALM 318 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~~~ 318 (479)
|||...+.|+||++||+|+|||++.+..... ...+.|.+.|+-|.|+.... +||+|+.||+++|||+|+-+ .++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~--~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAA--VSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccce--eEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcce
Confidence 9999999999999999999999988644222 23478999999999999988 99999999999999999764 3788
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC---------C---ceEEEeecC--CCCeEEEEEeCCCC
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------D---SVVAHFEYH--KHPVTSIEWSPHEG 384 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------~---~~~~~~~~h--~~~I~~v~~sp~~~ 384 (479)
.++-|..+|++|.|+|.....|++++.|.+|.|||+..-... . -|-+.+-.| ...|-.|.|+++.+
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP 421 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP 421 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence 999999999999999999899999999999999998654320 0 111122234 34688899999999
Q ss_pred CEEEEEeCCCcEE
Q 039302 385 STLAVSSADNQLT 397 (479)
Q Consensus 385 ~~las~s~Dg~I~ 397 (479)
.+|++.+.||.-.
T Consensus 422 G~lvsTa~dGfnV 434 (440)
T KOG0302|consen 422 GLLVSTAIDGFNV 434 (440)
T ss_pred CeEEEecccceeE
Confidence 9999999998443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=191.42 Aligned_cols=206 Identities=18% Similarity=0.325 Sum_probs=174.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|+..|+++.|+.++ .+||||.-+|.|+||...+ +.....+......+.=|.
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st---------------------g~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST---------------------GGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc---------------------CceEEEeecccCceEEEE
Confidence 446889999999999999999 8999999999999999988 444455544556788899
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|.+. .|+.|+.||.+-+|.+.+... .+.+.+|+.++++=.|.|+|+ .++++..||+|++|+..+++ ++..+
T Consensus 156 WHp~a~-illAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~-p~~~~ 228 (399)
T KOG0296|consen 156 WHPRAH-ILLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQ-PLHKI 228 (399)
T ss_pred eccccc-EEEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCCc-eeEEe
Confidence 999887 999999999999999987533 356889999999999999999 99999999999999987653 11111
Q ss_pred e-------------------------------------------------------------------------------
Q 039302 321 K------------------------------------------------------------------------------- 321 (479)
Q Consensus 321 ~------------------------------------------------------------------------------- 321 (479)
.
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 1
Q ss_pred ----------------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 322 ----------------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 322 ----------------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
.|...|..+.|-+ . .+|++++.+|.|+.||.|+++ ++.++.+|..+|.+++.+|+. +
T Consensus 309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~----l~~~y~GH~~~Il~f~ls~~~-~ 381 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHICEHEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQ----LKFTYTGHQMGILDFALSPQK-R 381 (399)
T ss_pred eEEEEecccchhheeccCCCceEEEEEcC-c-chheeeccCceEEeeeccccc----eEEEEecCchheeEEEEcCCC-c
Confidence 2334566777776 3 688999999999999999998 899999999999999999955 9
Q ss_pred EEEEEeCCCcEEEEECC
Q 039302 386 TLAVSSADNQLTIWDLS 402 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~ 402 (479)
+++|+|.|++.+||+..
T Consensus 382 ~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 382 LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCCCeEEEEecC
Confidence 99999999999999864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-23 Score=174.31 Aligned_cols=268 Identities=17% Similarity=0.287 Sum_probs=195.1
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+.+..+....-...|.+++|+|.| .+.|.|+...+++|-........-. ..... ..........-+.|.+.|+
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~-~hea~-----~~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRH-AHEAA-----KQPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred cceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCccc-ccccc-----cCCCeEEeeeccccCccEE
Confidence 344445566677899999999999 7999999999999987654211100 00000 0000111223456889999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCC---CCcEEEEEeC-CCcEEEEEcCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPT---ESDVFASCSV-DGNIAIWDTRV 312 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~-dg~I~iwD~~~ 312 (479)
|.+|+|.+. +|++|++|.+|++..++......+ ....|..|.+.|.+++|..+ +..+|++++. |-.|.+-|...
T Consensus 94 c~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 94 CTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999999998 999999999999987765433111 12347789999999999543 3337777663 56677778777
Q ss_pred CCceeeEEecCCCCEEEE-EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--C-----CCCeEEEEEeCCCC
Q 039302 313 GKSALMSFKAHNADVNVI-SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--H-----KHPVTSIEWSPHEG 384 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l-~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h-----~~~I~~v~~sp~~~ 384 (479)
++ ....+.+|.+-|.++ .|+ + .++++|+.|.+|++||+|-.. ++.++.. | ...|.+|+..|.+
T Consensus 173 g~-~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~vdpsg- 243 (350)
T KOG0641|consen 173 GQ-GFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVAVDPSG- 243 (350)
T ss_pred CC-cceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEEECCCc-
Confidence 75 788889999988876 455 4 899999999999999999887 5665532 2 3579999999965
Q ss_pred CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 385 STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
++|++|-.|....+||++.+.. +...|.+...|.++.|+|.. +.+.+++.|. |+
T Consensus 244 rll~sg~~dssc~lydirg~r~------------------------iq~f~phsadir~vrfsp~a-~yllt~syd~~ik 298 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRM------------------------IQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIK 298 (350)
T ss_pred ceeeeccCCCceEEEEeeCCce------------------------eeeeCCCccceeEEEeCCCc-eEEEEecccceEE
Confidence 9999999999999999998742 22334444689999999976 5788888885 65
Q ss_pred EEee
Q 039302 464 ILMP 467 (479)
Q Consensus 464 iw~~ 467 (479)
+-++
T Consensus 299 ltdl 302 (350)
T KOG0641|consen 299 LTDL 302 (350)
T ss_pred Eeec
Confidence 5544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=183.54 Aligned_cols=245 Identities=15% Similarity=0.198 Sum_probs=193.3
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-.+.|+++.|+++| .++++++.|.+++|||... ++.+.++..+.-.+..+.|-....
T Consensus 13 ~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~---------------------g~~~~ti~skkyG~~~~~Fth~~~- 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLS---------------------GKQVKTINSKKYGVDLACFTHHSN- 69 (311)
T ss_pred CCCceeEEEecCCC-CEEEEecCCCeEEEEEcCC---------------------CceeeEeecccccccEEEEecCCc-
Confidence 56899999999999 5566679999999999987 677778877777788888877766
Q ss_pred eEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 248 RLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 248 ~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.++.++. |.+|+.-++.+.+. .+.|.||...|++|+.+|-+. .|++++.|++|++||+|..+ +...+...
T Consensus 70 ~~i~sStk~d~tIryLsl~dNky----lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~-cqg~l~~~-- 141 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKY----LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK-CQGLLNLS-- 141 (311)
T ss_pred eEEEccCCCCCceEEEEeecCce----EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC-CceEEecC--
Confidence 6666666 78999999987554 367999999999999999997 99999999999999999765 44444333
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC---CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH---KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h---~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.-..++|.|.| -++|++.....|++||+|+... .|..+|... ....+.|+|+|++ ..|+.+...+.+++.|.-
T Consensus 142 ~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 142 GRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAF 217 (311)
T ss_pred CCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEcc
Confidence 33557999999 8899988888999999999863 255555543 6678999999965 888888889999999987
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+.. .+.+..+.... --.+..|.|++. +++++++|| |++|++.+.
T Consensus 218 ~G~~----------------------~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 218 DGTV----------------------KSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCcE----------------------eeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCC
Confidence 7631 13333344333 236789999996 777788877 999998654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=199.80 Aligned_cols=216 Identities=16% Similarity=0.295 Sum_probs=181.0
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
+.+--+|.|+++.-+|.| ++++.|+..|.+++|.+.+ +..+..+.+|-..|+||.|+-
T Consensus 76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss---------------------G~LL~v~~aHYQ~ITcL~fs~ 133 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS---------------------GILLNVLSAHYQSITCLKFSD 133 (476)
T ss_pred hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc---------------------ccHHHHHHhhccceeEEEEeC
Confidence 344557999999999999 7777778999999999998 788888999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCC-----CccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASD-----ATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~-----~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
++. .|+||+.||.|.+|.+..- .....+...|..|+-+|+++...+.+ ...++|+|.|.++++||+..+. .+
T Consensus 134 dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LL 211 (476)
T KOG0646|consen 134 DGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LL 211 (476)
T ss_pred CCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-ee
Confidence 998 9999999999999987431 11222346688999999999987763 2389999999999999999885 44
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC------------CCCceEEEeecCCC--CeEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK------------GGDSVVAHFEYHKH--PVTSIEWSPHE 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~------------~~~~~~~~~~~h~~--~I~~v~~sp~~ 383 (479)
.++ .....+++++..|.+ ..+..|+.+|.|.+.++.... .....+..+.+|.+ +|+|++.+-+
T Consensus 212 lti-~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D- 288 (476)
T KOG0646|consen 212 LTI-TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD- 288 (476)
T ss_pred EEE-ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC-
Confidence 444 356789999999998 899999999999999886554 12345677889998 9999999985
Q ss_pred CCEEEEEeCCCcEEEEECCCCCC
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~ 406 (479)
+.+|++|+.||.|+|||+...+.
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHH
Confidence 59999999999999999988754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=187.12 Aligned_cols=229 Identities=20% Similarity=0.311 Sum_probs=179.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.+|+|+|.+..|||+ +.||.+++|++.. ......+ .|..++.+++|.+.. .
T Consensus 13 ~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~~---------------------~~l~~~~-~~~~plL~c~F~d~~--~ 67 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVS-SWDGSLRLYDVPA---------------------NSLKLKF-KHGAPLLDCAFADES--T 67 (323)
T ss_pred hhceeeEEEcCcCCcEEEE-eccCcEEEEeccc---------------------hhhhhhe-ecCCceeeeeccCCc--e
Confidence 4689999999988667766 7999999999987 2333334 488899999999854 7
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
+++|+.||.|+.+|++++.. ..+..|..+|.||..++... .+++||.|++|++||.|... +...+.. ...|.
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkVy 139 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKVY 139 (323)
T ss_pred EEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc-ccccccc-CceEE
Confidence 99999999999999998765 34677999999999998776 99999999999999999742 4444443 34788
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC--------------------------------------------ceE
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGD--------------------------------------------SVV 364 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~--------------------------------------------~~~ 364 (479)
++..+. +.|++|+.+..|.+||+|+..... ..-
T Consensus 140 ~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 140 CMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred EEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 888774 678999999999999999765310 112
Q ss_pred EEeecCC---------CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 365 AHFEYHK---------HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 365 ~~~~~h~---------~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
..|+.|. .||++|+|+|.. ..||||+.||.|.+||+...+ .+...|
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK------------------------rl~q~~ 271 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK------------------------RLKQLA 271 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh------------------------hhhhcc
Confidence 2344453 379999999964 899999999999999998875 334445
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEc
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
.-...|..++|+-+|..|.++++
T Consensus 272 ~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCCceEEEEeccCCCeEEEEec
Confidence 44457999999999975555444
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=209.96 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=170.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.||.+.|..|.|+.++ +|.++|.|.+|+||++.. ..++..| .|.+-|+|++|+|
T Consensus 364 ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~---------------------~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR---------------------KECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred hhhccchhheecccccCC--eeEeccccccEEeecCCC---------------------cceeeEE-ecCCeeEEEEecc
Confidence 678999999999999987 777889999999999997 6888888 5999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--e
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--K 321 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--~ 321 (479)
....+|++|+-||.|+||++...+. .....-..-|++++|.|+|+ ..+.|+.+|.+++|+++..+ ....+ .
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~V-----v~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk-~~~~~~I~ 492 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKV-----VDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK-LVSDFHIR 492 (712)
T ss_pred cCCCcEeecccccceEEeecCcCee-----EeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe-EEEeeeEe
Confidence 9988999999999999999976433 12233347899999999998 99999999999999999875 22222 1
Q ss_pred cC------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC--CeEEEEEeCCCCCEEEEEeCC
Q 039302 322 AH------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH--PVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 322 ~h------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~--~I~~v~~sp~~~~~las~s~D 393 (479)
.| ...|+.+.|.|.....+++.+.|..|+|||++... ++..|+++.. .-....|+. ++.+|+++++|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~----lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seD 567 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD----LVHKFKGFRNTSSQISASFSS-DGKHIVSASED 567 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh----hhhhhcccccCCcceeeeEcc-CCCEEEEeecC
Confidence 11 22799999999887778888899999999998877 7888887543 335678998 55999999999
Q ss_pred CcEEEEECCC
Q 039302 394 NQLTIWDLSL 403 (479)
Q Consensus 394 g~I~iwdl~~ 403 (479)
..|+||++..
T Consensus 568 s~VYiW~~~~ 577 (712)
T KOG0283|consen 568 SWVYIWKNDS 577 (712)
T ss_pred ceEEEEeCCC
Confidence 9999999843
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-24 Score=213.71 Aligned_cols=235 Identities=24% Similarity=0.378 Sum_probs=195.3
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~ 245 (479)
.|...+.+..|+. ..+++++.++++++|+... ...+.. +.||.+.|+++++..-+
T Consensus 206 ~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~---------------------~~~i~~~l~GH~g~V~~l~~~~~~ 261 (537)
T KOG0274|consen 206 TDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNN---------------------GYLILTRLVGHFGGVWGLAFPSGG 261 (537)
T ss_pred cCcchhhhheeec---CeEEecCCCceeEEeeccc---------------------ceEEEeeccCCCCCceeEEEecCC
Confidence 3677888888882 4788999999999999987 555666 99999999999998844
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.+|++|+.|.++++||..++... ..+.+|.+.|.++...+. ++++||.|.+|++|++.++. ++..+.+|..
T Consensus 262 -~~lvsgS~D~t~rvWd~~sg~C~----~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~ 332 (537)
T KOG0274|consen 262 -DKLVSGSTDKTERVWDCSTGECT----HSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGA-CLNLLRGHTG 332 (537)
T ss_pred -CEEEEEecCCcEEeEecCCCcEE----EEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcc-eEEEeccccc
Confidence 49999999999999999887663 557899999999987643 78889999999999999885 7778888999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE- 404 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~- 404 (479)
.|+++..+ + .++++|+.||+|+|||+++++ ++.++.+|...|+++.+.+. ..+++|+.|++|++||+...
T Consensus 333 ~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~----cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 333 PVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGK----CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred cEEEEEec--C-CEEEEEecCceEEEEEhhhce----eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh
Confidence 99999999 4 799999999999999999888 89999999999999988762 89999999999999999988
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++. ..+..|. .-|.++.+.. .+|+|++.|+ |++|+....
T Consensus 404 ~c~----------------------~tl~~h~--~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 404 KCI----------------------HTLQGHT--SLVSSLLLRD---NFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred hhh----------------------hhhcCCc--cccccccccc---ceeEeccccccEEEeecccC
Confidence 321 2222232 2355555443 3788888888 999977654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=203.52 Aligned_cols=278 Identities=16% Similarity=0.198 Sum_probs=203.6
Q ss_pred CceeEEEEecCCcceeEEEEecCC----------CcEEEEEeCCceEEEEeCCCCccccccccccc-------CCCC--C
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQN----------PHICASWADTGHVQVWDFRSHLNALAESETVA-------GHGA--P 218 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~----------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~-------~~~~--~ 218 (479)
++-....+..|...|+.|...|.+ +..+.||+.||+|++|++....+..-...... .+.. .
T Consensus 358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~ 437 (1080)
T KOG1408|consen 358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ 437 (1080)
T ss_pred cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence 333446788999999999888832 34688999999999999987322111000000 0000 0
Q ss_pred cc-------ccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC
Q 039302 219 QV-------LNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT 291 (479)
Q Consensus 219 ~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 291 (479)
.. .-.+......+....+.+++.+|++. .||+|+.-|+|+||++..... ...+..|.+.|.|+.|+..
T Consensus 438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred hhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehhhhh----hhheecccceeEEEeecCc
Confidence 00 00111112223445789999999999 999999999999999976443 3557899999999999853
Q ss_pred --CCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCC---------------------------------
Q 039302 292 --ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA--------------------------------- 336 (479)
Q Consensus 292 --~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~--------------------------------- 336 (479)
+..+||+++.|..|+|||+...-.++.++..|...|+++.|--.+
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred hhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccc
Confidence 334899999999999999987655666777777777776664322
Q ss_pred ---------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 337 ---------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 337 ---------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..++++++.|..|+|||+.+++ ..+.|++ |.+....+...|.+ .+||+++.|.++.+
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK----q~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~ 667 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK----QVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCF 667 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccc----eeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEE
Confidence 2688999999999999999998 6888876 66778899999955 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
+|+..+.+. ..++.|. ..|+.+.|.++..++|...+++.|.||++..
T Consensus 668 ~Df~sgEcv----------------------A~m~GHs--E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVSGECV----------------------AQMTGHS--EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeccchhh----------------------hhhcCcc--hheeeeeecccchhheeecCCceEEEEECch
Confidence 999998643 2245554 4699999999997555555544499999853
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=181.57 Aligned_cols=261 Identities=16% Similarity=0.216 Sum_probs=197.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
-...+|++.|+|+....+. ..++||+.|.+++|||+.. ++.+.+++. ..+|..+.|+
T Consensus 46 Gty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~t---------------------Gk~la~~k~-~~~Vk~~~F~ 102 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVET---------------------GKQLATWKT-NSPVKRVDFS 102 (327)
T ss_pred eeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCC---------------------CcEEEEeec-CCeeEEEeec
Confidence 4678999999999999988 6788999999999999998 778887763 5689999999
Q ss_pred CCCCCeEEEEe-----CCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 243 PVAPGRLVSGD-----CNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 243 ~~~~~~l~sg~-----~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
+.+. +++.+. ..+.|.++|++....... +...+..+.+.++.+-|.|-+. .+++|..||.|.+||++++.
T Consensus 103 ~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 103 FGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred cCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCc
Confidence 9997 555553 346899999975432111 1233455678999999999999 99999999999999999987
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
..+.+...|...|+.|+++|+. .++++|+.|.+-++||.++.. .+.++.. ..||++.+++|....+++.|+.+-
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~----v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLE----VLKTYTT-ERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred eeeechhhhccccccccccCCc-ceEEecccCccceeeecccee----eEEEeee-cccccceecccccceEEecCCcee
Confidence 6777778899999999999999 999999999999999999998 7888774 779999999997755555555543
Q ss_pred -cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 395 -QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 395 -~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
-|.-=..+.++-+... |..-..+.. --+..|- .+|++|+|||+|. ..+||++|| |++...
T Consensus 255 ~dVTTT~~r~GKFEArF--yh~i~eEEi--------grvkGHF--GPINsvAfhPdGk-sYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEARF--YHLIFEEEI--------GRVKGHF--GPINSVAFHPDGK-SYSSGGEDGYVRLHHF 316 (327)
T ss_pred eeeeeecccccchhhhH--HHHHHHHHh--------ccccccc--cCcceeEECCCCc-ccccCCCCceEEEEEe
Confidence 2332233333221111 000000000 1122232 4799999999996 889999999 776654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-21 Score=175.55 Aligned_cols=242 Identities=14% Similarity=0.230 Sum_probs=186.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
....++-.|..++|......++.+ +. |.+|+.-++.. .+.++.|.||...|..|+.
T Consensus 51 ti~skkyG~~~~~Fth~~~~~i~s-Stk~d~tIryLsl~d---------------------NkylRYF~GH~~~V~sL~~ 108 (311)
T KOG1446|consen 51 TINSKKYGVDLACFTHHSNTVIHS-STKEDDTIRYLSLHD---------------------NKYLRYFPGHKKRVNSLSV 108 (311)
T ss_pred EeecccccccEEEEecCCceEEEc-cCCCCCceEEEEeec---------------------CceEEEcCCCCceEEEEEe
Confidence 444556688999998877445543 54 78999999987 7889999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-CceeeEE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG-KSALMSF 320 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~-~~~~~~~ 320 (479)
+|.+. .++|++.|++|++||++..+.... + +...-..++|.|+|- +||++.....|+|||+|.- +.|..++
T Consensus 109 sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~----l--~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 109 SPKDD-TFLSSSLDKTVRLWDLRVKKCQGL----L--NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred cCCCC-eEEecccCCeEEeeEecCCCCceE----E--ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeE
Confidence 99997 999999999999999986544221 1 122334579999998 8999988889999999986 3355555
Q ss_pred e---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe---EEEEEeCCCCCEEEEEeCCC
Q 039302 321 K---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV---TSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 321 ~---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I---~~v~~sp~~~~~las~s~Dg 394 (479)
. ......+.|.|+|+| .+|+.+...+.+++.|.-.+. ...++..+...- .+..|.|++ .++++|+.||
T Consensus 181 ~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg 254 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGT----VKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDG 254 (311)
T ss_pred ccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCc----EeeeEeeccCCCCcceeEEECCCC-cEEEEecCCC
Confidence 3 346778999999999 778888889999999998887 788888766543 578899965 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC--CCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG--QKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g--~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|.+|++.++.. +..-.+ ..++.++.|+|.-. +++ ++...+.+|-+.
T Consensus 255 ~i~vw~~~tg~~-------------------------v~~~~~~~~~~~~~~~fnP~~~-mf~-sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 255 TIHVWNLETGKK-------------------------VAVLRGPNGGPVSCVRFNPRYA-MFV-SASSNLVFWLPD 303 (311)
T ss_pred cEEEEEcCCCcE-------------------------eeEecCCCCCCccccccCCcee-eee-ecCceEEEEecc
Confidence 999999987742 111111 24689999999863 444 444446777654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=191.85 Aligned_cols=276 Identities=16% Similarity=0.169 Sum_probs=208.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~ 241 (479)
.....|.-.|.++.++|++ .++.+++.+|+|.=|++......-.-...... ......++..- ++|..++.+++.
T Consensus 136 ~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev----~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEV----LKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred eeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchh----hhhccCCCCcccccccceeEEEEE
Confidence 4567899999999999999 67779999999999998774322000000000 00012222222 489999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++++. +||+|+.|..|.||+..+... .+.+.+|.+.|.+++|-.... -+.+++.|++|++|++.... .+.++.
T Consensus 211 S~Dgk-ylatgg~d~~v~Iw~~~t~eh----v~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s-~vetly 283 (479)
T KOG0299|consen 211 SSDGK-YLATGGRDRHVQIWDCDTLEH----VKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLS-YVETLY 283 (479)
T ss_pred cCCCc-EEEecCCCceEEEecCcccch----hhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhH-HHHHHh
Confidence 99998 999999999999999988665 355899999999999976544 89999999999999999874 677889
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|..|.-.... ..+-+|+.|+++++|++... ....|.+|.+.+-|++|-. ...|++||.||.|.+|++
T Consensus 284 GHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred CCccceeeechhccc-ceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeee
Confidence 999999999888777 77778889999999999433 4567889999999999985 478999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
...+.....+ .+-.+.+.+ -.-.+...|++++..|.. .|++|++.+| |++|++..-.
T Consensus 356 ~KKkplf~~~-----------~AHgv~~~~-~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 356 LKKKPLFTSR-----------LAHGVIPEL-DPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cccCceeEee-----------ccccccCCc-cccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc
Confidence 8775321100 000011111 001111369999999987 4999999999 9999987653
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=190.38 Aligned_cols=252 Identities=17% Similarity=0.179 Sum_probs=198.5
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..|+.+|+-+.|+++| ++|||++.|.+..||.+.... ..+...++.+|..+|..+.|||
T Consensus 219 il~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wSP 279 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWSP 279 (519)
T ss_pred hHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEECC
Confidence 467899999999999999 899999999999999987632 2456788999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+.. +|++|+.+..+.+||+.++.... ..-.+|..++.+++|.|++. .|++|+.|++|..||+.... .....+-
T Consensus 280 Ddr-yLlaCg~~e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~--~~~W~gv 352 (519)
T KOG0293|consen 280 DDR-YLLACGFDEVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI--LGNWEGV 352 (519)
T ss_pred CCC-eEEecCchHheeeccCCcchhhh---hcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch--hhccccc
Confidence 998 99999999999999999876532 11223568999999999999 89999999999999998652 3333322
Q ss_pred -CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 -NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 -~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|.+++..++| ..+++.+.|..|++|+..... ... +..-..+|++++.|.++ .++++.=.+..|.+||+.
T Consensus 353 r~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~----dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 353 RDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARV----DRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLE 425 (519)
T ss_pred ccceeEEEEEcCCC-cEEEEEecccceeeechhhhh----hhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecc
Confidence 2468999999999 677777789999999987655 222 22235799999999855 888888889999999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.... ++..+.|....-|..-+|--....+++||++|+ |+||+..+.
T Consensus 426 e~~l----------------------v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 426 ENKL----------------------VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred hhhH----------------------HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 4321 133455543334555666665557999999999 999987654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=199.44 Aligned_cols=257 Identities=21% Similarity=0.327 Sum_probs=190.8
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE--EecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV--KFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~ 241 (479)
....|...|..+.|.| +..+|++++.|.++++||+.. ..... .+.||...|.+++|
T Consensus 95 ~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~---------------------s~l~G~~~~~GH~~SvkS~cf 152 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT---------------------SRLVGGRLNLGHTGSVKSECF 152 (720)
T ss_pred ccccccceeEeeccCC-CceeEEEccCCceeeeeeecc---------------------ceeecceeecccccccchhhh
Confidence 5678999999999999 768999999999999999987 23332 47899999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCc-------------cc---cC-------CCCcccCCCcEEE---EEECCCCCcE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDAT-------------WN---VD-------PNPFIGHAASVED---LQWSPTESDV 295 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~-------------~~---~~-------~~~~~~h~~~V~~---l~~sp~~~~~ 295 (479)
.|.++..|++|+.||.|.|||++-... .. .. ......+...|.+ +.+..++. .
T Consensus 153 ~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-t 231 (720)
T KOG0321|consen 153 MPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-T 231 (720)
T ss_pred ccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-e
Confidence 999999999999999999999875431 00 00 0112233334444 44445555 7
Q ss_pred EEEEeC-CCcEEEEEcCCCCc-----e--eeEEecC---CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE
Q 039302 296 FASCSV-DGNIAIWDTRVGKS-----A--LMSFKAH---NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 296 l~s~s~-dg~I~iwD~~~~~~-----~--~~~~~~h---~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~ 364 (479)
||+++. |+.|++||+|.... + ...+..| ...+.++.....|..++|++ .|+.|++|+++... ..++
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s--~sP~ 308 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLS--ISPV 308 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccC--cCch
Confidence 888887 99999999998642 1 1222333 44678888888885555555 59999999999876 3466
Q ss_pred EEeecCCCCe--EEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCee
Q 039302 365 AHFEYHKHPV--TSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLK 442 (479)
Q Consensus 365 ~~~~~h~~~I--~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~ 442 (479)
..+.+|...- ..-..+|++ .+|++|+.|...++|.+... ..|+.++..|. ..|+
T Consensus 309 ~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~---------------------e~~~~~l~Ght--~eVt 364 (720)
T KOG0321|consen 309 AEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSP---------------------EAPPALLLGHT--REVT 364 (720)
T ss_pred hhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCc---------------------cCChhhhhCcc--eEEE
Confidence 6666654321 122457855 99999999999999999987 34556666665 5799
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.++|.|..-.=+++|++|. ++||++.+-
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999998766678888887 999999765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=182.89 Aligned_cols=272 Identities=17% Similarity=0.308 Sum_probs=207.4
Q ss_pred CCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCC
Q 039302 49 EEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPN 128 (479)
Q Consensus 49 ~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~ 128 (479)
+++.|+..++. +.+++|...+.|+|+..| .|| .++|- ...+|.||++..
T Consensus 82 ~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g----~~p---dlLAT------s~D~LRlWri~~----------- 130 (364)
T KOG0290|consen 82 EDSGELVEDAN-------FDHPYPVTKLMWIPDSKG----VYP---DLLAT------SSDFLRLWRIGD----------- 130 (364)
T ss_pred cCCCceeccCC-------CCCCCCccceEecCCccc----cCc---chhhc------ccCeEEEEeccC-----------
Confidence 45556665654 788999999999999765 356 46663 567999999930
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccc
Q 039302 129 KPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAE 208 (479)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~ 208 (479)
||..... ..-....+...|.+++++..|+.-.+++|.+.|-|-+..|||+....
T Consensus 131 -------------------ee~~~~~--~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~----- 184 (364)
T KOG0290|consen 131 -------------------EESRVEL--QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV----- 184 (364)
T ss_pred -------------------cCCceeh--hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-----
Confidence 0000000 01111123456778999999999999999999999999999998831
Q ss_pred cccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE
Q 039302 209 SETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW 288 (479)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 288 (479)
.+.....+-.|..+|+.++|...+...||+.+.||.+++||++....... ...-.....+...++|
T Consensus 185 -------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 185 -------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSW 250 (364)
T ss_pred -------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeecc
Confidence 12234557789999999999998877999999999999999987544221 1111112457889999
Q ss_pred CCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEE
Q 039302 289 SPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVA 365 (479)
Q Consensus 289 sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~ 365 (479)
++++.+++|+-..| ..|.|.|+|.+..++..+..|.+.||.|+|.|.....|+|+++|..+.|||+...-. ...|+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 99999899886655 579999999998899999999999999999999999999999999999999986543 123455
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 366 HFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 366 ~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
.+. -.+.|+.++|+|..+..|+.+..
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEec
Confidence 454 46789999999988888888764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=180.17 Aligned_cols=226 Identities=20% Similarity=0.338 Sum_probs=177.5
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCC---cEEecCCCCceEEEEe
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP---LVKFGGHKDEGYAIDW 241 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~ 241 (479)
...|.|.||++...+....++++|+.||.|.|||++.....-. ..... ...+ ...-.+|.-.|..+.|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~--------k~~c~v~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIA--------KHKCIVAKQHENGHKYAISSAIW 109 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-cccee--------heeeeccccCCccceeeeeeeEE
Confidence 3579999999999998779999999999999999987321100 00000 0111 1122468889999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES--DVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
-|...|.+.+++.|.++++||.++.+... ...-.+.|.+-+|+|-.. .++|+|..+-.|++.|+.++. ...+
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~-----~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~ 183 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAV-----DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHT 183 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeE-----EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceee
Confidence 99999999999999999999998865422 122356788888888532 378888899999999999985 7889
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-----------CceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-----------DSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-----------~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
+.+|...|.++.|+|.....|++|+.||.|++||+|..... .+.+.+-..|.+.|..++|..++ .+++
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~ 262 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLA 262 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhh
Confidence 99999999999999999899999999999999999976320 11222344577889999999854 9999
Q ss_pred EEeCCCcEEEEECCCCCC
Q 039302 389 VSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~ 406 (479)
+++.|.++++|+...+..
T Consensus 263 ~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRN 280 (397)
T ss_pred hccCccceEEeecccCcc
Confidence 999999999999988754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=210.57 Aligned_cols=258 Identities=21% Similarity=0.363 Sum_probs=201.3
Q ss_pred CCcceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
+...|..|..+|++ ..+|||+ .||.+.||+...-.......... -.+.+.+...|.+.|.|+.|+|+|
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~---------l~k~l~~m~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN---------LPKHLCTMDDHDGSVNCVRFSPDG 81 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcc---------cchhheeeccccCceeEEEECCCC
Confidence 34568999999999 7899999 89999999987643222111100 146677888999999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCC---------------ccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 246 PGRLVSGDCNSCIHLWEPASDA---------------TWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~---------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
. +||+|+.|+.|.||...... .|.. ...+.+|...|.+++|+|++. +|+++|.|++|.||+.
T Consensus 82 ~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 82 S-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNA 158 (942)
T ss_pred C-eEeeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccCCCcc-EEEEecccceEEEEcc
Confidence 9 99999999999999987310 0111 244778999999999999998 9999999999999999
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCC
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEG 384 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~ 384 (479)
++. ..+..+.+|.+.|..+.|.|-| .+||+-++|++|+||++.... ..+.+..+ ..-++.+.|+|++
T Consensus 159 ~tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~----i~k~It~pf~~~~~~T~f~RlSWSPDG- 231 (942)
T KOG0973|consen 159 KTF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWG----IEKSITKPFEESPLTTFFLRLSWSPDG- 231 (942)
T ss_pred ccc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccce----eeEeeccchhhCCCcceeeecccCCCc-
Confidence 999 5888999999999999999999 999999999999999987765 45555443 2347899999965
Q ss_pred CEEEEEeC----CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC----------
Q 039302 385 STLAVSSA----DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV---------- 450 (479)
Q Consensus 385 ~~las~s~----Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~---------- 450 (479)
.+|++.-. -.++.|.+-.+.+.. .-+..|. .++..++|+|.-
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~----------------------~~LvGH~--~p~evvrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVD----------------------KDLVGHS--APVEVVRFNPKLFERNNKNGTS 287 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceee----------------------eeeecCC--CceEEEEeChHHhccccccCCc
Confidence 88888644 335666655443211 2344454 589999999821
Q ss_pred --C----cEEEEEcCCC-ceEEeeec
Q 039302 451 --P----GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 451 --~----~ll~s~~~dg-i~iw~~~~ 469 (479)
+ .++|+|+.|+ |.||.+..
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCC
Confidence 1 1789999999 99998744
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=219.22 Aligned_cols=216 Identities=21% Similarity=0.337 Sum_probs=185.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.+...|+|.|..+.|++..++++|+|+.+|.|.|||+++....+ .+- -.....+|.+|+|+
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~-----------------~~~--~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF-----------------TPG--SQAPPSEIKCLSWN 170 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC-----------------CCC--CCCCcccceEeccc
Confidence 57789999999999999998999999999999999999832211 110 11235699999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC--CCcEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCcee
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH--AASVEDLQWSPTESDVFASCSVDG---NIAIWDTRVGKSAL 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~~~~~~~ 317 (479)
......|++++.+|.+.|||++..+. . ..+..+ ...+..|+|+|++.+.+++++.|. .|.+||+|....++
T Consensus 171 rkvqhILAS~s~sg~~~iWDlr~~~p-i---i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 171 RKVSHILASGSPSGRAVIWDLRKKKP-I---IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred hhhhHHhhccCCCCCceeccccCCCc-c---cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 98887999999999999999987533 2 222222 245889999999998899988764 59999999988888
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
..+.+|..+|.+++|++.+..+|++++.|+.|.+|+..+++ .+..+.....++..+.|+|.++.+|++++-||.|.
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 99999999999999999998999999999999999999988 78999988999999999999988999999999999
Q ss_pred EEECCCCC
Q 039302 398 IWDLSLEK 405 (479)
Q Consensus 398 iwdl~~~~ 405 (479)
||.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=197.90 Aligned_cols=238 Identities=18% Similarity=0.252 Sum_probs=197.4
Q ss_pred EEEecCCcceeE-EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNR-IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~-v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
....+|.+-|.. +++.+.....+++|+.|+++.+|.... ..|+.++.+|...|.+++.
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~---------------------~~P~~~LkgH~snVC~ls~ 109 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ---------------------AEPLYTLKGHKSNVCSLSI 109 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCC---------------------CCchhhhhccccceeeeec
Confidence 456678888888 888875546788999999999999987 7899999999999999988
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
..++ .++|||-|.++++|.+.... ..+.+|+.+|..+..-|.+ .++|||.|++|++|.-. ..+.++.
T Consensus 110 ~~~~--~~iSgSWD~TakvW~~~~l~------~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~---~~l~tf~ 176 (745)
T KOG0301|consen 110 GEDG--TLISGSWDSTAKVWRIGELV------YSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG---TLLKTFS 176 (745)
T ss_pred CCcC--ceEecccccceEEecchhhh------cccCCcchheeeeeecCCC--cEEeccCcceeeeccCC---chhhhhc
Confidence 7765 59999999999999875422 3488999999999999987 59999999999999763 3678899
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|..+++-+++ -|++++.||.|++|++ ++. .+..+.+|+.-|+++...+.+ ..++++|+|++++||+.
T Consensus 177 gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge----~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 177 GHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGE----VLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKK 248 (745)
T ss_pred cchhheeeeEEecCC--CeEeecCCceEEEEec-cCc----eeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeec
Confidence 999999999999875 5899999999999999 455 799999999999999966644 89999999999999998
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
..-. +.+ .|. ...|+++..-+++. +++.++++.|+||....
T Consensus 249 ~e~~------------------------q~I-~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 249 DECV------------------------QVI-TLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceE------------------------EEE-ecC-ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 7221 222 232 25799999999985 55555555599997653
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-23 Score=198.75 Aligned_cols=245 Identities=22% Similarity=0.270 Sum_probs=200.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE-
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA- 238 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~- 238 (479)
.+...+.+|...|..+++.+.. .++++|.||++++|+-... .......+.+|.+-|..
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~-------------------~~l~~~~~~~~~g~i~~~ 63 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGK-------------------QYLETHAFEGPKGFIANS 63 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCc-------------------ccccceecccCcceeecc
Confidence 3556788999999998887755 7789999999999997541 23445667788887766
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+++-+...++|++|+.|++|++|.+..... ...+.+|.+.|.++....++. ++|||.|.++++|-+.. +..
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P----~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~---l~~ 134 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEP----LYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE---LVY 134 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCc----hhhhhccccceeeeecCCcCc--eEecccccceEEecchh---hhc
Confidence 888775556899999999999999876544 467899999999999776664 99999999999997764 456
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|.++..-|.+ .++||+.|.+|++|.-. . .+.+|.+|..-|+.+++-|. ..|++++.||.|++
T Consensus 135 ~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--~----~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--T----LLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRL 204 (745)
T ss_pred ccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--c----hhhhhccchhheeeeEEecC--CCeEeecCCceEEE
Confidence 689999999999999976 89999999999999763 2 78899999999999999983 57999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|++..+ .++..|++..-|.+++..+.+ .+++|+++|+ ++||+-...
T Consensus 205 w~~~ge-------------------------~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e~ 251 (745)
T KOG0301|consen 205 WDLDGE-------------------------VLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDEC 251 (745)
T ss_pred EeccCc-------------------------eeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecCce
Confidence 999544 344445444569999955555 5999999999 999987643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-24 Score=198.74 Aligned_cols=211 Identities=17% Similarity=0.244 Sum_probs=169.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE--ecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK--FGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~ 241 (479)
...+|...++|.+|+|.....+.|++.||+++|||++...... +.+.+ ..+..-+++.++|
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-----------------qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-----------------QVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe-----------------eEEeeccCCCcccCceeeec
Confidence 3468999999999999998899999999999999998843211 11111 1133448899999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC--cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA--SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+++++ .||+|..||.|.+|+...... ......-.+|.. .|+||.||++|+ +|++-+.|+++++||+|..+.++..
T Consensus 326 nrdg~-~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 326 NRDGK-LIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred CCCcc-hhhhcccCCceeeeecCCccc-ccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccchhh
Confidence 99998 899999999999999844322 211233456776 899999999999 9999999999999999999877766
Q ss_pred EecC--CCCEEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 320 FKAH--NADVNVISWNRLASCLLASGSD------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 320 ~~~h--~~~v~~l~~~p~~~~~l~sgs~------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
..+- ..+-+.++|+|+. .+|++|.. .|.+.+||.++.. .+..+......|..+.|+|.- +.|++|+
T Consensus 403 ~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d----~v~ki~i~~aSvv~~~WhpkL-NQi~~gs 476 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLD----TVYKIDISTASVVRCLWHPKL-NQIFAGS 476 (641)
T ss_pred hcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEecccee----eEEEecCCCceEEEEeecchh-hheeeec
Confidence 5432 2345778999999 89999864 4789999999998 788888889999999999966 7788888
Q ss_pred CCCcEEEEE
Q 039302 392 ADNQLTIWD 400 (479)
Q Consensus 392 ~Dg~I~iwd 400 (479)
.||.++||-
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 899998764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-24 Score=189.79 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=166.2
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc----CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV----DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
+....+-|..|+|++. +|++|+.||.|-+||..+++...- ....|.-+..+|.|+.|+.+.. .+|+|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEE
Confidence 4456788999999998 999999999999999987643111 1123556789999999999998 999999999999
Q ss_pred EEEcCCCCceeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 307 IWDTRVGKSALMSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 307 iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
+|.++++. |+..+ .+|...|+|++|+.++ ..+++++.|.+++|.-+.+++ ++..|++|+..|+.+.|.+++ .
T Consensus 289 vWri~tG~-ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK----~LKEfrGHsSyvn~a~ft~dG-~ 361 (508)
T KOG0275|consen 289 VWRIETGQ-CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGK----CLKEFRGHSSYVNEATFTDDG-H 361 (508)
T ss_pred EEEEecch-HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccch----hHHHhcCccccccceEEcCCC-C
Confidence 99999996 77777 5999999999999999 889999999999999999998 899999999999999999955 9
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
.++++|.||+|++|+..+..+... | .......+|+.+..-|..|-.++.|...+ +.|
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~T---f-------------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLST---F-------------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhh---c-------------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 999999999999999998765321 1 11111225777777776665555555544 544
Q ss_pred Eee
Q 039302 465 LMP 467 (479)
Q Consensus 465 w~~ 467 (479)
.++
T Consensus 420 mn~ 422 (508)
T KOG0275|consen 420 MNM 422 (508)
T ss_pred Eec
Confidence 443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=192.81 Aligned_cols=247 Identities=19% Similarity=0.261 Sum_probs=200.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+-.|.++|+.+.|.++. ..|+||+.|..|++|++... ....+.++.|..+.|++++|.
T Consensus 169 ~~ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~-------------------k~~~~~tLaGs~g~it~~d~d 228 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGE-------------------KSELISTLAGSLGNITSIDFD 228 (459)
T ss_pred hhhhccccccceeEEccCc-chhhhcchhhhhhhhhcccc-------------------hhhhhhhhhccCCCcceeeec
Confidence 4567899999999999986 58899999999999999873 234567788888999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+++. .+++++.|+.+++|++..... ..++.+|+..|+++.|..... .+++|+.|.+|++||+.... |..++..
T Consensus 229 ~~~~-~~iAas~d~~~r~Wnvd~~r~----~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~-C~kt~l~ 301 (459)
T KOG0288|consen 229 SDNK-HVIAASNDKNLRLWNVDSLRL----RHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY-CSKTVLP 301 (459)
T ss_pred CCCc-eEEeecCCCceeeeeccchhh----hhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh-eeccccc
Confidence 9998 888999999999999987544 366889999999999988776 59999999999999999864 5555432
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...++.|..++ ..+++|-.|+.|++||+|... +......+. .|+++..++++ ..|.+++.|.++.+.|++
T Consensus 302 -~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 302 -GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSAD----KTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLR 371 (459)
T ss_pred -cccccceEecc---eeeeecccccceEEEeccCCc----eeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecc
Confidence 34566677663 679999999999999999988 788888765 99999999955 888888999999999999
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecC---CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG---QKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g---~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+... ...|.-.| ....+.+.|+|.+. ++++|+.|| |+||.+...
T Consensus 372 t~eI-----------------------~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 372 TKEI-----------------------RQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred cccE-----------------------EEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCc
Confidence 8742 11111111 13599999999997 566666666 999988654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=177.66 Aligned_cols=283 Identities=16% Similarity=0.179 Sum_probs=197.1
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.|.....+.+|.+.|++++|+.+| ..|||++.|+.|+||++....+.- .+++..- -.-+--+
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e----------------Hr~~R~n-ve~dhpT 136 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE----------------HRCIRQN-VEYDHPT 136 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh----------------hhHhhcc-ccCCCce
Confidence 455556788999999999999999 789999999999999998743211 1111110 1112457
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cccCCC------CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPN------PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~------~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
.+.|+|+-...++++-...++++|.+..... ...... .-..|.-.|.++-...++. ++++++.|..|.||+
T Consensus 137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~ 215 (420)
T KOG2096|consen 137 RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWD 215 (420)
T ss_pred EEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEe
Confidence 8999999987778887778999998754321 110001 1123566777777777777 999999999999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----CceEEEeecCCCCeEEEEEeCCCCC
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----DSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
++ ++ .+..+......-...+.+|+| .+||+++----|++|.+--.+.. ...+..+++|...|+.++|+|+. .
T Consensus 216 lk-Gq-~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~ 291 (420)
T KOG2096|consen 216 LK-GQ-LLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-T 291 (420)
T ss_pred cC-Cc-eeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-c
Confidence 99 43 667776666667778999999 99999999999999997544321 23467789999999999999955 9
Q ss_pred EEEEEeCCCcEEEEECCCCC----ChHHHHHHhhhccc--ccC-----CC--------------------CCCCCceEEe
Q 039302 386 TLAVSSADNQLTIWDLSLEK----DEEEEAEFKAKTRE--QVN-----AP--------------------EDLPPQLLFI 434 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~----~~~~~~~~~~~~~~--~~~-----~~--------------------~~~p~~l~~~ 434 (479)
.+++.|.||+++|||+.... ++.....+...... ... .+ ...-+++-..
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 99999999999999987642 21111111000000 000 00 0111122222
Q ss_pred ecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 435 HQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 435 h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
|. ..|.+++|+++|. .++++++.-+++++
T Consensus 372 h~--~~Is~is~~~~g~-~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 372 HS--TTISSISYSSDGK-YIATCGDRYVRVIR 400 (420)
T ss_pred hc--CceeeEEecCCCc-EEeeecceeeeeec
Confidence 32 4699999999995 88999988788876
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-22 Score=183.83 Aligned_cols=255 Identities=14% Similarity=0.218 Sum_probs=189.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+...+|.++|+++.|+|.+...+.+.|.||+|++-|++... ...+..+..-......++|+
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i-------------------~e~v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI-------------------SEEVLSLDTDNIWFSSLDFS 288 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchh-------------------hHHHhhcCccceeeeecccc
Confidence 46889999999999999987777788999999999998732 23333443344567788999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMS 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~ 319 (479)
.... .++.|+.=|.+.+||+++.+... ..+.-|...|+.|+++|..+.+||+||.|++++|||+|.... +...
T Consensus 289 ~e~~-~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 289 AESR-SVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred CCCc-cEEEeecccceEEEEeecCCccc---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence 8887 78888888899999998876522 345668889999999999999999999999999999997632 3456
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCC--eEEEEEeCCCCCEEEEEeCCC
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHP--VTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~--I~~v~~sp~~~~~las~s~Dg 394 (479)
...|...|++..|+|.++. |+|-+.|..|+|||..-......+..++.. +..+ ....+|.|+. .+|++|-.-.
T Consensus 365 t~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r 442 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPR 442 (498)
T ss_pred cccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc-cEEEEeccCc
Confidence 6789999999999999966 899999999999998522211114444432 2222 2356899955 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-Ceee-EEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKE-LHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~-v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
.|-|+|-..++ .+...|.... .|.+ .+|||....+++.++..| |.||.
T Consensus 443 ~IDv~~~~~~q------------------------~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 443 PIDVFDGNGGQ------------------------MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ceeEEcCCCCE------------------------EeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999987763 1222243222 3433 589999864555555555 55554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-23 Score=177.73 Aligned_cols=206 Identities=17% Similarity=0.298 Sum_probs=175.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
..+.|+.-|.+++|+.+. +.|+||+.+..++|||++. ...+...+.+|.+.|..+-|+.
T Consensus 95 hsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~--------------------p~App~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 95 HSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNR--------------------PKAPPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccC--------------------CCCCchhhcCCCCcceeEEEec
Confidence 467899999999999988 6777999999999999998 3566677899999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
... .|+|++.|++|++||.+++.... .+ ....+|+++..+++|. +++-...+.|.+||..+.. .+..+. .
T Consensus 154 eD~-~iLSSadd~tVRLWD~rTgt~v~----sL-~~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~-~lKs~k-~ 223 (334)
T KOG0278|consen 154 EDK-CILSSADDKTVRLWDHRTGTEVQ----SL-EFNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFG-LLKSYK-M 223 (334)
T ss_pred cCc-eEEeeccCCceEEEEeccCcEEE----EE-ecCCCCcceeeccCCC--EEEEecCceeEEecccccc-ceeecc-C
Confidence 887 89998999999999999875522 12 2356899999999997 5566667899999999875 555554 3
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|.+.+++|+. .++++|+.|..++.||..++. .+..+ ++|.++|.||.|+|++ .+.|+||+||+|+||.+.
T Consensus 224 P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge----Ei~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 224 PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE----EIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccccccccccCCC-ceEEecCcceEEEEEeccCCc----eeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEec
Confidence 5679999999998 899999999999999999998 45554 8999999999999955 999999999999999998
Q ss_pred CCCC
Q 039302 403 LEKD 406 (479)
Q Consensus 403 ~~~~ 406 (479)
..+.
T Consensus 298 ~~~~ 301 (334)
T KOG0278|consen 298 PGKT 301 (334)
T ss_pred CCCc
Confidence 7753
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-24 Score=207.63 Aligned_cols=202 Identities=22% Similarity=0.401 Sum_probs=180.4
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+|.-...+.+|.++|-+|+|.+.. .+|++|+.+|+|++||+.. .+.+.++.+|...+.
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee---------------------Ak~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE---------------------AKIVRTLTGHLLNIT 116 (825)
T ss_pred CCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh---------------------hhhhhhhhccccCcc
Confidence 454445689999999999999988 8999999999999999997 677789999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.++|+|.+. ++++|+.|+.+++||++..+. ...+.+|...|..+.|+|+|+ ++++++.|.+++|||.+.++ .+
T Consensus 117 sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk-~~ 189 (825)
T KOG0267|consen 117 SVDFHPYGE-FFASGSTDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGK-LS 189 (825)
T ss_pred eeeeccceE-EeccccccccceehhhhccCc----eeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccc-cc
Confidence 999999998 999999999999999986555 356888999999999999999 99999999999999999986 77
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
..|..|...+.++.|+|.. .++++|+.|++|++||+++.. .+.....-...|.+..|+|++ ..+++|....
T Consensus 190 ~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe----~I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~s 260 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE----VISSGKPETDGVRSLAFNPDG-KIVLSGEQIS 260 (825)
T ss_pred cccccccccccccccCchh-hhhccCCCCceeeeeccceeE----EeeccCCccCCceeeeecCCc-eeeecCchhh
Confidence 7889999999999999998 999999999999999999887 677777778899999999965 7777765543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=186.32 Aligned_cols=261 Identities=19% Similarity=0.256 Sum_probs=205.8
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+.+.+.++...|+++.-+|-= .++|.|..+|+|.|+++.. .+.+.+|+.-.+.|+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~---------------------dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKF---------------------DKILMSFKQDWGRVT 248 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEccc---------------------CcEEEEEEcccccee
Confidence 445667889999999999999977 7999999999999999998 677888875568999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-------------------------------------------------
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT------------------------------------------------- 268 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~------------------------------------------------- 268 (479)
.++|..+|...|++|+..|.+.+||++....
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR 328 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR 328 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee
Confidence 9999999988899999889999999865320
Q ss_pred --------------------------------------------------------------------------------
Q 039302 269 -------------------------------------------------------------------------------- 268 (479)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (479)
T Consensus 329 ~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE 408 (910)
T KOG1539|consen 329 SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE 408 (910)
T ss_pred eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh
Confidence
Q ss_pred ------------------ccc----------CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 269 ------------------WNV----------DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 269 ------------------~~~----------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|.. ....++.....+++++.++.|+ +.+.|+..|+|-+|++.++- ...++
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi-~r~sf 486 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGI-HRKSF 486 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCe-eeccc
Confidence 000 0000000124577888888887 78888899999999999984 44555
Q ss_pred ---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------------------
Q 039302 321 ---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG------------------------------------- 360 (479)
Q Consensus 321 ---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~------------------------------------- 360 (479)
.+|...|+.++....+ ..+++++.+|.+++||.......
T Consensus 487 ~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred ccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 5899999999999888 89999999999999998765410
Q ss_pred CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCC
Q 039302 361 DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKD 440 (479)
Q Consensus 361 ~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~ 440 (479)
...++.|.+|++.|+++.|||++ ++|++++.|++|++||+.++. ++-.-.-..+
T Consensus 566 ~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~-------------------------lID~~~vd~~ 619 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGT-------------------------LIDGLLVDSP 619 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcc-------------------------eeeeEecCCc
Confidence 12455677899999999999965 999999999999999999884 3333333457
Q ss_pred eeeEEEeCCCCcEEEEEcCC--CceEEeeecc
Q 039302 441 LKELHWHTQVPGMIVSTAAD--GFNILMPSNI 470 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~d--gi~iw~~~~~ 470 (479)
++.+.|+|++. +||++..| ||.+|--.++
T Consensus 620 ~~sls~SPngD-~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 620 CTSLSFSPNGD-FLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred ceeeEECCCCC-EEEEEEecCceEEEEEchhH
Confidence 99999999996 67776666 4999976555
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=189.06 Aligned_cols=246 Identities=18% Similarity=0.231 Sum_probs=194.9
Q ss_pred cCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecC
Q 039302 89 EFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAH 168 (479)
Q Consensus 89 ~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H 168 (479)
.+|.-.|+++|| ..+.||+|.++ ...+...+.+|
T Consensus 89 s~n~G~~l~ag~-----i~g~lYlWels-----------------------------------------sG~LL~v~~aH 122 (476)
T KOG0646|consen 89 SSNLGYFLLAGT-----ISGNLYLWELS-----------------------------------------SGILLNVLSAH 122 (476)
T ss_pred cCCCceEEEeec-----ccCcEEEEEec-----------------------------------------cccHHHHHHhh
Confidence 456667888875 67789999995 22344566899
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC-C
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP-G 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~ 247 (479)
-..|+|++|+-++ .+|+|||.||.|.+|.+.......... ..+|+..|..|+-+|+++...+-+. .
T Consensus 123 YQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~------------~~~p~~~f~~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 123 YQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDH------------SVKPLHIFSDHTLSITDLQIGSGGTNA 189 (476)
T ss_pred ccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCC------------CccceeeeccCcceeEEEEecCCCccc
Confidence 9999999999999 688899999999999987743332211 3688999999999999999887643 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-------------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------------- 314 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------------- 314 (479)
+|+|++.|.+|++||+..+.... ......++.+++.+|.+. .+..|+.+|.|.+.++....
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLl-----ti~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLL-----TITFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred eEEEecCCceEEEEEeccceeeE-----EEecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCccccccccccccc
Confidence 99999999999999998764422 112356899999999998 99999999999998876542
Q ss_pred --ceeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 315 --SALMSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 315 --~~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
..+..+.+|.+ .|+|++.+-++ .+|++|+.||.|+|||+.+.+ +++++....++|+.+.+.|-....+..-
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q----~iRtl~~~kgpVtnL~i~~~~~~~~l~~ 338 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ----CIRTLQTSKGPVTNLQINPLERGIILFE 338 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH----HHHHHhhhccccceeEeeccccceeccc
Confidence 13445678887 99999999999 999999999999999999888 7888876789999999988654444444
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
+....+..|++...
T Consensus 339 ~~~ps~~~~~lkr~ 352 (476)
T KOG0646|consen 339 HKQPSLPNPHLKRM 352 (476)
T ss_pred ccCccCCchHhhcc
Confidence 44556777776654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=183.57 Aligned_cols=250 Identities=18% Similarity=0.209 Sum_probs=188.0
Q ss_pred ecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEec
Q 039302 100 SQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMS 179 (479)
Q Consensus 100 t~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p 179 (479)
|-++|+-++.|.||++++ ..+...+..|.|.|+.|++..
T Consensus 81 ~~aSGs~DG~VkiWnlsq-----------------------------------------R~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQ-----------------------------------------RECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccCceEEEEehhh-----------------------------------------hhhhheeecccCceeeEEecc
Confidence 334678999999999852 223346789999999999987
Q ss_pred CCCcEEEEEeCCceEEEEeCCCCcccc----------cccccc---cCCC----CCccccCCCcEEecCCCCceEEEEeC
Q 039302 180 QNPHICASWADTGHVQVWDFRSHLNAL----------AESETV---AGHG----APQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 180 ~~~~~lat~s~dg~V~iwd~~~~~~~~----------~~~~~~---~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.-++|++.|.+|+.|-+....... ...... +..+ ........|+..+.--.+.|.++.|+
T Consensus 120 ---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 120 ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred ---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecC
Confidence 346688999999999876521100 000000 0000 00112345777777667789999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.....|++|..|+.|.|||+++....... .-+..-+.|+|+| +...|++++.|..+..||+|....++.....
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KV-----i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~d 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKV-----ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKD 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCcccee-----eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcc
Confidence 999889999999999999999886542211 1234567899999 5568999999999999999999889999999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|.+.|..++|+|.| .-|++||.|.+|+||..+.+... -+.. ..--..|.+|.|+-+. .++++||.|+.|++|...
T Consensus 271 hvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SR--diYh-tkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSR--DIYH-TKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cceeEEEeccCCCc-chhccccccceEEEeecCCCcch--hhhh-HhhhheeeEEEEeccc-cEEEecCCCcceeeeecc
Confidence 99999999999999 89999999999999999877631 1111 0123568999999855 999999999999999876
Q ss_pred CC
Q 039302 403 LE 404 (479)
Q Consensus 403 ~~ 404 (479)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 54
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=170.18 Aligned_cols=245 Identities=21% Similarity=0.330 Sum_probs=181.4
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|+-.|..+.|.|.+..++.++|.|.+++|||.++ .+....|+ -.+.|+.-+|+|-
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT---------------------lQ~a~~F~-me~~VYshamSp~ 154 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT---------------------LQEAVDFK-MEGKVYSHAMSPM 154 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeeccc---------------------ceeeEEee-cCceeehhhcChh
Confidence 3578899999999998888999999999999999998 44445554 3568999999987
Q ss_pred CCC--eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE---
Q 039302 245 APG--RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--- 319 (479)
Q Consensus 245 ~~~--~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--- 319 (479)
... ++|+|..+-.|++.|+..+.. ...+.+|.+.|.++.|+|....+|++|+.||.|++||+|....+...
T Consensus 155 a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 155 AMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred hhcceEEEEecCCCcEEEEeccCCcc----eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 542 788889899999999988755 46789999999999999999989999999999999999976323322
Q ss_pred -----------EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCC----CeEEEEEeCC
Q 039302 320 -----------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKH----PVTSIEWSPH 382 (479)
Q Consensus 320 -----------~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~----~I~~v~~sp~ 382 (479)
-.+|.+.|+.++|..++ .++++++.|..+++|+..++.. .+..+-. |.. .+. +. +-
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~n---tl~~~g~~~~n~~~~~~~~-~~-~~- 303 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRN---TLREFGPIIHNQTTSFAVH-IQ-SM- 303 (397)
T ss_pred ccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcc---cccccccccccccccceEE-Ee-ec-
Confidence 34677899999999999 8999999999999999988764 2221110 111 111 22 22
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+...++---.++.+.++++-.+... .++..| -+.|.+.++-|+-. -+.++..|+
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~i----------------------r~l~~h--~k~i~c~~~~~~fq-~~~tg~~d~n 358 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFV----------------------RRLSTH--LKRINCAAYRPDFE-QCFTGDMNGN 358 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEE----------------------Eeeecc--cceeeEEeecCchh-hhhccccCCc
Confidence 1234444445577777777655311 334444 25688888888875 455666666
Q ss_pred ceEEee
Q 039302 462 FNILMP 467 (479)
Q Consensus 462 i~iw~~ 467 (479)
+..|-+
T Consensus 359 i~~w~p 364 (397)
T KOG4283|consen 359 IYMWSP 364 (397)
T ss_pred cccccc
Confidence 888877
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=172.04 Aligned_cols=224 Identities=22% Similarity=0.341 Sum_probs=165.3
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
-.+.|.+|+|||...++|+.|+-||+|++|+++..+... .+....|.++|.+++|+.+|. .+++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--PKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc--chhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEcc
Confidence 456899999999766688899999999999998754432 255678999999999999997 89999999999999999
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
+++ +..+..|..+|.++.|-+.. ...|+|||.|.+|+.||.|... ++.++.- ...++++..-. .+++.+
T Consensus 103 S~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~~L-PeRvYa~Dv~~---pm~vVa 172 (347)
T KOG0647|consen 103 SGQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATLQL-PERVYAADVLY---PMAVVA 172 (347)
T ss_pred CCC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeeeec-cceeeehhccC---ceeEEE
Confidence 985 67788999999999997655 1489999999999999999887 7887764 56777776642 678888
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhccc------------c------------cCCCCCCCCceEEeecCC----C---
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTRE------------Q------------VNAPEDLPPQLLFIHQGQ----K--- 439 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~------------~------------~~~~~~~p~~l~~~h~g~----~--- 439 (479)
..++.|.+|+|.....+........+.+. . .........-.+.-|... .
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 89999999999876543222111111000 0 000000111223335421 1
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 440 DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.|++|+|||.. +.|++.|.|| +.+|+-..
T Consensus 253 aVNsi~FhP~h-gtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 253 AVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EecceEeeccc-ceEEEecCCceEEEecchh
Confidence 48899999977 5778877787 99997543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=171.14 Aligned_cols=259 Identities=20% Similarity=0.266 Sum_probs=171.6
Q ss_pred EEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecC
Q 039302 185 CASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPA 264 (479)
Q Consensus 185 lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~ 264 (479)
|+.|+....|.=+++........ ........+++.+..|.+.+++++.+ ++ ++|||+.|-+|+|||+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~---------~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCT---------DSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMR 71 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccc---------cccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEecc
Confidence 45677777777777655321100 00111356688999999999999996 45 99999999999999998
Q ss_pred CCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEE
Q 039302 265 SDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASG 343 (479)
Q Consensus 265 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg 343 (479)
+... ...+..|.+.|+++.|.+.- .+.|++|+.||.|.+|+.... .++.++++|...|+.++.+|.+ .+-++.
T Consensus 72 k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~-KLALsV 145 (362)
T KOG0294|consen 72 KRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSG-KLALSV 145 (362)
T ss_pred chhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCC-ceEEEE
Confidence 7544 35677899999999998764 347999999999999999988 4889999999999999999999 899999
Q ss_pred eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHh----hh---
Q 039302 344 SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFK----AK--- 416 (479)
Q Consensus 344 s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~----~~--- 416 (479)
+.|+.+++|++-.++. ..+..+. ..-+.|.|+|.+ .+|+.++.+ .|-||.+....--.+...-+ ..
T Consensus 146 g~D~~lr~WNLV~Gr~--a~v~~L~---~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~ 218 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRV--AFVLNLK---NKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLD 218 (362)
T ss_pred cCCceeeeehhhcCcc--ceeeccC---CcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecC
Confidence 9999999999988763 1122221 112335666543 333333322 34444444322110000000 00
Q ss_pred --------c---ccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC-ceEEeeecc
Q 039302 417 --------T---REQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 417 --------~---~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
. ..........|+..+..|. ..|.++.+- .....+|++++.|| |+||++..-
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 0 0000011134445555565 679998843 22336899999999 999998654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=188.23 Aligned_cols=248 Identities=22% Similarity=0.301 Sum_probs=196.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~ 241 (479)
....|-.-|.++.++... ..+.||+ .|.|+|||+....+ ..|+..+... ..-|..+..
T Consensus 414 ~tL~HGEvVcAvtIS~~t-rhVyTgG-kgcVKVWdis~pg~------------------k~PvsqLdcl~rdnyiRSckL 473 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISQPGN------------------KSPVSQLDCLNRDNYIRSCKL 473 (705)
T ss_pred hhhccCcEEEEEEecCCc-ceeEecC-CCeEEEeeccCCCC------------------CCccccccccCcccceeeeEe
Confidence 345687888888888877 6677855 57899999987422 3344444332 347889999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
.|++. .|++|+.-.++.|||+....... ...+....-.+..++.+|+.+ +.++|..||.|.|||++... .+..+.
T Consensus 474 ~pdgr-tLivGGeastlsiWDLAapTpri--kaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-~Vrqfq 548 (705)
T KOG0639|consen 474 LPDGR-TLIVGGEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-LVRQFQ 548 (705)
T ss_pred cCCCc-eEEeccccceeeeeeccCCCcch--hhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-eeeccc
Confidence 99998 99999999999999997754322 223333345678899999998 88888889999999999864 788999
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...+.||..+++| ..|-||+-|++|+.||+|.+.. +.... ....|.++..+|++ .+|+.|-+.+.|.|-..
T Consensus 549 GhtDGascIdis~dG-tklWTGGlDntvRcWDlregrq----lqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 549 GHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQ----LQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHT 621 (705)
T ss_pred CCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhh----hhhhh-hhhhheecccCCCc-cceeeecccCcEEEEec
Confidence 999999999999999 8999999999999999998873 32222 35689999999976 99999999999888777
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+.. +....|.+.+-|.++.|.+.|. .++|++.|+ ++.|++.-
T Consensus 622 skp-------------------------~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 622 SKP-------------------------EKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred CCc-------------------------cceeecccccEEEEEEecccCc-eeeecCchhhhhhccCcc
Confidence 655 4466677667799999999997 666777776 89998754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=185.42 Aligned_cols=250 Identities=14% Similarity=0.249 Sum_probs=198.8
Q ss_pred CCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 157 GTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 157 ~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
+.|+-.+-...-..-|.++...|++. -|++|+.-.+|.|||+.... ......+......+
T Consensus 453 k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAapT-------------------prikaeltssapaC 512 (705)
T KOG0639|consen 453 KSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAPT-------------------PRIKAELTSSAPAC 512 (705)
T ss_pred CCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeeccCCC-------------------cchhhhcCCcchhh
Confidence 35555444445567799999999994 55577889999999998731 11122233334578
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++|+.+|+.+ ..++|..||+|.|||+..... .+.|.+|+..+.||..+++|. .|-+|+-|.+||.||+|.++++
T Consensus 513 yALa~spDak-vcFsccsdGnI~vwDLhnq~~----VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 513 YALAISPDAK-VCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred hhhhcCCccc-eeeeeccCCcEEEEEccccee----eecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhh
Confidence 9999999998 888999999999999977433 477999999999999999998 8999999999999999998633
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
. . ....+.|.++..+|.+ .+||.|-.++.+.|...+... -..+.-|..-|.++.|.+. +.+|++.+.|+.+
T Consensus 587 q-q-hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~c-GkwfvStGkDnlL 657 (705)
T KOG0639|consen 587 Q-Q-HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLL 657 (705)
T ss_pred h-h-hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEeccc-CceeeecCchhhh
Confidence 2 2 2345789999999999 899999999999888777654 4566778999999999995 5999999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
..|....+. .+|.....+.|.++..+-+.. +|++|+.+. -.||.+
T Consensus 658 nawrtPyGa-------------------------siFqskE~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 658 NAWRTPYGA-------------------------SIFQSKESSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred hhccCcccc-------------------------ceeeccccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 999998773 345544456899999999885 888888874 666654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-20 Score=175.14 Aligned_cols=242 Identities=10% Similarity=0.113 Sum_probs=166.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...+..+.|+|++..++++++.++.|++||+.. .+.+..+..+. .+..++|+|++. .
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~-~~~~~~~~~~g~-~ 86 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT---------------------GEVIGTLPSGP-DPELFALHPNGK-I 86 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCC---------------------CcEEEeccCCC-CccEEEECCCCC-E
Confidence 344788999999966678888899999999876 33344444433 356789999987 5
Q ss_pred EE-EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCceeeEEecCCCC
Q 039302 249 LV-SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-NIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 249 l~-sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
++ +++.++.|++||+.+.... ..+. +...+.+++|+|++. ++++++.++ .+.+||.++.. ...... ....
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~----~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~ 158 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVL----AEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQR 158 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEE----eEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCC
Confidence 54 5566899999999774331 1122 223468899999998 777777665 57788988764 333332 2345
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-----C--CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-----H--PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-----~--~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
..+++|+|++..+++++..++.|++||+++.+ .+..+..+. . ....++|+|++...+++.+.++.|.+|
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 67899999994444566679999999999876 455444221 1 235688999774445555667889999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+..... .....+ ...+.+++|+|++..++++.+.++ |.+|++.+.
T Consensus 235 d~~~~~~-----------------------~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEV-----------------------LDYLLV--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ECCCCcE-----------------------EEEEEe--CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 9976531 011122 236899999999986665556566 999998765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=189.22 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=196.7
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.-...|.++.|+|..++++|.|+.+|.|.+||+......+. ...-.....|..+|+++.|..+..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------s~ls~~~~sh~~~v~~vvW~~~~~ 304 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------SGLSALEVSHSEPVTAVVWLQNEH 304 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------cccccccccCCcCeEEEEEeccCC
Confidence 34578999999999999999999999999999988432210 011122346888999999987544
Q ss_pred C-eEEEEeCCCeEEEEecCCCCccc--cCCCCcc------cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC---C
Q 039302 247 G-RLVSGDCNSCIHLWEPASDATWN--VDPNPFI------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG---K 314 (479)
Q Consensus 247 ~-~l~sg~~dg~I~lwd~~~~~~~~--~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~---~ 314 (479)
+ -|++++.||.|+.|+++.-.... ....... .-...++++.|.+...+.|+.|+..|.|.--.-... .
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 2 59999999999999886532211 0001111 223468999999999999999999999987433222 1
Q ss_pred ----ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 315 ----SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 315 ----~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
+....+..|.+.|+++.++|.+..+|++++ |-+|+||....... |+..+..+...|++++|||..+.+|+++
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~---Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS---PLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC---cchhhhhccceeeeeEEcCcCceEEEEE
Confidence 123456778999999999999977888877 89999999884433 8888888899999999999999999999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
..||.|.||||..... .|......+ ....+.+.|++.+. +|+.|...| +.+|++..
T Consensus 461 d~~G~l~iWDLl~~~~--------------------~Pv~s~~~~--~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDE--------------------EPVLSQKVC--SPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhcccc--------------------CCccccccc--ccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 9999999999987642 222222222 24577888999886 777788777 99999964
Q ss_pred c
Q 039302 470 I 470 (479)
Q Consensus 470 ~ 470 (479)
.
T Consensus 518 ~ 518 (555)
T KOG1587|consen 518 S 518 (555)
T ss_pred h
Confidence 3
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=189.96 Aligned_cols=249 Identities=17% Similarity=0.202 Sum_probs=192.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
..|++.-+.|+|.|+| .+|+|++.||.|++|+..... ..|- ++..++..|.+++...
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~-------------------e~P~-ti~~~g~~v~~ia~~s-- 66 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDE-------------------EEPE-TIDISGELVSSIACYS-- 66 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcc-------------------cCCc-hhhccCceeEEEeecc--
Confidence 5899999999999999 588899999999999987732 1221 2222667777777654
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
++|++|+.+++|++|.+..+... ..+...+-++++++|+-+|. ++|.||.|-.|++-++.... ....+.+|..
T Consensus 67 -~~f~~~s~~~tv~~y~fps~~~~----~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a 139 (933)
T KOG1274|consen 67 -NHFLTGSEQNTVLRYKFPSGEED----TILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA 139 (933)
T ss_pred -cceEEeeccceEEEeeCCCCCcc----ceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccc-hheeecccCC
Confidence 28999999999999999776542 22444567899999999998 99999999999999998875 6778899999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--------CCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--------HKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--------h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+|.++.|+|.+ .+||+.+-||.|+|||+..+. ...++.+ ....++.++|+|++ ..|+..+.|+.|+
T Consensus 140 pVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 140 PVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGI----LSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVK 213 (933)
T ss_pred ceeeeeEcCCC-CEEEEEecCceEEEEEcccch----hhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEE
Confidence 99999999999 999999999999999999876 3333322 14567889999976 6677777899999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeeccCC
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQS 472 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~~~ 472 (479)
+|+....... ..+.--+ .+..+..++|+|+|.++.+++-++.|.||+...+..
T Consensus 214 vy~r~~we~~---------------------f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 214 VYSRKGWELQ---------------------FKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred EEccCCceeh---------------------eeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence 9998876321 0111111 123499999999997555444444599999986544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=171.32 Aligned_cols=216 Identities=19% Similarity=0.358 Sum_probs=170.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.|-+.|+||.|.|++.+++ + -.+..|.+|++........ .-+...-.+|....++-+|+|...
T Consensus 121 eavg~i~cvew~Pns~kla-s-m~dn~i~l~~l~ess~~va---------------ev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLA-S-MDDNNIVLWSLDESSKIVA---------------EVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred HHhCceeeEEEcCCCCeeE-E-eccCceEEEEcccCcchhe---------------eecccccccccceecccccCCCCc
Confidence 5667999999999885544 4 3488999999987422110 000011113566788889999655
Q ss_pred C-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 247 G-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 247 ~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
+ .+++. .|+++..||+++..... ..-.+|...|.++.|+|+-..+|++|+.||.|+|||+|..+.++..+..|..
T Consensus 184 gnqv~tt-~d~tl~~~D~RT~~~~~---sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH 259 (370)
T KOG1007|consen 184 GNQVATT-SDSTLQFWDLRTMKKNN---SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH 259 (370)
T ss_pred cceEEEe-CCCcEEEEEccchhhhc---chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence 5 55554 48999999999765432 3356788899999999999999999999999999999999889999999999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------CceEEEeecCCCCeEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-------------------------DSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-------------------------~~~~~~~~~h~~~I~~v~~s 380 (479)
.|.++.|+|....+|++|+.|..|.+|-....... ...+.++..|...|++++|+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 99999999998899999999999999976543311 12455788899999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..++.+||+-|.||++.|=.+..
T Consensus 340 sadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cCCCeeEEEeccCceEEeecCCh
Confidence 99999999999999999866543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=188.38 Aligned_cols=257 Identities=21% Similarity=0.259 Sum_probs=178.7
Q ss_pred EEEec--CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 175 IRAMS--QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 175 v~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
..|++ ...++||.+.++|.|.++|.....-.+ ....+..+..|...|+.+.|.| ++.+|+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wap-ge~~lVsa 118 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAP-GESLLVSA 118 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCC-CceeEEEc
Confidence 44443 446899999999999999988732221 1233456678999999999999 65699999
Q ss_pred eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----------------
Q 039302 253 DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----------------- 315 (479)
Q Consensus 253 ~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----------------- 315 (479)
+.|.+|++||+.+..... ...+.+|.+.|.+++|.|.+..+|++|+.||.|.|||+|....
T Consensus 119 sGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 999999999998865533 2358899999999999999999999999999999999985420
Q ss_pred --e-------eeEEecCCCCEEE---EEEcCCCCcEEEEEeC-CCeEEEEeCCCCCCCC--ce--EEEeecC---CCCeE
Q 039302 316 --A-------LMSFKAHNADVNV---ISWNRLASCLLASGSD-DGTFSIHDLRLLKGGD--SV--VAHFEYH---KHPVT 375 (479)
Q Consensus 316 --~-------~~~~~~h~~~v~~---l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~~~--~~--~~~~~~h---~~~I~ 375 (479)
+ .....++...|.+ +-+..+. ..||+++. |+.|+|||||...... .+ +..+..| ...++
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 0 1111334444444 4444555 67787777 9999999999875321 12 2233334 34577
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
++.....+ .+|.+.+.|+.|++|++..... .|..+++.+....--..-..+|++. .++
T Consensus 276 nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~--------------------sP~~~~sg~~~~sf~vks~lSpd~~-~l~ 333 (720)
T KOG0321|consen 276 NLILDSSG-TYLFASCTDNSIYFYNMRSLSI--------------------SPVAEFSGKLNSSFYVKSELSPDDC-SLL 333 (720)
T ss_pred EEEecCCC-CeEEEEecCCcEEEEeccccCc--------------------CchhhccCcccceeeeeeecCCCCc-eEe
Confidence 88877755 5666666699999999998742 2223333332111122234567774 667
Q ss_pred EEcCCC-ceEEeeeccCC
Q 039302 456 STAADG-FNILMPSNIQS 472 (479)
Q Consensus 456 s~~~dg-i~iw~~~~~~~ 472 (479)
|++.+. ..+|.+.+.+.
T Consensus 334 SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred ccCCCcceeeeeecCccC
Confidence 777666 99999887643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=186.94 Aligned_cols=255 Identities=18% Similarity=0.298 Sum_probs=183.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|++.|.+|...|.| ..||+|+.||+|+||.+.+ +.++.++. ..+.|.|++|+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~T---------------------gRcvr~~~-~d~~I~~vaw~ 450 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIAT---------------------GRCVRTVQ-FDSEIRSVAWN 450 (733)
T ss_pred eeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeec---------------------ceEEEEEe-ecceeEEEEec
Confidence 5678999999999999988 8999999999999999988 56666554 23467777777
Q ss_pred CCCCCeEEEEeCCCeEEEEec-----------------------------------------------------------
Q 039302 243 PVAPGRLVSGDCNSCIHLWEP----------------------------------------------------------- 263 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~----------------------------------------------------------- 263 (479)
|.+..-++.......+.|-+.
T Consensus 451 P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH 530 (733)
T KOG0650|consen 451 PLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH 530 (733)
T ss_pred CCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee
Confidence 766543333333333433332
Q ss_pred -----------------------CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 264 -----------------------ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 264 -----------------------~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
..... +.+|....+.|.++.|+|... +|++++ -..|+|||+.... .+..+
T Consensus 531 rkGDYlatV~~~~~~~~VliHQLSK~~s----Q~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqe-lvKkL 603 (733)
T KOG0650|consen 531 RKGDYLATVMPDSGNKSVLIHQLSKRKS----QSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQE-LVKKL 603 (733)
T ss_pred cCCceEEEeccCCCcceEEEEecccccc----cCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHH-HHHHH
Confidence 11111 122323345566777777766 444444 4568888887643 55555
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
......|..++.+|.| .-|+.|+.|+.+..||+..... +..+++.|...+++|+|++.- .+||+|+.||++.|+-
T Consensus 604 ~tg~kwiS~msihp~G-Dnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH 678 (733)
T ss_pred hcCCeeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence 5566789999999999 6677899999999999988766 889999999999999999965 8999999999999987
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC--CeeeEEEeCCCCcEEEEEcCCCceEE
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK--DLKELHWHTQVPGMIVSTAADGFNIL 465 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~--~V~~v~w~p~~~~ll~s~~~dgi~iw 465 (479)
-....+- ...+.-+|...+..|.-.. .|.++.|||..++++.+++++.|++|
T Consensus 679 g~VY~Dl-------------~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 679 GMVYNDL-------------LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeehhh-------------hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6654321 1122345666666665332 48999999999987777776668887
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=183.02 Aligned_cols=222 Identities=20% Similarity=0.300 Sum_probs=182.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.+|+++.++ .++++|+..+.|+|||+.. ......+++|...|+++.++-... +|
T Consensus 83 ~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~---------------------kl~hr~lkdh~stvt~v~YN~~De-yi 136 (673)
T KOG4378|consen 83 FCVACASQS----LYEISGGQSGCVKIWDLRA---------------------KLIHRFLKDHQSTVTYVDYNNTDE-YI 136 (673)
T ss_pred HHHhhhhcc----eeeeccCcCceeeehhhHH---------------------HHHhhhccCCcceeEEEEecCCcc-ee
Confidence 344444444 6888999999999999986 455667889999999999999988 99
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
|+++..|.|.|..+.++... .+|... ...|.-+.|+|..+.+|.+++.+|.|.+||+............|..+..
T Consensus 137 Asvs~gGdiiih~~~t~~~t----t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKT----TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR 212 (673)
T ss_pred EEeccCCcEEEEecccCccc----cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence 99999999999999876542 333322 4567799999999999999999999999999987644444588999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChH
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEE 408 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~ 408 (479)
.|+|+|.++.+|++.+.|..|.+||++... ....+.. ..|.++|+|.+++ .+|++|+..|.|..||++..+
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~----s~~~l~y-~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k--- 283 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQA----STDRLTY-SHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK--- 283 (673)
T ss_pred cceecCCccceEEEecccceEEEeeccccc----ccceeee-cCCcceeeecCCc-eEEEeecCCceEEEEecccCC---
Confidence 999999999999999999999999999776 4555543 6689999999955 999999999999999999874
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.|...+-.|. ..|++++|-|.-
T Consensus 284 ------------------~Pv~v~sah~--~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 ------------------APVAVRSAHD--ASVTRVAFQPSP 305 (673)
T ss_pred ------------------CCceEeeecc--cceeEEEeeecc
Confidence 3334444454 679999998863
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=175.21 Aligned_cols=259 Identities=14% Similarity=0.176 Sum_probs=190.9
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-Cce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v 236 (479)
+|.+ ..+.--..+|.+++|.|+|...+++++.....+.||+.+. ....+....++. ..+
T Consensus 247 N~~l-qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-------------------k~~k~~~~~g~e~~~~ 306 (514)
T KOG2055|consen 247 NPKL-QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-------------------KVTKLKPPYGVEEKSM 306 (514)
T ss_pred Chhh-eeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-------------------ccccccCCCCcccchh
Confidence 4544 3344456799999999999768888899999999999773 123333444444 356
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.....+++++ +|+..+..|.|+|....++... ..+ .-.+.|.+++|+.+++ .|++++.+|.|.+||++... +
T Consensus 307 e~FeVShd~~-fia~~G~~G~I~lLhakT~eli----~s~-KieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~-~ 378 (514)
T KOG2055|consen 307 ERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELI----TSF-KIEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQNS-C 378 (514)
T ss_pred heeEecCCCC-eEEEcccCceEEeehhhhhhhh----hee-eeccEEeeEEEecCCc-EEEEEcCCceEEEEecCCcc-e
Confidence 6778899998 9999999999999988775431 122 2367899999999998 77777779999999999984 6
Q ss_pred eeEEecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-
Q 039302 317 LMSFKAH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA- 392 (479)
Q Consensus 317 ~~~~~~h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~- 392 (479)
+..+... .-.-++++.++++ .+||+|++.|.|.|||..+... ...|+..+..-...|++++|+|+. .+||.+|.
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~ 456 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRV 456 (514)
T ss_pred EEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhc
Confidence 6666422 2234677778888 8999999999999999764321 134788888788899999999955 88888775
Q ss_pred -CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 393 -DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 393 -Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++.+++-.+..... -.+.|+.--. -..|++++|+|.+ +++|.|...| +.+|++.
T Consensus 457 ~knalrLVHvPS~TV-----------------FsNfP~~n~~----vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCTV-----------------FSNFPTSNTK----VGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEeccceee-----------------eccCCCCCCc----ccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence 77888887765421 1133332111 1249999999998 4777777777 9999975
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=173.77 Aligned_cols=259 Identities=17% Similarity=0.296 Sum_probs=190.1
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC-CCCeEEEEeCCCeEEEE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV-APGRLVSGDCNSCIHLW 261 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~l~sg~~dg~I~lw 261 (479)
..+|++.++|.|++||..+ ++.+..|+++...++.++|... +...+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~t---------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccc---------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 5788889999999999987 6778889999999999999875 55589999999999999
Q ss_pred ecCCCCccccCCCCcccCC-CcEEEEEECCCCCcEEEEEe----CCCcEEEEEcCCCCceeeE-EecCCCCEEEEEEcCC
Q 039302 262 EPASDATWNVDPNPFIGHA-ASVEDLQWSPTESDVFASCS----VDGNIAIWDTRVGKSALMS-FKAHNADVNVISWNRL 335 (479)
Q Consensus 262 d~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s----~dg~I~iwD~~~~~~~~~~-~~~h~~~v~~l~~~p~ 335 (479)
|++....... ..+..+. .+..+++.+-.+. ++++|. .+-.|.+||+|..++++.. ...|...|++++|+|.
T Consensus 100 D~Rs~~e~a~--~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 100 DIRSQAESAR--ISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred Eeecchhhhh--eeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 9988655332 3344554 4666777665565 777775 3678999999998764444 4789999999999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHH----
Q 039302 336 ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEA---- 411 (479)
Q Consensus 336 ~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~---- 411 (479)
.+++|++||.||.|.|||+........++.++ .|...|.++.|....-..|.+-+...+..+|++....+.....
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 99999999999999999998775433444444 4788899999997554578999999999999998776322110
Q ss_pred ---HHhh----------h----c-----ccc-----------cCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEE
Q 039302 412 ---EFKA----------K----T-----REQ-----------VNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVST 457 (479)
Q Consensus 412 ---~~~~----------~----~-----~~~-----------~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~ 457 (479)
.... . . ... .......-..+...++|+. -|+++.|.-.+ .++.+|
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TG 334 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTG 334 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeecc
Confidence 0000 0 0 000 0011112222333344455 48888888665 599999
Q ss_pred cCCC-ceEEee
Q 039302 458 AADG-FNILMP 467 (479)
Q Consensus 458 ~~dg-i~iw~~ 467 (479)
|+|| +.+|+.
T Consensus 335 GEDG~l~~Wk~ 345 (376)
T KOG1188|consen 335 GEDGLLQAWKV 345 (376)
T ss_pred CCCceEEEEec
Confidence 9999 999994
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=166.61 Aligned_cols=268 Identities=18% Similarity=0.256 Sum_probs=195.3
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.|.. .+|++|++.| .+||.|+.+|.|.|||+.+ ......+.+|..+|.+++||++|.
T Consensus 22 d~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T---------------------~~iar~lsaH~~pi~sl~WS~dgr 78 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT---------------------FRIARMLSAHVRPITSLCWSRDGR 78 (405)
T ss_pred cCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc---------------------cchhhhhhccccceeEEEecCCCC
Confidence 3444 8999999999 8999999999999999998 556678899999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC---
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH--- 323 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h--- 323 (479)
.|+|++.|..|.+||+..+... . -....++|..++|+|...+.++++-.+..-.+-++..+...+......
T Consensus 79 -~LltsS~D~si~lwDl~~gs~l----~-rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 79 -KLLTSSRDWSIKLWDLLKGSPL----K-RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred -EeeeecCCceeEEEeccCCCce----e-EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence 9999999999999999887542 1 123468999999999988888888777777777776543222211111
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
+....+..|.+.| .+|++|...|.+.++|..+.+ ++..++--. ..|.+|.++..+ ..|+.-+.|..|+.|+++
T Consensus 153 n~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e----~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 153 NSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLE----CVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ccccccccccCCC-CEEEEecCcceEEEEecchhe----eeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehh
Confidence 1112233588888 999999999999999999998 788888766 789999998854 999999999999999988
Q ss_pred CCC------ChHHHHHH---hhhcc----cccCC----------------CCCCCCceEEeecCCC--CeeeEEEeCCCC
Q 039302 403 LEK------DEEEEAEF---KAKTR----EQVNA----------------PEDLPPQLLFIHQGQK--DLKELHWHTQVP 451 (479)
Q Consensus 403 ~~~------~~~~~~~~---~~~~~----~~~~~----------------~~~~p~~l~~~h~g~~--~V~~v~w~p~~~ 451 (479)
... ..+....+ -++.+ ..... -+.....|+.+..|.+ ...++.|||-.+
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP 306 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence 321 11211221 11110 00000 0112223333333333 488999999987
Q ss_pred cEEEEEcCCCceEEeeecc
Q 039302 452 GMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 452 ~ll~s~~~dgi~iw~~~~~ 470 (479)
+++|-+.+.+.||....+
T Consensus 307 -~i~si~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 307 -IIASIASGVVYIWAVVQV 324 (405)
T ss_pred -eeeeccCCceEEEEeecc
Confidence 788887777999977543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-20 Score=178.26 Aligned_cols=279 Identities=17% Similarity=0.231 Sum_probs=199.9
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccc------ccccc-cc---------------------cC--
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNA------LAESE-TV---------------------AG-- 214 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~------~~~~~-~~---------------------~~-- 214 (479)
+.||...|+++.|+|.+ ..|.++|.|.++.||.-.....- +...+ .. ..
T Consensus 263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 46999999999999999 45667799999999987664100 00000 00 00
Q ss_pred -CCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC--------------------------
Q 039302 215 -HGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA-------------------------- 267 (479)
Q Consensus 215 -~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~-------------------------- 267 (479)
.+........+.....||.+.|.+++|.|.|. +|++.+.|.+-+||-.-..+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 00011112344555679999999999999998 99999999888886432000
Q ss_pred ---------------------------------------------------c--c-------------------------
Q 039302 268 ---------------------------------------------------T--W------------------------- 269 (479)
Q Consensus 268 ---------------------------------------------------~--~------------------------- 269 (479)
+ .
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0 0
Q ss_pred --------------ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 270 --------------NVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 270 --------------~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
-.....+-||...|.+++.+|+++ ++||++.. ..|++|++.+-. ....+..|+-.|+.|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~-~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWL-QVQELEGHSLTVTRL 578 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchh-hhheecccceEEEEE
Confidence 000111237889999999999998 99998764 359999998875 556789999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
+|+|++ .+|++.+.|.++.+|...............+.|+.-|++..|+|+. .+|+|+|.|.+|+||......+..
T Consensus 579 ~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~-- 654 (764)
T KOG1063|consen 579 AFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKY-- 654 (764)
T ss_pred EECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchhhh--
Confidence 999999 9999999999999999865543222334477899999999999965 889999999999999998773210
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC----CcEEEEEcCCC-ceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV----PGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~----~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+.-....+ ...|+.++|+|-. ..+++.|-..| |.+|+...
T Consensus 655 ----------------i~~~a~~~~--~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 655 ----------------ISRFACLKF--SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred ----------------hhhhchhcc--CCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 000011112 2579999998843 23778888888 99998663
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=161.58 Aligned_cols=252 Identities=17% Similarity=0.290 Sum_probs=183.5
Q ss_pred EecCCcceeEEEEecC------CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---c
Q 039302 165 KVAHQGCVNRIRAMSQ------NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---E 235 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~------~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~ 235 (479)
...-...|...+|.+. ...++|+.+.+.-|++||.-+.. .+.-.....|.. .
T Consensus 100 r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~-------------------lraSy~~ydh~de~ta 160 (406)
T KOG2919|consen 100 RYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGK-------------------LRASYRAYDHQDEYTA 160 (406)
T ss_pred EeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccc-------------------cccchhhhhhHHhhhh
Confidence 3344567888888741 13788888999999999988721 122222223444 4
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-cccC---CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-WNVD---PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-~~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
..+|+|+|+|. +|++|. ...|++||+...+. ..+- .....+..+-+.+++|+|.....++.|+....+-||.-.
T Consensus 161 AhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~ 238 (406)
T KOG2919|consen 161 AHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD 238 (406)
T ss_pred heeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence 56899999998 888877 67999999954333 2110 111234477899999999988799999999888888776
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCCCCCceEEEeecCCC-CeEEEEE--eCCCCCEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKGGDSVVAHFEYHKH-PVTSIEW--SPHEGSTL 387 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~-~I~~v~~--sp~~~~~l 387 (479)
... ++..+.+|.+.|+.++|.++| +.|.+|+. |-.|..||+|.... ++..+..|.. .-..|.| .|.+ .+|
T Consensus 239 ~~~-pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~---pv~~L~rhv~~TNQRI~FDld~~~-~~L 312 (406)
T KOG2919|consen 239 GRR-PLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRD---PVYALERHVGDTNQRILFDLDPKG-EIL 312 (406)
T ss_pred CCC-ceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccc---hhhhhhhhccCccceEEEecCCCC-cee
Confidence 654 788888999999999999999 67777765 67899999999876 8888888876 4445655 5644 999
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
++|+.||.|++||+....+. +..+..|. .-|+.|++||-.| ++++++.. ++|+.
T Consensus 313 asG~tdG~V~vwdlk~~gn~---------------------~sv~~~~s--d~vNgvslnP~mp-ilatssGq--r~f~~ 366 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNE---------------------VSVTGNYS--DTVNGVSLNPIMP-ILATSSGQ--RIFKY 366 (406)
T ss_pred eccCCCccEEEEecCCCCCc---------------------cccccccc--ccccceecCcccc-eeeeccCc--eeecC
Confidence 99999999999999885421 12222222 3599999999987 67776666 66655
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
.+
T Consensus 367 ~~ 368 (406)
T KOG2919|consen 367 PK 368 (406)
T ss_pred CC
Confidence 43
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=172.49 Aligned_cols=283 Identities=16% Similarity=0.266 Sum_probs=196.8
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 236 (479)
.|+...-+.+|.|+||+|.|+.++ .+||+|+.|..++||++....... ..+|+..... |...|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---------------~~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---------------TPKPIGVMEHPHRSNI 108 (609)
T ss_pred cchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---------------CCCCceeccCccccce
Confidence 445555678999999999999997 899999999999999997632211 2456655433 55799
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
+||+|...+. +|.+|..+++|.+.|+.+.+...+ ..-....+.|..+..+|..+ .|++.+.+|.|.+||+|....+
T Consensus 109 F~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V--~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 109 FSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYV--ANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred EEEEEccCCe-eEecCCCcceeEeeecccceeeee--ecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC
Confidence 9999999887 999999999999999988655321 11222345899999999976 9999999999999999987533
Q ss_pred eeE--EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------------
Q 039302 317 LMS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------- 360 (479)
Q Consensus 317 ~~~--~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------- 360 (479)
... .........++-|+|..+.+|++.+..+.+.+||+|.....
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 322 23445668899999999999999999999999999865431
Q ss_pred CceEEEeecCC------------------CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccC
Q 039302 361 DSVVAHFEYHK------------------HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVN 422 (479)
Q Consensus 361 ~~~~~~~~~h~------------------~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 422 (479)
..+-.-+..|. ..|.+++|.- .+.+++|+.+-.|++|.+....+.....+ . ..
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~-I------G~ 335 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQ-I------GH 335 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccc-c------Cc
Confidence 00000011111 1244555553 36699999999999999987643211000 0 00
Q ss_pred CCCCCCC-----ceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 423 APEDLPP-----QLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 423 ~~~~~p~-----~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..+..|. ..+.+..||. -++.|.|+|.. ++|+|.+-.. |+||....+
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCc-ceEeccchhhheeccccccC
Confidence 0111121 1223334454 58999999988 5777777665 777766543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=163.82 Aligned_cols=220 Identities=20% Similarity=0.325 Sum_probs=163.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccccccc------cccCCCC--------Ccc----ccCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NALAESE------TVAGHGA--------PQV----LNQS 224 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~------~~~~~~~--------~~~----~~~~ 224 (479)
+...|.+.|.+++...+| .++ +|+.|..|..||-.-.. ...+.+. ..+.... ... .+..
T Consensus 282 ~~~aH~ggv~~L~~lr~G-tll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLRDG-TLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred EeeecCCceEEEEEecCc-cEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 334999999999999999 555 59999999999932211 1111111 1111100 000 1223
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 225 ~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
...+..+|..+.+.++.+|..+ +|+|++.|+.++||+ ...-.|. .--..++.|+.|+|.+ .+|.|+..|.
T Consensus 360 f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~~k~~wt------~~~~d~~~~~~fhpsg--~va~Gt~~G~ 429 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-DHKLEWT------KIIEDPAECADFHPSG--VVAVGTATGR 429 (626)
T ss_pred ceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-CCceeEE------EEecCceeEeeccCcc--eEEEeeccce
Confidence 3345578999999999999998 999999999999999 2222222 1124689999999998 7999999999
Q ss_pred EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 305 IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
..+.|+.+. .+.++...+.++++++|+|+| .+||.|+.|+.|+||-+..... .....-+.|..+|+.+.|++++
T Consensus 430 w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~--~y~r~~k~~gs~ithLDwS~Ds- 503 (626)
T KOG2106|consen 430 WFVLDTETQ--DLVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGR--KYSRVGKCSGSPITHLDWSSDS- 503 (626)
T ss_pred EEEEecccc--eeEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCc--EEEEeeeecCceeEEeeecCCC-
Confidence 999999985 344555458999999999999 9999999999999999876653 1222223355899999999965
Q ss_pred CEEEEEeCCCcEEEEEC
Q 039302 385 STLAVSSADNQLTIWDL 401 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl 401 (479)
++|.+-+.|-.|..|.-
T Consensus 504 ~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 504 QFLVSNSGDYEILYWKP 520 (626)
T ss_pred ceEEeccCceEEEEEcc
Confidence 99999999999999943
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=172.93 Aligned_cols=244 Identities=17% Similarity=0.284 Sum_probs=186.8
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
++.++|...+.-.+|+.+.|..|++|.-..... ....+....+. .-+|++...... ++++
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~-----------------~Vp~~~k~~gd--~~~Cv~~~s~S~-y~~s 96 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP-----------------EVPRVRKLTGD--NAFCVACASQSL-YEIS 96 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCC-----------------ccceeeccccc--hHHHHhhhhcce-eeec
Confidence 899999987744556667788899998766210 01122222232 445666555555 9999
Q ss_pred EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CCCEEEE
Q 039302 252 GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NADVNVI 330 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~~v~~l 330 (479)
|+..+.|+|||++.. . ..+.+.+|++.|+++.++..+. ++|+++..|-|.|..+.++. ....+... ...|.-+
T Consensus 97 gG~~~~Vkiwdl~~k-l---~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK-L---IHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLL 170 (673)
T ss_pred cCcCceeeehhhHHH-H---HhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCc-cccceecCCCCeEEEe
Confidence 999999999999742 2 2467889999999999999888 99999999999999999875 33444333 3456689
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
.|+|....+|.+++++|.|.+||+....+ ...-...|..|...|+|+|.++.+|++.|.|..|.+||++....
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s---- 243 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS---- 243 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc----
Confidence 99999888999999999999999988773 33445679999999999999999999999999999999986531
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+.+.| +.+.|+|.++|. +|+.|...| |..|+++..
T Consensus 244 -----------------~~~l~y~~----Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 244 -----------------TDRLTYSH----PLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -----------------cceeeecC----CcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 22444444 589999999996 555555555 999998765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=169.20 Aligned_cols=214 Identities=18% Similarity=0.286 Sum_probs=172.4
Q ss_pred CceeEEEEecC-CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 158 TPILQLRKVAH-QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H-~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
.+.++..+.++ .+.|-.++|++.+ +|+ +.+.+|.|.-||+.+ .+++..+....+.|
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e~~-RLF-S~g~sg~i~EwDl~~---------------------lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAEGG-RLF-SSGLSGSITEWDLHT---------------------LKQKYNIDSNGGAI 113 (691)
T ss_pred CceeeEEEecCCCCceeeEEEccCC-eEE-eecCCceEEEEeccc---------------------CceeEEecCCCcce
Confidence 34444444444 4689999999766 455 668899999999998 78888888888999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++++.+|.+. .++.|+.||.+..++...+.... ...+...++.|.++.|+|++. .+++|+.||.|++||...+...
T Consensus 114 Wsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~--~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~ 189 (691)
T KOG2048|consen 114 WSIAINPENT-ILAIGCDDGVLYDFSIGPDKITY--KRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTL 189 (691)
T ss_pred eEEEeCCccc-eEEeecCCceEEEEecCCceEEE--EeecccccceEEEEEecCCcc-EEEecccCceEEEEEcCCCceE
Confidence 9999999998 99999999988888776543321 244555679999999999998 8999999999999999988632
Q ss_pred ee-E-----Ee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 317 LM-S-----FK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 317 ~~-~-----~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.. + +. ....-|.++.|-.++ .|++|..-|+|++||-..+. .+..+..|.+.|.+++.++++ .++.+
T Consensus 190 ~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT----LiqS~~~h~adVl~Lav~~~~-d~vfs 262 (691)
T KOG2048|consen 190 HIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT----LIQSHSCHDADVLALAVADNE-DRVFS 262 (691)
T ss_pred EEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc----hhhhhhhhhcceeEEEEcCCC-CeEEE
Confidence 21 1 11 123346777777655 89999999999999999988 889999999999999999965 89999
Q ss_pred EeCCCcEEEEECCCCC
Q 039302 390 SSADNQLTIWDLSLEK 405 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~ 405 (479)
+|.|+.|..|.+....
T Consensus 263 aGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNK 278 (691)
T ss_pred ccCCCceEEEEecCCc
Confidence 9999999999887764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=179.14 Aligned_cols=228 Identities=18% Similarity=0.285 Sum_probs=179.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
|...|.+++... ..|++|+.+++|.+|.+.. ...-..+....-++.+++++.+|.
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps---------------------~~~~~iL~Rftlp~r~~~v~g~g~- 109 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPS---------------------GEEDTILARFTLPIRDLAVSGSGK- 109 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCC---------------------CCccceeeeeeccceEEEEecCCc-
Confidence 667777777654 4677899999999999987 333333444466899999999998
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK------ 321 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~------ 321 (479)
.+|.|+.|-.|++-++.+... ...+.+|.++|.+|.|+|++. +||+.+.||.|+|||+.++. +..++.
T Consensus 110 ~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n 183 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDN 183 (933)
T ss_pred EEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccch-hhhhcccCCccc
Confidence 999999999999999987655 356889999999999999999 99999999999999999874 222221
Q ss_pred -c-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 322 -A-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 322 -~-h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
. ....++.++|+|++ ..||..+.|+.|++|+..... +...+.. |...+..++|+|+ |.+||+++.||.|.
T Consensus 184 ~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we----~~f~Lr~~~~ss~~~~~~wsPn-G~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 184 EFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWE----LQFKLRDKLSSSKFSDLQWSPN-GKYIAASTLDGQIL 257 (933)
T ss_pred cccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCce----eheeecccccccceEEEEEcCC-CcEEeeeccCCcEE
Confidence 1 14567889999998 456666778999999999887 4555543 4555999999996 59999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
|||..+.. .|.....|.+++|.|+.+.+-+....+
T Consensus 258 vWnv~t~~----------------------------~~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 258 VWNVDTHE----------------------------RHEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred EEecccch----------------------------hccccceeEEEecCCCCCeeEEEeecc
Confidence 99998631 144445799999999987655554444
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=162.66 Aligned_cols=216 Identities=19% Similarity=0.299 Sum_probs=162.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe---cCCCCce
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF---GGHKDEG 236 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v 236 (479)
.+...+++|-+.||.|+++|..+++++++|.|..|++|++++ ..++..| .||.++|
T Consensus 126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~---------------------~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT---------------------DVCVAVFGGVEGHRDEV 184 (385)
T ss_pred hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC---------------------CeEEEEecccccccCcE
Confidence 444578999999999999999999999999999999999998 5666665 4699999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc------------------ccCCC------CcccCCCcEEEEEECCCC
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW------------------NVDPN------PFIGHAASVEDLQWSPTE 292 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~------------------~~~~~------~~~~h~~~V~~l~~sp~~ 292 (479)
.+++|++++. +|+||+.|.+|++|++.....+ ..... ...-|...|-|+.|- |
T Consensus 185 LSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 185 LSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 9999999998 9999999999999999742110 00000 123477788888887 4
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCc-------------eeeEEecCCCCEEEE--EEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 293 SDVFASCSVDGNIAIWDTRVGKS-------------ALMSFKAHNADVNVI--SWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 293 ~~~l~s~s~dg~I~iwD~~~~~~-------------~~~~~~~h~~~v~~l--~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
. ++++-|.++.|..|-.-.... .+..+.-....|.-| +|+|-+ .+||.|...|.|.+|||++.
T Consensus 262 d-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 262 D-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred h-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCC
Confidence 4 899999999999998721110 122233334455544 456767 89999999999999999998
Q ss_pred CCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 358 KGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 358 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.+......+-......|...+|+.++ .+|+..+.|++|.-||--
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 75222222222235679999999854 899999999999999853
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=154.51 Aligned_cols=233 Identities=15% Similarity=0.293 Sum_probs=173.9
Q ss_pred CceeEEEEecCCcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
+-.+......|.+.|.+|.|.+-. ..++|+++.|++|.||.-.... ... .........++......|
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~--~~~----------~~~~Wv~~ttl~DsrssV 115 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS--EEA----------HGRRWVRRTTLVDSRSSV 115 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc--ccc----------ccceeEEEEEeecCCcce
Confidence 444556788999999999997642 5899999999999999864210 000 001244556777778899
Q ss_pred EEEEeCCCCCC-eEEEEeCCCeEEEEecCCCC---cccc------CCCCcccCCCcEEEEEECCCC--CcEEEEEeCC--
Q 039302 237 YAIDWNPVAPG-RLVSGDCNSCIHLWEPASDA---TWNV------DPNPFIGHAASVEDLQWSPTE--SDVFASCSVD-- 302 (479)
Q Consensus 237 ~~l~~s~~~~~-~l~sg~~dg~I~lwd~~~~~---~~~~------~~~~~~~h~~~V~~l~~sp~~--~~~l~s~s~d-- 302 (479)
+.+.|.|...| .||+++.||.++||+.-... .|.+ ...+...+..+..|+.|+|.. ..+||.|+.+
T Consensus 116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a 195 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA 195 (361)
T ss_pred eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence 99999998766 79999999999999875432 2221 112233567788999999753 2378888866
Q ss_pred ---CcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCCC--------------
Q 039302 303 ---GNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLAS---CLLASGSDDGTFSIHDLRLLKG-------------- 359 (479)
Q Consensus 303 ---g~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~~---~~l~sgs~dg~i~iwDlr~~~~-------------- 359 (479)
+.+.||....... .+..+..|..+|+.|+|.|+-+ .+||+++.|| |+||.++....
T Consensus 196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~ 274 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMT 274 (361)
T ss_pred ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcc
Confidence 5789998766532 3445678999999999999743 5899999999 99999984221
Q ss_pred --CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 360 --GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 360 --~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.-..+..+..|.+.|+.+.|+-.+ .+|++.|.||+|++|.....
T Consensus 275 ~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 275 DLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence 013456678899999999999865 99999999999999987654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=165.58 Aligned_cols=217 Identities=17% Similarity=0.272 Sum_probs=171.0
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|+++|..+.|+|.+.+.||+||+|.+|.||++........ ...|+..+.||...|.-++|+|.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------------ltepvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------------LTEPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC--------------cccceEEEeecceeEEEEeeccc
Confidence 3599999999999999999999999999999999987432211 25788899999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..+.|+|++.|.+|.+||+.++.... .+. |...|.++.|+.+|. +|++.+.|+.|||||.|++. .+..-.+|.
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali----~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~-~v~e~~~he 215 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALI----TLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGT-VVSEGVAHE 215 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceee----ecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCc-Eeeeccccc
Confidence 99899999999999999999876533 233 999999999999999 99999999999999999986 555555665
Q ss_pred C-CEEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 325 A-DVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 325 ~-~v~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
+ .-..+.|-.++ .++-||- .+..+-+||..+...+ -....+.. +..|.---|.|+..-+.++|-.|+.|+.|.
T Consensus 216 G~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 216 GAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEP-IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred CCCcceeEEeccC-ceeeeccccccccceeccCcccccCc-ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 4 34566777777 5555543 3568999999988762 12333443 455666668886644455556699999999
Q ss_pred CCCCC
Q 039302 401 LSLEK 405 (479)
Q Consensus 401 l~~~~ 405 (479)
+....
T Consensus 293 it~d~ 297 (472)
T KOG0303|consen 293 ITNEP 297 (472)
T ss_pred ecCCC
Confidence 98763
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=154.52 Aligned_cols=249 Identities=19% Similarity=0.226 Sum_probs=191.9
Q ss_pred CCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCC
Q 039302 50 EGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNK 129 (479)
Q Consensus 50 ~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~ 129 (479)
+|.-..||-..-++.-.+.++-|-|.+-+.++.. ++.| .-++.|.++++..
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~------------~~~G-----~~dg~vr~~Dln~------------ 84 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAPLLDCAFADEST------------IVTG-----GLDGQVRRYDLNT------------ 84 (323)
T ss_pred cCcEEEEeccchhhhhheecCCceeeeeccCCce------------EEEe-----ccCceEEEEEecC------------
Confidence 5666777877778889999999999999998632 5555 4789999998831
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccccccc
Q 039302 130 PATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAES 209 (479)
Q Consensus 130 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 209 (479)
. -..++-.|..+|.||.+++.. ..+++||.|++|++||...
T Consensus 85 ----------------------------~--~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~-------- 125 (323)
T KOG1036|consen 85 ----------------------------G--NEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRN-------- 125 (323)
T ss_pred ----------------------------C--cceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccc--------
Confidence 0 012566899999999999866 6778999999999999885
Q ss_pred ccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC
Q 039302 210 ETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 289 (479)
.....++. ....|++++.+- . +|+.|..+..|.+||+++..... ...-..-+-.+.||++-
T Consensus 126 -------------~~~~~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 126 -------------KVVVGTFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALV 186 (323)
T ss_pred -------------cccccccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEe
Confidence 22233332 234899998764 3 89999999999999998765432 12223345678999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCC---ceeeEEecCCC---------CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGK---SALMSFKAHNA---------DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~---~~~~~~~~h~~---------~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
|++. -++++|.||.|.+=.+.... .....|+.|.. +||+|+|+|-. ..||||+.||.|.+||+.+.
T Consensus 187 pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 187 PNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch
Confidence 9777 78999999999887666541 13345666643 79999999987 89999999999999999988
Q ss_pred CCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 358 KGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 358 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
+ .+..+......|.+++|+-++ ..||+++.
T Consensus 265 K----rl~q~~~~~~SI~slsfs~dG-~~LAia~s 294 (323)
T KOG1036|consen 265 K----RLKQLAKYETSISSLSFSMDG-SLLAIASS 294 (323)
T ss_pred h----hhhhccCCCCceEEEEeccCC-CeEEEEec
Confidence 7 577777777889999999855 88888874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=169.11 Aligned_cols=237 Identities=17% Similarity=0.225 Sum_probs=181.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~ 247 (479)
+.+|.+++|+.+. +.||.+-.+|.|.||++.. ..-....+.++. ..|-+|+|++.+
T Consensus 25 Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~--------------------~w~~~~vi~g~~drsIE~L~W~e~~-- 81 (691)
T KOG2048|consen 25 PSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSN--------------------NWFLEPVIHGPEDRSIESLAWAEGG-- 81 (691)
T ss_pred ccceEEEEEeccC-CceeeeccCCcEEEEccCC--------------------CceeeEEEecCCCCceeeEEEccCC--
Confidence 5899999999988 6688889999999999988 244455666665 489999999544
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFKAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~~h~~~ 326 (479)
+|.|.+.+|.|.-||+.+.... ..+....+.|.+++.+|.+. .++.|+.||.+.++++....-. ...+....+.
T Consensus 82 RLFS~g~sg~i~EwDl~~lk~~----~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sR 156 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTLKQK----YNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSR 156 (691)
T ss_pred eEEeecCCceEEEEecccCcee----EEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccce
Confidence 8999999999999999886542 34556678999999999998 8999999997777777665311 1223445688
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-----ec---CCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-----EY---HKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-----~~---h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
|.+++|+|++ ..|++|+.||.|++||...+.. +... .. -..-|++|.|-. + ..|++|..-|+|.+
T Consensus 157 vLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t----~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 157 VLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQT----LHIITMQLDRLSKREPTIVWSVLFLR-D-STIASGDSAGTVTF 229 (691)
T ss_pred EEEEEecCCc-cEEEecccCceEEEEEcCCCce----EEEeeecccccccCCceEEEEEEEee-c-CcEEEecCCceEEE
Confidence 9999999999 8899999999999999998873 3311 11 223477888874 3 78999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEE
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNIL 465 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw 465 (479)
||...+. ++..|..| ..|.+++-.+++..++++|.+..+.-|
T Consensus 230 Wd~~~gT-------------------------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 230 WDSIFGT-------------------------LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred EcccCcc-------------------------hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 9998873 34444433 479999999998755555555534333
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-18 Score=158.71 Aligned_cols=240 Identities=17% Similarity=0.288 Sum_probs=184.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.-|.|++|.+++ . ++||.++|.|.||+... .+.......|.+.|++|....+| .|
T Consensus 247 k~Vl~v~F~eng-d-viTgDS~G~i~Iw~~~~---------------------~~~~k~~~aH~ggv~~L~~lr~G--tl 301 (626)
T KOG2106|consen 247 KFVLCVTFLENG-D-VITGDSGGNILIWSKGT---------------------NRISKQVHAHDGGVFSLCMLRDG--TL 301 (626)
T ss_pred eEEEEEEEcCCC-C-EEeecCCceEEEEeCCC---------------------ceEEeEeeecCCceEEEEEecCc--cE
Confidence 679999999999 3 55999999999999866 23333444899999999998887 68
Q ss_pred EEEeCCCeEEEEecCCCCc-----------ccc-------------------------CCCCcccCCCcEEEEEECCCCC
Q 039302 250 VSGDCNSCIHLWEPASDAT-----------WNV-------------------------DPNPFIGHAASVEDLQWSPTES 293 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~-----------~~~-------------------------~~~~~~~h~~~V~~l~~sp~~~ 293 (479)
+||+.|..|.+||-.-... ..+ ......+|......++.+|...
T Consensus 302 lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 302 LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 8899999999998321110 000 0011246888889999999988
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
.|++|+.|+.++||+ .. ++..+ ..-..++.|+.|+|.+ .+|.|+..|...+.|..+.. .+. +.....+
T Consensus 382 -q~~T~gqdk~v~lW~--~~-k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~----lv~-~~~d~~~ 449 (626)
T KOG2106|consen 382 -QLLTCGQDKHVRLWN--DH-KLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD----LVT-IHTDNEQ 449 (626)
T ss_pred -heeeccCcceEEEcc--CC-ceeEE-EEecCceeEeeccCcc--eEEEeeccceEEEEecccce----eEE-EEecCCc
Confidence 999999999999999 22 23332 3345678999999988 89999999999999999855 343 4444899
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
++.|+|+|++ .+||.|+.|+.|+||.++..... ...+-.|.| ..|+.+.|++++. +
T Consensus 450 ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~---------------------y~r~~k~~g-s~ithLDwS~Ds~-~ 505 (626)
T KOG2106|consen 450 LSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRK---------------------YSRVGKCSG-SPITHLDWSSDSQ-F 505 (626)
T ss_pred eEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcE---------------------EEEeeeecC-ceeEEeeecCCCc-e
Confidence 9999999965 99999999999999999876421 233445666 7899999999986 6
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
+.+-+.|- |..|++...
T Consensus 506 ~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKPSEC 523 (626)
T ss_pred EEeccCceEEEEEccccC
Confidence 77777666 888855433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=173.75 Aligned_cols=223 Identities=19% Similarity=0.384 Sum_probs=181.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+.+.+..|...|..+.|.|..+ .|++++.||++.+|+++..... .....+++.+|.+|.++|.|++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s-------------~~~~~epi~tfraH~gPVl~v~ 351 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKS-------------AEKDVEPILTFRAHEGPVLCVV 351 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCc-------------cccceeeeEEEecccCceEEEE
Confidence 3457889999999999999884 6779999999999999541110 1124689999999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCC------CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASD------ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
..+.+. .+++|+-||+|+.|++... ....+....+.||+..|+.+++|+... .|++|+.||++++|+.....
T Consensus 352 v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 352 VPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcC
Confidence 999998 9999999999999976522 112233466889999999999999877 79999999999999875432
Q ss_pred cee-------------------------------------------eEEe-------cCCCCEEEEEEcCCCCcEEEEEe
Q 039302 315 SAL-------------------------------------------MSFK-------AHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 315 ~~~-------------------------------------------~~~~-------~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
.+. ..+. .....++.+.++|.. .+.+++.
T Consensus 430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h 508 (577)
T KOG0642|consen 430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH 508 (577)
T ss_pred ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecc
Confidence 100 0000 011347788899988 8999999
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|+.|+++|..++. ++.....|...++++++.|++ .+|++++.|+.|++|.+....
T Consensus 509 ed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCCceecccccccc----cchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh
Confidence 99999999999998 899999999999999999965 999999999999999997654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=160.42 Aligned_cols=270 Identities=19% Similarity=0.283 Sum_probs=185.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+..|...||+|+|+|+| .++|+|+++|.|.+|......-.. ... ..............+.+|..+|+.+
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~--~d~---e~~~~ke~w~v~k~lr~h~~diydL 129 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFD--ADT---EADLNKEKWVVKKVLRGHRDDIYDL 129 (434)
T ss_pred EEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCcc--ccc---hhhhCccceEEEEEecccccchhhh
Confidence 3345688999999999999999 899999999999999877410000 000 0000011244556788999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--ee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--AL 317 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~ 317 (479)
+|+|++. ++++|+.|..+++||+..+.. ...+..|...|..++|.|-++ ++++-+.|...+++.+...+. .+
T Consensus 130 ~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 130 AWSPDSN-FLVSGSVDNSVRLWDVHAGQL----LAILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred hccCCCc-eeeeeeccceEEEEEecccee----Eeeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeee
Confidence 9999998 999999999999999988755 355788999999999999998 899999898777777654321 00
Q ss_pred e--EE---e-----------cCC----CCEEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCCCCCceEEEee
Q 039302 318 M--SF---K-----------AHN----ADVNVISWNRLASCLLASGSD---------DGTFSIHDLRLLKGGDSVVAHFE 368 (479)
Q Consensus 318 ~--~~---~-----------~h~----~~v~~l~~~p~~~~~l~sgs~---------dg~i~iwDlr~~~~~~~~~~~~~ 368 (479)
. .+ . -|. .-...++|+|+| .+|++.+. -++.++|+....+. |+..+.
T Consensus 204 ~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~r---P~~~lp 279 (434)
T KOG1009|consen 204 GLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR---PAARLP 279 (434)
T ss_pred eeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccC---ceeecC
Confidence 0 00 0 011 124568899999 77777532 12346676665554 777887
Q ss_pred cCCCCeEEEEEeCC-----------------CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce
Q 039302 369 YHKHPVTSIEWSPH-----------------EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL 431 (479)
Q Consensus 369 ~h~~~I~~v~~sp~-----------------~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 431 (479)
.-..++..+.|+|- ...++|.++ -+.|+|||...... -..+
T Consensus 280 ~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P---------------------~~~v 337 (434)
T KOG1009|consen 280 SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEP---------------------LAVV 337 (434)
T ss_pred CCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccc---------------------eEEE
Confidence 77777777777762 112455555 56799999876521 0122
Q ss_pred EEeecCCCCeeeEEEeCCCCcEEEEEcCCC---ceEEeeecc
Q 039302 432 LFIHQGQKDLKELHWHTQVPGMIVSTAADG---FNILMPSNI 470 (479)
Q Consensus 432 ~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg---i~iw~~~~~ 470 (479)
-.+|- ..|++++|++++..+ +.++.|| +.-|..+.+
T Consensus 338 ~nihy--~~iTDiaws~dg~~l-~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 338 DNIHY--SAITDIAWSDDGSVL-LVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeee--eeecceeecCCCcEE-EEeccCCceEEEEEcchhc
Confidence 23343 579999999999744 4455566 444444444
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=159.67 Aligned_cols=251 Identities=16% Similarity=0.268 Sum_probs=186.1
Q ss_pred CCcceeEEEEecC---CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 168 HQGCVNRIRAMSQ---NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 168 H~~~V~~v~~~p~---~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
|......++|+-+ +.-++|.|+.-|.|+|.|+.+ .+....+.+|...|+.+.+.|.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~---------------------~~~~~~~~ghG~sINeik~~p~ 146 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS---------------------GQCSKNYRGHGGSINEIKFHPD 146 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch---------------------hhhccceeccCccchhhhcCCC
Confidence 3344555566543 235777778999999999987 6777889999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---------
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--------- 315 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--------- 315 (479)
.+.++++|+.|..|++|++++... .....-+.+|...|.++.|++++. .|++|+.|.+|++|++....-
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~ 224 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSIT 224 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcc
Confidence 988999999999999999988654 333456789999999999999999 999999999999999984310
Q ss_pred -----------------ee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC----------CCceEEEe
Q 039302 316 -----------------AL-MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG----------GDSVVAHF 367 (479)
Q Consensus 316 -----------------~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~----------~~~~~~~~ 367 (479)
+. .+...|...|.|+.|-- .++++-|-++.|..|-.-.... ....+..+
T Consensus 225 ~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~ 301 (385)
T KOG1034|consen 225 YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEF 301 (385)
T ss_pred cCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEe
Confidence 00 02245777788888763 7899999999999998732211 12345556
Q ss_pred ecCCCCeEEEEE--eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-cCCCCeeeE
Q 039302 368 EYHKHPVTSIEW--SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-QGQKDLKEL 444 (479)
Q Consensus 368 ~~h~~~I~~v~~--sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~g~~~V~~v 444 (479)
......|+-|.| .|.. .+||.|...|.|.+|||+..... .+....| .+...|...
T Consensus 302 ~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~---------------------~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 302 DYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPP---------------------KCTTLTHSKSGSTVRQT 359 (385)
T ss_pred ccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCc---------------------cCceEEeccccceeeee
Confidence 666667776655 5644 89999999999999999987421 1222333 333469999
Q ss_pred EEeCCCCcEEEEEcCCCceEEeee
Q 039302 445 HWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 445 ~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|+.++..+++.+.+. .||+..
T Consensus 360 sfS~dgs~lv~vcdd~--~Vwrwd 381 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDG--TVWRWD 381 (385)
T ss_pred eecccCcEEEEEeCCC--cEEEEE
Confidence 9999997555555555 556543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=174.86 Aligned_cols=215 Identities=19% Similarity=0.256 Sum_probs=177.2
Q ss_pred EEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+|..+|.|+.|+... ..+||+++.|..|+|||+.. +..++.++.+|+..|+++.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r--------------------ny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR--------------------NYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------------------ccchhhhhcccccceeEEE
Confidence 3566899999999998743 58999999999999999988 4778899999999999999
Q ss_pred eCCCCCC-eEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 241 WNPVAPG-RLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 241 ~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|...+-+ ++++++.|..|.+--.+....-.. ......-....+.+++..|+.+ ++++++.|+.|+|||+..++ ...
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgK-q~k 632 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGK-QVK 632 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccc-eee
Confidence 9987732 899999998875533322111110 0011111234689999999999 99999999999999999986 455
Q ss_pred EE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 319 SF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 319 ~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
.| ..|.+....+...|.+ .+||+.+.|.++.++|.-++. ++..+.+|...|+.+.|.++. ..|++.+.||+
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE----cvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgC 706 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE----CVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGC 706 (1080)
T ss_pred eecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch----hhhhhcCcchheeeeeecccc-hhheeecCCce
Confidence 56 4567788899999999 999999999999999999998 899999999999999999977 89999999999
Q ss_pred EEEEECCCCC
Q 039302 396 LTIWDLSLEK 405 (479)
Q Consensus 396 I~iwdl~~~~ 405 (479)
|.||.+....
T Consensus 707 IFvW~lp~~m 716 (1080)
T KOG1408|consen 707 IFVWKLPLTM 716 (1080)
T ss_pred EEEEECchhH
Confidence 9999998753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=158.06 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=140.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+..+.|+|++..++++++.++.|++||+.. .+.+..+.. ...+.+++|+|++. +++
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~---------------------~~~~~~~~~-~~~~~~~~~~~dg~-~l~ 130 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIET---------------------RKVLAEIPV-GVEPEGMAVSPDGK-IVV 130 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCC---------------------CeEEeEeeC-CCCcceEEECCCCC-EEE
Confidence 3567899999966777777789999999986 334444432 23467899999998 888
Q ss_pred EEeCCC-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC-----
Q 039302 251 SGDCNS-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN----- 324 (479)
Q Consensus 251 sg~~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~----- 324 (479)
+++.++ .+.+||..+..... .. .....+..++|+|++..+++++..++.|++||+++.+ .+..+..+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~----~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVD----NV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHP 204 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEE----EE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeeccccccc
Confidence 888765 56778986643311 11 1223457899999998444566679999999999875 333332221
Q ss_pred --CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE-eCCCcEEEEEC
Q 039302 325 --ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS-SADNQLTIWDL 401 (479)
Q Consensus 325 --~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~-s~Dg~I~iwdl 401 (479)
.....++|+|++..++++.+.++.|.+||+++.+ .+..+ .+...+.+++|+|++ .+|+++ +.++.|.+||+
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----~~~~~-~~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----VLDYL-LVGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----EEEEE-EeCCCcceEEECCCC-CEEEEEcCCCCeEEEEEC
Confidence 1234688999995445555667789999998766 44444 345679999999976 666655 56999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
....
T Consensus 279 ~~~~ 282 (300)
T TIGR03866 279 AALK 282 (300)
T ss_pred CCCc
Confidence 9874
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-19 Score=161.15 Aligned_cols=213 Identities=20% Similarity=0.319 Sum_probs=164.9
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
-.+.||+++|..++|+|.+...||||+.|.+|.||.+..+..... ....+.+|...|--++|+|.-.++|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346799999999999999988999999999999999977544221 12457899999999999999999999999999
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC-eEEEEEeCC
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP-VTSIEWSPH 382 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~-I~~v~~sp~ 382 (479)
+|.||++.++. .+..+. |...|.+++|+.+| .+|++.+.|..|+|||.|.+. .+..-.+|.+. -..+-|-.+
T Consensus 155 ~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~----~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 155 TVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGT----VVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred eEEEEeccCCc-eeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCc----EeeecccccCCCcceeEEecc
Confidence 99999999996 555666 99999999999999 899999999999999999998 77777778763 344556654
Q ss_pred CCCEEEEEe---CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 383 EGSTLAVSS---ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 383 ~~~~las~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
+ .++.||- .+.++-+||-.....+ -.+........|.==-|.|+...+.+.|-.
T Consensus 228 g-~i~tTGfsr~seRq~aLwdp~nl~eP----------------------~~~~elDtSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 228 G-KIFTTGFSRMSERQIALWDPNNLEEP----------------------IALQELDTSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred C-ceeeeccccccccceeccCcccccCc----------------------ceeEEeccCCceEEeeecCCCCEEEEEecC
Confidence 4 5554443 3789999998876432 112222222356656677877655555555
Q ss_pred CC-ceEEeeec
Q 039302 460 DG-FNILMPSN 469 (479)
Q Consensus 460 dg-i~iw~~~~ 469 (479)
|+ |+-|.+.+
T Consensus 285 D~~IRYyEit~ 295 (472)
T KOG0303|consen 285 DSSIRYFEITN 295 (472)
T ss_pred CcceEEEEecC
Confidence 65 88777654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=159.45 Aligned_cols=251 Identities=13% Similarity=0.164 Sum_probs=188.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.+.|++|.|+|.. .++.+++.||+++||.+.... ...+..+.--..+|.+..|.|+|...
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~-------------------N~~lqS~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKV-------------------NPKLQSIHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCcc-------------------ChhheeeeeccCccceeeecCCCceE
Confidence 3789999999988 678889999999999998732 23444555556799999999999878
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++++....++.||+.+.+...+ .+..++ ...+.....+++++ +++..+..|.|.|.-..++. .+.+++ -.+.|
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~--~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e-li~s~K-ieG~v 347 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKL--KPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE-LITSFK-IEGVV 347 (514)
T ss_pred EEecccceEEEEeeccccccccc--cCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh-hhheee-eccEE
Confidence 99999999999999988655332 333444 35688889999998 99999999999999888875 455554 35679
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC-CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH-PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~-~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~ 406 (479)
..++|+.++ ..|++++.+|.|.+||++... +++.+.-..+ .-++++.++++ .+||+||..|.|.|||......
T Consensus 348 ~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~----~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 348 SDFTFSSDS-KELLASGGTGEVYVWNLRQNS----CLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred eeEEEecCC-cEEEEEcCCceEEEEecCCcc----eEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc
Confidence 999999988 677777778999999999987 7777764221 23677777855 8999999999999999876531
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEe-ecCCCCeeeEEEeCCCCcEEEEEcCCC---ceEEeeecc
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFI-HQGQKDLKELHWHTQVPGMIVSTAADG---FNILMPSNI 470 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~-h~g~~~V~~v~w~p~~~~ll~s~~~dg---i~iw~~~~~ 470 (479)
...|+.++. ..-...|++++|+|+.. +||.++... +++..+.+.
T Consensus 422 -------------------s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 422 -------------------STNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred -------------------cCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce
Confidence 111222222 22235799999999986 555444332 777776554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=151.66 Aligned_cols=259 Identities=16% Similarity=0.284 Sum_probs=179.4
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC-------CC
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN-------PV 244 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-------~~ 244 (479)
...++|+|+|..+| +-+.|..+++|++.............. ....+...+ .....|+...|- |.
T Consensus 52 ~kgckWSPDGSciL-~~sedn~l~~~nlP~dlys~~~~~~~~-------~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSCIL-SLSEDNCLNCWNLPFDLYSKKADGPLN-------FSKHLSYRY-QEGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCceEE-eecccCeeeEEecChhhcccCCCCccc-------cccceeEEe-ccCCEEEEEEeeeccccCCCc
Confidence 45689999996555 559999999999976433221111000 011122222 123478888886 44
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC---cEEEEEECCCCCcEEEEEeCCCcEEEEEc-CCCCc-eeeE
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA---SVEDLQWSPTESDVFASCSVDGNIAIWDT-RVGKS-ALMS 319 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~dg~I~iwD~-~~~~~-~~~~ 319 (479)
.. ++|+.+.+.-|++||.-+++... ....-.|.. ...+++|+|+|. .|++ +...+|++||+ |.+.. ++..
T Consensus 123 t~-l~a~ssr~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 123 TN-LFAVSSRDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cc-eeeeccccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchh
Confidence 44 89999999999999998865421 111112322 346899999999 5544 55889999999 65542 2222
Q ss_pred Ee-----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-C
Q 039302 320 FK-----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA-D 393 (479)
Q Consensus 320 ~~-----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~-D 393 (479)
.. +..+-|.+++|+|.....+|.|+....+-||.-.... ++..+.+|.+.|+.++|++++ +.|.+|+. |
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~----pl~llggh~gGvThL~~~edG-n~lfsGaRk~ 272 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR----PLQLLGGHGGGVTHLQWCEDG-NKLFSGARKD 272 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC----ceeeecccCCCeeeEEeccCc-CeecccccCC
Confidence 22 3366789999999997899999999999998877766 899999999999999999976 67777765 8
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
..|..||++....+. -.+..|.+.+ .=.-+...|.+. +|++++.+| |++|++....
T Consensus 273 dkIl~WDiR~~~~pv---------------------~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPV---------------------YALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CeEEEEeehhccchh---------------------hhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCC
Confidence 899999999876431 2233343311 112245567774 899999999 9999998853
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=170.34 Aligned_cols=233 Identities=19% Similarity=0.343 Sum_probs=175.2
Q ss_pred ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc--
Q 039302 192 GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW-- 269 (479)
Q Consensus 192 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~-- 269 (479)
+.+.||++.. ...|...+.. ..+|.|+.|+|..+.+||.|..+|.|.+||++.....
T Consensus 222 ~~~~vW~~~~--------------------p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKN--------------------PNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP 280 (555)
T ss_pred ceEEEEecCC--------------------CCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC
Confidence 4788999987 3566666653 5589999999999989999999999999999876552
Q ss_pred ccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceeeEE----e-------cCCCCEEEEEEcCCCC
Q 039302 270 NVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALMSF----K-------AHNADVNVISWNRLAS 337 (479)
Q Consensus 270 ~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~~~----~-------~h~~~v~~l~~~p~~~ 337 (479)
.........|..+|..+.|..+.. +-|+++|.||.|..|+++....++... . .....++++.|.+..+
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence 222233456899999999966433 258999999999999998764322221 1 1234689999999999
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCC----ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHH
Q 039302 338 CLLASGSDDGTFSIHDLRLLKGGD----SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 338 ~~l~sgs~dg~i~iwDlr~~~~~~----~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
+.++.|++.|.|.--......... .....+..|.++|+++.++|.....|++++ |-+|+||.......
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~------- 432 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS------- 432 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-------
Confidence 999999999998874444333211 235567779999999999999877888877 99999999874321
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
| ++.....-..|++++|+|..|.+++++..+| +.||++..
T Consensus 433 --------------P--l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 433 --------------P--LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred --------------c--chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 1 1111111134999999999999999999998 99999854
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=167.94 Aligned_cols=174 Identities=21% Similarity=0.280 Sum_probs=141.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~ 241 (479)
..+.||+|.|||+.|+.+| .+|++||+|-.+.|||.-. .+++. .-.||...|+++.|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~---------------------~KllhsI~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE---------------------YKLLHSISTGHTANIFSVKF 101 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchh---------------------cceeeeeecccccceeEEee
Confidence 4678999999999999999 7999999999999999876 34444 34689999999999
Q ss_pred CCCCCC-eEEEEeCCCeEEEEecCCCCc------cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 242 NPVAPG-RLVSGDCNSCIHLWEPASDAT------WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 242 s~~~~~-~l~sg~~dg~I~lwd~~~~~~------~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
-|...+ +++||..|..|+++|+...+. .......+..|...|..|+-.|.+++.|-+++.||+|+-+|+|...
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 997554 788999999999999975221 1222355778999999999999999999999999999999999864
Q ss_pred ceeeEE---------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 315 SALMSF---------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 315 ~~~~~~---------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
.+.... ...--...|+..+|..+.+||+|+.|-..++||.|...
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~l 234 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVL 234 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhc
Confidence 322221 12223567999999999999999999999999976543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=156.10 Aligned_cols=216 Identities=22% Similarity=0.340 Sum_probs=164.8
Q ss_pred EEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 240 (479)
..+.+|+..+|.++|... +++.+.+|+.||+|++||+... ...+...+..|. .+-.+++
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~-------------------~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ-------------------AESARISWTQQSGTPFICLD 124 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc-------------------hhhhheeccCCCCCcceEee
Confidence 356788999999999885 6789999999999999999884 234445566666 4777888
Q ss_pred eCCCCCCeEEEEe----CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-
Q 039302 241 WNPVAPGRLVSGD----CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS- 315 (479)
Q Consensus 241 ~s~~~~~~l~sg~----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~- 315 (479)
.+-.+. ++++|. .+-.|.+||++..+... ..-...|...|++|+|+|..+++|++||.||.|.|||+.....
T Consensus 125 ~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 125 LNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred ccCcCC-eEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 876665 777775 35689999998865522 2446789999999999999999999999999999999987632
Q ss_pred -eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------------
Q 039302 316 -ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------- 360 (479)
Q Consensus 316 -~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------- 360 (479)
.+.....|...|.++.|...+-..|.+-+..++..+|++..+...
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 444455677889999998877567888888899999988755421
Q ss_pred -----------------------CceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 361 -----------------------DSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 361 -----------------------~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
...+..+.+ |..-|+++.|.-.+ .++.|||+||.+.+|..
T Consensus 282 ~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEec
Confidence 011122222 44556777777644 89999999999999985
|
|
| >PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-21 Score=139.48 Aligned_cols=69 Identities=42% Similarity=0.670 Sum_probs=51.3
Q ss_pred CCcee--eeChhHHHhhhcccccCceeeEEEeeCCC-CCCcccCCceEEEEEeecCCCCCCceEEEEEeeecC
Q 039302 50 EGEEL--QCDPTAYNSLHAFHIGWPCLSFDILRDTL-GLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNIS 119 (479)
Q Consensus 50 ~~~~l--~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~-~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~ 119 (479)
|+++| +.+|++|+++|+++++||||||||+||.+ +..| +||++++|++||||++..+|+|+|+++++++
T Consensus 2 e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~-~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p~ 73 (74)
T PF12265_consen 2 EEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNR-NYPHSQYLLLGTQTSGQEQNYLYVMKVSLPS 73 (74)
T ss_dssp HHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT--SEEEEEEEEE---SS-S-EEEEEEEEEEE-
T ss_pred cceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCC-CCccEEEEEEEECcCCCCCCEEEEEEEeCCC
Confidence 34566 78899999999999999999999999988 7888 9999999999999999999999999998764
|
1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A. |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-19 Score=176.65 Aligned_cols=246 Identities=19% Similarity=0.326 Sum_probs=186.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.++.+|...|+|+.|...| +.++||++|..|+||.+.+ ..++..+.||.+.|+.++.+
T Consensus 184 krLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et---------------------~~~lAs~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET---------------------ARCLASCRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccc---------------------hhhhccCCCCccccchhccc
Confidence 4567999999999999999 7888999999999999876 67888999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-Cc----e-
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG-KS----A- 316 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~-~~----~- 316 (479)
..+. +++++++|..|++|.+..+.. ...+.+|+++|++|+|+|- ++.+.||++++||.|-. .. +
T Consensus 242 ~~n~-~iaaaS~D~vIrvWrl~~~~p----vsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 242 SNNT-MIAAASNDKVIRVWRLPDGAP----VSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred hhhh-hhhhcccCceEEEEecCCCch----HHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCC
Confidence 9887 999999999999999988654 2458899999999999985 37789999999999821 00 0
Q ss_pred -------eeEE----------------ecCCCCEEEEEEcCCC----------CcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 317 -------LMSF----------------KAHNADVNVISWNRLA----------SCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 317 -------~~~~----------------~~h~~~v~~l~~~p~~----------~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
+..+ .+....+-+++|.... ..+.+++-.+..+++|++..+. .
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~----l 387 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ----L 387 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch----h
Confidence 0000 0001112222333222 1233333345567888888887 7
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE 443 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~ 443 (479)
++.+.+|...+..+.++|.+..+..+++.||...|||+-.+. |.+..+ .||..+.+
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~----------------------pik~y~--~gh~kl~d 443 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI----------------------PIKHYF--IGHGKLVD 443 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC----------------------cceeee--cccceeec
Confidence 888889999999999999998999999999999999997653 334444 44678889
Q ss_pred EEEeCCCCcEEEEEcCCCceEEeee
Q 039302 444 LHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.+|+++|..++++-.-+.+.|+...
T Consensus 444 ~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 444 GKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cccCCCCceEecCCCCCceEEeccC
Confidence 9999998755555554546666553
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=158.18 Aligned_cols=260 Identities=22% Similarity=0.264 Sum_probs=197.7
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+.....+|.+.|.-+.. -|..++| +..++.+.||+........ ..+ +..++...+.|+++
T Consensus 105 ~i~~~~~~~~a~v~~l~~--fGe~lia-~d~~~~l~vw~~s~~~~e~---------------~l~-~~~~~~~~~~Ital 165 (910)
T KOG1539|consen 105 HIRHTTLLHGAKVHLLLP--FGEHLIA-VDISNILFVWKTSSIQEEL---------------YLQ-STFLKVEGDFITAL 165 (910)
T ss_pred eEEEEeccccceEEEEee--ecceEEE-EEccCcEEEEEeccccccc---------------ccc-ceeeeccCCceeeE
Confidence 334556677777776654 4545665 4888999999988721000 011 12222333347776
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.--+.--+.++.|+..|.+.||++++++. ...+.++...|+++.=+|-=. ++|.|..+|+|.|++++..+ .+.+
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dk-il~s 239 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDK-ILMS 239 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCc-EEEE
Confidence 43333334799999999999999998765 356888889999999999877 99999999999999999986 6677
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
++...+.|++++|..+|..++|+|+..|.+.+||+...+. .......|.+.|+...|.| +..++++++.|+.+++|
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl---~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL---INVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee---eeeeeccccCCcccceecC-CCceEeeccCCCceeEE
Confidence 7655699999999999999999999999999999998773 3334458999999999999 55999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
=..++ +..|.++....||. +..++.|.-.....+.+.+.|+ ++.|.+..
T Consensus 316 vfD~~---------------------dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 316 VFDSG---------------------DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred EeeCC---------------------CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 88766 33456777777776 7999999966557888999987 66665543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-18 Score=164.29 Aligned_cols=216 Identities=17% Similarity=0.245 Sum_probs=170.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCc-----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTG-----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.++.||-.+|++++.+|.+ +++||++... .|+||+... ......+.+|+-.|+
T Consensus 519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~---------------------W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN---------------------WLQVQELEGHSLTVT 576 (764)
T ss_pred HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc---------------------hhhhheecccceEEE
Confidence 5678999999999999999 8999987653 489999987 566668999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC--Cc
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG--KS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~--~~ 315 (479)
.|+|||++. +|++.+.|.++.+|...............+.|+.-|.++.|+|++. +|+|+|.|++|++|..... +.
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhh
Confidence 999999998 9999999999999998654433322234678999999999999998 8999999999999998876 21
Q ss_pred eee-EEecCCCCEEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCCCCCC--------ceEEEeecCCCCeEEEEEeCC
Q 039302 316 ALM-SFKAHNADVNVISWNRLAS----CLLASGSDDGTFSIHDLRLLKGGD--------SVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 316 ~~~-~~~~h~~~v~~l~~~p~~~----~~l~sgs~dg~i~iwDlr~~~~~~--------~~~~~~~~h~~~I~~v~~sp~ 382 (479)
... ....+...|+.++|.|... .+++.|-..|.|.+|......... .......+|...|+.+.|.|.
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 111 3356788999999977432 388999999999999855211100 011223357788999999986
Q ss_pred C---------CCEEEEEeCCCcEEEEECC
Q 039302 383 E---------GSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 383 ~---------~~~las~s~Dg~I~iwdl~ 402 (479)
. ...|++|+.|..++|+++.
T Consensus 735 ~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 735 CSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccccceeEEeeecccceeEEeecc
Confidence 2 2357999999999999874
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=148.05 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=174.2
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
..+|+|.+|+++. ..+|.+..+..|.||...... ..++..++..|...|++++|+|..+ +
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~------------------~w~~~htls~Hd~~vtgvdWap~sn-r 69 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD------------------LWEPAHTLSEHDKIVTGVDWAPKSN-R 69 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCC------------------CceeceehhhhCcceeEEeecCCCC-c
Confidence 4789999999999 678888889999999987631 1578899999999999999999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCC
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNA 325 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~ 325 (479)
|++|+.|..-++|....++.|.. ...+..++..++++.|+|.++ .||+||....|.||-+..... ....-+.+.+
T Consensus 70 Ivtcs~drnayVw~~~~~~~Wkp-tlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKP-TLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred eeEccCCCCccccccCCCCeecc-ceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 99999999999999977777654 234667889999999999998 999999999999998876542 1223356778
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-----CCC---------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRL-----LKG---------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-----~~~---------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.|++++|+|++ -+|++|+.|+..+||..-- ... -+..+..+....+.|..+.|+|.+ ..|+-.+
T Consensus 148 tv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~ 225 (361)
T KOG1523|consen 148 TVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVG 225 (361)
T ss_pred ceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEec
Confidence 89999999999 9999999999999986321 100 012344555567899999999955 9999999
Q ss_pred CCCcEEEEECCCCC
Q 039302 392 ADNQLTIWDLSLEK 405 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~ 405 (479)
.|..|.+-|.....
T Consensus 226 Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 226 HDSTVSFVDAAGPS 239 (361)
T ss_pred CCCceEEeecCCCc
Confidence 99999999987663
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-16 Score=134.38 Aligned_cols=246 Identities=17% Similarity=0.237 Sum_probs=167.2
Q ss_pred ceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcc
Q 039302 92 YTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGC 171 (479)
Q Consensus 92 ~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~ 171 (479)
...||++| ...+.|.|+++..+.+.. + ++. .+.+++ ...+|.++
T Consensus 21 ~~~~l~ag-----n~~G~iav~sl~sl~s~s-------------------------a--~~~--gk~~iv--~eqahdgp 64 (325)
T KOG0649|consen 21 SKQYLFAG-----NLFGDIAVLSLKSLDSGS-------------------------A--EPP--GKLKIV--PEQAHDGP 64 (325)
T ss_pred cceEEEEe-----cCCCeEEEEEehhhhccc-------------------------c--CCC--CCccee--eccccCCC
Confidence 35678887 467889999986442110 0 011 123343 55899999
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
|+.++|.. .+|.+|+ ||.|+-|..+............ ....|.++-...-.+|++|-..|..+ -++.
T Consensus 65 iy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lw--------e~~~P~~~~~~evPeINam~ldP~en-Si~~ 131 (325)
T KOG0649|consen 65 IYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLW--------EVKIPMQVDAVEVPEINAMWLDPSEN-SILF 131 (325)
T ss_pred eeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhh--------hhcCccccCcccCCccceeEeccCCC-cEEE
Confidence 99999993 4566755 4999999987744322100000 00112221112234899999999887 4555
Q ss_pred EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---------
Q 039302 252 GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA--------- 322 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~--------- 322 (479)
++.|+.++-||+.++.. .+.+.+|+..|.++.--.... .+++|+.||++||||+++.+ ++..+..
T Consensus 132 AgGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRP 205 (325)
T ss_pred ecCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccccc-eeEEeccccChhhcCc
Confidence 55799999999998755 366999999999999844444 69999999999999999986 4444422
Q ss_pred C-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
| ...|.+++-+. ..|++|+ ...+.+|.+|... +...|.. ..++..+.|.. ..+++++..+.|.-|.+
T Consensus 206 ~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse----~t~vfpi-pa~v~~v~F~~---d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 206 DWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSE----STCVFPI-PARVHLVDFVD---DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ccCceeEEEeccC---ceEEecC-CCceeEEeccCCC----ceEEEec-ccceeEeeeec---ceEEEeccccceeeeee
Confidence 2 23456666553 5666665 4679999999988 5655553 56778888874 57888888899999998
Q ss_pred CCC
Q 039302 402 SLE 404 (479)
Q Consensus 402 ~~~ 404 (479)
...
T Consensus 274 ~Gv 276 (325)
T KOG0649|consen 274 NGV 276 (325)
T ss_pred ccE
Confidence 754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-17 Score=165.03 Aligned_cols=263 Identities=19% Similarity=0.297 Sum_probs=178.3
Q ss_pred cceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCc-ccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCC
Q 039302 170 GCVNRIRAMS-QNPHICASWADTGHVQVWDFRSHL-NALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 170 ~~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~ 246 (479)
..|+.+.+.. ++..++.+|+.||.|+||+--... ...+... ....+.. +.+-.+...-++|.....
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT-----------aw~~Ls~~~~~~r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT-----------AWSSLSDQLPGARGTGLVVDWQQQSG 1178 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEE-----------eeccccccCccCCCCCeeeehhhhCC
Confidence 4566766655 335688899999999999854421 1110000 0111111 112223345678987775
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEecCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFKAHN 324 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~~h~ 324 (479)
.|++++.-..|+|||........ ....+....|+++.-+-.+.++|++|-.||.|++||.|.... .+...+.|+
T Consensus 1179 -~Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1179 -HLLVTGDVRSIRIWDAHKEQVVA---DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN 1254 (1387)
T ss_pred -eEEecCCeeEEEEEecccceeEe---ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccC
Confidence 77777768899999997643322 112234566788776655556999999999999999998743 566778898
Q ss_pred CC--EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC--C-CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 325 AD--VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK--H-PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 325 ~~--v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~--~-~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.. |..+.+.+.|-..|++|+.+|.|++||+|.... ....++..|. + .++++..+++. .++|+|+. +.|.||
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIY 1330 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEE
Confidence 87 999999998855699999999999999998531 1233333333 3 59999999965 89999998 999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++....-. ...+.-.|.-+....+.+++|||... ++|.|+.|. |+||...+-
T Consensus 1331 ~~~G~~l~------------------~~k~n~~F~~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1331 SLSGEQLN------------------IIKYNPGFMGQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecChhhhc------------------ccccCcccccCcCCCcceeeecchhH-hhhhccCCceEEEeecCCc
Confidence 99865321 11112223333223689999999874 677777777 888876543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=146.58 Aligned_cols=217 Identities=16% Similarity=0.205 Sum_probs=158.3
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 226 ~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
+..+++|.++|++|+|+.+|. .|+|++.|++|+||+++.-....-......-.-+-.+.+.|.|+-+.+++++-...+|
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 345789999999999999999 9999999999999999763221000000111112457889999999788888888899
Q ss_pred EEEEcCCCCc---ee--------eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 306 AIWDTRVGKS---AL--------MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 306 ~iwD~~~~~~---~~--------~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
++|-+..... +. ..-+.|...+..+-....+ .+|++++.|..|.+|+++ ++ .+.++......-
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq----~L~~idtnq~~n 231 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQ----LLQSIDTNQSSN 231 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cc----eeeeeccccccc
Confidence 9998754321 11 1123466677777666666 899999999999999999 55 677777767777
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcE
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGM 453 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~l 453 (479)
+..+.+|++ +++|+++----|++|.+-..++..- ++ ..-.|...|| ..|..++|+++.. -
T Consensus 232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~f-qe----------------v~rvf~LkGH~saV~~~aFsn~S~-r 292 (420)
T KOG2096|consen 232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTF-QE----------------VKRVFSLKGHQSAVLAAAFSNSST-R 292 (420)
T ss_pred cceeeCCCC-cEEEEecCCCCceEEEEEeccCcch-hh----------------hhhhheeccchhheeeeeeCCCcc-e
Confidence 889999955 9999999999999999876654211 00 0122333444 5799999999985 7
Q ss_pred EEEEcCCC-ceEEeee
Q 039302 454 IVSTAADG-FNILMPS 468 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~ 468 (479)
+++.+.|| .+||++.
T Consensus 293 ~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eEEEecCCcEEEeecc
Confidence 78888888 8999874
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=145.14 Aligned_cols=257 Identities=15% Similarity=0.187 Sum_probs=185.2
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 236 (479)
+|+. .+.+|.+.|+++.|-.++ + |.+|...|.|++|++++ ..++..+. .|+..|
T Consensus 5 dP~f--vLRp~~~~v~s~~fqa~~-r-L~sg~~~G~V~~w~lqt---------------------~r~~~~~r~~g~~~i 59 (323)
T KOG0322|consen 5 DPFF--VLRPHSSSVTSVLFQANE-R-LMSGLSVGIVKMWVLQT---------------------ERDLPLIRLFGRLFI 59 (323)
T ss_pred CCee--Eeccccchheehhhccch-h-hhcccccceEEEEEeec---------------------Cccchhhhhhcccee
Confidence 4565 455999999999999887 3 66889999999999998 45555666 456688
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc----------------------cc-----------------------
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW----------------------NV----------------------- 271 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~----------------------~~----------------------- 271 (479)
+.+.--|++ .|.+-+.|+.+.+|++...... ..
T Consensus 60 t~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 60 TNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred eceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 888888874 7889999999999998652100 00
Q ss_pred ----CCCCcccCCCcEEEEEECCCC--CcEEEEEeCCCcEEEEEcCCCCc---------eeeEEecCCCCEEEEEEcCCC
Q 039302 272 ----DPNPFIGHAASVEDLQWSPTE--SDVFASCSVDGNIAIWDTRVGKS---------ALMSFKAHNADVNVISWNRLA 336 (479)
Q Consensus 272 ----~~~~~~~h~~~V~~l~~sp~~--~~~l~s~s~dg~I~iwD~~~~~~---------~~~~~~~h~~~v~~l~~~p~~ 336 (479)
....-.+..+.|.|..|.-.. ..++++|-++|.+.+||+.++.. .......|..+|.++.|.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 000001234566676653322 23567788999999999998631 223346789999999998765
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhh
Q 039302 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAK 416 (479)
Q Consensus 337 ~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~ 416 (479)
..=++|+-+..+.+|.+.......+.-....--.-.|..+..-|++ .+|||+|.|++|+||..++..
T Consensus 218 -~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~----------- 284 (323)
T KOG0322|consen 218 -DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN----------- 284 (323)
T ss_pred -cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC-----------
Confidence 4557778888889998875432111222223334568889999965 999999999999999999875
Q ss_pred cccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 417 TREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 417 ~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
|..++..|. ..|++++|+|+.+ ++|+++.|+ |.+|++.
T Consensus 285 -----------pLAVLkyHs--agvn~vAfspd~~-lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 285 -----------PLAVLKYHS--AGVNAVAFSPDCE-LMAAASKDARISLWKLY 323 (323)
T ss_pred -----------chhhhhhhh--cceeEEEeCCCCc-hhhhccCCceEEeeecC
Confidence 234555565 6799999999975 889999998 9999873
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=160.31 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=150.5
Q ss_pred EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC
Q 039302 188 WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA 267 (479)
Q Consensus 188 ~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~ 267 (479)
.+..|.|-||+++...... ...+-.+ -....|+.+.|.|....+||.++.||.|+||.+..++
T Consensus 599 ~g~gG~iai~el~~PGrLP----------------Dgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLP----------------DGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred cCCCceEEEEEcCCCCCCC----------------ccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 3557999999998743222 1112222 1345899999999988899999999999999998765
Q ss_pred cc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe
Q 039302 268 TW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 268 ~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
.. ......+..|...|+++.|+|--.++|++++.|-+|+|||+++.+ ....+.+|...|..++|+|+| ..+|+.+
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdG-r~~AtVc 739 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDG-RRIATVC 739 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCC-cceeeee
Confidence 42 223355788999999999999988899999999999999999986 667889999999999999999 9999999
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEeCC----CcEEEEECCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSSAD----NQLTIWDLSLE 404 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s~D----g~I~iwdl~~~ 404 (479)
.||+|++|..|+... +++.-.+.. ..--.|-|.-++ .++++.+.| .+|.+||....
T Consensus 740 KDg~~rVy~Prs~e~---pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSREQ---PVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred cCceEEEeCCCCCCC---ccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhc
Confidence 999999999998875 665544322 223467787755 666666554 46778876654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=162.35 Aligned_cols=234 Identities=19% Similarity=0.339 Sum_probs=178.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|+.++|-|+|..+++.++ ..+.|||.+. +..+.++++|.+-|+|++|+.+|+ ++|
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~nd---------------------G~llqtLKgHKDtVycVAys~dGk-rFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSD---------------------GTLLQPLKGHKDTVYCVAYAKDGK-RFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCC---------------------cccccccccccceEEEEEEccCCc-eec
Confidence 8999999999987776644 5799999997 788899999999999999999998 999
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
||+.|..|.+|...-.+.. .-.|+..|.|+.|+|-.. .+++|+-. ..-+|...... +... .....|+++
T Consensus 70 SG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~--V~K~-kss~R~~~C 138 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKS--VSKH-KSSSRIICC 138 (1081)
T ss_pred cCCCceeEEEeccccccee------eeccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhh--HHhh-hhheeEEEe
Confidence 9999999999997654432 236899999999999887 89999854 46678776542 2222 234578999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC----CEEEEEeCCCcEEEEECCCCCC
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG----STLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~----~~las~s~Dg~I~iwdl~~~~~ 406 (479)
+|+.+| .+|+.|-.+|+|.|-+-.... ...+..-.+...+|++|+|+|..+ ..++......++.+|.++...-
T Consensus 139 sWtnDG-qylalG~~nGTIsiRNk~gEe--k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 139 SWTNDG-QYLALGMFNGTISIRNKNGEE--KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI 215 (1081)
T ss_pred eecCCC-cEEEEeccCceEEeecCCCCc--ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence 999999 999999999999986432221 112233335778999999999653 4677888888888888865421
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
. ....-.-...++.+.|+|.++++.|++.++++|.-
T Consensus 216 g-------------------------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 216 G-------------------------KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred c-------------------------ccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 0 00111125778999999998888888888888854
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=136.55 Aligned_cols=244 Identities=16% Similarity=0.239 Sum_probs=173.2
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|.+-+++|.+ ++++.|+.+|+|.++.++...+....+. ...++..+++|.++++.|+|.. . +|+
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~-----------gk~~iv~eqahdgpiy~~~f~d--~-~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPP-----------GKLKIVPEQAHDGPIYYLAFHD--D-FLL 76 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCC-----------CCcceeeccccCCCeeeeeeeh--h-hee
Confidence 56677899988 7888999999999999987543322111 2456777899999999999983 2 788
Q ss_pred EEeCCCeEEEEecCCCCc-------cccCCCCcc---cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 251 SGDCNSCIHLWEPASDAT-------WNVDPNPFI---GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~-------~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+|+ ||.|+-|.-+.... |.+ ..++. ..-..|+++-..|..+.+|.+| .|+.++-||+.+++ ....+
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~-~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~-i~r~~ 152 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEV-KIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGR-IQREY 152 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhh-cCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCE-EEEEE
Confidence 887 69999997654322 111 11111 1124688999999988555554 79999999999996 67789
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---------C-CCCeEEEEEeCCCCCEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---------H-KHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---------h-~~~I~~v~~sp~~~~~las~ 390 (479)
++|...|.++.-.... ..+++|+.||+++|||.++.+ .+..+.. | ..+|.+++-+. .+|++|
T Consensus 153 rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k----~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG 224 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQK----HVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG 224 (325)
T ss_pred cCCcceeeeeeecccC-cceeecCCCccEEEEeccccc----eeEEeccccChhhcCcccCceeEEEeccC---ceEEec
Confidence 9999999999885444 589999999999999999988 5655543 2 23566776653 566665
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+ ...+.+|.|+.... ..+|.-. ..|..+.|-.+ ++++++.++ ++-|.+.-
T Consensus 225 g-Gp~lslwhLrsse~-----------------------t~vfpip--a~v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSES-----------------------TCVFPIP--ARVHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred C-CCceeEEeccCCCc-----------------------eEEEecc--cceeEeeeecc---eEEEeccccceeeeeecc
Confidence 4 56799999998752 2233222 35777778654 455566444 77787755
Q ss_pred c
Q 039302 470 I 470 (479)
Q Consensus 470 ~ 470 (479)
+
T Consensus 276 v 276 (325)
T KOG0649|consen 276 V 276 (325)
T ss_pred E
Confidence 4
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=157.78 Aligned_cols=215 Identities=15% Similarity=0.241 Sum_probs=164.8
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
....|+.+.|.|.+...||.+++||.|+||.+....-.- ....|...+.+|...|+.|.|+|-...
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------~~~tPe~~lt~h~eKI~slRfHPLAad 691 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------NEMTPEKILTIHGEKITSLRFHPLAAD 691 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------ccCCcceeeecccceEEEEEecchhhh
Confidence 346799999999988999999999999999997632110 135677889999999999999999888
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~~ 326 (479)
.|++++.|-+|+|||+.+... ...+.+|++.|.+++|+|+|+ .+|+.+.||+|++|.-|....++..-.+. ...
T Consensus 692 vLa~asyd~Ti~lWDl~~~~~----~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLANAKL----YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred Hhhhhhccceeeeeehhhhhh----hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 999999999999999988654 356899999999999999999 99999999999999999886655443221 123
Q ss_pred EEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCCCCCceEEEeecCCCC-eEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 327 VNVISWNRLASCLLASGSDD----GTFSIHDLRLLKGGDSVVAHFEYHKHP-VTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~d----g~i~iwDlr~~~~~~~~~~~~~~h~~~-I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
-..|.|.-++ .++++.+.| ..|.+||..+.. ..++.+..-...+ +.--.+.++.+.+|++|-.|..|.+|.+
T Consensus 767 gARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~--~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 767 GARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD--LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc--CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 4567888888 565555555 468899987765 1244443322111 1222455666678899999999999998
Q ss_pred CCC
Q 039302 402 SLE 404 (479)
Q Consensus 402 ~~~ 404 (479)
-..
T Consensus 844 ~~e 846 (1012)
T KOG1445|consen 844 IYE 846 (1012)
T ss_pred cCC
Confidence 765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-15 Score=145.16 Aligned_cols=251 Identities=29% Similarity=0.481 Sum_probs=188.9
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
........|...|..+.|+|++. .+++++. ++.+++|++.. ...+..+.+|...+.+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSS 203 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC---------------------CceEEeeccCCCceEE
Confidence 34457889999999999999995 6666675 99999999986 4667778889999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++...+++++.|+.|++||...+.... ..+.+|...+ ...|+|++. ++++++.|+.+++|+++.......
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR---STLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEe---eecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEE
Confidence 99998886345555999999999877433211 1466777775 448999995 888999999999999998764244
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEE-eCCCc
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVS-SADNQ 395 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~-s~Dg~ 395 (479)
.+..|...+.++.|+|.+ ..+++++.|+.+.+||++... ...... .|...+..+.| +.++..++.+ ..|+.
T Consensus 279 ~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~ 352 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK----LLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGT 352 (466)
T ss_pred EEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc----eEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCc
Confidence 446788999999999977 666668888999999998877 344444 78888999999 5232455555 68899
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE-EcCCC-ceEEeeecc
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS-TAADG-FNILMPSNI 470 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s-~~~dg-i~iw~~~~~ 470 (479)
+.+|++.... ..........+..+.+.+ . ..+++ +..++ +.+|+....
T Consensus 353 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 353 IRLWDLRTGK-------------------------PLKTLEGHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred EEeeecCCCc-------------------------eeEEecCCceEEEEEECC-C-CCEEEEecCCCceEEEecccC
Confidence 9999998762 111122112388999999 6 55555 66665 899988665
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-15 Score=146.01 Aligned_cols=249 Identities=24% Similarity=0.406 Sum_probs=188.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEe-
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDW- 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~- 241 (479)
....|...+.++.+.+.+ ..++.++.++.+.+|+.... ...+..+.++. ..+..+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 118 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNG--------------------EKLIKSLEGLHDSSVSKLALS 118 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCC--------------------ceeEEEEeccCCCceeeEEEE
Confidence 567899999999999999 66777789999999999872 11445555533 36777777
Q ss_pred CCCCCCeEEEEe-CCCeEEEEecCC-CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCceee
Q 039302 242 NPVAPGRLVSGD-CNSCIHLWEPAS-DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIWDTRVGKSALM 318 (479)
Q Consensus 242 s~~~~~~l~sg~-~dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iwD~~~~~~~~~ 318 (479)
++++...++..+ .|+.+.+|++.. ... ...+..|...|.+++|+|++. .+++++. |+.+++|+++... .+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 192 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKL----IRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-PLS 192 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeE----EEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc-eEE
Confidence 666652444434 499999999976 222 245778999999999999998 7888875 9999999999854 667
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE-EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA-HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~-~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+..|...|.+++|+|++..++++++.|+.|++||.+... .+. .+.+|...+ ...|+|++ .++++++.|+.++
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~ 266 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIR 266 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc----EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEE
Confidence 7788999999999999884366666999999999988555 566 688888875 44899976 8888999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+|++..... ....+..| ...|.++.|+|....+++ ++.++ +.+|+...
T Consensus 267 ~~~~~~~~~---------------------~~~~~~~~--~~~v~~~~~~~~~~~~~~-~~~d~~~~~~~~~~ 315 (466)
T COG2319 267 LWDLRSSSS---------------------LLRTLSGH--SSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLET 315 (466)
T ss_pred EeeecCCCc---------------------EEEEEecC--CccEEEEEECCCCCEEEE-eeCCCcEEEEEcCC
Confidence 999987641 01111122 357999999997654555 66666 78885543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-14 Score=138.54 Aligned_cols=260 Identities=10% Similarity=0.075 Sum_probs=164.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....+.+....+.++|+++.+++++..++.|.+|++.... . ...+.... .......++|+|
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-----------------l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-----------------LTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-----------------eEEeeeec-CCCCceEEEECC
Confidence 4445567788999999996666666678999999997410 0 01111111 222456899999
Q ss_pred CCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee----e
Q 039302 244 VAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL----M 318 (479)
Q Consensus 244 ~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~----~ 318 (479)
+++ +|++++ .++.|.+|++.+.+........+. +......++++|+++.++++...++.|.+||+.+..... .
T Consensus 90 ~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 90 QGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 998 666655 588999999975332211111122 223467789999998666777778999999998643111 0
Q ss_pred EE-ecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCCCEEEEE
Q 039302 319 SF-KAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 319 ~~-~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~~~las~ 390 (479)
.. .........+.|+|++ .+|+++. .++.|.+||+.........+..+..+ ......+.++|++ ++|+++
T Consensus 168 ~~~~~~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~ 245 (330)
T PRK11028 168 EVTTVEGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYAC 245 (330)
T ss_pred ceecCCCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEe
Confidence 11 1123446789999999 5555554 48999999997432101133333321 1223468899966 666666
Q ss_pred e-CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 391 S-ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 391 s-~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
. .++.|.+|++...... ..+..+.. ......++|+|++..++++...++ |.+|++
T Consensus 246 ~~~~~~I~v~~i~~~~~~----------------------~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 246 DRTASLISVFSVSEDGSV----------------------LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred cCCCCeEEEEEEeCCCCe----------------------EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 4 4789999999654210 11122211 124678999999998888776555 999987
Q ss_pred e
Q 039302 468 S 468 (479)
Q Consensus 468 ~ 468 (479)
.
T Consensus 304 ~ 304 (330)
T PRK11028 304 D 304 (330)
T ss_pred c
Confidence 4
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=149.70 Aligned_cols=203 Identities=17% Similarity=0.303 Sum_probs=154.9
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..++.++.||.+.|.+-.. +....+..|.+.+.+-.|+|+|. -|+|++.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~----------------------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------------------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWS 132 (737)
T ss_pred ceEEEEcCCceEEEecccc----------------------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEe
Confidence 4566679999999977553 44456778999999999999998 788999999999998
Q ss_pred cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE
Q 039302 263 PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 342 (479)
-.. ... ..+.....+|.|++|.|+..+++.+.+ +.+.|=-+.... .+...++|.+-|.+++|++.+ .++++
T Consensus 133 rsG--MLR---Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s-~lI~s 203 (737)
T KOG1524|consen 133 RSG--MLR---STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQS-NIIAS 203 (737)
T ss_pred ccc--hHH---HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc-ceeEEeccCcEEEEeecCccc-cceee
Confidence 533 211 223345678999999999986666554 567666665543 567889999999999999999 99999
Q ss_pred EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccC
Q 039302 343 GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVN 422 (479)
Q Consensus 343 gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 422 (479)
|+.|-..+|||-... ++..-..|..+|++|+|+|+ ..++.+|. ++++ +...
T Consensus 204 gGED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R---~~~p------------------ 254 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTAR---FSSP------------------ 254 (737)
T ss_pred cCCceeEEeecccCc-----ccccCChhccceeeeeeccc--cceeeeee-eeee---ecCC------------------
Confidence 999999999997532 67778889999999999994 56666653 3344 2221
Q ss_pred CCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 423 APEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 423 ~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
....|..++|+++|..+.+.++.+
T Consensus 255 --------------~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 255 --------------RVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred --------------CccceEEEEEcCCCceeeccccCc
Confidence 124689999999997555555555
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-16 Score=137.06 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=150.9
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
..|+.|++.|. +||+|..||.|.|||+.+.+. .+.+.+|..+|.+++||++|+ .|+++|.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i----ar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs- 98 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI----ARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGS- 98 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccch----hhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCC-
Confidence 78999999998 999999999999999988654 366889999999999999999 99999999999999999986
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC---CCCeEEEEEeCCCCCEEEEEeC
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH---KHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h---~~~I~~v~~sp~~~~~las~s~ 392 (479)
++..+. ..++|..+.|+|...+..++.-.+..-.+-++..... .+...... ...-.+..|.+. +.++++|..
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h---~~Lp~d~d~dln~sas~~~fdr~-g~yIitGts 173 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH---SVLPKDDDGDLNSSASHGVFDRR-GKYIITGTS 173 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce---eeccCCCccccccccccccccCC-CCEEEEecC
Confidence 666554 5789999999998867776666666666666654321 11111110 111123357775 499999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC--CCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG--QKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g--~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
-|.+.+++..+.+.. ..+.- ...|+.+.++..+..+++-+++.-|+.|....+
T Consensus 174 KGkllv~~a~t~e~v-------------------------as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 174 KGKLLVYDAETLECV-------------------------ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred cceEEEEecchheee-------------------------eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 999999999887431 11111 246999999999987777777666888888766
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=153.46 Aligned_cols=253 Identities=18% Similarity=0.271 Sum_probs=175.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC---CCceEEEEeCCC-C
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH---KDEGYAIDWNPV-A 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~-~ 245 (479)
+.-..+.|+|..+ .++++...-.|+|||.+. ++.+..|..+ ...|+.|.+-.. .
T Consensus 1065 ~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~---------------------~~~l~~F~n~~~~~t~Vs~l~liNe~D 1122 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP-QIAAADDRERIRVWDWEK---------------------GRLLNGFDNGAFPDTRVSDLELINEQD 1122 (1387)
T ss_pred CCCceeeecCCCc-eeEEcCCcceEEEEeccc---------------------CceeccccCCCCCCCccceeeeecccc
Confidence 4466788899885 555657677899999987 3444444333 236777776543 3
Q ss_pred CCeEEEEeCCCeEEEEecCCCC--cccc--CCCCcccC----CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 246 PGRLVSGDCNSCIHLWEPASDA--TWNV--DPNPFIGH----AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~--~~~~--~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
..+|++|++||.|+||+--... .... .-..+.++ .+.-.-+.|..... +|+++|.-..|+|||..... .+
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~-~~ 1200 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQ-VV 1200 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccce-eE
Confidence 3489999999999999754321 1110 00111111 11113456777766 56666668999999998765 33
Q ss_pred eEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC--eEEEEEeCCCCCEEEEEeCCC
Q 039302 318 MSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP--VTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 318 ~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~--I~~v~~sp~~~~~las~s~Dg 394 (479)
..+ .+....|++++-+-..+++|++|..||.|++||.|.... ...+...+.|... |..+.+.+.+-..|++||.||
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 333 445667888877766669999999999999999998764 3567888889988 999999997655699999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.|++||++....+ . .-.+..|..- ...+++..|++.+ ++|+|+...|.||.+.
T Consensus 1280 ~I~~~DlR~~~~e-------------------~-~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKE-------------------T-FLTIVAHWEYGSALTALTVHEHAP-IIASGSAQLIKIYSLS 1333 (1387)
T ss_pred eEEEEecccCccc-------------------c-cceeeeccccCccceeeeeccCCC-eeeecCcceEEEEecC
Confidence 9999999985211 1 1122333311 2589999999987 8888888558999874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=145.99 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=155.1
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
-+++|+.+| ..+|+|+.||++|||++.. ...+.....|..+|.+|+|+|++. .|++-
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps---------------------~~t~l~e~~~~~eV~DL~FS~dgk-~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS---------------------MLTILEEIAHHAEVKDLDFSPDGK-FLASI 204 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc---------------------chhhhhhHhhcCccccceeCCCCc-EEEEe
Confidence 678999998 7999999999999999887 456667778999999999999998 99999
Q ss_pred eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC---Cc-EEEEEeCCCcEEEEEcCCCCc----eeeEEecCC
Q 039302 253 DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE---SD-VFASCSVDGNIAIWDTRVGKS----ALMSFKAHN 324 (479)
Q Consensus 253 ~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~-~l~s~s~dg~I~iwD~~~~~~----~~~~~~~h~ 324 (479)
+.| ..+||+.+++..+.. ..-.........+.|+.++ .- +++.-..-+.|+.||+..... ...+.....
T Consensus 205 g~d-~~~VW~~~~g~~~a~--~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~ 281 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALAR--KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF 281 (398)
T ss_pred cCC-ceEEEEeccCchhhh--cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc
Confidence 989 999999998744321 1112233445667777666 21 333344567788877765432 222222334
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
..|.+++.+.+| +++|.|+.||.|-|++....+. ....-+.|...|+.+.|+|+. +++++.+.|.++.|..+...
T Consensus 282 ~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 282 KSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CcceeEEEcCCC-cEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence 579999999999 9999999999999999998884 344456799999999999955 89999999999999888764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=147.48 Aligned_cols=275 Identities=21% Similarity=0.303 Sum_probs=200.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l 239 (479)
+..++.+|.|+|+.|.|...| .++++||.|..|.+||... .++... ..||...|+.-
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~---------------------~~~~l~f~SGH~~NvfQa 191 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS---------------------GSPKLSFESGHCNNVFQA 191 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhc---------------------cCcccccccccccchhhh
Confidence 345788999999999999999 8999999999999999987 333333 45788889988
Q ss_pred EeCCCCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--e
Q 039302 240 DWNPVAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--A 316 (479)
Q Consensus 240 ~~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~ 316 (479)
.|-|.... .|++++.||.+++=.+...+... ....+..|.++|.-++.-|..++.|.+|+.|+.+.-+|+|+... .
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e-~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVE-NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeecccccee-cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 89887533 79999999999998875543322 12456779999999999999999999999999999999998742 2
Q ss_pred eeEEecCCC---CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--CceEEEeecC------CCCeEEEEEeCCCCC
Q 039302 317 LMSFKAHNA---DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--DSVVAHFEYH------KHPVTSIEWSPHEGS 385 (479)
Q Consensus 317 ~~~~~~h~~---~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--~~~~~~~~~h------~~~I~~v~~sp~~~~ 385 (479)
+.....+.. ..+.++.+|.+.+.+++|+.|..+++||.|..... ..++..|..| .-.|++++++..+ .
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-s 349 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-S 349 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-c
Confidence 222344444 68899999999889999999999999999987642 1123444332 3469999999755 4
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC-ce
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG-FN 463 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg-i~ 463 (479)
-|.++-.|-.|+++.-....-.+. -.........++.+..|.....|+++-|- |.. .+++||++-| |.
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p---------~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIF 419 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEP---------DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIF 419 (559)
T ss_pred ceeeeecccceEEeccccccCCCC---------CCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEE
Confidence 455555688899984433321000 00000112334556666655569999775 444 5899999988 99
Q ss_pred EEeeec
Q 039302 464 ILMPSN 469 (479)
Q Consensus 464 iw~~~~ 469 (479)
||+-..
T Consensus 420 iW~K~t 425 (559)
T KOG1334|consen 420 IWDKKT 425 (559)
T ss_pred EEecch
Confidence 998654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=146.55 Aligned_cols=190 Identities=22% Similarity=0.329 Sum_probs=148.0
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.++|.|+++.+.+ ..+.+|+.||+|+.|++........... ......++.||.+.|+.+++
T Consensus 337 i~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~d-----------p~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYD-----------PSVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred eEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccC-----------cchhccceeccccceeeeee
Confidence 34889999999999999998 6788999999999999874222111110 12344578899999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCcccc--C--------------------------------------CCCcc----
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNV--D--------------------------------------PNPFI---- 277 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--~--------------------------------------~~~~~---- 277 (479)
|.... +|++++.||++++|+......... . ...+.
T Consensus 405 s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 405 SSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred ccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 99988 999999999999999865322000 0 00000
Q ss_pred ---cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 278 ---GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 278 ---~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.-...++-+.++|+.. +.+++..|+.|+++|..++. ++....+|...++++++.|++ .+|++|+.||.+++|.+
T Consensus 484 ~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~-~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGK-ILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CcccccCccceEEecCCCC-eeEecccCCceecccccccc-cchheeeccceecceeecCCC-ceEEeecCCceeehhhc
Confidence 0113467788999987 99999999999999999986 788889999999999999999 89999999999999999
Q ss_pred CCCCCCCceEEEeecCC
Q 039302 355 RLLKGGDSVVAHFEYHK 371 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~ 371 (479)
.... ++.....|.
T Consensus 561 d~k~----~~~es~~~r 573 (577)
T KOG0642|consen 561 DVKT----CVLESTAHR 573 (577)
T ss_pred cchh----eeecccccc
Confidence 7766 555555554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-15 Score=152.32 Aligned_cols=229 Identities=14% Similarity=0.209 Sum_probs=166.0
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+..+...+..|...|+.++.++....+++|||.||+|++|+......... ..+...++..-...+.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------SARSELTYSPEGSRVE 1102 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--------------eeeeeEEEeccCCceE
Confidence 34566677889999999999998778999999999999999987432210 1334455554567899
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cc-cCCCC--cccCCCcEEEEEECCCCCc-EEEEEeCCCcEEEEEcC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WN-VDPNP--FIGHAASVEDLQWSPTESD-VFASCSVDGNIAIWDTR 311 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~-~~~~~--~~~h~~~V~~l~~sp~~~~-~l~s~s~dg~I~iwD~~ 311 (479)
++...+.+. .+|.|+.||.|++.++..... .. ...+. .......|..-+|...... .++.+..-+.|..||+|
T Consensus 1103 ~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1103 KVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 999999998 999999999999999976211 10 00111 1122223444455544444 78888899999999999
Q ss_pred CCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCC--CEE
Q 039302 312 VGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEG--STL 387 (479)
Q Consensus 312 ~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~--~~l 387 (479)
+... -........+.|++++.+|.+ +.+++|+..|.+.+||+|-.. ++.... ++..+|+.+..+|..+ ...
T Consensus 1182 ~~~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred hhhhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCCCceE
Confidence 8742 112223345679999999999 899999999999999999877 566543 3568899999888655 455
Q ss_pred EEEe--CCCcEEEEECCCCCC
Q 039302 388 AVSS--ADNQLTIWDLSLEKD 406 (479)
Q Consensus 388 as~s--~Dg~I~iwdl~~~~~ 406 (479)
++++ ..+.|.+|++.++.+
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EEecccCCCceeeeecccCcc
Confidence 5444 478999999988743
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=146.90 Aligned_cols=242 Identities=15% Similarity=0.185 Sum_probs=171.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|+|++|+.+| ..+|+|+.|..|.||.-.- +-+..+ .|++.|.||.|+
T Consensus 47 qtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl----------------------EG~LkY-SH~D~IQCMsFN 102 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL----------------------EGILKY-SHNDAIQCMSFN 102 (1081)
T ss_pred cccccccceEEEEEEccCC-ceeccCCCceeEEEecccc----------------------cceeee-ccCCeeeEeecC
Confidence 5788999999999999999 8999999999999999664 222333 699999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~ 321 (479)
|-.. .|+||+-+ ..-+|........ .......|.+++|..+|. +|+.|-.+|+|.|-+-....+. +..-.
T Consensus 103 P~~h-~LasCsLs-dFglWS~~qK~V~------K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 103 PITH-QLASCSLS-DFGLWSPEQKSVS------KHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPG 173 (1081)
T ss_pred chHH-Hhhhcchh-hccccChhhhhHH------hhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCC
Confidence 9987 99999854 6678877543221 111245788999999999 9999999999999754433211 11123
Q ss_pred cCCCCEEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 322 AHNADVNVISWNRLAS----CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~----~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.+.+|.+++|+|..+ ..+++.....++.+|.+.... +..-+.-.-...|+++.|++ .++..||.|+.++
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-----Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-----IGKDRALNFDPCCISYFTNG-EYILLGGSDKQLS 247 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-----ecccccCCCCchhheeccCC-cEEEEccCCCceE
Confidence 4678999999999752 367777777777777765432 22222223344689999965 8889999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|--..- .+-..-.-...|+.++.+|++..+.+.|-++.|-.|++.
T Consensus 248 ~fTR~Gv-------------------------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 248 LFTRDGV-------------------------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEeecCe-------------------------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9864322 111111212369999999999755554444447777653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.2e-15 Score=129.80 Aligned_cols=262 Identities=15% Similarity=0.111 Sum_probs=181.8
Q ss_pred EEEecCCcceeEEEEec---CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMS---QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
++.+.| ..++.+.|+. ++...++-+-..|.|.+|......... ..+++...+-......++
T Consensus 64 ~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~---------------~L~~ls~~ki~~~~~lsl 127 (339)
T KOG0280|consen 64 LQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV---------------HLRGLSSKKISVVEALSL 127 (339)
T ss_pred eeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeee---------------eecccchhhhhheeeeEE
Confidence 344444 4566777764 333366677888999999887632221 112222222222256789
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|++.+. .++++..+|.+.+-+........ .+..+.|..+..-..|+..+++++.+||.|+.+..||+|.++..+..
T Consensus 128 D~~~~~~-~i~vs~s~G~~~~v~~t~~~le~--vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 128 DISTSGT-KIFVSDSRGSISGVYETEMVLEK--VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred EeeccCc-eEEEEcCCCcEEEEecceeeeee--cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 9999998 89999999999966554432222 35688999999999999999999999999999999999966544433
Q ss_pred -EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 320 -FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 320 -~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.|...|.+|.-+|..+.+|+||+.|-.|++||.|+... |+..-. -.+.|+.+.++|.....+..++.-+-.+|
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki 280 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKI 280 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccccCc-cccceEEEEecchhhhHHHHHHHhcCceE
Confidence 5779999999999998889999999999999999997765 665544 35899999999976556666667666888
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEc-CCC-ce-EEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTA-ADG-FN-ILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~-~dg-i~-iw~~~ 468 (479)
-+.+....+.. ..+..+..|. -+..-.|... ..++++|+ .|. ++ +|-..
T Consensus 281 ~~~~~~~~e~~--------------------~~~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 281 LDSSDKVLEFQ--------------------IVLPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred EEecccccchh--------------------eeeeccccccceeeccccccc-cceeeeeeccccceeeeeeec
Confidence 88876543200 1233344333 3667778544 34777765 343 23 55443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=135.81 Aligned_cols=226 Identities=16% Similarity=0.262 Sum_probs=166.7
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+..-..+|+|.+|+++.. .+|.+-....|.||.....+.|.. ...+..|...|+.|.|+|..+ .|++|+.|..-++|
T Consensus 6 ~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~-~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEP-AHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCcee-ceehhhhCcceeEEeecCCCC-ceeEccCCCCcccc
Confidence 333456999999999998 999999999999999877654443 467889999999999999988 89999999999999
Q ss_pred EcCCCCc--eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 309 DTRVGKS--ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 309 D~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
....+.. +...+..++..++++.|+|.+ +.||+|+.-..|.||-+.....-...-+.-+.+...|+++.|+|++ -+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VL 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VL 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ce
Confidence 9965532 566677789999999999999 9999999999999998876553111122334577889999999965 89
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCC-CceEEee-cCCCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP-PQLLFIH-QGQKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~l~~~h-~g~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
|++||.|+.++|+..-...-.+.. ....-....| .+++... .....|..+.|+|+|. .|+-.+.|+ +.
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekp--------ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~ 231 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKP--------APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVS 231 (361)
T ss_pred ecccccCcceeEEEEeeeccccCC--------CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceE
Confidence 999999999999987544321110 0011111222 2344433 2224699999999997 555555554 66
Q ss_pred EEeee
Q 039302 464 ILMPS 468 (479)
Q Consensus 464 iw~~~ 468 (479)
+-+..
T Consensus 232 ~~da~ 236 (361)
T KOG1523|consen 232 FVDAA 236 (361)
T ss_pred EeecC
Confidence 65543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=129.73 Aligned_cols=162 Identities=17% Similarity=0.275 Sum_probs=127.7
Q ss_pred CCceEEEEeCCCCCC--eEEEEeCCCeEEEEecCCCCccc------cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 233 KDEGYAIDWNPVAPG--RLVSGDCNSCIHLWEPASDATWN------VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~--~l~sg~~dg~I~lwd~~~~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
.+.+.|..|-..... +|++|-.+|.+.+||+.++.... ........|..+|.++.+.+.-. .=++|+.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dk 228 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDK 228 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCcccc
Confidence 346667775443322 68889999999999998853211 11234567999999999987554 5678888889
Q ss_pred EEEEEcCCCCc--ee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 305 IAIWDTRVGKS--AL-MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 305 I~iwD~~~~~~--~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
+..|.+..... .+ ......+-.|+.+..-|++ ++|||++.|+.|+||..|+.. ++..++.|++.|++++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~----pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN----PLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC----chhhhhhhhcceeEEEeCC
Confidence 99999875421 11 1223344578999999999 999999999999999999999 8999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEC
Q 039302 382 HEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl 401 (479)
+. .++|++|.|++|.+|+|
T Consensus 304 d~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DC-ELMAAASKDARISLWKL 322 (323)
T ss_pred CC-chhhhccCCceEEeeec
Confidence 65 89999999999999987
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=146.14 Aligned_cols=206 Identities=15% Similarity=0.250 Sum_probs=165.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
...+.|...|+.+.|+..| .+|||... ...|.|+++... ....-|+...+-+.++
T Consensus 515 ~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~---------------------~sQ~PF~kskG~vq~v 572 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKR---------------------KSQSPFRKSKGLVQRV 572 (733)
T ss_pred EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEecccc---------------------cccCchhhcCCceeEE
Confidence 4678999999999999999 56665544 356889999872 3334455556789999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.|+|... +|++++ ...|+|||+..... . ..+......|..++.+|.|. .++.|+.|+.+..+|+.-..++..+
T Consensus 573 ~FHPs~p-~lfVaT-q~~vRiYdL~kqel-v---KkL~tg~kwiS~msihp~GD-nli~gs~d~k~~WfDldlsskPyk~ 645 (733)
T KOG0650|consen 573 KFHPSKP-YLFVAT-QRSVRIYDLSKQEL-V---KKLLTGSKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSSKPYKT 645 (733)
T ss_pred EecCCCc-eEEEEe-ccceEEEehhHHHH-H---HHHhcCCeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCcchhHH
Confidence 9999998 888887 56999999976322 1 23334456789999999998 6888999999999999988778889
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC-----CCCceEEEeecCCCC----eEEEEEeCCCCCEEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK-----GGDSVVAHFEYHKHP----VTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~-----~~~~~~~~~~~h~~~----I~~v~~sp~~~~~las~ 390 (479)
+.-|...+.+++|++.- .+|++|++||++.|+.-+-.. ..-.|+..+.+|... |..+.|+|.. .+|+++
T Consensus 646 lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsA 723 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSA 723 (733)
T ss_pred hhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEec
Confidence 99999999999999988 899999999999998644221 112467788888766 9999999976 889999
Q ss_pred eCCCcEEEE
Q 039302 391 SADNQLTIW 399 (479)
Q Consensus 391 s~Dg~I~iw 399 (479)
+.||+|++|
T Consensus 724 GAd~tirlf 732 (733)
T KOG0650|consen 724 GADGTIRLF 732 (733)
T ss_pred CCCceEEee
Confidence 999999998
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=133.44 Aligned_cols=235 Identities=13% Similarity=0.087 Sum_probs=166.1
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc--CC-CCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV--DP-NPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--~~-~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+.+|.+.|.+|.|+.++. +|++|+.|..+++|++...-...+ ++ ..-..|.+.|.|++|.-.+. .+.+|+.++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcc
Confidence 44678999999999999987 999999999999999864211111 01 11234668999999998777 999999999
Q ss_pred cEEEEEcCCCCceeeEEecCC---CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 304 NIAIWDTRVGKSALMSFKAHN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+|.+.|+.+.+ .+ .+.+|. +.|..+..+|.. +.|++.+.++.|.+||.|.......++. .........++.|+
T Consensus 128 ~VI~HDiEt~q-si-~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 128 TVIKHDIETKQ-SI-YVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFH 203 (609)
T ss_pred eeEeeecccce-ee-eeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceeeeec
Confidence 99999999875 33 333444 489999999997 9999999999999999998764333333 22345677899999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHH-Hhh---------------hcccccCCCCCCCCceEEeecCCC-----
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAE-FKA---------------KTREQVNAPEDLPPQLLFIHQGQK----- 439 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~p~~l~~~h~g~~----- 439 (479)
|-.+.+|++.+.-+-+.+||.+....+.-... +++ ...+........||.++-.|....
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 99999999999999999999998765422111 110 001111222345555444444111
Q ss_pred -----------CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 440 -----------DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 440 -----------~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+++++|--+ +-+++|+++- |++|++.-
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCC
Confidence 2555566544 3477887775 99999853
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=139.53 Aligned_cols=173 Identities=21% Similarity=0.392 Sum_probs=141.7
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-..+|..+.|.++....+|||+.|..|+||.+......... .....+..+..|...|+++.|+|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------~~V~y~s~Ls~H~~aVN~vRf~p~ge- 78 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------MKVEYLSSLSRHTRAVNVVRFSPDGE- 78 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------------eeEEEeecccCCcceeEEEEEcCCcC-
Confidence 44689999999988669999999999999999874221100 02345567889999999999999998
Q ss_pred eEEEEeCCCeEEEEecC--------C-----CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 248 RLVSGDCNSCIHLWEPA--------S-----DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~--------~-----~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.||||+.+|.|.+|... + ...|.+ ...+.+|...|.+++|+|++. ++++++.|.++++||++.+.
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccce
Confidence 99999999999999876 2 112322 344667999999999999998 99999999999999999996
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
....+..|...+..++|.|.+ .++++-+.|...+++.+...
T Consensus 157 -l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 157 -LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred -eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeee
Confidence 677789999999999999999 89999888887777766543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-16 Score=145.74 Aligned_cols=233 Identities=17% Similarity=0.234 Sum_probs=179.4
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-...|..+.|..+. .++|. .....++|||-.. ..++.++.|. +|..|.|.|..-
T Consensus 169 v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~G----------------------tElHClk~~~-~v~rLeFLPyHf- 222 (545)
T KOG1272|consen 169 VMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNG----------------------TELHCLKRHI-RVARLEFLPYHF- 222 (545)
T ss_pred hhhhhhhhhhhcch-HHHHh-hhhceEEEecCCC----------------------cEEeehhhcC-chhhhcccchhh-
Confidence 34678888998877 67777 5667899999654 5566666554 799999999986
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+|++++..|.++--|+.+++.. ..+..-.+.+..++-+|-+. ++-+|...|+|.+|.-.... ++..+..|.++|
T Consensus 223 LL~~~~~~G~L~Y~DVS~GklV----a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ske-PLvKiLcH~g~V 296 (545)
T KOG1272|consen 223 LLVAASEAGFLKYQDVSTGKLV----ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKE-PLVKILCHRGPV 296 (545)
T ss_pred eeeecccCCceEEEeechhhhh----HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcc-hHHHHHhcCCCc
Confidence 8999999999999999887652 33444567888889999988 99999999999999988765 788888999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
.+|++.+.| .++||.+.|..++|||+|+.. .+.++.. ..+...+++|..+ ++++|....|.||.=.....
T Consensus 297 ~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~----ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s- 366 (545)
T KOG1272|consen 297 SSIAVDRGG-RYMATTGLDRKVKIWDLRNFY----QLHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGS- 366 (545)
T ss_pred ceEEECCCC-cEEeecccccceeEeeecccc----ccceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCC-
Confidence 999999999 999999999999999999987 3555444 4567788888633 55556667899995433210
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
.........|.....|.++.|+|-.. +|..|...|
T Consensus 367 ------------------~~~~~pYm~H~~~~~V~~l~FcP~ED-vLGIGH~~G 401 (545)
T KOG1272|consen 367 ------------------GHGETPYMNHRCGGPVEDLRFCPYED-VLGIGHAGG 401 (545)
T ss_pred ------------------CCCCcchhhhccCcccccceeccHHH-eeeccccCC
Confidence 01123455566555899999999874 666666666
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-14 Score=136.40 Aligned_cols=271 Identities=15% Similarity=0.222 Sum_probs=185.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccC-----CCCC--ccccCCCcEEecCCC--
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAG-----HGAP--QVLNQSPLVKFGGHK-- 233 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~h~-- 233 (479)
++-+.|+...++|..+|+|.+++|||...-.|++||+....-.+...-.... ...+ +..-.+.-.++.-|.
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 5667899999999999999999999999999999999875433322110000 0000 000001111111121
Q ss_pred ---------CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 234 ---------DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 234 ---------~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
..+..|+++.-.. -|+.++....|+-+++..+.- ..++....+.+++|..++.+. +|++|+.+|.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~ 198 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHG-LLACGTEDGV 198 (703)
T ss_pred CeeeeeecCcCCccccccCCCc-cEEEeecCcceEEEEcccccc----ccccccccccceeeeecCccc-eEEecccCce
Confidence 2345666665554 455555566888888877543 356777778999999999988 9999999999
Q ss_pred EEEEEcCCCCceeeEE------ecCCC-----CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 305 IAIWDTRVGKSALMSF------KAHNA-----DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~------~~h~~-----~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
|..||.|... .+.++ ..|.. .|+++.|+.++ -.+++|+.+|.|.|||||..++ .+..-.+..-+
T Consensus 199 VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~p 273 (703)
T KOG2321|consen 199 VEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP---LLVKDHGYELP 273 (703)
T ss_pred EEEecchhhh-hheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc---eeecccCCccc
Confidence 9999999874 23332 23333 39999999987 8999999999999999999884 33334445678
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
|..+.|.+.+..--+.+.....++|||-..++. +..-....+++++++-|.. +|
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-------------------------~asiEpt~~lND~C~~p~s-Gm 327 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-------------------------MASIEPTSDLNDFCFVPGS-GM 327 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccCCc-------------------------eeeccccCCcCceeeecCC-ce
Confidence 999999886433333334456889999887742 2222223469999999987 57
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
+..+.+++ +..|-+..+
T Consensus 328 ~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSL 345 (703)
T ss_pred EEEecCCCcceeEEcccc
Confidence 77777776 555554443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-14 Score=140.09 Aligned_cols=262 Identities=13% Similarity=0.131 Sum_probs=180.9
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
..|.-.+++.+++|.+ .++|+|..||.|.+|.--.... .......+.-|..+|.+++|+++|
T Consensus 202 ~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-----------------~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD-----------------DSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred hhhcccceeEEecccc-ceEEEeccCCcEEEEecccccc-----------------ccccceEEEecccccceeEEecCC
Confidence 3577779999999999 8999999999999997443100 123345677799999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEe--
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFK-- 321 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~-- 321 (479)
. +|+||+..|.+.+|.+.+++. +.+..-.++|..+.++|++. +++.+..|..|.+....+... .+..+.
T Consensus 264 ~-~LlSGG~E~VLv~Wq~~T~~k-----qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 264 A-YLLSGGREGVLVLWQLETGKK-----QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred c-eEeecccceEEEEEeecCCCc-----ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 8 999999999999999988764 33555678999999999998 788888899999987754421 111111
Q ss_pred ------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC----------------------------------
Q 039302 322 ------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD---------------------------------- 361 (479)
Q Consensus 322 ------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~---------------------------------- 361 (479)
...+-.+.++++|.- +.++-.+..|.|.+||+-+.....
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred CccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 123445677888844 667777788888888876443200
Q ss_pred -----------------------------ceEE-EeecCCCCeEEEEEe-CCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 362 -----------------------------SVVA-HFEYHKHPVTSIEWS-PHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 362 -----------------------------~~~~-~~~~h~~~I~~v~~s-p~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
.... ....|...+...++. |.....+++++.||.++||-+....+.
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~--- 492 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI--- 492 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc---
Confidence 0000 011355554444443 333338999999999999999654321
Q ss_pred HHHhhhcccccCCCCCCCC-ceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPP-QLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~-~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
......- +....+-+..+++.++|+.+|. +|+.+.++.|.+|+..+
T Consensus 493 ------------~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 493 ------------YKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ------------CcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 0111111 2223333335799999999994 77777777799999877
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-14 Score=142.95 Aligned_cols=215 Identities=18% Similarity=0.155 Sum_probs=142.8
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCC
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDA 267 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~ 267 (479)
+..|+|||... .. ...+..|...+...+|+|++. +|+.++.+ ..|++||+.++.
T Consensus 183 ~~~i~i~d~dg---------------------~~-~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 183 PYEVRVADYDG---------------------FN-QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred eEEEEEECCCC---------------------CC-ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCc
Confidence 46899999876 22 345667788899999999998 88877643 379999997754
Q ss_pred ccccCCCCcccCCCcEEEEEECCCCCcEEEE-EeCCCcEEEE--EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe
Q 039302 268 TWNVDPNPFIGHAASVEDLQWSPTESDVFAS-CSVDGNIAIW--DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 268 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-~s~dg~I~iw--D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
...+ ..+.+| ...++|+|+++ .|+. .+.+|.+.|| |+.++. ...+..+...+...+|+|++..+++++.
T Consensus 240 ~~~l--~~~~g~---~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 240 RKVV--ASFRGH---NGAPAFSPDGS-RLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred eEEE--ecCCCc---cCceeECCCCC-EEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 3221 223344 34689999998 5555 4578876666 555443 4455666777889999999944555555
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
.+|...||++..... ....+ .+.. ..+.|+|++ ..|+.++.++ +.+||+..+..
T Consensus 312 ~~g~~~I~~~~~~~~---~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~------------------ 365 (429)
T PRK01742 312 RSGSPQVYRMSASGG---GASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGST------------------ 365 (429)
T ss_pred CCCCceEEEEECCCC---CeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe------------------
Confidence 678889998765432 22222 3333 467899966 7777776654 66699876631
Q ss_pred CCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 425 EDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 425 ~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
..+... .....+.|+|++..+++++.+++..+|.+.+.
T Consensus 366 -----~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 366 -----EVLSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred -----EEecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 111111 12356789999986666666555888887654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-14 Score=141.21 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=131.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..|...+...+|+|++..++.+... +..|++||+... ..+.+..+.+|. .+++|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg-------------------~~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG-------------------ARKVVASFRGHN---GAPAF 255 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC-------------------ceEEEecCCCcc---CceeE
Confidence 356788899999999999555443322 247999998762 112233344443 46899
Q ss_pred CCCCCCeEEEE-eCCCeEEEE--ecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 242 NPVAPGRLVSG-DCNSCIHLW--EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 242 s~~~~~~l~sg-~~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+|++. +|+.+ +.+|.+.|| |+.++.. ..+..+...+.+.+|+|+++.+++++..+|...||++........
T Consensus 256 SPDG~-~La~~~~~~g~~~Iy~~d~~~~~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 256 SPDGS-RLAFASSKDGVLNIYVMGANGGTP-----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCCC-EEEEEEecCCcEEEEEEECCCCCe-----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 99998 77765 468876655 5544322 234456667889999999994444555678899998765432222
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+ .+.. ...+|+|++ ..|+..+.++ +.+||+.++. .......+ ...++.|+|++ .+|+.++.++.+.+
T Consensus 330 ~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~----~~~lt~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~ 397 (429)
T PRK01742 330 LV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGS----TEVLSSTF--LDESPSISPNG-IMIIYSSTQGLGKV 397 (429)
T ss_pred Ee-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCC----eEEecCCC--CCCCceECCCC-CEEEEEEcCCCceE
Confidence 22 3333 457899999 6777766655 5569998776 22222222 34578899965 88998888998888
Q ss_pred EECC
Q 039302 399 WDLS 402 (479)
Q Consensus 399 wdl~ 402 (479)
|.+.
T Consensus 398 l~~~ 401 (429)
T PRK01742 398 LQLV 401 (429)
T ss_pred EEEE
Confidence 8864
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-13 Score=124.13 Aligned_cols=235 Identities=14% Similarity=0.209 Sum_probs=163.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.++.+.|..+. .+|+.|+.+| -++|..... .+. .........|.-+-|+.. ++|
T Consensus 7 ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~--------------------~k~-~~~~~~~~~IvEmLFSSS---Lva 60 (391)
T KOG2110|consen 7 TINFIGFNQDS-TLLSVGSKDG-YKIFSCSPF--------------------EKC-FSKDTEGVSIVEMLFSSS---LVA 60 (391)
T ss_pred ceeeeeeccce-eEEEccCCCc-eeEEecCch--------------------HHh-hcccCCCeEEEEeecccc---eeE
Confidence 45555677766 7888988887 578887762 121 111111224555666653 555
Q ss_pred EEeCC--CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE---ecCCC
Q 039302 251 SGDCN--SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---KAHNA 325 (479)
Q Consensus 251 sg~~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---~~h~~ 325 (479)
..+.+ ..+++.+++...... ..+ ...+|.++.++.+ .|+++-.+. |.|||++..+ .+.++ ..+..
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~IC---e~~--fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTIC---EIF--FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPK 130 (391)
T ss_pred EEecCCCceEEEEEcccCceEE---EEe--cCCceEEEEEccc---eEEEEEccc-EEEEecccce-eehhhhccCCCcc
Confidence 44433 358888886643311 111 2457899998754 566666554 9999999986 55555 34566
Q ss_pred CEEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc-EEEEECC
Q 039302 326 DVNVISWNRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ-LTIWDLS 402 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~-I~iwdl~ 402 (479)
.+.++++++.+ .+||.-+ ..|.|.|||+.+.+ ++..+..|.+++.+++|+|++ .+|||+|+.|+ |+|+.+.
T Consensus 131 gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~----~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 131 GLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQ----PVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVP 204 (391)
T ss_pred ceEeeccCCCC-ceEEecCCCCCceEEEEEcccce----eeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcC
Confidence 68888888777 6777543 45899999999998 899999999999999999955 99999999996 5899998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC--CeeeEEEeCCCCcEEEEEcCCCceEEeeeccC
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK--DLKELHWHTQVPGMIVSTAADGFNILMPSNIQ 471 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~--~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~~ 471 (479)
.+. .+.....|.. .|.+++|||+.+.|.+++..+.|+||++....
T Consensus 205 ~G~------------------------kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 205 EGQ------------------------KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred Ccc------------------------EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 773 2223333333 49999999999855555555559999998874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=143.46 Aligned_cols=232 Identities=16% Similarity=0.228 Sum_probs=183.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..-..+.++.+|.+++ .|+..|.|-.+|..+ .+....+. -...|.++.|..+.. +|
T Consensus 130 FGPY~~~ytrnGrhll-lgGrKGHlAa~Dw~t---------------------~~L~~Ei~-v~Etv~Dv~~LHneq-~~ 185 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLL-LGGRKGHLAAFDWVT---------------------KKLHFEIN-VMETVRDVTFLHNEQ-FF 185 (545)
T ss_pred cCCeeeeecCCccEEE-ecCCccceeeeeccc---------------------ceeeeeee-hhhhhhhhhhhcchH-HH
Confidence 4567899999995554 668899999999987 44444443 244788999988775 66
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
|++- ...++|||-..... ..+..| ..|..+.|-|..- +|++++..|.++.-|+.+++ .+..+....+.+..
T Consensus 186 AVAQ-K~y~yvYD~~GtEl-----HClk~~-~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~v 256 (545)
T KOG1272|consen 186 AVAQ-KKYVYVYDNNGTEL-----HCLKRH-IRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDV 256 (545)
T ss_pred Hhhh-hceEEEecCCCcEE-----eehhhc-Cchhhhcccchhh-eeeecccCCceEEEeechhh-hhHHHHccCCccch
Confidence 6654 77999999643222 223333 5788999999887 99999999999999999996 67777777889999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHH
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEE 409 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~ 409 (479)
++-||.+ ..+-+|...|+|.+|...+.. ++..+-.|.++|.+|++.+. |+++||+|.|..|+|||++...
T Consensus 257 m~qNP~N-aVih~GhsnGtVSlWSP~ske----PLvKiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~---- 326 (545)
T KOG1272|consen 257 MKQNPYN-AVIHLGHSNGTVSLWSPNSKE----PLVKILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFY---- 326 (545)
T ss_pred hhcCCcc-ceEEEcCCCceEEecCCCCcc----hHHHHHhcCCCcceEEECCC-CcEEeecccccceeEeeecccc----
Confidence 9999999 899999999999999998877 78888889999999999995 4999999999999999999874
Q ss_pred HHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 410 EAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
++...+. ..+...+++|-.+ +||.+-.+.+.||+-
T Consensus 327 --------------------ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 327 --------------------QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred --------------------ccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 2333333 2357788888764 677776677999964
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-13 Score=126.23 Aligned_cols=199 Identities=19% Similarity=0.267 Sum_probs=139.5
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.+++|+.++. .|++|+.||++|+|+...... ......|.+.|.++.|+|+++ +|++-+.| ..+||+++++. +
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~-~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA-A 219 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc-h
Confidence 6899999997 999999999999999654333 244667889999999999999 99999999 99999999984 3
Q ss_pred eeEEe--cCCCCEEEEEEcCCC---CcEEEEE-eCCCeEEEEeCCCCCCCCce--EEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 317 LMSFK--AHNADVNVISWNRLA---SCLLASG-SDDGTFSIHDLRLLKGGDSV--VAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 317 ~~~~~--~h~~~v~~l~~~p~~---~~~l~sg-s~dg~i~iwDlr~~~~~~~~--~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
+.... .....+..+.|+.++ ..+|++. ..-+.|+.||+...... .. ......-...|++++.++++ .++|
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dG-kf~A 297 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDG-KFLA 297 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCC-cEEE
Confidence 33332 223345667776654 2234433 33456777777655421 11 11122234579999999955 9999
Q ss_pred EEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe-ecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI-HQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
.|+.||.|.|++....+. +.+. +.+..-|+++.|+|+...+.-..++....|.++
T Consensus 298 lGT~dGsVai~~~~~lq~------------------------~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQR------------------------LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EeccCCcEEEEEeceeee------------------------eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999999999987742 2222 222236999999999864444334444777776
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
.-
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 53
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=135.63 Aligned_cols=173 Identities=17% Similarity=0.308 Sum_probs=132.7
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
.|+.+++||.+.|.+-.. .. -+....|.+.+.+-.|+|+|. -|++++.||.|+||.-... ...++......|
T Consensus 77 ~~~i~s~DGkf~il~k~~-rV----E~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v 148 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RV----ERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGM--LRSTVVQNEESI 148 (737)
T ss_pred eEEEEcCCceEEEecccc-hh----hhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccch--HHHHHhhcCcee
Confidence 788999999999987533 22 255788999999999999999 8999999999999975432 222334456789
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
.|++|.|+..+.+.+.+ +.+.|=-+.... .+...++|.+-|.++.|+|.+ .++++||+|-..+|||-...
T Consensus 149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~----k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~--- 218 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG--GHISIKPLAANS----KIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA--- 218 (737)
T ss_pred EEEEECCCCCceEEecC--CeEEEeeccccc----ceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc---
Confidence 99999999977777655 455555555544 567789999999999999976 99999999999999997543
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCCce
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADGFN 463 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dgi~ 463 (479)
.+|....|. +|++++|+|+ .+++.++.+.++
T Consensus 219 -----------------------~Lf~S~~~ey~ITSva~npd--~~~~v~S~nt~R 250 (737)
T KOG1524|consen 219 -----------------------NLFTSAAEEYAITSVAFNPE--KDYLLWSYNTAR 250 (737)
T ss_pred -----------------------ccccCChhccceeeeeeccc--cceeeeeeeeee
Confidence 244434333 7999999999 356666665444
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=136.45 Aligned_cols=164 Identities=19% Similarity=0.330 Sum_probs=132.3
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-----c---------cc----------CCCCcccCCCcEEEEEEC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-----W---------NV----------DPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-----~---------~~----------~~~~~~~h~~~V~~l~~s 289 (479)
..|+|+.|-|.+.+.++.+-.+|.++++|...... + .+ +...+.--.+.|+.++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 68999999999988999999999999997632100 0 00 001111224578999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
|+++ +||+.|.||.+||||..+.. .+..++..-+...|++|+|++ ++|++|+.|-.|.||.+...+ .+..-.+
T Consensus 300 ~DG~-~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR----VVARGqG 372 (636)
T KOG2394|consen 300 PDGK-YLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR----VVARGQG 372 (636)
T ss_pred CCCc-eEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccce----EEEeccc
Confidence 9999 99999999999999999864 444455566789999999999 999999999999999998877 8999999
Q ss_pred CCCCeEEEEEeCC-----------------------------------------------CCCEEEEEeCCCcEEEEECC
Q 039302 370 HKHPVTSIEWSPH-----------------------------------------------EGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 370 h~~~I~~v~~sp~-----------------------------------------------~~~~las~s~Dg~I~iwdl~ 402 (479)
|+.+|+.|+|.|. -.+.|.+.+.|-++++||+.
T Consensus 373 HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 373 HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 9999999999841 01468889999999999997
Q ss_pred CC
Q 039302 403 LE 404 (479)
Q Consensus 403 ~~ 404 (479)
..
T Consensus 453 eD 454 (636)
T KOG2394|consen 453 ED 454 (636)
T ss_pred hh
Confidence 54
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-13 Score=120.99 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=161.1
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~ 247 (479)
...+..++|++.- .-+|++..|-.|++|+-+. .....++ .....|.||+|-|.+..
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss----------------------t~pt~Lks~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS----------------------TCPTKLKSVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC----------------------CCCceecchhhcceeEEEeccCCcc
Confidence 3567788999855 5677889999999999776 1112222 23458999999999886
Q ss_pred eEEEEeCCCeEEEEecCCCCcccc----------CCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCce
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNV----------DPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSA 316 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~----------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~ 316 (479)
.|+.|+ -+-|+||.......... ......+| .+|++++|.+++. .+++++ .|..|.|||..++...
T Consensus 155 elavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 155 ELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred eeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcc
Confidence 676666 67899998754322111 11123345 6899999999998 777766 5788999999988532
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
... ....+.+.-+.|+|++ .+|+++.-|+..++|.....-. ...-.- -.+.|....|+|.+..+|++++..-
T Consensus 232 pL~-~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt---~erw~l-gsgrvqtacWspcGsfLLf~~sgsp-- 303 (445)
T KOG2139|consen 232 PLI-PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWT---KERWIL-GSGRVQTACWSPCGSFLLFACSGSP-- 303 (445)
T ss_pred ccc-ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccce---ecceec-cCCceeeeeecCCCCEEEEEEcCCc--
Confidence 222 2345678899999999 7888889999999996544331 222222 3458999999998866667666544
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC----CCeeeEEEeCCCCcEEEEEcCCC
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ----KDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~----~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
++|.+....+...... ...........+++ ......|+ ..+.+++|.|.|.+|.++--...
T Consensus 304 ~lysl~f~~~~~~~~~--~~~~k~~lliaDL~--e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLR--PQSIKRVLLIADLQ--EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred eEEEEeecCCCccccC--cccceeeeeeccch--hhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 4556554432211000 00000000000111 11112231 35889999999987766654443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=122.23 Aligned_cols=233 Identities=18% Similarity=0.255 Sum_probs=166.2
Q ss_pred CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCC---CCeEEEEeCCCeEEEEecCC
Q 039302 190 DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVA---PGRLVSGDCNSCIHLWEPAS 265 (479)
Q Consensus 190 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~---~~~l~sg~~dg~I~lwd~~~ 265 (479)
..|.+.+|++.... ..++-+++ .-...++.|.|..-. .-.|+-+...|.|.++....
T Consensus 44 R~Gkl~Lys~~d~~-------------------~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMK-------------------LSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred eccceEEEeecccc-------------------cCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecc
Confidence 34788999987632 11222221 123467888887432 22567778899999998754
Q ss_pred CCccccCCCCcccCCC---cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEecCCCCEEEEEEcCCCCcEEE
Q 039302 266 DATWNVDPNPFIGHAA---SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLA 341 (479)
Q Consensus 266 ~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~ 341 (479)
... ......+....- ...++.|++.+. .++++-.+|.+.+-+..... ..++..+.|.-.+....|+...++++.
T Consensus 105 ~~s-s~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 105 DES-SVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred cee-eeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence 322 111122222222 245778998888 78888889999965554442 234567899999999999998889999
Q ss_pred EEeCCCeEEEEeCCCCCCCCceEEE-eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccc
Q 039302 342 SGSDDGTFSIHDLRLLKGGDSVVAH-FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQ 420 (479)
Q Consensus 342 sgs~dg~i~iwDlr~~~~~~~~~~~-~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 420 (479)
+||+|+.+..||+|..+. .+.. .+.|...|.+|.-+|..+.+|++|+.|..|++||.++...+
T Consensus 183 tGgDD~~l~~~D~R~p~~---~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP------------- 246 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKT---FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP------------- 246 (339)
T ss_pred ecCCCceEEEEEecCCcc---eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-------------
Confidence 999999999999995442 4443 66799999999999988899999999999999999977532
Q ss_pred cCCCCCCCCceEEeecCCCCeeeEEEeCCCC-cEEEEEcCCCceEEeeecc
Q 039302 421 VNAPEDLPPQLLFIHQGQKDLKELHWHTQVP-GMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 421 ~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~-~ll~s~~~dgi~iw~~~~~ 470 (479)
+|.-.-...|+.+.|||... .+++++-.+|++|.+..+-
T Consensus 247 -----------l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 247 -----------LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred -----------cccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 33333235799999999753 4678888888888887654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=130.92 Aligned_cols=171 Identities=15% Similarity=0.279 Sum_probs=128.6
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-------------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------------- 314 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------------- 314 (479)
-|+.|-.-|.|++.|........+......-.+..|+|+.|-|.+.+.|+++-.+|.+.+||..-..
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 6888888999999988652221100011111247899999999999899999999999999763210
Q ss_pred --------------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 315 --------------SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 315 --------------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
.++..+......|+..+|+|++ .+||+.+.||.++|||..+.. ++..++.--+...||+|+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEEEEc
Confidence 1222333345578999999988 999999999999999999877 666777677889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p 448 (479)
|++ .+|++|++|..|.||.+...+ -+...|.+.+.|+.|+|.|
T Consensus 342 PDG-KyIvtGGEDDLVtVwSf~erR------------------------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDG-KYIVTGGEDDLVTVWSFEERR------------------------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCc-cEEEecCCcceEEEEEeccce------------------------EEEeccccccceeeEeecc
Confidence 965 999999999999999997663 2333444434688898884
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=126.22 Aligned_cols=210 Identities=16% Similarity=0.225 Sum_probs=161.3
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.+.|-.++... ..|.+|-.+|.+.+|....... ...++..+..+ ..+..|.-++..+++
T Consensus 105 ~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~-----------------hss~l~~la~g-~g~~~~r~~~~~p~I 163 (412)
T KOG3881|consen 105 TKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDL-----------------HSSKLIKLATG-PGLYDVRQTDTDPYI 163 (412)
T ss_pred cccccchhhcC---CEEEEEecCCcEEEEeccCCcc-----------------ccccceeeecC-CceeeeccCCCCCce
Confidence 34454444432 3566778999999999885211 12344445444 467888888888878
Q ss_pred EEEEeCC--CeEEEEecCCCCccccCC---CCcccCC--CcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 249 LVSGDCN--SCIHLWEPASDATWNVDP---NPFIGHA--ASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 249 l~sg~~d--g~I~lwd~~~~~~~~~~~---~~~~~h~--~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+++|+.. ..+.|||+.......... ....+-. -.++++.|-+.. .+.||+|+.-+.+++||++.++.|+..+
T Consensus 164 va~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f 243 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF 243 (412)
T ss_pred EecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe
Confidence 8889988 899999998753211000 0011111 235788897761 3389999999999999999998899999
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.-...+|+++...|.+ ++|++|..-|.+..||+|.+.. +...+.+..+.|++|..+|.. .+||++|.|..|+|+|
T Consensus 244 d~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 244 DFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHD 318 (412)
T ss_pred ccccCcceeeeecCCC-cEEEEecccchhheecccCcee---eccccCCccCCcceEEEcCCC-ceEEeeccceeEEEee
Confidence 8889999999999999 9999999999999999999884 444589999999999999955 8999999999999999
Q ss_pred CCCC
Q 039302 401 LSLE 404 (479)
Q Consensus 401 l~~~ 404 (479)
+.+.
T Consensus 319 ~ktr 322 (412)
T KOG3881|consen 319 IKTR 322 (412)
T ss_pred cccc
Confidence 9884
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-13 Score=136.83 Aligned_cols=313 Identities=14% Similarity=0.124 Sum_probs=192.3
Q ss_pred CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCc
Q 039302 91 PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQG 170 (479)
Q Consensus 91 ~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~ 170 (479)
|++-+|+.| +.++.|.||+...+.+. + ..-..+.....-.+
T Consensus 1059 ~~~s~Fvsg-----S~DGtVKvW~~~k~~~~--------------------------------~--~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1059 EHTSLFVSG-----SDDGTVKVWNLRKLEGE--------------------------------G--GSARSELTYSPEGS 1099 (1431)
T ss_pred CCCceEEEe-----cCCceEEEeeehhhhcC--------------------------------c--ceeeeeEEEeccCC
Confidence 566778876 58899999988533210 0 01222234444567
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEEeCCCCCC-
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAIDWNPVAPG- 247 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~~~~~- 247 (479)
.+.++..++.+ ..+|.++.||.|++.+++....... ..........+ ..-|..-++......
T Consensus 1100 r~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~--------------~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1100 RVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKR--------------VATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred ceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccc--------------eeeeeecccccCCCceEEeecccccccce
Confidence 89999999988 6777789999999999987311110 01111111111 123333344433333
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~ 326 (479)
.|+.+...+.|..||++....... ....-..+.|++++.+|.+. .+++|+..|.+.+||+|-+. ++.+. ..+..+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~--lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWR--LKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRV-PILSWEHPARAP 1240 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHh--hhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecCc-eeecccCcccCC
Confidence 788888899999999987543221 22333457899999999998 99999999999999999874 55544 455678
Q ss_pred EEEEEEcCCCC--cEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecC-------------------CCCeEEEEEeCCC
Q 039302 327 VNVISWNRLAS--CLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYH-------------------KHPVTSIEWSPHE 383 (479)
Q Consensus 327 v~~l~~~p~~~--~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h-------------------~~~I~~v~~sp~~ 383 (479)
++.+..+|..+ ...++++ ..+.|.+|++.++.. ...+... .-......+.. .
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~----~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~ 1315 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR----QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-K 1315 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcc----eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-C
Confidence 88888877654 4454444 467899999998863 2222221 11111222322 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChH-H-----------HHHHhhhccc-------------ccCCCCCC-CCc------e
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEE-E-----------EAEFKAKTRE-------------QVNAPEDL-PPQ------L 431 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~-~-----------~~~~~~~~~~-------------~~~~~~~~-p~~------l 431 (479)
..++.+|+.|..|+.||........ . ...+..++.. .......+ +.+ .
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred CceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 4789999999999999998765331 0 0000000000 00000000 000 0
Q ss_pred EEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 432 LFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 432 ~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
...-.+|..|+++++......+|++++.+| |+||+
T Consensus 1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 111123467999999887777999999999 99996
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=149.14 Aligned_cols=232 Identities=22% Similarity=0.298 Sum_probs=152.7
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
+.+..+.+|...|+|+.|...+. ++++|+.|..++||.+.+... .....||.+.+++++.+.++. +++++|.|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~----lAs~rGhs~ditdlavs~~n~-~iaaaS~D~ 254 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARC----LASCRGHSGDITDLAVSSNNT-MIAAASNDK 254 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhh----hccCCCCccccchhccchhhh-hhhhcccCc
Confidence 44556779999999999999998 999999999999999877544 366889999999999998777 899999999
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeC
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp 381 (479)
.|++|-++.+. ++..+.+|.+.|++|+|+|.. +.+.||++++||.|-... ...+.. +. -..-+-++.|..
T Consensus 255 vIrvWrl~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 255 VIRVWRLPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFEN 326 (1113)
T ss_pred eEEEEecCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCC-cc-cccceeeeeccc
Confidence 99999999985 888889999999999999944 778999999999982110 000000 11 112233333433
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhh-h--ccc-ccCCCCCC--------CCceEEeecCCC-CeeeEEEeC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKA-K--TRE-QVNAPEDL--------PPQLLFIHQGQK-DLKELHWHT 448 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~-~--~~~-~~~~~~~~--------p~~l~~~h~g~~-~V~~v~w~p 448 (479)
++ ..++|++.|+.-..|.+.........-.|.. . ... ........ ..++.-..+||. .+..+.+||
T Consensus 327 ~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 327 NG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 22 4444444444444443332210000000000 0 000 00000000 001222223344 588999999
Q ss_pred CCCcEEEEEcCCC-ceEEeeecc
Q 039302 449 QVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 449 ~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
-.+.+..+++.|| ..||+.+..
T Consensus 406 fn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccC
Confidence 9999999999999 899998754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-13 Score=123.90 Aligned_cols=251 Identities=14% Similarity=0.167 Sum_probs=179.5
Q ss_pred CcceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
...|..+.|.-++. .++..++.+-.+..+.+....-.. ....+.+.......|..++... +
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s---------------~~~~~~~~~l~~~~I~gl~~~d---g 116 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS---------------SLDDAKTVSLGTKSIKGLKLAD---G 116 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcccc---------------ccccccccccccccccchhhcC---C
Confidence 34566677776553 345454567777777776632111 0112223444556677666543 4
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC--CcEEEEEcCCCCceeeEEecC--
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD--GNIAIWDTRVGKSALMSFKAH-- 323 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--g~I~iwD~~~~~~~~~~~~~h-- 323 (479)
.|++|..+|.+.+|....+.........+.. ...+..+.-++..++++|+|+.. ..+.|||+.+.+ .+.+-+.-
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpn 194 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPN 194 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCC
Confidence 8999999999999998754321111122222 35677888888888889999998 899999999873 33222111
Q ss_pred -------CCCEEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 324 -------NADVNVISWNRL--ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 324 -------~~~v~~l~~~p~--~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
.-.++.+.|-+. . +.||+++.-+.+++||.+.++. |+..|..-..+|+++...|. ++++++|..-+
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRR---PV~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g 269 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRR---PVAQFDFLENPISSTGLTPS-GNFIYTGNTKG 269 (412)
T ss_pred ccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCc---ceeEeccccCcceeeeecCC-CcEEEEecccc
Confidence 124677888776 4 7899999999999999998876 99999999999999999995 49999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+..+|++...- +.....|.. .|++++-||+.+ +++|||-|. |+|++..+
T Consensus 270 ~l~~FD~r~~kl------------------------~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 270 QLAKFDLRGGKL------------------------LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred hhheecccCcee------------------------eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 999999998741 111123333 699999999997 999999998 89988765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=138.68 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=145.1
Q ss_pred CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEE
Q 039302 274 NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNADVNVISWNRLA-SCLLASGSDDGTFSI 351 (479)
Q Consensus 274 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~i 351 (479)
..+.||++.|+++.|+.+|. +|++||.|-.+.|||.-..+ ++..+ .+|...|.++.|-|.. ..++++|+.|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC-EEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45889999999999999999 99999999999999998665 45554 7899999999998854 358899999999999
Q ss_pred EeCCCCCCC------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCC
Q 039302 352 HDLRLLKGG------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPE 425 (479)
Q Consensus 352 wDlr~~~~~------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 425 (479)
||+...+.. ..+...+..|...|-.|+-.|.++..|.++++||+|+-+|++..... .-..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c--------------~p~~ 187 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC--------------NPDE 187 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC--------------Cccc
Confidence 999864321 13556677799999999999988899999999999999999875310 0011
Q ss_pred CCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccCCCCC
Q 039302 426 DLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQSTLP 475 (479)
Q Consensus 426 ~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~~~~~ 475 (479)
..+..+...+..-...+++..+|+.+.+|+.|+.+- .++|+...+.++.+
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence 223333333332246889999999999999999887 78888655544433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-13 Score=122.45 Aligned_cols=249 Identities=17% Similarity=0.268 Sum_probs=159.4
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+|....+...-..++..++|+|+|++++.+...+-.|.||.+.+. ....+..-...+.
T Consensus 80 Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----------------------~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 80 QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----------------------KGYLLPHPKTNVK 137 (447)
T ss_pred cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----------------------eeEEecccccCce
Confidence 344444455556789999999999999999999999999999872 1222333334668
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.++|+|+++ +.+.++.-...-..++..-+.|.. ...+.-.+-..+.|.|+|+|. .+| +||.--.- .+
T Consensus 138 g~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~l-l~~f~~dT~DltgieWsPdg~-~la---------Vwd~~Ley-kv 204 (447)
T KOG4497|consen 138 GYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWIL-LKEFKLDTIDLTGIEWSPDGN-WLA---------VWDNVLEY-KV 204 (447)
T ss_pred eEEECCCCc-eeeeeecccHHHHHHHHhhHHHHH-HHhcCCCcccccCceECCCCc-EEE---------Eecchhhh-ee
Confidence 899999997 666665432222222222122222 233444556678899999987 554 56643221 12
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------------------
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG------------------------------------- 360 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~------------------------------------- 360 (479)
..+. ..-++..++|+|.+ .+|+.|+.|+.++|.+--+.+.-
T Consensus 205 ~aYe-~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~ 282 (447)
T KOG4497|consen 205 YAYE-RGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT 282 (447)
T ss_pred eeee-eccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence 2222 23568899999988 89999999998887643221110
Q ss_pred -------------------CceEEEee------cCCCCeEEEEEeCCCCCEEEEEeC--CCcEEEEECCCCCChHHHHHH
Q 039302 361 -------------------DSVVAHFE------YHKHPVTSIEWSPHEGSTLAVSSA--DNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 361 -------------------~~~~~~~~------~h~~~I~~v~~sp~~~~~las~s~--Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
...+..++ .....+.-++|+++. .++||-.. -+.+-+||++..+--
T Consensus 283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~------ 355 (447)
T KOG4497|consen 283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLH------ 355 (447)
T ss_pred ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhh------
Confidence 00011111 123346678999954 77777543 357999999876311
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.-++. ..+|..+.|+|..+.+++.++...+.+|.+.-
T Consensus 356 ---------------avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 356 ---------------AVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred ---------------hhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 11112 23699999999999999998888899997753
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-11 Score=110.77 Aligned_cols=170 Identities=21% Similarity=0.221 Sum_probs=123.3
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE-EeC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS-CSV 301 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-~s~ 301 (479)
..++.++. ...+|.++.+.++ +|++.- .+.|.||...+.-....... .......+.+++-+- +..+||. |-.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~e-t~~NPkGlC~~~~~~-~k~~LafPg~k 157 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIE-TRSNPKGLCSLCPTS-NKSLLAFPGFK 157 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeee-cccCCCceEeecCCC-CceEEEcCCCc
Confidence 56666664 4679999999874 566655 67999999875322111011 111122233333222 2224443 345
Q ss_pred CCcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEeec--CCCCeEEE
Q 039302 302 DGNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFEY--HKHPVTSI 377 (479)
Q Consensus 302 dg~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v 377 (479)
-|.|+|-|+...+. +...+.+|.+.|.|++.+.+| .++||+|..|+ |+|||.+++. ++..++- ....|.+|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~----~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGT----LLQELRRGVDRADIYCI 232 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCc----EeeeeecCCchheEEEE
Confidence 69999999987753 346789999999999999999 99999999996 7999999998 7777764 45679999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|||+. .+||++|.-|+|+|+.++...
T Consensus 233 aFSp~~-s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 233 AFSPNS-SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence 999955 999999999999999998643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=132.85 Aligned_cols=259 Identities=15% Similarity=0.218 Sum_probs=184.9
Q ss_pred EecCCcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 165 KVAHQGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.-+|...|....|.|+. ..-+++++.||.|++=.+.... .......+..|.++|..++.-|
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------~~e~t~rl~~h~g~vhklav~p 242 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------YVENTKRLAPHEGPVHKLAVEP 242 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeecccc------------------ceecceecccccCccceeeecC
Confidence 34789999999999965 4567888999999987775521 1222455677999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC---cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA---SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----- 315 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----- 315 (479)
..+..|.|++.|+.+.-+|++......... .-..+.. ...+|+.+|...+.|++++.|-.+++||.|.-..
T Consensus 243 ~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 243 DSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred CCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc
Confidence 999899999999999999997754322111 1122233 5788999999999999999999999999986532
Q ss_pred eeeEEe------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--------CceEEE-eecCCCC--eEEEE
Q 039302 316 ALMSFK------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--------DSVVAH-FEYHKHP--VTSIE 378 (479)
Q Consensus 316 ~~~~~~------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--------~~~~~~-~~~h~~~--I~~v~ 378 (479)
.+..+. .....|++++|+.+++.+ ++...|-.|+++.-..+... ...+.. +++|... |-.+-
T Consensus 322 ~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl-LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN 400 (559)
T KOG1334|consen 322 VLDKFCPHHLVEDDPVNITGLVYSHDGSEL-LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN 400 (559)
T ss_pred hhhhcCCccccccCcccceeEEecCCccce-eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceee
Confidence 122221 234569999999888444 44556778899843322210 012333 7888754 55565
Q ss_pred E-eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEE
Q 039302 379 W-SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 379 ~-sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s 456 (479)
| -|. ..++++||.-|.|.||+-...+ ++..-.|. .-|+||.=||..| +|||
T Consensus 401 FfGPr-sEyVvSGSDCGhIFiW~K~t~e-------------------------ii~~MegDr~VVNCLEpHP~~P-vLAs 453 (559)
T KOG1334|consen 401 FFGPR-SEYVVSGSDCGHIFIWDKKTGE-------------------------IIRFMEGDRHVVNCLEPHPHLP-VLAS 453 (559)
T ss_pred eccCc-cceEEecCccceEEEEecchhH-------------------------HHHHhhcccceEeccCCCCCCc-hhhc
Confidence 4 564 4899999999999999987763 22222221 2699999999999 8888
Q ss_pred EcCCC-ceEEeeecc
Q 039302 457 TAADG-FNILMPSNI 470 (479)
Q Consensus 457 ~~~dg-i~iw~~~~~ 470 (479)
+|-+. |+||.+..-
T Consensus 454 SGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTA 468 (559)
T ss_pred cCCccceeeecCCcc
Confidence 88888 999998443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-12 Score=115.31 Aligned_cols=188 Identities=17% Similarity=0.212 Sum_probs=140.5
Q ss_pred cEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEE
Q 039302 183 HICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHL 260 (479)
Q Consensus 183 ~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~l 260 (479)
.|+|..+.+ ..++++++.. ...+..+. ...+|.++.++.+ +|+++-.+ .|+|
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk---------------------~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee-~IyI 110 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKK---------------------KTTICEIF-FPTSILAVRMNRK---RLVVCLEE-SIYI 110 (391)
T ss_pred ceeEEEecCCCceEEEEEccc---------------------CceEEEEe-cCCceEEEEEccc---eEEEEEcc-cEEE
Confidence 344444433 3488888876 33333332 3458999999764 77777755 5999
Q ss_pred EecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCc
Q 039302 261 WEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC 338 (479)
Q Consensus 261 wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 338 (479)
||+++...... ......+...+.++.+++.+. ++|-= ...|.|.|||+.+.+ ++..+.+|.+.+.+++|+++| .
T Consensus 111 ydI~~MklLhT-I~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G-~ 186 (391)
T KOG2110|consen 111 YDIKDMKLLHT-IETTPPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDG-T 186 (391)
T ss_pred Eecccceeehh-hhccCCCccceEeeccCCCCc-eEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCC-C
Confidence 99988655332 122334556677777777666 55542 246899999999886 788899999999999999999 9
Q ss_pred EEEEEeCCCe-EEEEeCCCCCCCCceEEEeecCC--CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 339 LLASGSDDGT-FSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 339 ~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~h~--~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|||+++.|+ |||+.+.+++ .+..|+--. ..|.+++|+|+. .+|++.|..++|+||.|....
T Consensus 187 llATASeKGTVIRVf~v~~G~----kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 187 LLATASEKGTVIRVFSVPEGQ----KLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEeccCceEEEEEEcCCcc----EeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence 9999999996 7899999888 688886433 358899999965 899999999999999997653
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=123.06 Aligned_cols=286 Identities=20% Similarity=0.299 Sum_probs=205.3
Q ss_pred CCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 157 GTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 157 ~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
.+|.+..+..||...|+....-|..+.+ .+.+.|.+|+||--..... .-|-. ......++
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv-~~~s~drtvrv~lkrds~q------------------~wpsI-~~~mP~~~ 71 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGV-ISVSEDRTVRVWLKRDSGQ------------------YWPSI-YHYMPSPC 71 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCe-EEccccceeeeEEeccccc------------------cCchh-hhhCCCCc
Confidence 3778878889999999999999977545 4779999999996544111 11111 11124588
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC---
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG--- 313 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~--- 313 (479)
.++.+.+... +|+.|-..|++.-+.+...-......+.+..|...|..+-|+-... .+++++.|+.+.---.+.+
T Consensus 72 ~~~~y~~e~~-~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 72 SAMEYVSESR-RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred eEeeeeccce-EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcc
Confidence 9999999887 9999999999998877553332333466778889999888887666 6777766655432211110
Q ss_pred -------------------------------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 314 -------------------------------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 314 -------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
-.++..+.+|...+.+++|.+.. .+|.+|..|..+.+||+--
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccC
Confidence 12455678899999999999988 8999999999999999987
Q ss_pred CCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH---------------HHHhh------
Q 039302 357 LKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE---------------AEFKA------ 415 (479)
Q Consensus 357 ~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~---------------~~~~~------ 415 (479)
... ....+.+|...|..+..-+.- ..|.+++.||.|.+|+++....+..+ ..++.
T Consensus 229 ~~g---~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~ 304 (404)
T KOG1409|consen 229 RKG---TAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQ 304 (404)
T ss_pred Ccc---eeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhh
Confidence 765 677888999999999887755 89999999999999999876432111 00000
Q ss_pred -----hccc-------------------------------ccCCCCC-CCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 416 -----KTRE-------------------------------QVNAPED-LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 416 -----~~~~-------------------------------~~~~~~~-~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
+..+ ......+ -++.|...|..+..|+.+++.... ++|+++|
T Consensus 305 ~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetl-glLvTsG 383 (404)
T KOG1409|consen 305 LGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETL-GLLVTSG 383 (404)
T ss_pred hhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhc-cceeecC
Confidence 0000 0000112 233466778888899999998877 5888888
Q ss_pred CCC-ceEEeeecc
Q 039302 459 ADG-FNILMPSNI 470 (479)
Q Consensus 459 ~dg-i~iw~~~~~ 470 (479)
.|. |+||++.++
T Consensus 384 ~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 384 TDRVIKIWDVRSV 396 (404)
T ss_pred CceEEEEEechhh
Confidence 888 899999887
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-13 Score=117.43 Aligned_cols=152 Identities=25% Similarity=0.445 Sum_probs=105.1
Q ss_pred EEEEeCCCCCCeEEEEeC---------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcE
Q 039302 237 YAIDWNPVAPGRLVSGDC---------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNI 305 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I 305 (479)
-.|.|++.|..+++.... -|...||.++....... ...+ ...++|.+++|+|++. .||++ ..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-~i~l-~~~~~I~~~~WsP~g~-~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-SIEL-KKEGPIHDVAWSPNGN-EFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-eeec-cCCCceEEEEECcCCC-EEEEEEccCCccc
Confidence 368899999844444441 23456666644332111 1112 2345799999999998 55443 467899
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~---dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.|||++.. .+..+ +...++.|.|+|+| ++|++|+. .|.|.+||+++.+ .+..+. | ..++.++|+|+
T Consensus 86 ~lyd~~~~--~i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~-~-~~~t~~~WsPd 154 (194)
T PF08662_consen 86 TLYDVKGK--KIFSF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK----KISTFE-H-SDATDVEWSPD 154 (194)
T ss_pred EEEcCccc--EeEee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE----Eeeccc-c-CcEEEEEEcCC
Confidence 99999732 44444 35678999999999 77777764 4679999999766 666654 3 35789999996
Q ss_pred CCCEEEEEeC------CCcEEEEECCC
Q 039302 383 EGSTLAVSSA------DNQLTIWDLSL 403 (479)
Q Consensus 383 ~~~~las~s~------Dg~I~iwdl~~ 403 (479)
+ ++|++++. |+.++||++..
T Consensus 155 G-r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 155 G-RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred C-CEEEEEEeccceeccccEEEEEecC
Confidence 6 77777654 88999999864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-12 Score=125.18 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=125.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..+...+...+|+|+|..++.+.. .+..|++|++... ..+.+..+.+ .+.+++|+
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-------------------~~~~l~~~~~---~~~~~~~S 251 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------------------AVRQVASFPR---HNGAPAFS 251 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-------------------CeEEccCCCC---CcCCeEEC
Confidence 3456778999999999965554432 2357899998651 1122222333 34468999
Q ss_pred CCCCCeEEE-EeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEE--EcCCCCce
Q 039302 243 PVAPGRLVS-GDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIW--DTRVGKSA 316 (479)
Q Consensus 243 ~~~~~~l~s-g~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iw--D~~~~~~~ 316 (479)
|++. .|+. .+.+| .|++||+.++... .+..+...+....|+|+++ .|+.++. ++...|| |+.++.
T Consensus 252 PDG~-~La~~~~~~g~~~I~~~d~~tg~~~-----~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~-- 322 (429)
T PRK03629 252 PDGS-KLAFALSKTGSLNLYVMDLASGQIR-----QVTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGA-- 322 (429)
T ss_pred CCCC-EEEEEEcCCCCcEEEEEECCCCCEE-----EccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCC--
Confidence 9998 6664 34455 5889999765432 2333345678899999999 5555554 4555555 555543
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
...+..+........|+|++ .+|+..+ .++ .|.+||+.++. ...+.. .....+..|+|++ .+|+.++.+
T Consensus 323 ~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~ 394 (429)
T PRK03629 323 PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG-----VQVLTD-TFLDETPSIAPNG-TMVIYSSSQ 394 (429)
T ss_pred eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCC-----eEEeCC-CCCCCCceECCCC-CEEEEEEcC
Confidence 33333344456678999999 5555544 333 58889988765 223322 1234568899966 777777776
Q ss_pred Cc---EEEEECCC
Q 039302 394 NQ---LTIWDLSL 403 (479)
Q Consensus 394 g~---I~iwdl~~ 403 (479)
+. +.++++..
T Consensus 395 ~~~~~l~~~~~~G 407 (429)
T PRK03629 395 GMGSVLNLVSTDG 407 (429)
T ss_pred CCceEEEEEECCC
Confidence 64 66777743
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=113.29 Aligned_cols=217 Identities=18% Similarity=0.304 Sum_probs=142.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|+|++|-|.+..-||.|+..| |.||......+.......... ....+....+| .+|+.|.|++++. .
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~-------~~~qvl~~pgh-~pVtsmqwn~dgt-~ 209 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMST-------HHLQVLQDPGH-NPVTSMQWNEDGT-I 209 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccc-------cchhheeCCCC-ceeeEEEEcCCCC-E
Confidence 468999999999888888877754 999998764332211100000 11223444566 5899999999997 8
Q ss_pred EEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
|++++. |..|.|||+.++..... .. .-.+.+.-+.|||++. +|.+++.|+..++|.......+. ......+.|
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL--~~--~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~e-rw~lgsgrv 283 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPL--IP--KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKE-RWILGSGRV 283 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccc--cc--cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceec-ceeccCCce
Confidence 888775 56899999998765332 11 2246788999999999 88888999999999655443222 223334589
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC-----------ceEEEee------c---CCCCeEEEEEeCCCCCEE
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD-----------SVVAHFE------Y---HKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~-----------~~~~~~~------~---h~~~I~~v~~sp~~~~~l 387 (479)
...+|+|.|..+|++.+..- ++|.+....... .++..+. + -.+++.+++|.|.+ .+|
T Consensus 284 qtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyL 360 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYL 360 (445)
T ss_pred eeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEE
Confidence 99999999977777776544 444443221100 0111111 1 24678899999966 788
Q ss_pred EEEeCCC--------cEEEEECCCC
Q 039302 388 AVSSADN--------QLTIWDLSLE 404 (479)
Q Consensus 388 as~s~Dg--------~I~iwdl~~~ 404 (479)
|+.-..+ .|.+||.+..
T Consensus 361 av~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 361 AVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEEEcCCchhhhhhhhhhhhccccc
Confidence 8765432 3566777654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-13 Score=121.66 Aligned_cols=230 Identities=17% Similarity=0.233 Sum_probs=154.5
Q ss_pred CCcceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCccccccccccc--C------------CCCCccccCCCcEEe-cC
Q 039302 168 HQGCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVA--G------------HGAPQVLNQSPLVKF-GG 231 (479)
Q Consensus 168 H~~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~-~~ 231 (479)
-...|+.++|.+++. ..+...+.|.+|++|.+.............. . ..........|...+ .+
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 356799999999872 3334448899999999876433221100000 0 000000112233332 36
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cccC--CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVD--PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
|.--|.++.++.+.. .+++++ |-.|.+|++.-... ..+. ...+..-+.-|++..|+|...++|+-.+..|+|++
T Consensus 163 HtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 788899999999998 888877 88999999865332 1111 12233334568899999999999999999999999
Q ss_pred EEcCCCCceee---EE------------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC
Q 039302 308 WDTRVGKSALM---SF------------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH 372 (479)
Q Consensus 308 wD~~~~~~~~~---~~------------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~ 372 (479)
.|+|....|-. .+ ..--..|..+.|++.| +++++-.. -+|++||+..... ++.++..|..
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~---pv~t~~vh~~ 315 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAK---PVETYPVHEY 315 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCC---cceEEeehHh
Confidence 99996421110 01 1112357889999999 88887543 6999999966554 7888777642
Q ss_pred ------------Ce---EEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 373 ------------PV---TSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 373 ------------~I---~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.| ..++|+-++ .+++|||..+.++++++..+.
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCc
Confidence 22 357898755 899999999999999976653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-12 Score=121.84 Aligned_cols=246 Identities=9% Similarity=0.071 Sum_probs=147.8
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE-eCCCeEEEEe
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG-DCNSCIHLWE 262 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg-~~dg~I~lwd 262 (479)
+.++...++.|++|++.... ....+.++. +......++++|+++ +|+++ ..++.|.+|+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g------------------~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~ 63 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEG------------------ALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYR 63 (330)
T ss_pred EEEEcCCCCCEEEEEECCCC------------------ceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEE
Confidence 44555778999999996410 123344443 334567899999998 76555 4588999999
Q ss_pred cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCCCcE
Q 039302 263 PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
+...+..... ... ...+....++|+|+++.++++...++.|.+|++..... .+..+ .+......++++|++..+
T Consensus 64 ~~~~g~l~~~-~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 64 IADDGALTFA-AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTL 140 (330)
T ss_pred ECCCCceEEe-eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEE
Confidence 9743322111 111 12234678999999994444455689999999974321 12222 233456778999999556
Q ss_pred EEEEeCCCeEEEEeCCCCCCCC---ceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCCChHHHHHHhh
Q 039302 340 LASGSDDGTFSIHDLRLLKGGD---SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA-DNQLTIWDLSLEKDEEEEAEFKA 415 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~---~~~~~~~~h~~~I~~v~~sp~~~~~las~s~-Dg~I~iwdl~~~~~~~~~~~~~~ 415 (479)
+++...++.|.+||+....... ........ ......+.|+|++ .+|+++.. +++|.+|++.......+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~------ 212 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIE------ 212 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEE------
Confidence 6777778999999998643100 00111222 2345789999966 66666655 99999999974311000
Q ss_pred hcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 416 KTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 416 ~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
........|.. ..+.....+++++|++..++++...++ |.+|++.
T Consensus 213 ----~~~~~~~~p~~----~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 213 ----CVQTLDMMPAD----FSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred ----EEEEEecCCCc----CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 00000000000 001123457899999987777655444 8888874
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-12 Score=127.36 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=126.5
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+.+.+|+|++. .|+..+.. ..|.+||+.++.... +....+.+....|+|+++.++++.+.+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-----l~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-----VANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred eEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-----eecCCCCccceEECCCCCEEEEEEccCC
Confidence 44556777899999999998 77766532 369999998764322 2222345568899999985555677888
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
...||.+.........+..+........|+|++..+++++..+|...||.+..... ....+..+........|+|++
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---~~~~lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRVTFTGSYNTSPRISPDG 339 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---ceEEEecCCCCcCceEECCCC
Confidence 87777654322234445555555677899999944444444456667776543221 122222233345578999966
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 384 GSTLAVSSADN---QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 384 ~~~las~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
.+|+..+.++ .|.+||+..... ..+. .. .......|+|++..+++++..+
T Consensus 340 -~~Ia~~s~~~g~~~I~v~d~~~g~~-----------------------~~lt-~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 340 -KLLAYISRVGGAFKLYVQDLATGQV-----------------------TALT-DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -CEEEEEEccCCcEEEEEEECCCCCe-----------------------EEcc-CC--CCccCceECCCCCEEEEEEecC
Confidence 7776666544 699999976531 1111 11 2346789999998777777666
Q ss_pred Cc
Q 039302 461 GF 462 (479)
Q Consensus 461 gi 462 (479)
|.
T Consensus 393 g~ 394 (427)
T PRK02889 393 GR 394 (427)
T ss_pred CC
Confidence 63
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=125.19 Aligned_cols=195 Identities=11% Similarity=0.091 Sum_probs=130.7
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 225 ~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
....+..|...+...+|+|++. .|+..+. +..|.+||+.++... .+..+.+.+....|+|+++.++++.+.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-----~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-----LVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-----EeecCCCcccCcEECCCCCEEEEEEec
Confidence 3355667788999999999998 7777653 468999999775432 233455667788999999855567776
Q ss_pred CCc--EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 302 DGN--IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 302 dg~--I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
++. |.+||+.++. ...+..+.......+|+|++ ..|+..+ .+| .|++||+.... ...+..+...+..
T Consensus 267 ~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~-----~~~lt~~~~~~~~ 338 (435)
T PRK05137 267 GGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSN-----PRRISFGGGRYST 338 (435)
T ss_pred CCCceEEEEECCCCc--eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCC-----eEEeecCCCcccC
Confidence 766 6677887764 34455566666789999999 5555554 344 68888876544 3334434556778
Q ss_pred EEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 377 IEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 377 v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
..|+|++ ..|+..+.+ ..|.+||+..... .+ .... ..+....|+|++..+
T Consensus 339 ~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----------------------~~-lt~~--~~~~~p~~spDG~~i 391 (435)
T PRK05137 339 PVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----------------------RI-LTSG--FLVEGPTWAPNGRVI 391 (435)
T ss_pred eEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----------------------Ee-ccCC--CCCCCCeECCCCCEE
Confidence 8999976 666655443 3677888754321 11 1121 246788999999877
Q ss_pred EEEEcCC
Q 039302 454 IVSTAAD 460 (479)
Q Consensus 454 l~s~~~d 460 (479)
++++...
T Consensus 392 ~~~~~~~ 398 (435)
T PRK05137 392 MFFRQTP 398 (435)
T ss_pred EEEEccC
Confidence 6666543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-12 Score=127.50 Aligned_cols=256 Identities=13% Similarity=0.139 Sum_probs=169.3
Q ss_pred EEEecCCcceeEEEEecCCC--cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNP--HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~--~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
..+.+|...+..+.+.|... .++.+++.+|.|++||... ...+.++..+. ++.++.
T Consensus 51 ~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~---------------------~~Llkt~~~~~-~v~~~~ 108 (792)
T KOG1963|consen 51 TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD---------------------GELLKTFDNNL-PVHALV 108 (792)
T ss_pred hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC---------------------cEEEEEEecCC-ceeEEE
Confidence 36778999999999999876 5667899999999999987 44555554322 344444
Q ss_pred eCCCCCC--eEE-EEeCC------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 241 WNPVAPG--RLV-SGDCN------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 241 ~s~~~~~--~l~-sg~~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
+.|.--. .++ .+..+ +.++-+.+.+..... ......|.. -.+|.+++.+. +.+. -.+..+
T Consensus 109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~--~d~~~~~~~-~~~I~~~~~ge-~~~i-~~~~~~ 183 (792)
T KOG1963|consen 109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK--GDFLKEHQE-PKSIVDNNSGE-FKGI-VHMCKI 183 (792)
T ss_pred echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccc--hhhhhhhcC-CccEEEcCCce-EEEE-EEeeeE
Confidence 3221100 111 11111 122222221110000 111222322 46778888886 4444 446679
Q ss_pred EEEEcCCCCceeeE---EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMS---FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~---~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.+|........... -..|.-.+++.+++|.+ .++|+|..||.|.+|.--...........+..|...|++++|+++
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD 262 (792)
T ss_pred EEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence 99998874311111 13466678999999999 999999999999999644312212356778999999999999996
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCc
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGF 462 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi 462 (479)
+ .+|.+||..+.+.+|.+.+++. +.+-.- ...|..+.|+|++....+..+++.|
T Consensus 263 G-~~LlSGG~E~VLv~Wq~~T~~k-----------------------qfLPRL--gs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 263 G-AYLLSGGREGVLVLWQLETGKK-----------------------QFLPRL--GSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred C-ceEeecccceEEEEEeecCCCc-----------------------cccccc--CCeeEEEEEcCCCCeEEEEecCceE
Confidence 5 9999999999999999998852 222222 2679999999999877777777779
Q ss_pred eEEeeeccCC
Q 039302 463 NILMPSNIQS 472 (479)
Q Consensus 463 ~iw~~~~~~~ 472 (479)
.+.+..++..
T Consensus 317 ~li~~~dl~~ 326 (792)
T KOG1963|consen 317 HLIKASDLEI 326 (792)
T ss_pred EEEeccchhh
Confidence 9999877743
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-12 Score=125.49 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=125.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..|...+...+|+|++..++.+... ...|++||+.. ++. ..+..+.+...+++|+
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT---------------------GQR-ELVASFRGINGAPSFS 256 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC---------------------CCE-EEeccCCCCccCceEC
Confidence 44677889999999999555544322 34699999876 221 2222333445578999
Q ss_pred CCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCc--EEEEEcCCCCcee
Q 039302 243 PVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGN--IAIWDTRVGKSAL 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~--I~iwD~~~~~~~~ 317 (479)
|++...+++.+.+| .|++||+.++.. ..+..+.......+|+|+++ .|+.++ .+|. |.++|+.++. .
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~--~ 328 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS--A 328 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCe-----EECccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC--e
Confidence 99983334555555 599999977543 22344445556789999998 555554 4555 5666666654 2
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCC-C--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-C
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDD-G--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA-D 393 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~-D 393 (479)
..+..+.......+|+|++ ..|+..+.+ + .|.+||+.++. .. .+. +........|+|++ .+|+..+. .
T Consensus 329 ~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~----~~-~Lt-~~~~~~~p~~spdG-~~i~~~s~~~ 400 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGS----VR-TLT-PGSLDESPSFAPNG-SMVLYATREG 400 (433)
T ss_pred EEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCC----eE-ECC-CCCCCCCceECCCC-CEEEEEEecC
Confidence 2232233445578999999 566554433 3 69999997765 22 333 23345678999976 65555544 2
Q ss_pred --CcEEEEECCC
Q 039302 394 --NQLTIWDLSL 403 (479)
Q Consensus 394 --g~I~iwdl~~ 403 (479)
+.|.++++..
T Consensus 401 g~~~L~~~~~~g 412 (433)
T PRK04922 401 GRGVLAAVSTDG 412 (433)
T ss_pred CceEEEEEECCC
Confidence 3567777743
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=114.76 Aligned_cols=151 Identities=18% Similarity=0.397 Sum_probs=105.0
Q ss_pred EEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCceeeEEec-CCCCEEEEEEcCCCCcEEE-EEeCCCeEEEE
Q 039302 284 EDLQWSPTESDVFASCSV---------DGNIAIWDTRVGKSALMSFKA-HNADVNVISWNRLASCLLA-SGSDDGTFSIH 352 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~-sgs~dg~i~iw 352 (479)
..+.|+|.|..+++.... -|...||-++....+...+.- ..++|..++|+|++..+++ +|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999866665552 134666666554444444433 3456999999999944433 35567899999
Q ss_pred eCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC
Q 039302 353 DLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP 429 (479)
Q Consensus 353 Dlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 429 (479)
|++ .. ++..+. ...++.|.|+|++ ++|++++.+ |.|.+||++...
T Consensus 89 d~~-~~----~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~------------------------ 136 (194)
T PF08662_consen 89 DVK-GK----KIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK------------------------ 136 (194)
T ss_pred cCc-cc----EeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE------------------------
Confidence 997 33 566664 5788999999966 888887754 569999998652
Q ss_pred ceEEeecCCCCeeeEEEeCCCCcEEEEEc------CCCceEEeee
Q 039302 430 QLLFIHQGQKDLKELHWHTQVPGMIVSTA------ADGFNILMPS 468 (479)
Q Consensus 430 ~l~~~h~g~~~V~~v~w~p~~~~ll~s~~------~dgi~iw~~~ 468 (479)
.+.... +..++.++|+|+|.++++++. +.|++||+..
T Consensus 137 -~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 -KISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -Eeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 232222 346899999999997777765 3458888864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-11 Score=121.98 Aligned_cols=201 Identities=15% Similarity=0.108 Sum_probs=125.7
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEe---CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGD---CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG- 303 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg- 303 (479)
.+..+...+...+|+|++. .|+..+ .+..|.+|++.++.... ...+.++ +..+.|+|+++.++++.+.+|
T Consensus 193 ~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~---~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ--VASFPRH---NGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred EeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCC---cCCeEECCCCCEEEEEEcCCCC
Confidence 3445667899999999998 776543 24579999997754322 1223333 446899999994444555555
Q ss_pred -cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEE--eCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 -NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIH--DLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 -~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iw--Dlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|.+||+.++. ...+..+...+....|+|++ ..|+..+. ++...|| |+..+. ...+..+...+....|
T Consensus 267 ~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 267 LNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADV 338 (429)
T ss_pred cEEEEEECCCCC--EEEccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCC-----eEEeecCCCCccCEEE
Confidence 48889998764 33444445567889999999 55555554 4544555 665443 3334444555678999
Q ss_pred eCCCCCEEEEEeC-C--CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 380 SPHEGSTLAVSSA-D--NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 380 sp~~~~~las~s~-D--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+|++ ..|+..+. + ..|.+||+..... ..+. .. .......|+|++..++++
T Consensus 339 SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----------------------~~Lt--~~-~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 339 SSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----------------------QVLT--DT-FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred CCCC-CEEEEEEccCCCceEEEEECCCCCe-----------------------EEeC--CC-CCCCCceECCCCCEEEEE
Confidence 9976 66655543 3 3578888876531 1111 11 123467899999877776
Q ss_pred EcCCCceEEeeec
Q 039302 457 TAADGFNILMPSN 469 (479)
Q Consensus 457 ~~~dgi~iw~~~~ 469 (479)
+.+.+..++.+.+
T Consensus 392 s~~~~~~~l~~~~ 404 (429)
T PRK03629 392 SSQGMGSVLNLVS 404 (429)
T ss_pred EcCCCceEEEEEE
Confidence 6655544444433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-12 Score=125.94 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=128.2
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+.+.+|+|++. .|+..+. ...|++|++.++.... +....+...+..|+|+++.++++.+.+|
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-----l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-----VASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred eEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-----eccCCCCccCceECCCCCEEEEEEeCCC
Confidence 44556677899999999998 7777663 3479999997654322 2223334557899999985556666666
Q ss_pred --cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCe--EEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDGT--FSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
.|.+||+.++. +..+..+.......+|+|++ ..|+.++ .+|. |+++|+..+. ...+..+......++
T Consensus 271 ~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~-----~~~lt~~g~~~~~~~ 342 (433)
T PRK04922 271 NPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGS-----AERLTFQGNYNARAS 342 (433)
T ss_pred CceEEEEECCCCC--eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCC-----eEEeecCCCCccCEE
Confidence 59999998764 34455555555778999999 5555544 4554 6666766544 222323344456789
Q ss_pred EeCCCCCEEEEEeCC-C--cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 379 WSPHEGSTLAVSSAD-N--QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 379 ~sp~~~~~las~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
|+|++ ..|+..+.+ + .|.+||+..... . ...+. .......|+|++..+++
T Consensus 343 ~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----------------------~-~Lt~~--~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 343 VSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----------------------R-TLTPG--SLDESPSFAPNGSMVLY 395 (433)
T ss_pred ECCCC-CEEEEEECCCCceeEEEEECCCCCe-----------------------E-ECCCC--CCCCCceECCCCCEEEE
Confidence 99976 666655433 3 689999876531 1 11122 13456799999987766
Q ss_pred EEcCCC---ceEEee
Q 039302 456 STAADG---FNILMP 467 (479)
Q Consensus 456 s~~~dg---i~iw~~ 467 (479)
+...++ |.++.+
T Consensus 396 ~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 396 ATREGGRGVLAAVST 410 (433)
T ss_pred EEecCCceEEEEEEC
Confidence 665544 444444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-11 Score=121.28 Aligned_cols=203 Identities=13% Similarity=0.074 Sum_probs=130.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..|.+.+...+|+|++..++.+.. .+..|++||+.. +.. ..+..+.+.+.+.+|
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET---------------------GQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC---------------------CcE-EEeecCCCcccCcEE
Confidence 35578889999999999965554432 246899999976 222 234445567778999
Q ss_pred CCCCCCeEEEEeCCCe--EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCC--cEEEEEcCCCCce
Q 039302 242 NPVAPGRLVSGDCNSC--IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDG--NIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg--~I~iwD~~~~~~~ 316 (479)
+|++..++++.+.++. |++||+.++.. ..+..+.......+|+|+++ .++..+ .+| .|.++|+..+.
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~-- 325 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN-- 325 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCce-----EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC--
Confidence 9999833446666665 77778866543 22444555667889999998 555554 344 57788877653
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA- 392 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~- 392 (479)
...+..+...+....|+|++ ..|+..+.+ ..|.+||+.... ...+. ....+..+.|+|++ +.|+..+.
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~-----~~~lt-~~~~~~~p~~spDG-~~i~~~~~~ 397 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSG-----ERILT-SGFLVEGPTWAPNG-RVIMFFRQT 397 (435)
T ss_pred eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCc-----eEecc-CCCCCCCCeECCCC-CEEEEEEcc
Confidence 33343345556778999999 566554433 368888875443 22232 23356788999976 55544433
Q ss_pred C-----CcEEEEECCCC
Q 039302 393 D-----NQLTIWDLSLE 404 (479)
Q Consensus 393 D-----g~I~iwdl~~~ 404 (479)
. ..|.++|+...
T Consensus 398 ~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCCCcceEEEEECCCC
Confidence 3 25777777544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=111.81 Aligned_cols=255 Identities=14% Similarity=0.228 Sum_probs=170.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC------------Cce
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK------------DEG 236 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v 236 (479)
..-|.+|.|...| .+||||..+|.|.+|.-....+. .......++.|. ..|
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~----------------ey~~~t~fqshepEFDYLkSleieEKi 87 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKG----------------EYNFQTEFQSHEPEFDYLKSLEIEEKI 87 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeeccccccc----------------ceeeeeeeeccCcccchhhhhhhhhhh
Confidence 4568899999999 79999999999999987663221 011222233332 368
Q ss_pred EEEEeCCCCCC-eEEEEeCCCeEEEEecCCCCccc------------------cC-------------CC-CcccCCCcE
Q 039302 237 YAIDWNPVAPG-RLVSGDCNSCIHLWEPASDATWN------------------VD-------------PN-PFIGHAASV 283 (479)
Q Consensus 237 ~~l~~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~------------------~~-------------~~-~~~~h~~~V 283 (479)
..+.|.+++.. .++...+|.+|++|.+....... ++ .+ .-.+|+.-|
T Consensus 88 nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhi 167 (433)
T KOG1354|consen 88 NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHI 167 (433)
T ss_pred hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEe
Confidence 89999988764 56677779999999986532211 00 00 013688889
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE--EecCC-----CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 284 EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHN-----ADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--~~~h~-----~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
++|.++.+.. .|+++. |=.|.+|.+.-...+... ++.++ .-|++..|+|...++|+-.+..|+|++.|+|.
T Consensus 168 NSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 168 NSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 9999999888 666654 788999998765433222 23332 35889999999889999999999999999995
Q ss_pred CCCCCceEEEe------------ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 357 LKGGDSVVAHF------------EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 357 ~~~~~~~~~~~------------~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
..........| ..--..|..+.|++.+ +++++-. =-+|++||+.....+
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRD-yltvk~wD~nme~~p----------------- 306 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRD-YLTVKLWDLNMEAKP----------------- 306 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEec-cceeEEEeccccCCc-----------------
Confidence 43211111111 1123468899999954 8877653 268999999876432
Q ss_pred CCCCCceEEeecC-----------C--CCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 425 EDLPPQLLFIHQG-----------Q--KDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 425 ~~~p~~l~~~h~g-----------~--~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
.....+|.- . -.=..++|+-++. .+++|+..+ +++|.
T Consensus 307 ----v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 307 ----VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFN 357 (433)
T ss_pred ----ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEec
Confidence 233333321 0 1245789998874 888899885 55555
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-10 Score=103.11 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=117.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
....++|..|++.++. +++. -.+.|+||.+...+ +.++.+.....+=--++..|..
T Consensus 91 l~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~--------------------k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 91 LSFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNP--------------------KLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred EEeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCCh--------------------hheeeeecccCCCceEeecCCC
Confidence 3456899999999864 4433 35789999998743 3333333222111133334433
Q ss_pred CC-eEEE-EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCceeeEEec
Q 039302 246 PG-RLVS-GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN-IAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 246 ~~-~l~s-g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~-I~iwD~~~~~~~~~~~~~ 322 (479)
.. .||. |-.-|.|.|-|+...... ....+.+|.+.|.|++.+-+|. ++||+|..|+ |||||.+++. .+..++.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~-~l~E~RR 222 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGT-LLQELRR 222 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCc-Eeeeeec
Confidence 22 3333 455689999999764331 1345789999999999999998 9999999997 7999999986 5555532
Q ss_pred --CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 323 --HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 323 --h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
....|.+|+|+|+. .+||++|+.|+|+||.++...
T Consensus 223 G~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence 34579999999999 999999999999999998643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=123.99 Aligned_cols=203 Identities=12% Similarity=0.095 Sum_probs=122.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..+...+.+.+|+|++..++.+...+ ..|++||+.. ++. ..+....+.+.+.+|+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT---------------------GRR-RVVANFKGSNSAPAWS 248 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEEC
Confidence 446778899999999995555443222 4599999976 222 2232233455689999
Q ss_pred CCCCCeEE-EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVAPGRLV-SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~-sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|++. .|+ +.+.+|...||.+...... ...+..+...+....|+|+++.+++++..+|...||.+.........+.
T Consensus 249 PDG~-~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 249 PDGR-TLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998 555 6677887777765432211 1233444555667899999994444444456777776543211222222
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCc--
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQ-- 395 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~-- 395 (479)
.........+|+|++ .+|+..+.++ .|.+||+..+. .. .+.. ........|+|++ ..|+.++ ..|.
T Consensus 325 ~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~----~~-~lt~-~~~~~~p~~spdg-~~l~~~~~~~g~~~ 396 (427)
T PRK02889 325 FTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ----VT-ALTD-TTRDESPSFAPNG-RYILYATQQGGRSV 396 (427)
T ss_pred cCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC----eE-EccC-CCCccCceECCCC-CEEEEEEecCCCEE
Confidence 223334567899999 6676665544 69999998765 22 2322 2344678999976 5555554 4444
Q ss_pred EEEEEC
Q 039302 396 LTIWDL 401 (479)
Q Consensus 396 I~iwdl 401 (479)
+.+.++
T Consensus 397 l~~~~~ 402 (427)
T PRK02889 397 LAAVSS 402 (427)
T ss_pred EEEEEC
Confidence 444444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-11 Score=115.88 Aligned_cols=201 Identities=14% Similarity=0.193 Sum_probs=147.9
Q ss_pred EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeC
Q 039302 175 IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDC 254 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~ 254 (479)
++++.-...+++. +....|+-+++.. +..+..|....++++++..++... +|++|+.
T Consensus 139 m~y~~~scDly~~-gsg~evYRlNLEq---------------------GrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~ 195 (703)
T KOG2321|consen 139 MKYHKPSCDLYLV-GSGSEVYRLNLEQ---------------------GRFLNPFETDSGELNVVSINEEHG-LLACGTE 195 (703)
T ss_pred ccccCCCccEEEe-ecCcceEEEEccc---------------------cccccccccccccceeeeecCccc-eEEeccc
Confidence 4444333344444 4445677778776 677777777778999999999886 9999999
Q ss_pred CCeEEEEecCCCCccccC--CCCcccC-----CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 255 NSCIHLWEPASDATWNVD--PNPFIGH-----AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~--~~~~~~h-----~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+|.|-.||.+........ ......| ...|+++.|+.+|- .+++|+.+|.|.|||+|+.+..+..-.....+|
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 999999999875432210 0112223 34599999998877 899999999999999999874444335556789
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..+.|.+.+..--+...+...++|||-.+++ +...+.. ...++.+++-|.. .+|.++-.+..+..|=+....
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk----~~asiEp-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGK----PMASIEP-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcccccCC----ceeeccc-cCCcCceeeecCC-ceEEEecCCCcceeEEccccC
Confidence 9999987743333344566799999999988 6776664 5569999999954 888999888888888777654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-13 Score=119.41 Aligned_cols=223 Identities=18% Similarity=0.260 Sum_probs=154.1
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe
Q 039302 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
-++|+|+| +++|+++.- .+.|-|..+ .+..+.|. --+.|.-+.|..+...+|....
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~t---------------------lq~~qlf~-cldki~yieW~ads~~ilC~~y 68 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSET---------------------LQLHQLFL-CLDKIVYIEWKADSCHILCVAY 68 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccch---------------------hhHHHHHH-HHHHhhheeeeccceeeeeeee
Confidence 35799999 899997665 777877766 22222221 1346778999998876777788
Q ss_pred CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~ 333 (479)
.++.|.+|++... .|. ..+..-...+..++|+|+|++++.+...+-.|.+|.+.+.+... +.-....+..++|+
T Consensus 69 k~~~vqvwsl~Qp-ew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 69 KDPKVQVWSLVQP-EWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFH 142 (447)
T ss_pred ccceEEEEEeecc-eeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEEC
Confidence 8999999999663 333 23445567899999999999889999999999999999875322 23234456899999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHH
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
|++ .+.+..+.-.....+.+..-+. ...+..|...+-..+.+.|+|++ +.|| +||--.+.
T Consensus 143 ~dg-~f~ai~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley-------- 202 (447)
T KOG4497|consen 143 PDG-QFCAILSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY-------- 202 (447)
T ss_pred CCC-ceeeeeecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--------
Confidence 999 7777776543322222221111 23566677777788999999965 6554 67754432
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
.++.-|. ..++..++|+|.+. +++.|+.|+ ++|
T Consensus 203 ----------------kv~aYe~-~lG~k~v~wsP~~q-flavGsyD~~lrv 236 (447)
T KOG4497|consen 203 ----------------KVYAYER-GLGLKFVEWSPCNQ-FLAVGSYDQMLRV 236 (447)
T ss_pred ----------------eeeeeee-ccceeEEEeccccc-eEEeeccchhhhh
Confidence 1222222 25799999999885 888899887 544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=128.24 Aligned_cols=212 Identities=22% Similarity=0.375 Sum_probs=163.7
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEEeCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAIDWNP 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~ 243 (479)
+.-.+.++.+..+|.|.. +|.++.-| +.+-|+... ..+-.-+. |.. .|-.+.|+|
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p--------------------~~ppr~l~-h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDP--------------------FTPPRWLH-HITPWQVADVQWSP 77 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCC--------------------CCCceeee-ccCcchhcceeccc
Confidence 445688999999999954 44555554 667787762 34433332 333 677888988
Q ss_pred CCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 244 VAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 244 ~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.... +-++......-.+|++.......+ -..+.+|+..|+++.|+|+.+.++++|+.|..+..||+|+...++..+..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccce-EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec
Confidence 6542 444444455666899866443221 23467899999999999999999999999999999999999878877766
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
-......+.|+...++.||+ +....|.+||+|.+.. ++..+++|...|++++|+......+.+++.|++|++||..
T Consensus 157 w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred ccccCceeeecccCcchhhh-ccCCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 66778899999888666654 5667899999999886 8999999999999999988777889999999999999998
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
...
T Consensus 233 kSt 235 (1081)
T KOG0309|consen 233 KST 235 (1081)
T ss_pred ccc
Confidence 764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-09 Score=106.49 Aligned_cols=265 Identities=11% Similarity=0.114 Sum_probs=164.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEe---CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWA---DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..-.....-+.++|++..+.++.. ..|.|..|.+...... ...+............++++
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----------------L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----------------LTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------EEEEEEEEESSSCEEEEEEC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------eEEeeeeccCCCCcEEEEEe
Confidence 334556677899999966665544 3689999998873111 12233333233345579999
Q ss_pred CCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCc----------ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 243 PVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPF----------IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 243 ~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~----------~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
|++. +|+++. .+|.|.++++...+........+ ........++.|+|+++.++++.-....|.+|++.
T Consensus 96 ~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred cCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9998 666665 58999999998754322111101 11234578999999999555555556689999998
Q ss_pred CCCcee---eEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeC
Q 039302 312 VGKSAL---MSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSP 381 (479)
Q Consensus 312 ~~~~~~---~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp 381 (479)
.....+ ..+ ......-..+.|+|++..++++.-.++.|.++++.........+...... ......|.++|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 764212 122 23456678999999996677778888999999998332111122222211 12578899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
++..++++....+.|.+|++..... ....+-....+....+.++++|++.+++++...++
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g--------------------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATG--------------------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTT--------------------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred CCCEEEEEeccCCEEEEEEEecCCC--------------------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 7744555556688999999954311 00112222333345899999999988888776666
Q ss_pred -ceEEeee
Q 039302 462 -FNILMPS 468 (479)
Q Consensus 462 -i~iw~~~ 468 (479)
|.+|+..
T Consensus 315 ~v~vf~~d 322 (345)
T PF10282_consen 315 TVSVFDID 322 (345)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 9999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=137.63 Aligned_cols=193 Identities=18% Similarity=0.328 Sum_probs=152.6
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPV 244 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~ 244 (479)
+.|-..|.|+.-+|..+. .+||+.||.|++|.... .+.+..++. -...|+.+.|+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~---------------------~~~v~~~rt~g~s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGH---------------------GQQVVCFRTAGNSRVTRSRFNHQ 2262 (2439)
T ss_pred ecccCceeeecCCCCCce-EEecCCCceEEEEeccC---------------------CCeEEEeeccCcchhhhhhhccc
Confidence 344577888888998854 45899999999999987 444554432 2268999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCceeeEEe
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS---VDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|+ .+..+..||.+.+|.+... . ....+.|.....++.|-. . ++++++ .++.+.+||..-.......-.
T Consensus 2263 Gn-k~~i~d~dg~l~l~q~~pk-~----~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2263 GN-KFGIVDGDGDLSLWQASPK-P----YTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred CC-ceeeeccCCceeecccCCc-c----eeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeee
Confidence 97 9999999999999998631 1 245677999999999975 3 677764 578999999876533222238
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...++++++-|.. .+|++||.+|.|++||+|..+ ..+++.. ++ ...+|++|+..|.|+||++
T Consensus 2334 ~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrq----l~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQ----LRHTFQA---------LD--TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHH----HHHHhhh---------hh--hhheeeccCcccceEEEEc
Confidence 899999999999998 999999999999999999877 5666654 44 2479999999999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
....
T Consensus 2398 s~~~ 2401 (2439)
T KOG1064|consen 2398 SEFG 2401 (2439)
T ss_pred cccc
Confidence 8763
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-10 Score=113.33 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=130.7
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+...+|+|++. +|+.+... ..|++|++.++.... +..+...+.+++|+|+++.++++.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-----~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-----VASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred EEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-----eecCCCCccceEECCCCCEEEEEECCCC
Confidence 44555666788999999998 77776543 479999997754322 2234455677899999985555665555
Q ss_pred --cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
.|.+||+.++. ...+..+........|+|++ ..|+..+ ..+ .|+++|+.... ...+..+...+..+.
T Consensus 257 ~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l~~~~~~~~~~~ 328 (417)
T TIGR02800 257 NPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGE-----VRRLTFRGGYNASPS 328 (417)
T ss_pred CccEEEEECCCCC--EEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCC-----EEEeecCCCCccCeE
Confidence 58888988764 33444444445577999999 5554444 344 57778877654 334444566778899
Q ss_pred EeCCCCCEEEEEeCCC---cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 379 WSPHEGSTLAVSSADN---QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
|+|++ .+|+.++.++ .|.+||+..... +.+... .......|+|++..+++
T Consensus 329 ~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----------------------~~l~~~---~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 329 WSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----------------------RVLTDT---GLDESPSFAPNGRMILY 381 (417)
T ss_pred ECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----------------------EEccCC---CCCCCceECCCCCEEEE
Confidence 99966 7777776665 788888876421 111111 12445689999987777
Q ss_pred EEcCCCceEEee
Q 039302 456 STAADGFNILMP 467 (479)
Q Consensus 456 s~~~dgi~iw~~ 467 (479)
+...++...+.+
T Consensus 382 ~~~~~~~~~l~~ 393 (417)
T TIGR02800 382 ATTRGGRGVLGL 393 (417)
T ss_pred EEeCCCcEEEEE
Confidence 777666443333
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-11 Score=114.73 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=150.8
Q ss_pred cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC------C---------
Q 039302 179 SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN------P--------- 243 (479)
Q Consensus 179 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s------~--------- 243 (479)
|....++|....||.++||+.....-.. ...|...+ ++.+.++.|. |
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~---------------e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~ 63 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQ---------------EFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKA 63 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeee---------------eeccchhc---cCcceeEEEEEEeccchHHHHhHHHH
Confidence 3344688999999999999997732111 11222222 1233344442 1
Q ss_pred ----CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 244 ----VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 244 ----~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.+...|+-|...|.|.++++..++.... .....|.+.|+++.++.+-. .|.+++.|+.+..|+..... ....
T Consensus 64 ~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~--~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~-~~~~ 139 (541)
T KOG4547|consen 64 KKASLDTSMLVLGTPQGSVLLYSVAGGEITAK--LSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV-IIRI 139 (541)
T ss_pred hhccCCceEEEeecCCccEEEEEecCCeEEEE--EecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce-eeee
Confidence 1122788899999999999987655321 23457999999999998877 99999999999999999875 6667
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC-----CCCEEEEEeCCC
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH-----EGSTLAVSSADN 394 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~-----~~~~las~s~Dg 394 (479)
+.+....+.+++.+|++ ..|++++ +.|++||+.+.+ .+.+|.+|.++|++++|--. +..+|.+...+.
T Consensus 140 ~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 140 WKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 78888889999999998 8888877 689999999998 89999999999999999875 446677777788
Q ss_pred cEEEEECCCCC
Q 039302 395 QLTIWDLSLEK 405 (479)
Q Consensus 395 ~I~iwdl~~~~ 405 (479)
-+.+|-+....
T Consensus 213 ~i~~w~v~~~~ 223 (541)
T KOG4547|consen 213 GITVWVVEKED 223 (541)
T ss_pred ceeEEEEEccc
Confidence 89999887753
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7e-11 Score=121.56 Aligned_cols=193 Identities=19% Similarity=0.211 Sum_probs=147.4
Q ss_pred EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----ceEEEEeCCCCCCeE
Q 039302 175 IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-----EGYAIDWNPVAPGRL 249 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~~l 249 (479)
..+.-.+ ..++.++.+..+.|||.... ..+.... +.. ...-+-+++..- ++
T Consensus 93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~---------------------~~~~~i~-~~er~~l~~~~~~g~s~~~~-~i 148 (967)
T KOG0974|consen 93 AKLFEEN-KKIALVTSRNSLLIRDSKNS---------------------SVLSKIQ-SDERCTLYSSLIIGDSAEEL-YI 148 (967)
T ss_pred cchhhhc-ceEEEEEcCceEEEEecccC---------------------ceehhcC-CCceEEEEeEEEEeccCcEE-EE
Confidence 3444444 56777788889999998762 1111111 111 112233344443 89
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++|+.-+.|.+|+....+. ...+.+|.+.+-++.|+-++. +++++|+|.++|+|++.+.+.......+|...|..
T Consensus 149 ~~gsv~~~iivW~~~~dn~----p~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNK----PIRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCC----cceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 9999999999999974333 125889999999999999999 99999999999999999987555567889999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
++|.|+ .|+|++.|.+.++|+..... +..+..|. ..|+.+...+. ...++|++.|+.+++|++....
T Consensus 224 ~~~~~n---~i~t~gedctcrvW~~~~~~-----l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 224 CCFLPN---RIITVGEDCTCRVWGVNGTQ-----LEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEeccc---eeEEeccceEEEEEecccce-----ehhhhhhhhcceeEEEEcCC-ceEEEeeccCcchhhhhhhccc
Confidence 999995 89999999999999655433 44777775 46999999884 4899999999999999987643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-09 Score=108.70 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=120.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..+...+...+|+|++..++.+...+ ..|.+|++... .. ..+....+.+...+|
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---------------------~~-~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---------------------RR-EQITNFEGLNGAPAW 250 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---------------------CE-EEccCCCCCcCCeEE
Confidence 3446777899999999996665554333 36888898762 11 122222334457899
Q ss_pred CCCCCCeEE-EEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCce
Q 039302 242 NPVAPGRLV-SGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~-sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~~~~~~ 316 (479)
+|++. .|+ +.+.+| .|++||+.++... .+..+........|+|+++.++++...+| .|.++|+.+++.
T Consensus 251 SpDG~-~la~~~~~~g~~~Iy~~d~~~~~~~-----~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~- 323 (430)
T PRK00178 251 SPDGS-KLAFVLSKDGNPEIYVMDLASRQLS-----RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA- 323 (430)
T ss_pred CCCCC-EEEEEEccCCCceEEEEECCCCCeE-----EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 99998 665 555555 6888898765432 23334445667899999984444444444 466677776642
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
..+..........+|+|++ ..|+..+ .++ .|.+||+.++. . ..+. +........|+|++..++++...+
T Consensus 324 -~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~----~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 324 -ERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGS----V-RILT-DTSLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred -EEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCC----E-EEcc-CCCCCCCceECCCCCEEEEEEecC
Confidence 2222122233457899999 5555444 344 58889988765 2 2222 122233568999774444444444
Q ss_pred Cc--EEEEECC
Q 039302 394 NQ--LTIWDLS 402 (479)
Q Consensus 394 g~--I~iwdl~ 402 (479)
+. |.++++.
T Consensus 396 g~~~l~~~~~~ 406 (430)
T PRK00178 396 GRGVLMLVSIN 406 (430)
T ss_pred CceEEEEEECC
Confidence 44 5555654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-09 Score=109.95 Aligned_cols=200 Identities=14% Similarity=0.088 Sum_probs=125.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..+...+...+|+|++..++.+...+ ..|++||+.. ++. ..+..+...+.+++|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---------------------g~~-~~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT---------------------GQR-EKVASFPGMNGAPAF 241 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEE
Confidence 3445677789999999996555443332 4799999876 211 223334456677999
Q ss_pred CCCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCC--cEEEEEcCCCCce
Q 039302 242 NPVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDG--NIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg--~I~iwD~~~~~~~ 316 (479)
+|++..++++.+.++ .|++|++.++... .+..+........|+|+++ .|+.++ ..+ .|.++|+.+++
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~-- 313 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----RLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE-- 313 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEE-----ECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC--
Confidence 999983444555554 5888898765332 2233344455678999998 555444 344 57777877654
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
...+..+...+..+.|+|++ .+|+.++.++ .|.+||+.+.. ...+... .......|+|++ ..|+.++.+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~-~~~~~p~~spdg-~~l~~~~~~ 385 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG-----ERVLTDT-GLDESPSFAPNG-RMILYATTR 385 (417)
T ss_pred EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC-----eEEccCC-CCCCCceECCCC-CEEEEEEeC
Confidence 33444455667788999999 6777666665 78999988744 2223222 234566899976 555555544
Q ss_pred C---cEEEEEC
Q 039302 394 N---QLTIWDL 401 (479)
Q Consensus 394 g---~I~iwdl 401 (479)
+ .+.+.+.
T Consensus 386 ~~~~~l~~~~~ 396 (417)
T TIGR02800 386 GGRGVLGLVST 396 (417)
T ss_pred CCcEEEEEEEC
Confidence 3 3444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=120.94 Aligned_cols=220 Identities=17% Similarity=0.263 Sum_probs=166.3
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
-+++.+-+|...|+.+.|.|+.+.++||++.|-.|+.||+.. ...++..+..-......+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC--------------------CCcceeeeecccccCcee
Confidence 456788999999999999999999999999999999999998 356777776666677899
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+...+ .+++.+....|++||.+.+.... ..+++|...|+.+.|+..-...+.+++.||+|+.||.......-..
T Consensus 165 kwnyk~p-~vlasshg~~i~vwd~r~gs~pl---~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 165 KWNYKDP-NVLASSHGNDIFVWDLRKGSTPL---CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred eecccCc-chhhhccCCceEEEeccCCCcce---EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 9999888 45555567799999998876543 4567799999999998765557999999999999998765332222
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCC------CCceEEEeecCCCCeEEEEEeCCC---------
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKG------GDSVVAHFEYHKHPVTSIEWSPHE--------- 383 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~------~~~~~~~~~~h~~~I~~v~~sp~~--------- 383 (479)
......+|..-++-|.+.-+++.-... ..+.+++.++... ...++++|.||...|....|-...
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence 334456777778888775444432222 2444554443221 134899999999999888775422
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 039302 384 GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~ 403 (479)
...|+|=|.|..+++|-+..
T Consensus 321 dfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCceEeeeccH
Confidence 24799999999999998864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-10 Score=111.38 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=117.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..+...+...+|+|+|..++.+...++ .|++||+.. ++. ..+..........+|+
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t---------------------g~~-~~lt~~~g~~~~~~wS 270 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT---------------------QVR-EKVTSFPGINGAPRFS 270 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC---------------------CCe-EEecCCCCCcCCeeEC
Confidence 3455677889999999966665544444 577888765 121 1121112233478999
Q ss_pred CCCCCeEE-EEeCCCe--EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCcee
Q 039302 243 PVAPGRLV-SGDCNSC--IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN--IAIWDTRVGKSAL 317 (479)
Q Consensus 243 ~~~~~~l~-sg~~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~--I~iwD~~~~~~~~ 317 (479)
|++. .|+ +.+.+|. |+++|+.++.. ..+..+.......+|+|+++.++++...++. |.++|+.+++.
T Consensus 271 PDG~-~La~~~~~~g~~~Iy~~dl~tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-- 342 (448)
T PRK04792 271 PDGK-KLALVLSKDGQPEIYVVDIATKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-- 342 (448)
T ss_pred CCCC-EEEEEEeCCCCeEEEEEECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--
Confidence 9998 554 5566675 77778766433 2233344556778999999944455444454 55667766642
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
..+..........+|+|++..+++++..++ .|.++|+.++. . ..+... .......|+|++..++++...++.
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----M-QVLTST-RLDESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC----e-EEccCC-CCCCCceECCCCCEEEEEEecCCc
Confidence 222222223345799999954445444455 45557776654 2 222221 122345899977445555555554
Q ss_pred --EEEEECC
Q 039302 396 --LTIWDLS 402 (479)
Q Consensus 396 --I~iwdl~ 402 (479)
+.++++.
T Consensus 417 ~~l~~~~~~ 425 (448)
T PRK04792 417 QVLAAVSID 425 (448)
T ss_pred eEEEEEECC
Confidence 5666653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=117.87 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=145.7
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
..+.-... +++.+..+..+.+||................--..+.-+.++++.- ++++|+.-+.|.+|+....+.+.
T Consensus 93 ~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~- 169 (967)
T KOG0974|consen 93 AKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPI- 169 (967)
T ss_pred cchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcc-
Confidence 33444444 8888888999999998765332110111111111223344566555 89999999999999998554343
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|.+.|.++.|+-++ .++++.|+|.++++|++.+.+. ...+.-+|+..|+.+.|.|+ .++|++.|.+.++
T Consensus 170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~---~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrv 242 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREV---LGCTGFGHSARVWACCFLPN---RIITVGEDCTCRV 242 (967)
T ss_pred eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccc---cCcccccccceeEEEEeccc---eeEEeccceEEEE
Confidence 689999999999999999 9999999999999999999885 33466789999999999984 8999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+..... .+.+..|.+ ..|..++.++... +++++++|+ +++|++...
T Consensus 243 W~~~~~~-----------------------l~~y~~h~g-~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGTQ-----------------------LEVYDEHSG-KGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccce-----------------------ehhhhhhhh-cceeEEEEcCCce-EEEeeccCcchhhhhhhcc
Confidence 9655432 123445553 4799999999875 777777777 999987554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=108.44 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=121.3
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+....|+|++. +|+..+.+ ..|.+|++.++.... +....+.+....|+|+++.++++.+.+|
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-----l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-----ITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred eEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-----ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 44545677889999999998 77665533 368999997754322 2222234456899999984545666565
Q ss_pred --cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|.+||+.++. ...+..+........|+|++..++++...+| .|+++|+..++ . ..+...........|
T Consensus 266 ~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----~-~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 266 NPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----A-ERVTFVGNYNARPRL 338 (430)
T ss_pred CceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----E-EEeecCCCCccceEE
Confidence 58888998764 3344445555667899999944555544444 57777776654 2 222222233456789
Q ss_pred eCCCCCEEEEEeC-CC--cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 380 SPHEGSTLAVSSA-DN--QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 380 sp~~~~~las~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+|++ ..|+..+. ++ .|.+||+..... ..+ ... .......|+|++..++++
T Consensus 339 Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----------------------~~l-t~~--~~~~~p~~spdg~~i~~~ 391 (430)
T PRK00178 339 SADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----------------------RIL-TDT--SLDESPSVAPNGTMLIYA 391 (430)
T ss_pred CCCC-CEEEEEEccCCceEEEEEECCCCCE-----------------------EEc-cCC--CCCCCceECCCCCEEEEE
Confidence 9976 55555543 43 477888876531 111 111 122356899999877777
Q ss_pred EcCCC
Q 039302 457 TAADG 461 (479)
Q Consensus 457 ~~~dg 461 (479)
...++
T Consensus 392 ~~~~g 396 (430)
T PRK00178 392 TRQQG 396 (430)
T ss_pred EecCC
Confidence 76655
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-09 Score=101.60 Aligned_cols=247 Identities=13% Similarity=0.057 Sum_probs=146.8
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
..+.++|++.. +.+++.||.|.++|+.+ .+.+.++.. .....+++++++++ +++++
T Consensus 40 ~~~~~s~Dgr~-~yv~~rdg~vsviD~~~---------------------~~~v~~i~~-G~~~~~i~~s~DG~-~~~v~ 95 (369)
T PF02239_consen 40 AGLKFSPDGRY-LYVANRDGTVSVIDLAT---------------------GKVVATIKV-GGNPRGIAVSPDGK-YVYVA 95 (369)
T ss_dssp EEEE-TT-SSE-EEEEETTSEEEEEETTS---------------------SSEEEEEE--SSEEEEEEE--TTT-EEEEE
T ss_pred eEEEecCCCCE-EEEEcCCCeEEEEECCc---------------------ccEEEEEec-CCCcceEEEcCCCC-EEEEE
Confidence 44678999954 44557899999999998 566667754 34678899999998 66655
Q ss_pred -eCCCeEEEEecCCCCccccCC-C--CcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 253 -DCNSCIHLWEPASDATWNVDP-N--PFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 253 -~~dg~I~lwd~~~~~~~~~~~-~--~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
...+.+.++|..+.+...... . ........+..|..+|... .|+..- ..+.|.+.|....+.............
T Consensus 96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 578999999998755422110 0 1111345788888888888 555554 458888889887654443444445567
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-----------------------------------------------
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------------------------------------------- 360 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------------------------------------------- 360 (479)
....|+|++..++++...+..|-++|..+.+..
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 789999999455565566678888887755310
Q ss_pred ----CceEEEeecCCCCeEEEEEeCCCCCEEEEE----eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 361 ----DSVVAHFEYHKHPVTSIEWSPHEGSTLAVS----SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 361 ----~~~~~~~~~h~~~I~~v~~sp~~~~~las~----s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
+..+.++.....+ .-+..+|++ .++.+. ...++|.++|..+... ..
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~~------------------------~~ 308 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLKV------------------------VK 308 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEE------------------------EE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcce------------------------eE
Confidence 0122222222233 456778866 666665 4568999999987631 11
Q ss_pred Ee-ecCCCCeeeEEEeCCCCcEEEEEcCCC--ceEEeeecc
Q 039302 433 FI-HQGQKDLKELHWHTQVPGMIVSTAADG--FNILMPSNI 470 (479)
Q Consensus 433 ~~-h~g~~~V~~v~w~p~~~~ll~s~~~dg--i~iw~~~~~ 470 (479)
.. ......+..+.|+++|..+.+|.-+++ |.||+..++
T Consensus 309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred EEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 11 111124888999999998888887766 999987766
|
... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-09 Score=107.69 Aligned_cols=194 Identities=17% Similarity=0.160 Sum_probs=117.6
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeC-CC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDC-NS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~-dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
.+..+...+....|+|++. .|+..+. ++ .|++||+.++.... ...+. +......|+|+++.++++.+.+|.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~---g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREK--VTSFP---GINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred EeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEE--ecCCC---CCcCCeeECCCCCEEEEEEeCCCC
Confidence 4445566888999999998 7766543 33 68888987654322 12222 233467999999955556677775
Q ss_pred --EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 305 --IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 305 --I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
|.++|+.++. ...+..+.......+|+|++..++++...++ .|+++|+..++ . ..+...........|+
T Consensus 286 ~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~----~-~~Lt~~g~~~~~~~~S 358 (448)
T PRK04792 286 PEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK----V-SRLTFEGEQNLGGSIT 358 (448)
T ss_pred eEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----E-EEEecCCCCCcCeeEC
Confidence 7777887664 3444445556678899999954555554444 46666776654 2 2222223334567999
Q ss_pred CCCCCEEEEE-eCCCcEEE--EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE
Q 039302 381 PHEGSTLAVS-SADNQLTI--WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 381 p~~~~~las~-s~Dg~I~i--wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~ 457 (479)
|++ ..|+.. ..++...| +|+..... +.+. .+ .......|+|++..++.+.
T Consensus 359 pDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----------------------~~lt--~~-~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 359 PDG-RSMIMVNRTNGKFNIARQDLETGAM-----------------------QVLT--ST-RLDESPSVAPNGTMVIYST 411 (448)
T ss_pred CCC-CEEEEEEecCCceEEEEEECCCCCe-----------------------EEcc--CC-CCCCCceECCCCCEEEEEE
Confidence 977 555444 44554444 56554421 1111 11 1123457999998787777
Q ss_pred cCCC
Q 039302 458 AADG 461 (479)
Q Consensus 458 ~~dg 461 (479)
..++
T Consensus 412 ~~~g 415 (448)
T PRK04792 412 TYQG 415 (448)
T ss_pred ecCC
Confidence 7666
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-09 Score=106.06 Aligned_cols=208 Identities=10% Similarity=0.035 Sum_probs=118.8
Q ss_pred cCCcceeEEEEecCCCc--EEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 167 AHQGCVNRIRAMSQNPH--ICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~--~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...+.+..-+|+|+|.. ++.+...+| .|++.++... ....+.. ..+.....+|+
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-------------------~~~~lt~---~~g~~~~p~wS 239 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-------------------AGKKILA---LQGNQLMPTFS 239 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-------------------CceEeec---CCCCccceEEC
Confidence 34556677899999965 333444444 4666677651 1222222 33345578999
Q ss_pred CCCCCeEEEEe-CCC----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc--CCCCc
Q 039302 243 PVAPGRLVSGD-CNS----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT--RVGKS 315 (479)
Q Consensus 243 ~~~~~~l~sg~-~dg----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~--~~~~~ 315 (479)
|+|. .|+..+ .+| .+.+|++..+..... ......+.......+|+|+|+.++.+...+|...||.+ .....
T Consensus 240 PDG~-~Laf~s~~~g~~di~~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 240 PRKK-LLAFISDRYGNPDLFIQSFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCC-EEEEEECCCCCcceeEEEeecccCCCCcc-eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9998 666543 233 344467654211000 01111222344577999999944444445676666644 32211
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEe-CC--CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGS-DD--GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~d--g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
....+..+...+....|+|++ ..|+..+ .+ ..|.+||+.++. . ..+......+....|+|++..+++++..
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~----~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGR----D-YQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred ceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCC----e-EEccCCCCCccceEECCCCCEEEEEECC
Confidence 233344444567789999999 5555444 33 368999998776 2 3333333466789999976444444443
Q ss_pred --CCcEEEEECCCC
Q 039302 393 --DNQLTIWDLSLE 404 (479)
Q Consensus 393 --Dg~I~iwdl~~~ 404 (479)
...|.+||+...
T Consensus 392 ~g~~~L~~vdl~~g 405 (428)
T PRK01029 392 SNESELYLISLITK 405 (428)
T ss_pred CCCceEEEEECCCC
Confidence 346778888665
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=127.86 Aligned_cols=189 Identities=17% Similarity=0.282 Sum_probs=138.8
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.++...+.-+. ..|++++|+.+| +-+..+..||.+.+|.+.. ++....+.|.....
T Consensus 2241 ~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------------k~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2241 QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------------KPYTSWQCHNKALS 2296 (2439)
T ss_pred CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC----------------------cceeccccCCcccc
Confidence 45555555555 999999999999 5566668999999999875 56677888988888
Q ss_pred EEEeCCCCCCeEEEE---eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 238 AIDWNPVAPGRLVSG---DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg---~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+.|-. . .++++ +.++++++||..-...... . -..|.+.++++++-|... +|++||.+|.|++||+|..+
T Consensus 2297 Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~--v-~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2297 DFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSL--V-HTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred ceeeee--h-hhhccccCCCCCcccchhcccCcccce--e-eeecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHHH
Confidence 888876 3 56665 3578999999865443221 1 278999999999999998 99999999999999999875
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-C--CCC--e--EEEEEeCCCCCEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-H--KHP--V--TSIEWSPHEGSTL 387 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h--~~~--I--~~v~~sp~~~~~l 387 (479)
.+..+.+ +. .. .+|++|+..|.|+||++.... .+.++.. | .+- . ..+...+ .+.|
T Consensus 2370 -l~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~----ll~~~p~e~ak~gfFr~~g~Q~~v~~--~nri 2431 (2439)
T KOG1064|consen 2370 -LRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFG----LLHTFPSEHAKQGFFRNIGMQINVGQ--CNRI 2431 (2439)
T ss_pred -HHHHhhh---------hh-hh-heeeccCcccceEEEEccccc----hhhcCchhhcccchhhhcCceeeecc--CceE
Confidence 4444443 44 33 799999999999999999876 5666543 1 110 1 2223333 2567
Q ss_pred EEEeCCCc
Q 039302 388 AVSSADNQ 395 (479)
Q Consensus 388 as~s~Dg~ 395 (479)
.+|+.|++
T Consensus 2432 fsCgad~~ 2439 (2439)
T KOG1064|consen 2432 FSCGADGT 2439 (2439)
T ss_pred EEecCCCC
Confidence 77777764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-11 Score=103.51 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=120.5
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-- 300 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-- 300 (479)
..+...+..|+.+..+-+.+-.+. .++++..||.+.+++.+.. ..+..+.-..|.+ --+.+....+. ++.++.
T Consensus 79 i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~-~i~s~~~g 153 (319)
T KOG4714|consen 79 IDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN-SILSGGCG 153 (319)
T ss_pred cCceeeeeccCCCCCcccccccCC-ceEecCCCceEEEEechHH--Hhhhhhccccccc-ccccceeeccc-EEecCCcc
Confidence 455666767776666666666665 8999999999999997652 1111111111211 11222222333 333322
Q ss_pred ---CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 301 ---VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 301 ---~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
.-+..++|+++..+..+.....- ..|.+++-+|...+++++|++||.+-+||.|+... ++..+..|+.+|+.|
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~---p~S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM---PVSLLKAHKAEIWEV 229 (319)
T ss_pred eEeeccceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccc---hHHHHHHhhhhhhhe
Confidence 23456777777654322222222 33999999999989999999999999999999876 888899999999999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
.|+|.++..|+++++||.+.-||.+.
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999999999999999884
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=102.56 Aligned_cols=205 Identities=13% Similarity=0.126 Sum_probs=117.9
Q ss_pred ecCCCCceEEEEeCCCCCCe-E-EEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-
Q 039302 229 FGGHKDEGYAIDWNPVAPGR-L-VSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG- 303 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~-l-~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg- 303 (479)
+.........-+|+|++..+ + ++...+| .|.+.++..+.... +....+.....+|+|+|+.++++...+|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-----lt~~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-----ILALQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-----eecCCCCccceEECCCCCEEEEEECCCCC
Confidence 43444566778999999742 2 2444444 57777887654322 2223334456899999984444443333
Q ss_pred ---cEEEEEcCCC--CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe--CCCCCCCCceEEEeecCCCCeEE
Q 039302 304 ---NIAIWDTRVG--KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD--LRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 304 ---~I~iwD~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD--lr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
.+.+|++..+ .........+.......+|+|++..++.+...+|...||. +..... ....+..+...+..
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~ 331 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSC 331 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccc
Confidence 3455776653 1122222222234467899999944444444567555554 432211 23444445567788
Q ss_pred EEEeCCCCCEEEEEeC-C--CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 377 IEWSPHEGSTLAVSSA-D--NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 377 v~~sp~~~~~las~s~-D--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
..|+|++ ..|+..+. + ..|.+||+..+.. ..+. .+...+....|+|++..+
T Consensus 332 p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~-----------------------~~Lt--~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 332 PAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD-----------------------YQLT--TSPENKESPSWAIDSLHL 385 (428)
T ss_pred eeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe-----------------------EEcc--CCCCCccceEECCCCCEE
Confidence 9999976 66655543 3 3689999877631 1111 112346778999999877
Q ss_pred EEEEcCCC---ceEEee
Q 039302 454 IVSTAADG---FNILMP 467 (479)
Q Consensus 454 l~s~~~dg---i~iw~~ 467 (479)
++++..++ |.++++
T Consensus 386 ~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 386 VYSAGNSNESELYLISL 402 (428)
T ss_pred EEEECCCCCceEEEEEC
Confidence 77666544 455554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-09 Score=93.40 Aligned_cols=230 Identities=12% Similarity=0.038 Sum_probs=154.6
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
.+||.|+..|...+|...+. ...++....|...|.-+.=.-+....+..++.|.++++.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn--------------------~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~ 144 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTN--------------------DGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV 144 (344)
T ss_pred cEEEeccccceeeeecccCc--------------------ccceeeecccccchhhhhhhcccccceeeccCCcceeEEE
Confidence 57889999999999999862 3333444444443332222222223678888899999998
Q ss_pred cCCCCccccCCCCcccCCCc--EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE--EecCCCCEEEEEEcCCCCc
Q 039302 263 PASDATWNVDPNPFIGHAAS--VEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASC 338 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~ 338 (479)
+..+.. .+.-|... +++++.+++++ ++++.+....|..|.+......+.. .......-.+.+|+... .
T Consensus 145 ~~~~s~------~~~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~ 216 (344)
T KOG4532|consen 145 VSGDSN------KFAVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-L 216 (344)
T ss_pred EecCcc------cceeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-c
Confidence 865432 23334433 88999999999 9999999999999999876432222 23344455788999888 8
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCceEEE----eecCCCCeEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCCChHHHHHH
Q 039302 339 LLASGSDDGTFSIHDLRLLKGGDSVVAH----FEYHKHPVTSIEWSPHEGS-TLAVSSADNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 339 ~l~sgs~dg~i~iwDlr~~~~~~~~~~~----~~~h~~~I~~v~~sp~~~~-~las~s~Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
.+|++..||++.|||+|.... +... -..|.+.+..+.|+|.+.- +|...-.=+.+.+-|++.....+
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~t---pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q----- 288 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMAT---PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ----- 288 (344)
T ss_pred eEEEEecCCcEEEEEeccccc---chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee-----
Confidence 999999999999999998874 3332 2348999999999985432 34444446789999999886421
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
.--.|+...+.|. ...|..-.|+..+....++...
T Consensus 289 ----------~I~i~~d~~~~~~-tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 289 ----------VIVIPDDVERKHN-TQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ----------EEecCcccccccc-ccccccccccCCCcccccccch
Confidence 1122333344444 2357777888777644444433
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-10 Score=100.49 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=125.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
+.+++++.+.+.. ..|..|-..|+|.-+.+....+.+ ........|...+.++-|+.... .
T Consensus 68 P~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm-----------------~~~r~~~~h~~~v~~~if~~~~e-~ 128 (404)
T KOG1409|consen 68 PSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKM-----------------TFLKDYLAHQARVSAIVFSLTHE-W 128 (404)
T ss_pred CCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhc-----------------chhhhhhhhhcceeeEEecCCce-e
Confidence 4778889999887 778888999999999887643332 33445556777777777777665 6
Q ss_pred EEEEeCCCeEEEEecCCCC----------------------------c---------cccCCCCcccCCCcEEEEEECCC
Q 039302 249 LVSGDCNSCIHLWEPASDA----------------------------T---------WNVDPNPFIGHAASVEDLQWSPT 291 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~----------------------------~---------~~~~~~~~~~h~~~V~~l~~sp~ 291 (479)
+++.+.|..+.---.+.+. . .......+.+|.+.+.+++|.|.
T Consensus 129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~ 208 (404)
T KOG1409|consen 129 VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG 208 (404)
T ss_pred EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC
Confidence 7776666554321111110 0 00012346789999999999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 292 ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 292 ~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
.. ++.+|..|..+.+||+-..+.....+.+|...|..++.-+.- ..|.+++.||.|-+|++...
T Consensus 209 ~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 209 QR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred Cc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccce
Confidence 88 999999999999999987765667778999999999988877 88999999999999998744
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=108.07 Aligned_cols=255 Identities=15% Similarity=0.204 Sum_probs=173.4
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
++.....+|+.|.... .++|+|+.||.++|..+.+........+-.+ ..+...-+++.||+..|.-+.|+...
T Consensus 11 iPnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa------~snLsmNQtLeGH~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAA------ASNLSMNQTLEGHNASVMVVTWNENN 83 (1189)
T ss_pred CCCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCccccccccc------ccccchhhhhccCcceEEEEEecccc
Confidence 4556778999999977 7999999999999999987543332222111 11234456789999999999999998
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
. .|-|.+.+|-|.+|-+-.+ .|.-. ..-...++-|.+++|+.+|. .++..-.||.|.+=.+...+.--..++ ..
T Consensus 84 Q-KLTtSDt~GlIiVWmlykg-sW~EE-MiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLk--g~ 157 (1189)
T KOG2041|consen 84 Q-KLTTSDTSGLIIVWMLYKG-SWCEE-MINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELK--GQ 157 (1189)
T ss_pred c-cccccCCCceEEEEeeecc-cHHHH-HhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcc--hh
Confidence 8 9999999999999998764 33321 11233567899999999998 899999999998877765431111111 22
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC---CceEE----EeecCCCCeEEEEEeC-------CCCCEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---DSVVA----HFEYHKHPVTSIEWSP-------HEGSTLAVSS 391 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---~~~~~----~~~~h~~~I~~v~~sp-------~~~~~las~s 391 (479)
....+.|+++. ..++.+-..|.+.+||....-.. ..+.. .+......|..+.|.. -+...|+.+-
T Consensus 158 ~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 34578999998 77777888899999997532110 01111 1222233477777752 1336899999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
..|.+.|-.-.+.. .......| ..|..+.|+++|. +++.+|.+
T Consensus 237 ~nGr~QiMR~eND~------------------------~Pvv~dtg-m~~vgakWnh~G~-vLAvcG~~ 279 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDP------------------------EPVVVDTG-MKIVGAKWNHNGA-VLAVCGND 279 (1189)
T ss_pred cCceehhhhhcCCC------------------------CCeEEecc-cEeecceecCCCc-EEEEccCc
Confidence 99988874332221 22233333 5799999999996 66666655
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-08 Score=95.56 Aligned_cols=202 Identities=19% Similarity=0.352 Sum_probs=136.3
Q ss_pred cCCcceeEEEEecCC-CcEEEE-----EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 167 AHQGCVNRIRAMSQN-PHICAS-----WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~-~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
-|...|+.+.++|-+ +..+|+ ++.-+.|+||.+...... ......+| ....--.+.
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----------------~~~a~ksF--Fkadkvqm~ 224 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----------------QPVANKSF--FKADKVQMK 224 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc----------------chhhhccc--cccceeEEE
Confidence 356789999999973 455554 355678999998731100 01111222 122334688
Q ss_pred eCCCCCCeEEEEe--CCC---------eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcEEE
Q 039302 241 WNPVAPGRLVSGD--CNS---------CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNIAI 307 (479)
Q Consensus 241 ~s~~~~~~l~sg~--~dg---------~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I~i 307 (479)
|++.+.++|+.++ -|. ++++.+++. ....+ .+ ...++|.+++|+|+++ -|+++ -.-.++.|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V---~L-~k~GPVhdv~W~~s~~-EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSV---PL-LKEGPVHDVTWSPSGR-EFAVVYGFMPAKVTI 298 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEE---ec-CCCCCceEEEECCCCC-EEEEEEecccceEEE
Confidence 9998887555443 332 677777762 22221 11 2368999999999998 55554 45678999
Q ss_pred EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 308 WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 308 wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
||++.. ++..+ ..++-|++-|+|.| ++|+.+|-+ |.+-|||+.+.+ .+..+..- .-+-++|+|++
T Consensus 299 fnlr~~--~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~--~tt~~eW~PdG- 366 (566)
T KOG2315|consen 299 FNLRGK--PVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAA--NTTVFEWSPDG- 366 (566)
T ss_pred EcCCCC--EeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh----hccccccC--CceEEEEcCCC-
Confidence 999864 44443 46677999999999 777766654 789999999976 67777753 34568999966
Q ss_pred CEEEEEeC------CCcEEEEECCCC
Q 039302 385 STLAVSSA------DNQLTIWDLSLE 404 (479)
Q Consensus 385 ~~las~s~------Dg~I~iwdl~~~ 404 (479)
.+|+|+.. |+.++||++...
T Consensus 367 e~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 367 EYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cEEEEEeccccEEecCCeEEEEecCc
Confidence 77777654 889999999754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=98.52 Aligned_cols=187 Identities=16% Similarity=0.263 Sum_probs=142.8
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC------C-------------CCCcEEEEEeCCCcEEEE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS------P-------------TESDVFASCSVDGNIAIW 308 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s------p-------------~~~~~l~s~s~dg~I~iw 308 (479)
++|....||.+++|+...++. .....+...-++...+..|. | .+...++-|...|.|.+|
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred eEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 899999999999999977543 21122333334555566552 2 133367888889999999
Q ss_pred EcCCCCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 309 DTRVGKSALMSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 309 D~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
++..++ ....+ ..|.+.|+++.|+.+- ..|.+++.|+.+..|+..... .++.+......+.+++.+|+ +.+
T Consensus 86 s~~~g~-it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~----~~~~~~~~~~~~~sl~is~D-~~~ 158 (541)
T KOG4547|consen 86 SVAGGE-ITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKV----IIRIWKEQKPLVSSLCISPD-GKI 158 (541)
T ss_pred EecCCe-EEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccce----eeeeeccCCCccceEEEcCC-CCE
Confidence 999886 33333 5799999999999887 789999999999999999887 78888888999999999997 488
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCC-----CCcEEEEEcCC
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQ-----VPGMIVSTAAD 460 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~-----~~~ll~s~~~d 460 (479)
|++++ ++|++||+... +++....||. .|+++.|-.. |.++|.+....
T Consensus 159 l~~as--~~ik~~~~~~k-------------------------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETK-------------------------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred EEecc--ceEEEEEccCc-------------------------eEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 88876 58999999987 3444445554 6999999877 55666666555
Q ss_pred C-ceEEeeec
Q 039302 461 G-FNILMPSN 469 (479)
Q Consensus 461 g-i~iw~~~~ 469 (479)
. +.+|....
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 4 89998866
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-07 Score=88.19 Aligned_cols=220 Identities=12% Similarity=0.147 Sum_probs=137.7
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--------cCCCCceEEE
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--------GGHKDEGYAI 239 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l 239 (479)
.......++++|++..++++...+|.|.++++.......... .+..+ ..-.....++
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~---------------~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV---------------QTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE---------------EEEESEEEESSTTTTSSTCEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee---------------eecccCCCCCcccccccccceeE
Confidence 344556799999997777776679999999998742111000 00000 0112367899
Q ss_pred EeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCC-cccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--
Q 039302 240 DWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNP-FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-- 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-- 315 (479)
.|+|+++ +|++.+ ....|.+|++............ .......-+.+.|+|+++.+++++-.+++|.++++.....
T Consensus 150 ~~~pdg~-~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 150 VFSPDGR-FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EE-TTSS-EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EECCCCC-EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 9999998 666654 3458999999765421100011 1123456789999999997777888899999999983221
Q ss_pred -eeeEEec------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 316 -ALMSFKA------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 316 -~~~~~~~------h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
.+..+.. .......|.++|++..++++....+.|.+|++.........+..+.......+.+.++|++ .+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEE
Confidence 1222211 1125788999999966666676788999999953321122444455445568999999976 6665
Q ss_pred EEe-CCCcEEEEECCCC
Q 039302 389 VSS-ADNQLTIWDLSLE 404 (479)
Q Consensus 389 s~s-~Dg~I~iwdl~~~ 404 (479)
++. .++.|.+|++...
T Consensus 308 Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEETTTTEEEEEEEETT
T ss_pred EEecCCCeEEEEEEeCC
Confidence 555 6789999988543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-08 Score=94.93 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=128.3
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
++++-..+|.|.|.|..+ .+.+.++......-..+.++|++. ++++++.||.|.++|+
T Consensus 8 ~~V~~~~~~~v~viD~~t---------------------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT---------------------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEEEGGGTEEEEEETTT----------------------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEET
T ss_pred EEEEecCCCEEEEEECCC---------------------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEEC
Confidence 445667789999999987 567777765544444578999998 8888899999999999
Q ss_pred CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec-------CCCCEEEEEEcCCC
Q 039302 264 ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-------HNADVNVISWNRLA 336 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~-------h~~~v~~l~~~p~~ 336 (479)
.+.+... .+.. .....+++++++|+.+++++...+.+.++|.++.+ ++..+.. ....+..|..+|..
T Consensus 66 ~~~~~v~----~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 66 ATGKVVA----TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp TSSSEEE----EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred CcccEEE----EEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCC
Confidence 8865422 2222 34568899999999666667789999999999985 5555532 23467788888888
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 337 ~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..++++--+.+.|.+.|...... +......-........|+|++..++++....+.|-++|+...+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~---~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKN---LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSC---EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred CEEEEEEccCCeEEEEEeccccc---cceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 45666666668999999887753 3333443456778899999764445555667889999987653
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-08 Score=93.45 Aligned_cols=234 Identities=15% Similarity=0.240 Sum_probs=152.5
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC-eEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG-RLVS 251 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-~l~s 251 (479)
++..|+.+. .+.| --..+.|++|++... ......+ |...|..+.++|.... .+|+
T Consensus 129 W~~qfs~dE-sl~a-rlv~nev~f~~~~~f--------------------~~~~~kl--~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 129 WVPQFSIDE-SLAA-RLVSNEVQFYDLGSF--------------------KTIQHKL--SVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred cccccccch-hhhh-hhhcceEEEEecCCc--------------------cceeeee--eccceeeEEecCCCCCceEEE
Confidence 688999887 3333 345578999999871 2233333 5678899999997433 4443
Q ss_pred -----EeCCCeEEEEecCCCCccc-cCCCCcccCCCcEEEEEECCCCCcEEEEEeC--CC---------cEEEEEcCCCC
Q 039302 252 -----GDCNSCIHLWEPASDATWN-VDPNPFIGHAASVEDLQWSPTESDVFASCSV--DG---------NIAIWDTRVGK 314 (479)
Q Consensus 252 -----g~~dg~I~lwd~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--dg---------~I~iwD~~~~~ 314 (479)
++.=+.++||......... +..+.|. ...=-.+.|++-+..+|+.++. |+ ++++.++.. .
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~ 261 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-E 261 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-c
Confidence 3455689999886332211 1112222 1222357899888766655543 43 588888883 3
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLL-ASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA- 392 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l-~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~- 392 (479)
.+...+ ...++|.++.|+|.+..+- +-|-.=..+.|||+|.. ++..|. .++=+++-|+|++ ++|+.+|-
T Consensus 262 s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~--egpRN~~~fnp~g-~ii~lAGFG 332 (566)
T KOG2315|consen 262 SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFP--EGPRNTAFFNPHG-NIILLAGFG 332 (566)
T ss_pred eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCC--CCCccceEECCCC-CEEEEeecC
Confidence 233333 3478999999999983332 33556678999999843 555554 6788999999977 77777765
Q ss_pred --CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC------CCceE
Q 039302 393 --DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA------DGFNI 464 (479)
Q Consensus 393 --Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~------dgi~i 464 (479)
-|.|-|||....+.. .... -..-+-+.|+|+|.+++.++.. +|++|
T Consensus 333 NL~G~mEvwDv~n~K~i------------------------~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLI------------------------AKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred CCCCceEEEeccchhhc------------------------cccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 478999999885421 1111 1245668999999987766654 56899
Q ss_pred Eeee
Q 039302 465 LMPS 468 (479)
Q Consensus 465 w~~~ 468 (479)
|+..
T Consensus 387 whyt 390 (566)
T KOG2315|consen 387 WHYT 390 (566)
T ss_pred EEec
Confidence 9874
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-10 Score=113.35 Aligned_cols=211 Identities=18% Similarity=0.278 Sum_probs=147.9
Q ss_pred CcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
...+.|+++.-.. ..+++.|..+|.|.+-.+.... ........+|...+++++|++...+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-------------------dSs~E~tp~~ar~Ct~lAwneLDtn 116 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-------------------DSSAEVTPGYARPCTSLAWNELDTN 116 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-------------------cccceecccccccccccccccccHH
Confidence 3456677766655 3799999999999998887621 1122345577889999999998776
Q ss_pred eEEEEe----CCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGD----CNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~----~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.||.|- .|..+.|||+.+.-........|.+ ......+++|..+.+ ++.+|...+.++++|+|........+
T Consensus 117 ~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 117 HLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 788873 4668999999875221111111222 344567899997777 89999999999999999653222222
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCCCCCCceEEEeecCCC----CeEEEEEeCCCCCEEEEEeCC-CcE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHD-LRLLKGGDSVVAHFEYHKH----PVTSIEWSPHEGSTLAVSSAD-NQL 396 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD-lr~~~~~~~~~~~~~~h~~----~I~~v~~sp~~~~~las~s~D-g~I 396 (479)
....+..+...|....++++-. ||.|.+|| .++.+. ++..+...+. .+..++|+|....++++.+.| ++|
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien---pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN---PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhhcc---HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence 2334566777776657887765 99999999 776664 4444443333 389999999887888888876 589
Q ss_pred EEEECCCCC
Q 039302 397 TIWDLSLEK 405 (479)
Q Consensus 397 ~iwdl~~~~ 405 (479)
+++|+....
T Consensus 270 rlydi~~v~ 278 (783)
T KOG1008|consen 270 RLYDICVVG 278 (783)
T ss_pred EEecccccC
Confidence 999998654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=92.68 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=108.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.|++.-.+-..+--+ +-++++..||.+.+++......... ..+.. |.+ -.+......++
T Consensus 87 ~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~~~~---------------~i~~~----~~~-~as~~~~~~~~ 145 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLALMS---------------RIPSI----HSG-SASRKICRHGN 145 (319)
T ss_pred ccCCCCCcccccccC-CceEecCCCceEEEEechHHHhhhh---------------hcccc----ccc-ccccceeeccc
Confidence 555443333333333 4678999999999999877221111 01111 111 11112222222
Q ss_pred CeEEEEe-----CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 247 GRLVSGD-----CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 247 ~~l~sg~-----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
.+.++. .-+..+.|+++..+........ ...|.+++-+|...+++++|+.||.+-+||.|....+...+.
T Consensus 146 -~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ 220 (319)
T KOG4714|consen 146 -SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK 220 (319)
T ss_pred -EEecCCcceEeeccceeeecccccccccccccc----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH
Confidence 333322 2345567776554332221111 234999999999998999999999999999999876777889
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
+|...++-+-|+|..+..|++++.||.+..||..+
T Consensus 221 ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999999999999999999999999873
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-06 Score=79.14 Aligned_cols=263 Identities=11% Similarity=0.122 Sum_probs=164.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
.++..+.+.++-|.|+|++..+.+.... .|.|-.|.+......+ ..+........+-.-++
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-----------------t~ln~~~~~g~~p~yvs 95 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-----------------TFLNRQTLPGSPPCYVS 95 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-----------------EEeeccccCCCCCeEEE
Confidence 3566778889999999998555544444 6888888887621111 11111111122336799
Q ss_pred eCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCc----------EEEEEECCCCCcEEEEEe-CCCcEEEE
Q 039302 241 WNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAAS----------VEDLQWSPTESDVFASCS-VDGNIAIW 308 (479)
Q Consensus 241 ~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~~~~~l~s~s-~dg~I~iw 308 (479)
+++++. +|+++. ..|.|.++-++..+.... ......|.++ +....+.|+++ +++++. .--.|.+|
T Consensus 96 vd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y 172 (346)
T COG2706 96 VDEDGR-FVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLY 172 (346)
T ss_pred ECCCCC-EEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence 999998 666654 467999999977544221 1123334444 88999999999 555554 34469999
Q ss_pred EcCCCCceee--EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---------CCCCeEEE
Q 039302 309 DTRVGKSALM--SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---------HKHPVTSI 377 (479)
Q Consensus 309 D~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---------h~~~I~~v 377 (479)
++..++.... ....-...-..|.|+|++....+..--+++|.+|....... .+..+.. -..+...|
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g---~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG---KFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc---eEEEeeeeccCccccCCCCceeEE
Confidence 9997642111 11234456789999999955556666789999999887532 2222222 13456789
Q ss_pred EEeCCCCCEEEEEeC-CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEE
Q 039302 378 EWSPHEGSTLAVSSA-DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIV 455 (479)
Q Consensus 378 ~~sp~~~~~las~s~-Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~ 455 (479)
..+|++ ++|.++.. ...|.+|.+..... ...++....-+ ...+++.++|.+..|+|
T Consensus 250 his~dG-rFLYasNRg~dsI~~f~V~~~~g---------------------~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 250 HISPDG-RFLYASNRGHDSIAVFSVDPDGG---------------------KLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EECCCC-CEEEEecCCCCeEEEEEEcCCCC---------------------EEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 999965 77766654 55788888765421 01222222222 24889999999975554
Q ss_pred EEcCCC-ceEEeeecc
Q 039302 456 STAADG-FNILMPSNI 470 (479)
Q Consensus 456 s~~~dg-i~iw~~~~~ 470 (479)
+.-++. |.+|....-
T Consensus 308 a~q~sd~i~vf~~d~~ 323 (346)
T COG2706 308 ANQKSDNITVFERDKE 323 (346)
T ss_pred EccCCCcEEEEEEcCC
Confidence 444333 888877554
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.7e-10 Score=106.12 Aligned_cols=213 Identities=19% Similarity=0.291 Sum_probs=146.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|..+....+. +-+++++.|.+|++|.+....... ....+..+++.|+.+|..+.|-
T Consensus 729 ~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~--------------~tsaCQfTY~aHkk~i~~igfL 793 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI--------------GTSACQFTYQAHKKPIHDIGFL 793 (1034)
T ss_pred ecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc--------------ccceeeeEhhhccCcccceeee
Confidence 4578999999998877665 566788999999999998743222 1345778999999999999998
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-CCc-EEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-ESD-VFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~-~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
.+.. .+++ +||.|++||.--+..... .......+.+..+..-++ .+. +++.|+...+|+++|.|...- ...+
T Consensus 794 ~~lr-~i~S--cD~giHlWDPFigr~Laq--~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~ 867 (1034)
T KOG4190|consen 794 ADLR-SIAS--CDGGIHLWDPFIGRLLAQ--MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCEL 867 (1034)
T ss_pred eccc-eeee--ccCcceeecccccchhHh--hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-eeeE
Confidence 8765 5554 579999999865433210 011111223333333333 332 445558899999999998742 2222
Q ss_pred -----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 321 -----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 321 -----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
.+.+.-+.+++..+.| +.+|+|-.+|+|.+.|.|+++ .+...+.-......++ .|.+ ..|+....|.+
T Consensus 868 kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-apsd-q~L~~saldHs 940 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APSD-QALAQSALDHS 940 (1034)
T ss_pred EeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-Cchh-HHHHhhcccce
Confidence 3345668899999999 899999999999999999998 5665554333333333 2433 67777777888
Q ss_pred EEE-EECCC
Q 039302 396 LTI-WDLSL 403 (479)
Q Consensus 396 I~i-wdl~~ 403 (479)
+.+ |-...
T Consensus 941 laVnWhald 949 (1034)
T KOG4190|consen 941 LAVNWHALD 949 (1034)
T ss_pred eEeeehhcC
Confidence 877 75443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.6e-09 Score=92.88 Aligned_cols=225 Identities=18% Similarity=0.234 Sum_probs=149.9
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc-ccCCCCcccCC------------CcEEEEEEC-CCCCcEEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW-NVDPNPFIGHA------------ASVEDLQWS-PTESDVFAS 298 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~-~~~~~~~~~h~------------~~V~~l~~s-p~~~~~l~s 298 (479)
...|+++.|...|. +|++|+..|+|.+|.-.....+ ..-...|++|. ..|+.|.|. +.+.+.|+.
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45789999999997 9999999999999976543311 11112355553 347778875 556678888
Q ss_pred EeCCCcEEEEEcCCCC------------------c-----------------------eeeEE-ecCCCCEEEEEEcCCC
Q 039302 299 CSVDGNIAIWDTRVGK------------------S-----------------------ALMSF-KAHNADVNVISWNRLA 336 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~------------------~-----------------------~~~~~-~~h~~~v~~l~~~p~~ 336 (479)
.+.|++|++|.++... . +...+ .+|..-|++++|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 9999999999886531 0 00111 4677789999999988
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-----CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHH
Q 039302 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-----HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEA 411 (479)
Q Consensus 337 ~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-----~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~ 411 (479)
..+++ ++|-.|.+|.+.-... .-.+..++.|. .-|++..|+|..-++|.-++..|.|++-|++...-.....
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred -heeee-ccceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 45554 4678999999886653 11233445554 4589999999877889999999999999998432100000
Q ss_pred HHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 412 EFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 412 ~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
.+ .... .-+...-|...--..|.++.|++++. +|++-..-.++||+...-
T Consensus 262 kl------fe~~--~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 262 KL------FELT--IDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hh------hhhc--cCcccchhHHHHhhhhcceEEcCCCc-EEEEeccceEEEEecccc
Confidence 00 0000 00011111112224699999999995 888888888999988654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.8e-07 Score=98.39 Aligned_cols=271 Identities=13% Similarity=0.121 Sum_probs=155.4
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
..+++.+.+..++++-+.++.|++||........ .......+ ...+. .. .++-..-..|++.+++. .|+.+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~--ig~~g~~G---~~dG~-~~--~a~f~~P~GIavd~~gn-~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ--IGSTGEEG---LRDGS-FE--DATFNRPQGLAYNAKKN-LLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE--EccCCCcC---CCCCc-hh--ccccCCCcEEEEeCCCC-EEEEE
Confidence 4568887655788888889999999986532100 00000000 00000 00 01112357889998876 66555
Q ss_pred e-CCCeEEEEecCCCCccccCC-----CCcccC-------CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 253 D-CNSCIHLWEPASDATWNVDP-----NPFIGH-------AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 253 ~-~dg~I~lwd~~~~~~~~~~~-----~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+ ..+.|+++|+.++....+.. ..+.+. -....+++|+|++..++++.+.++.|++||..++. +..
T Consensus 642 Dt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~ 719 (1057)
T PLN02919 642 DTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRV 719 (1057)
T ss_pred eCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEE
Confidence 5 45689999986542211100 001110 11346899999655588888889999999998763 222
Q ss_pred EecC---------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE-----------EEeecC---
Q 039302 320 FKAH---------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV-----------AHFEYH--- 370 (479)
Q Consensus 320 ~~~h---------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~-----------~~~~~h--- 370 (479)
+.+. -...+.|+|+|++..++++-+.++.|++||+.++.. ..+ ..+..+
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecccccCcccccccCCCCc
Confidence 2111 123467999999855788888889999999986541 000 011000
Q ss_pred -----CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEE
Q 039302 371 -----KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH 445 (479)
Q Consensus 371 -----~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~ 445 (479)
-.....+++++++ .++++-+.+++|++||........ +.+. ......+... . ...-.....++
T Consensus 798 g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~t----iaG~---G~~G~~dG~~--~--~a~l~~P~GIa 865 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTT----LAGT---GKAGFKDGKA--L--KAQLSEPAGLA 865 (1057)
T ss_pred hhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEE----Eecc---CCcCCCCCcc--c--ccccCCceEEE
Confidence 1123588999965 788888899999999997653110 0000 0000000000 0 00012478899
Q ss_pred EeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 446 WHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 446 w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+++++. ++++...++ |++|++..
T Consensus 866 vd~dG~-lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 866 LGENGR-LFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeCCCC-EEEEECCCCEEEEEECCC
Confidence 999996 666665555 89998754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=97.04 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=121.2
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK- 314 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~- 314 (479)
.+.++|+-.-.++-++.+.+..|.+-++.++-. +.|. .++.|.+++|.-.++ ++..|..+|.|..+|+|...
T Consensus 214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~-----qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-----QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred chhhhhhhccceeeecccccceeEEEEeecccc-----cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeeccc
Confidence 344588865555556666688999999988643 3344 567899999998887 99999999999999999872
Q ss_pred ---ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE--eCCCCCEEEE
Q 039302 315 ---SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW--SPHEGSTLAV 389 (479)
Q Consensus 315 ---~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~--sp~~~~~las 389 (479)
.+... .-|...|+++..-.....+|++.+.+|.|++||+|..+. ..-+..+.+|...-.-+-+ ++ ....+++
T Consensus 287 G~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s 363 (425)
T KOG2695|consen 287 GNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-KKSVMQYEGHVNLSAYLPAHVKE-EEGSIFS 363 (425)
T ss_pred CCCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-ccceeeeeccccccccccccccc-ccceEEE
Confidence 24433 348899999988775558899999999999999998873 2248889998765444433 44 3467888
Q ss_pred EeCCCcEEEEECCCC
Q 039302 390 SSADNQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~ 404 (479)
++.|...+||.++.+
T Consensus 364 ~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSG 378 (425)
T ss_pred ccCeeEEEEEecccC
Confidence 999999999999976
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-08 Score=89.52 Aligned_cols=218 Identities=15% Similarity=0.264 Sum_probs=146.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC------------Cce
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK------------DEG 236 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v 236 (479)
...|+++.|...| .++|||...|.|.+|.-...... ..+....|++|. ..|
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~c----------------eykf~teFQshe~EFDYLkSleieEKi 88 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGC----------------EYKFFTEFQSHELEFDYLKSLEIEEKI 88 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeeccccccc----------------chhhhhhhcccccchhhhhhccHHHHh
Confidence 3567888888877 79999999999999987663210 122233344443 257
Q ss_pred EEEEeCCCC-CCeEEEEeCCCeEEEEecCCCCcc--------------------------------------ccCCCCc-
Q 039302 237 YAIDWNPVA-PGRLVSGDCNSCIHLWEPASDATW--------------------------------------NVDPNPF- 276 (479)
Q Consensus 237 ~~l~~s~~~-~~~l~sg~~dg~I~lwd~~~~~~~--------------------------------------~~~~~~~- 276 (479)
.++.|...+ ...++..+.|.+|++|.+...... ..+.+.+
T Consensus 89 n~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvya 168 (460)
T COG5170 89 NAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYA 168 (460)
T ss_pred hheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecc
Confidence 888888654 346777778999999998653100 0000111
Q ss_pred ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee--eEEecCC-----CCEEEEEEcCCCCcEEEEEeCCCeE
Q 039302 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL--MSFKAHN-----ADVNVISWNRLASCLLASGSDDGTF 349 (479)
Q Consensus 277 ~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~--~~~~~h~-----~~v~~l~~~p~~~~~l~sgs~dg~i 349 (479)
..|..-+++|.|+.+.. .++++ .|=.|.+|++.-...+. .-++.|. .-|++..|+|...+++.-.+..|.|
T Consensus 169 NaH~yhiNSiS~NsD~e-t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 169 NAHPYHINSISFNSDKE-TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccceeEeeeeeecCchh-eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 35777889999998876 55554 57889999987654332 2334443 3588999999987888899999999
Q ss_pred EEEeCCCCCCCCceEEE------------eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 350 SIHDLRLLKGGDSVVAH------------FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 350 ~iwDlr~~~~~~~~~~~------------~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
++-|+|.......+... |..-...|..+.|++++ +++++-+ =.+|+|||.+..+.+
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-yltvkiwDvnm~k~p 314 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-YLTVKIWDVNMAKNP 314 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-cceEEEEecccccCC
Confidence 99999954321111111 22234578899999955 7777654 468999999987643
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-07 Score=93.65 Aligned_cols=248 Identities=18% Similarity=0.210 Sum_probs=170.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC-
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP- 246 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~- 246 (479)
|...-+++.|+|.| +||-|+. ..|.+-|... .+.+..+..|...|+.+.|.|...
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s---------------------~q~iqsie~h~s~V~~VrWap~~~p 69 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS---------------------LQLIQSIELHQSAVTSVRWAPAPSP 69 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh---------------------hhhhhccccCccceeEEEeccCCCc
Confidence 44557889999998 8888665 4788888776 677888889999999999987431
Q ss_pred ----------CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCC
Q 039302 247 ----------GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---ESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 247 ----------~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
-+||+++-.|.|.+||...... ...+..|..++.+++|-+. .+.++++-....+|.+|+..++
T Consensus 70 ~~llS~~~~~lliAsaD~~GrIil~d~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 70 RDLLSPSSSQLLIASADISGRIILVDFVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred hhccCccccceeEEeccccCcEEEEEehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence 1688999999999999977543 3457778899999999663 3457888788899999999998
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCC------------C-----
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKH------------P----- 373 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~------------~----- 373 (479)
. .............|+.+.|.....+..-+..|.+.+-+.-....+..+.+.|. .|.. .
T Consensus 146 ~-k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 146 E-KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred c-eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 6 55555555567788999998877777777788888877654443332333332 2222 0
Q ss_pred --------eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEE
Q 039302 374 --------VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH 445 (479)
Q Consensus 374 --------I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~ 445 (479)
...++|+|+-.+.+.. .....+.|+|+..+.. +..+--....+.-+.
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~------------------------l~vvpier~~akfv~ 279 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECC------------------------LAVVPIERGGAKFVD 279 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhce------------------------eEEEEeccCCcceeE
Confidence 1135678866444443 3567799999987642 222211123455566
Q ss_pred EeCCCC-cEEEEEcCCC-ceEEeeec
Q 039302 446 WHTQVP-GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 446 w~p~~~-~ll~s~~~dg-i~iw~~~~ 469 (479)
|-|+.. ..+.+...+| +.||....
T Consensus 280 vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 280 VLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccCCCcceEEEEecCCeEEEEEeec
Confidence 766542 2455555555 88887654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=93.17 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=110.7
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.++.+..++.+ .++|.+..+....++++..... ..+++..+..- ..-+++.|..... ...
T Consensus 64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----------------~~kl~~~~~v~-~~~~ai~~~~~~~-sv~ 123 (390)
T KOG3914|consen 64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----------------GAKLLDVSCVP-KRPTAISFIREDT-SVL 123 (390)
T ss_pred cccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----------------cceeeeEeecc-cCcceeeeeeccc-eEE
Confidence 34445566666 7888888888877888766321 02233333222 2334444544444 444
Q ss_pred EEeCCC---eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCC
Q 039302 251 SGDCNS---CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNAD 326 (479)
Q Consensus 251 sg~~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~ 326 (479)
.+..-| .+.+|....+. .....||-+.+.+++|+|+++ +++++..|..|+|-...... .+.++ .+|..-
T Consensus 124 v~dkagD~~~~di~s~~~~~-----~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-~IesfclGH~eF 196 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGR-----CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-VIESFCLGHKEF 196 (390)
T ss_pred EEeecCCceeeeeecccccC-----cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-chhhhccccHhh
Confidence 444444 45555544321 366889999999999999998 99999999999998776654 33343 679999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~ 359 (479)
|..++.-++. .|++||.|++|++||+++++.
T Consensus 197 VS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 197 VSTISLTDNY--LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeeeeccCc--eeeecCCCCcEEEEecccCCc
Confidence 9999999865 689999999999999999983
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-07 Score=100.19 Aligned_cols=221 Identities=12% Similarity=0.107 Sum_probs=134.5
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCccc-ccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNA-LAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
...|++.+++..++++-...+.|+++|+....-. +...+. ..... .......... -..-++++++|++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~---~g~~~--~gg~~~~~~~-ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGT---KGSDY--QGGKKGTSQV-LNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCc---ccCCC--CCChhhhHhh-cCCCeEEEEecCCCeEEE
Confidence 4677888877455565566678999987652110 000000 00000 0000000000 012358999995543677
Q ss_pred EEeCCCeEEEEecCCCCccccC----CCCccc------CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE-
Q 039302 251 SGDCNSCIHLWEPASDATWNVD----PNPFIG------HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS- 319 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~----~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~- 319 (479)
+.+.++.|++||..++...... .....+ .-...+.|+|+|++..++++-+.++.|++||+.++...+..
T Consensus 700 ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 7778899999998664321100 000111 11345679999998867778888899999999876421110
Q ss_pred -----------Eec--------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-----------
Q 039302 320 -----------FKA--------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----------- 369 (479)
Q Consensus 320 -----------~~~--------h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----------- 369 (479)
+-. .-.....+++++++ .++++-+.++.|++||..+.. +.++.+
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~-----v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKR-----VTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCe-----EEEEeccCCcCCCCCcc
Confidence 000 01123588999998 788989999999999998654 222222
Q ss_pred ---CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 370 ---HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 370 ---h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+-.....|++++++ .++++-+.+++|++||+....
T Consensus 854 ~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 854 LKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCc
Confidence 12246789999965 888998999999999998764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-06 Score=94.05 Aligned_cols=286 Identities=13% Similarity=0.190 Sum_probs=162.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcc--------cccc--cccccCCCC---------Cccc--cCCC--
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLN--------ALAE--SETVAGHGA---------PQVL--NQSP-- 225 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~--------~~~~--~~~~~~~~~---------~~~~--~~~~-- 225 (479)
.++|.+++|+|++ .+||..+.+|+|.+-...-..- .+.. +-..+.++. .... ...+
T Consensus 120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 5789999999999 5777777788887765432110 0000 000000000 0000 0001
Q ss_pred ----cEEecCCCCceEEEEeCCCCCCeEEEEeC---C---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcE
Q 039302 226 ----LVKFGGHKDEGYAIDWNPVAPGRLVSGDC---N---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDV 295 (479)
Q Consensus 226 ----~~~~~~h~~~v~~l~~s~~~~~~l~sg~~---d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 295 (479)
...+. +...-..++|-.+|. ++|+.+. . ..|+||+-. +....+ ..+. .+--.+++|.|.|+ +
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~v---~gLe~~l~WrPsG~-l 270 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GELQST-SEPV---DGLEGALSWRPSGN-L 270 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceEEec-cccC---CCccCCccCCCCCC-E
Confidence 11222 444567899999998 8888764 2 479999864 222111 1122 22335689999998 8
Q ss_pred EEEEeC---CCcEEEEEcCCCCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC
Q 039302 296 FASCSV---DGNIAIWDTRVGKSALMSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 296 l~s~s~---dg~I~iwD~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+|+.-. ...|.+|.-+..+.--..+ ......|..+.||+++ .+||..-.|. |.+|-..+.. +..-+.+...
T Consensus 271 IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH--WYLKqei~~~ 346 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH--WYLKQEIRFS 346 (928)
T ss_pred EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE--EEEEEEEEcc
Confidence 887654 3445566533322111112 2345679999999999 8898877655 9999988876 3233344332
Q ss_pred -CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC----CCChHH--H---HHHhhhccc-ccCCCCCCCCce-EEeecCC
Q 039302 371 -KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL----EKDEEE--E---AEFKAKTRE-QVNAPEDLPPQL-LFIHQGQ 438 (479)
Q Consensus 371 -~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~----~~~~~~--~---~~~~~~~~~-~~~~~~~~p~~l-~~~h~g~ 438 (479)
...+..+.|+|..+..|...+.+|.+.++++.- ...... . ....+..-. ..-....+||.. .+.-.-.
T Consensus 347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~ 426 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP 426 (928)
T ss_pred CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC
Confidence 334556999998888899998888887655432 210000 0 000000000 001112344433 2333334
Q ss_pred CCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 439 KDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 439 ~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
..|.+++|++....+++-.+++.|.+|..
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 57999999999865566666555888874
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-07 Score=96.04 Aligned_cols=251 Identities=15% Similarity=0.234 Sum_probs=151.8
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
..+.|..+.|.++.. -++.+..+|.|.+....... ....+.....-...|.|++|||+..
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~------------------~~~~~E~VG~vd~GI~a~~WSPD~E- 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDP------------------DEDEIEIVGSVDSGILAASWSPDEE- 133 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCC------------------CCceeEEEEEEcCcEEEEEECCCcC-
Confidence 347889999999884 44455888999998332210 0112222222345899999999998
Q ss_pred eEEEEeCCCeEEEEecC----C---------CC--c----cccCCCCccc------------------------CCCcEE
Q 039302 248 RLVSGDCNSCIHLWEPA----S---------DA--T----WNVDPNPFIG------------------------HAASVE 284 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~----~---------~~--~----~~~~~~~~~~------------------------h~~~V~ 284 (479)
.|+..+.++++.+-.-. . +. . |......|.| +...-.
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~ 213 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRV 213 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCce
Confidence 99988888888775321 0 00 0 1100011110 223446
Q ss_pred EEEECCCCCcEEEEEeC---C---CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEeCC
Q 039302 285 DLQWSPTESDVFASCSV---D---GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLR 355 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~---d---g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~---dg~i~iwDlr 355 (479)
.|+|-.+|. +||+.+. . ..||||+-. +. ....-..-.+--.+++|.|.| ++||+.-. ...|.+|...
T Consensus 214 ~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 214 RISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred EEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecC
Confidence 789999999 8888774 2 579999865 32 222222223334678999999 88888764 3457777654
Q ss_pred CCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 356 LLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
..+. +.....+......|..++|++++ .+||..-.|. |.+|-..+..-. + .+.+...
T Consensus 290 GLrh-geF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWY-------------------L-Kqei~~~ 346 (928)
T PF04762_consen 290 GLRH-GEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWY-------------------L-KQEIRFS 346 (928)
T ss_pred CcEe-eeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEE-------------------E-EEEEEcc
Confidence 4332 11222223456789999999965 8998877655 999998876311 0 0112211
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcC-CCceEEe
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAA-DGFNILM 466 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~-dgi~iw~ 466 (479)
. ...+..+.|||..+..|..... +.+.+++
T Consensus 347 ~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 347 S-SESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred C-CCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 1 2345569999988876665555 4454443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-07 Score=80.31 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=106.9
Q ss_pred EEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 186 ASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 186 at~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
..++.|.++++.++..... + +..|.. .++.+++++++. ++++.+....|.+|.+
T Consensus 132 ~i~sndht~k~~~~~~~s~-------------------~----~~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~i 187 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSN-------------------K----FAVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAI 187 (344)
T ss_pred eeccCCcceeEEEEecCcc-------------------c----ceeeccccceeeeEEcCCCc-eEEEecCCCcceEEEe
Confidence 3457888888888876211 1 112332 388999999998 8999898999999999
Q ss_pred CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----ecCCCCEEEEEEcCCCCc-
Q 039302 264 ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF----KAHNADVNVISWNRLASC- 338 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~- 338 (479)
......... ......+..--+..|+.... .||+++.||++.|||+|....++... ..|.+.+..+.|++.|..
T Consensus 188 d~~sey~~~-~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lD 265 (344)
T KOG4532|consen 188 DDESEYIEN-IYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLD 265 (344)
T ss_pred CCccceeee-eEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcce
Confidence 775543321 12222334446778998887 99999999999999999876544332 458899999999986632
Q ss_pred EEEEEeCCCeEEEEeCCCCCC
Q 039302 339 LLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 339 ~l~sgs~dg~i~iwDlr~~~~ 359 (479)
+|+..-.-+.+.+.|+|+...
T Consensus 266 LLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 266 LLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EEEEecCcceEEEEEcccCce
Confidence 444445567899999999874
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=84.31 Aligned_cols=197 Identities=19% Similarity=0.255 Sum_probs=130.0
Q ss_pred CcceeEEEEecCC-CcEEEEE-----eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 169 QGCVNRIRAMSQN-PHICASW-----ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 169 ~~~V~~v~~~p~~-~~~lat~-----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...|....|+|.+ ...||.+ +..+.++||.+.. ...+.+-.-....-..|.|+
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---------------------~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---------------------NSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---------------------CCeeeeeeeEeecccEEEEe
Confidence 3567777888863 2334544 5678899999985 23333322223345678999
Q ss_pred CCCCCeEEE-Ee----------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--CCCcEEEEE
Q 039302 243 PVAPGRLVS-GD----------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--VDGNIAIWD 309 (479)
Q Consensus 243 ~~~~~~l~s-g~----------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~dg~I~iwD 309 (479)
+.+. +|+. .. ...+++|+++..... . ....-.++|.+.+|.|.+. .|++++ ....+.++|
T Consensus 232 ~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~----V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 232 VLGK-YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-P----VEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFD 304 (561)
T ss_pred cCCc-eEEEEEEEeeecccceeccceEEEEeeccccc-c----eeccccccceeeeecccCC-ceeEEecccccceeecc
Confidence 9987 4432 11 124678888864322 1 1124578999999999988 566554 788999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
++.. . .+......=+.+.|+|.+ ++++.++-+ |.|-+||...... .+..+.+- ..+-+.|+|++ .+
T Consensus 305 lr~N--l--~~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~---~~~~~~~~--n~s~~~wspd~-qF 373 (561)
T COG5354 305 LRGN--L--RFYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFK---VAGAFNGL--NTSYCDWSPDG-QF 373 (561)
T ss_pred cccc--e--EEecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceE---EEEEeecC--CceEeeccCCc-eE
Confidence 9975 2 333445566889999999 777766554 6899999876552 34356543 34557899965 66
Q ss_pred EEEEe------CCCcEEEEECCCC
Q 039302 387 LAVSS------ADNQLTIWDLSLE 404 (479)
Q Consensus 387 las~s------~Dg~I~iwdl~~~ 404 (479)
+.+.. .|+.|+|||+...
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEecCCCcccccCcceEEEEecCc
Confidence 65553 3889999999765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-06 Score=83.31 Aligned_cols=239 Identities=16% Similarity=0.254 Sum_probs=141.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeC-----------CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWAD-----------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG 231 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~-----------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (479)
.+.+.|++ |.-+.|+|.. ++|+|.+. ...+.|||+.+ +.....|..
T Consensus 244 ~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~t---------------------G~lkrsF~~ 300 (698)
T KOG2314|consen 244 IQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIAT---------------------GLLKRSFPV 300 (698)
T ss_pred HHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccc---------------------cchhcceec
Confidence 46677875 8889999988 77878763 25789999988 333344433
Q ss_pred ---CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-------
Q 039302 232 ---HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------- 301 (479)
Q Consensus 232 ---h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------- 301 (479)
....-.-..||.++. ++|--.. ..|.|++...... +..+.+ .-..|.+..|+|.+. +||-=+.
T Consensus 301 ~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~l--ld~Ksl--ki~gIr~FswsP~~~-llAYwtpe~~~~pa 373 (698)
T KOG2314|consen 301 IKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFML--LDKKSL--KISGIRDFSWSPTSN-LLAYWTPETNNIPA 373 (698)
T ss_pred cCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceee--eccccc--CCccccCcccCCCcc-eEEEEcccccCCcc
Confidence 122223468999987 7776654 5888888654221 111111 123455566666554 4432110
Q ss_pred --------------------------------------------------CCcEEEEEcCCCCceeeEEecCCCCEEEEE
Q 039302 302 --------------------------------------------------DGNIAIWDTRVGKSALMSFKAHNADVNVIS 331 (479)
Q Consensus 302 --------------------------------------------------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~ 331 (479)
=..+.|+.+|....++..+. -...|...+
T Consensus 374 rvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~Fa 452 (698)
T KOG2314|consen 374 RVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFA 452 (698)
T ss_pred eEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeee
Confidence 00122333332222222221 234577889
Q ss_pred EcCCCCcEEEEEeCC--CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE---eCCCcEEEEECCCCCC
Q 039302 332 WNRLASCLLASGSDD--GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS---SADNQLTIWDLSLEKD 406 (479)
Q Consensus 332 ~~p~~~~~l~sgs~d--g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~---s~Dg~I~iwdl~~~~~ 406 (479)
|-|.|..+.+..+.+ .++.+|-+.+.......+..+. ....+.|.|+|.+ .+++.+ |..|.+.++|+....
T Consensus 453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~- 528 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD- 528 (698)
T ss_pred eccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceEEEecchhh-
Confidence 999995554444443 4788998885333234555554 3567899999977 665554 457899999998632
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
.....+..|...+.+.|.|.|.+++.+.+.
T Consensus 529 -----------------------~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 529 -----------------------LKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred -----------------------hhhccCccccccccceECCCCCEEEEeeeh
Confidence 112233344568889999999866665553
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-07 Score=93.96 Aligned_cols=195 Identities=13% Similarity=0.209 Sum_probs=132.6
Q ss_pred CceeEEEEec-------CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec
Q 039302 158 TPILQLRKVA-------HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG 230 (479)
Q Consensus 158 ~p~~~~~~~~-------H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479)
.|++....+. ....+.|++++. .++|-|+.+|.|++++.+. .+ .+..
T Consensus 21 ePklkY~Ri~n~~~~~~~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~----------------------~~-~~~~ 74 (846)
T KOG2066|consen 21 EPKLKYERISNLVKNFLQNDAISCCAVHD---KFFALGTHRGAVYLTTCQG----------------------NP-KTNF 74 (846)
T ss_pred CccceehhhhcccHHHHhhhHHHHHHhhc---ceeeeccccceEEEEecCC----------------------cc-cccc
Confidence 6666654443 245677777764 6899999999999999876 22 2233
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC----CCcEEEEEeCCCcEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT----ESDVFASCSVDGNIA 306 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~s~s~dg~I~ 306 (479)
.|+.. ...|. +++||+.||+|.|-.+-+..... ......++.+|+++|+ ....|++|+.-| +.
T Consensus 75 ~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~~-----~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lv 141 (846)
T KOG2066|consen 75 DHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEIT-----QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV 141 (846)
T ss_pred ccccc------ccCCc-eEEEecCCCcEEEeeccCCccce-----eEecCCcceeEEeccchhhhhhhheeecCcce-EE
Confidence 45433 55666 99999999999999887754421 2233568999999998 122799999988 77
Q ss_pred EEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC------eEEEEE
Q 039302 307 IWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP------VTSIEW 379 (479)
Q Consensus 307 iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~------I~~v~~ 379 (479)
++.-+-... ....+....+.|.+++|.- ++||-++++| |+|||+...+ .+..+...... -..+.|
T Consensus 142 L~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~----~l~~i~~p~~~~R~e~fpphl~W 213 (846)
T KOG2066|consen 142 LSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQ----RLTNIPPPSQSVRPELFPPHLHW 213 (846)
T ss_pred EehhhhhcCccceeeecCccceEEEEecC---cEEEEecCCC-cEEEeccccc----eeeccCCCCCCCCcccCCCceEe
Confidence 765432221 1123566678999999983 7888888776 7999998776 34444332222 245788
Q ss_pred eCCCCCEEEEEeCCCcEEEEECC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.+. ..|+.| ...+|+|..++
T Consensus 214 ~~~--~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 214 QDE--DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred cCC--CeEEEe-cCCeEEEEEEe
Confidence 873 455555 44578888888
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=92.57 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=103.7
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
.+..|+++.|...++ ++..|..+|.|...|++....-........-|.++|++++.-......|++.+.+|+|++||+|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 456899999999887 9999999999999999875321111233445889999999877444489999999999999999
Q ss_pred CCCc--eeeEEecCCCCEEEEEE--cCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC----CCeEEEEEe
Q 039302 312 VGKS--ALMSFKAHNADVNVISW--NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK----HPVTSIEWS 380 (479)
Q Consensus 312 ~~~~--~~~~~~~h~~~v~~l~~--~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~----~~I~~v~~s 380 (479)
..+. .+..+.+|-..-.-+-+ ++.. ..++++++|...+||.++.+. .+.++.... ..+.+++|.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh----Ll~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH----LLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred hhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc----eeeccCCCCccccccccceehh
Confidence 8752 27777887543333322 3444 678889999999999999887 666655322 234455554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-05 Score=80.87 Aligned_cols=197 Identities=11% Similarity=0.039 Sum_probs=112.6
Q ss_pred cceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+.+..-+|+|++..+++..+. ...|+++|+.+ ++. ..+....+.....+|+|++.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------g~~-~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------GKK-EKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC---------------------CcE-EEEecCCCcEEeeEECCCCC
Confidence 367789999999654543333 35688888865 222 22222344566788999998
Q ss_pred CeEEEEeCC--CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCceeeEEec
Q 039302 247 GRLVSGDCN--SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 247 ~~l~sg~~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~~~~~~~~~~~~ 322 (479)
..+++.+.+ ..|.++++.++... .+..+........|+|+|+.++++....+ .|.+.|+.++........+
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-----QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-----EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 444454444 46777787664321 22222322345589999985555554444 5777788766422222221
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 323 HNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
. ....|+|++..++++.... ..|.+.|+..+. ...+... .......|+|++..++.+....+
T Consensus 321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----eEECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence 1 1248999995454444433 367888887665 2333322 23346889997744444443344
Q ss_pred c--EEEEECCC
Q 039302 395 Q--LTIWDLSL 403 (479)
Q Consensus 395 ~--I~iwdl~~ 403 (479)
. +.+.++..
T Consensus 391 ~~~L~~~~l~g 401 (419)
T PRK04043 391 QSALGIIRLNY 401 (419)
T ss_pred cEEEEEEecCC
Confidence 4 44555543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-05 Score=73.61 Aligned_cols=229 Identities=15% Similarity=0.085 Sum_probs=142.4
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe
Q 039302 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
++.|.+....++++-...+.|+.|+.... ....+.... ...+++...+ +.|+.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~~~~~~~~~--~~G~~~~~~~-g~l~v~~ 58 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------EVEVIDLPG--PNGMAFDRPD-GRLYVAD 58 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------EEEEEESSS--EEEEEEECTT-SEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------eEEEEecCC--CceEEEEccC-CEEEEEE
Confidence 56788845488888778999999998772 112222222 6677777333 3677777
Q ss_pred CCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCC--------CcEEEEEcCCCCceeeEEecCC
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVD--------GNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~d--------g~I~iwD~~~~~~~~~~~~~h~ 324 (479)
.. .+.++|+.++............ .....+++++.|+|. +.++.... |.|..++.. ++ +......-
T Consensus 59 ~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~ 133 (246)
T PF08450_consen 59 SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGL 133 (246)
T ss_dssp TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEE
T ss_pred cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--EEEEecCc
Confidence 54 4555688775332211111112 345789999999998 77776543 457777776 32 23333334
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC---ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD---SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~---~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
...+.|+|+|++..++++-+..+.|..+++....... ..+..+..-.+..-.+++..++ ++.++....+.|.+++.
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDP 212 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEET
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECC
Confidence 5679999999996667788888999999986443200 1122222222347789999855 88888778999999998
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTA 458 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~ 458 (479)
. ++ .+.........+++++|. |+...|+++++
T Consensus 213 ~-G~------------------------~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 213 D-GK------------------------LLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp T-SC------------------------EEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred C-cc------------------------EEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 7 32 222233333479999995 56566777765
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.8e-05 Score=68.82 Aligned_cols=210 Identities=11% Similarity=0.167 Sum_probs=137.9
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc----------eEEEEeC
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE----------GYAIDWN 242 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s 242 (479)
+-++++++++.++++--..|.|.++-++..... .+...+..|.+. +....+.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l------------------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL------------------QPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcc------------------ccceeeeecCCCCCCccccCCccceeeeC
Confidence 889999999666666566799999999774211 111111123322 7788999
Q ss_pred CCCCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVAPGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|++. +|++.+. --.|.+|++..+.........+ .-...-+.|.|+|+++...+.+--+++|.+|........+..+.
T Consensus 154 P~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 154 PDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CCCC-EEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 9998 8887763 2389999998654433222222 33456788999999996666677899999999987422222221
Q ss_pred ---------cCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 322 ---------AHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 322 ---------~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
........|..+++| ++|.++. ....|.+|.+......-..+.....+...-+...++|.+ ++|+++.
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~ 309 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAAN 309 (346)
T ss_pred eeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEc
Confidence 123467889999999 5555543 334788888766543111223333355557889999965 7777776
Q ss_pred C-CCcEEEEECCCC
Q 039302 392 A-DNQLTIWDLSLE 404 (479)
Q Consensus 392 ~-Dg~I~iwdl~~~ 404 (479)
. ...|.+|.....
T Consensus 310 q~sd~i~vf~~d~~ 323 (346)
T COG2706 310 QKSDNITVFERDKE 323 (346)
T ss_pred cCCCcEEEEEEcCC
Confidence 6 457999988765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-06 Score=86.81 Aligned_cols=199 Identities=14% Similarity=0.174 Sum_probs=138.1
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.||.+.|.-+.|..+. .-|.|...+|.|.||-+-+.. .-...+-.....-|.+|.
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgs-------------------W~EEMiNnRnKSvV~Sms 122 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGS-------------------WCEEMINNRNKSVVVSMS 122 (1189)
T ss_pred hhhhhccCcceEEEEEecccc-ccccccCCCceEEEEeeeccc-------------------HHHHHhhCcCccEEEEEE
Confidence 335688999999999999988 566677889999999986620 111111122345788999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC------
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------ 314 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------ 314 (479)
|+.+|. .++..-.||.|.+=.+.....|. +.+.+. ....+.|+++.. .++.+-..|.+++||....-
T Consensus 123 Wn~dG~-kIcIvYeDGavIVGsvdGNRIwg---KeLkg~--~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~ 195 (1189)
T KOG2041|consen 123 WNLDGT-KICIVYEDGAVIVGSVDGNRIWG---KELKGQ--LLAHVLWSEDLE-QALFKKANGETHLYDNQGNFERKLEK 195 (1189)
T ss_pred EcCCCc-EEEEEEccCCEEEEeeccceecc---hhcchh--eccceeecccHH-HHHhhhcCCcEEEecccccHHHhhhh
Confidence 999998 99999999999887776655444 223221 234689999988 77777788999999986541
Q ss_pred ceeeEE----ecCCCCEEEEEEc--------CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 315 SALMSF----KAHNADVNVISWN--------RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 315 ~~~~~~----~~h~~~v~~l~~~--------p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.+.... ......|..+.|+ |+. ..||.+-..|.+.|-.-.+... |+..-. .-.|..+.|+++
T Consensus 196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~---Pvv~dt--gm~~vgakWnh~ 269 (1189)
T KOG2041|consen 196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPE---PVVVDT--GMKIVGAKWNHN 269 (1189)
T ss_pred ceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCC---CeEEec--ccEeecceecCC
Confidence 121111 2223346677775 455 6899999999998854443332 444333 367899999996
Q ss_pred CCCEEEEEeCC
Q 039302 383 EGSTLAVSSAD 393 (479)
Q Consensus 383 ~~~~las~s~D 393 (479)
+ .+||.+|.|
T Consensus 270 G-~vLAvcG~~ 279 (1189)
T KOG2041|consen 270 G-AVLAVCGND 279 (1189)
T ss_pred C-cEEEEccCc
Confidence 5 999999875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.2e-05 Score=73.59 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=132.0
Q ss_pred EecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceEEEE
Q 039302 177 AMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGYAID 240 (479)
Q Consensus 177 ~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~ 240 (479)
++|++..+.++.+ .+..|.+||..+ .+.+..+..- ...-..++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t---------------------~~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT---------------------HLPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc---------------------CcEEeEEccCCCchhhccCccceEE
Confidence 9999977777777 789999999998 3444444321 22344789
Q ss_pred eCCCCCCeEEEEe-C-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-e
Q 039302 241 WNPVAPGRLVSGD-C-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-L 317 (479)
Q Consensus 241 ~s~~~~~~l~sg~-~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~ 317 (479)
++|+++ +|+... . +..|.+.|+.+++...... . .+...-...++ .. +.+-+.||.....-+...... .
T Consensus 112 ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~--v---p~~~~vy~t~e-~~--~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 112 LTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMD--V---PDCYHIFPTAN-DT--FFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEe--C---CCCcEEEEecC-Cc--cEEEeecCceEEEEecCCCceEE
Confidence 999998 777655 3 7899999998765422100 1 11111111111 11 112233444444333322110 1
Q ss_pred eE---EecCCCCE-EEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCC-ceEEEee-------cCCCCeEEEEEeCCCC
Q 039302 318 MS---FKAHNADV-NVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGD-SVVAHFE-------YHKHPVTSIEWSPHEG 384 (479)
Q Consensus 318 ~~---~~~h~~~v-~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~-~~~~~~~-------~h~~~I~~v~~sp~~~ 384 (479)
.+ +..-...+ ..-.|.+ ++ .++..... |.|.+.|+....... .++..+. ...+.+.-++++|+++
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100000 0003455 56 56655555 999999975433110 1222221 1344455699999775
Q ss_pred CEEEEE-e--------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCC-cEE
Q 039302 385 STLAVS-S--------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVP-GMI 454 (479)
Q Consensus 385 ~~las~-s--------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~-~ll 454 (479)
.+++.. + ..+.|.++|..+.+ .+.....| ..+..++++|++. .++
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~k------------------------vi~~i~vG-~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGK------------------------RLRKIELG-HEIDSINVSQDAKPLLY 315 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCe------------------------EEEEEeCC-CceeeEEECCCCCeEEE
Confidence 555433 1 12579999998874 22333333 4799999999997 666
Q ss_pred EEEcCCC-ceEEeeecc
Q 039302 455 VSTAADG-FNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dg-i~iw~~~~~ 470 (479)
++...++ |.+++..+.
T Consensus 316 vtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 316 ALSTGDKTLYIFDAETG 332 (352)
T ss_pred EeCCCCCcEEEEECcCC
Confidence 6665556 999988665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-06 Score=79.41 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=131.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCce---------------EEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGH---------------VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~---------------V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
...|. .|.-+.|+|.+ .+|.|++..+. +.+||+.. +..+..+
T Consensus 68 ~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s---------------------g~iv~sf 124 (561)
T COG5354 68 RFRHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS---------------------GMIVFSF 124 (561)
T ss_pred eeecC-CceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccC---------------------ceeEeec
Confidence 33443 58888899988 78888876554 88999887 5566666
Q ss_pred cCCCCc--eE-EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCc-EEEE-----E
Q 039302 230 GGHKDE--GY-AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESD-VFAS-----C 299 (479)
Q Consensus 230 ~~h~~~--v~-~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~-~l~s-----~ 299 (479)
.+...+ ++ -+.|+-+.. ++|-- ....++|+++ +..... .++..- ...|.+..|+|.+.+ .||. .
T Consensus 125 ~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~~---~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 125 NGISQPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEI-TDNIEE---HPFKNLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred cccCCcccccceeeeeecch-hhhhh-ccCeEEEEec-CCcccc---CchhhccccceeeEEecCCCCCceEEEEccccC
Confidence 665555 66 788888776 54444 3458999997 433322 222222 356889999997432 3443 4
Q ss_pred eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEeCCCCCCCCceEEEeec
Q 039302 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS----------DDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 300 s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs----------~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
+..++++||.+.... .+.+..-....=..+.|++.+..+|+-.- ....++|++++.... ++. ..
T Consensus 199 ~kpa~~~i~sIp~~s-~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~--~~ 272 (561)
T COG5354 199 NKPAMVRILSIPKNS-VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVE--KD 272 (561)
T ss_pred CCCcEEEEEEccCCC-eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---cee--cc
Confidence 568899999998654 33332222233356889998844433221 124678888885442 222 25
Q ss_pred CCCCeEEEEEeCCCCCEEEEE--eCCCcEEEEECCCC
Q 039302 370 HKHPVTSIEWSPHEGSTLAVS--SADNQLTIWDLSLE 404 (479)
Q Consensus 370 h~~~I~~v~~sp~~~~~las~--s~Dg~I~iwdl~~~ 404 (479)
-.++|....|.|++ +.|++. -.+-.+.++|++..
T Consensus 273 ~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 273 LKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeeeecccC-CceeEEecccccceeecccccc
Confidence 57899999999976 555444 46888999999865
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.3e-08 Score=94.70 Aligned_cols=170 Identities=19% Similarity=0.283 Sum_probs=120.8
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 225 ~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
.+..|.||+..|.+++--.+.+ -+++++.|.+|++|.++..+.. .....++..|+.+|+++.|-.+.+ .+++ .
T Consensus 727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~S--c 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIAS--C 802 (1034)
T ss_pred eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeee--c
Confidence 4567889999888887665554 8999999999999999764331 112356889999999999998776 5654 4
Q ss_pred CCcEEEEEcCCCCceeeEE---ecCCCCEEEEEEcC-CCCcEEEE-EeCCCeEEEEeCCCCCCCCceEEEee-----cCC
Q 039302 302 DGNIAIWDTRVGKSALMSF---KAHNADVNVISWNR-LASCLLAS-GSDDGTFSIHDLRLLKGGDSVVAHFE-----YHK 371 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~---~~h~~~v~~l~~~p-~~~~~l~s-gs~dg~i~iwDlr~~~~~~~~~~~~~-----~h~ 371 (479)
||-|++||.--++ ++... ..|...-+..+.-. +. .++.+ ++...+|+++|.|... .+..++ +..
T Consensus 803 D~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~-~iliAgcsaeSTVKl~DaRsce----~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDR-HILIAGCSAESTVKLFDARSCE----WTCELKVCNAPGPN 876 (1034)
T ss_pred cCcceeecccccc-hhHhhhcCcccCCCceeEecccCcc-hheeeeccchhhheeeeccccc----ceeeEEeccCCCCc
Confidence 7999999976654 22211 22332222222222 33 44444 4788999999999877 333333 334
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.-+.+++..|.+ +.++++-..|+|.+.|.++++
T Consensus 877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred hheeEEEeccCc-chhhHHhcCCcEEEEecCCCc
Confidence 568899999855 999999999999999999886
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-09 Score=103.41 Aligned_cols=207 Identities=18% Similarity=0.248 Sum_probs=144.0
Q ss_pred CCceEEEEeCCCCC-CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe----CCCcEEE
Q 039302 233 KDEGYAIDWNPVAP-GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS----VDGNIAI 307 (479)
Q Consensus 233 ~~~v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s----~dg~I~i 307 (479)
...+.|++++.+.. -+++.|..+|.|.+-.++...... .....+|...+++++|++-+.++||+|- .|..+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs--~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS--AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc--ceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 34667888776554 389999999999999886543211 1335567889999999998877888874 3678999
Q ss_pred EEcCCCCc-eeeE--Ee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 308 WDTRVGKS-ALMS--FK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 308 wD~~~~~~-~~~~--~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
||+.+.-. |... +. ......++++|..+. .++++|.....++++|+|.... .... ..+..+..+...|..
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~---~~~s--vnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD---SVSS--VNTKYVQGITVDPFS 207 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh---hhhh--hhhhhcccceecCCC
Confidence 99987611 1111 12 244567899999777 8999999999999999995432 1222 234456677788866
Q ss_pred CCEEEEEeCCCcEEEEE-CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC---CCeeeEEEeCCCCcEEEEEcC
Q 039302 384 GSTLAVSSADNQLTIWD-LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ---KDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwd-l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~---~~V~~v~w~p~~~~ll~s~~~ 459 (479)
++++++.. ||.|.+|| .+..+.+.. ...|... ..+..++|+|..++++++...
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~----------------------~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQ----------------------IILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHH----------------------HHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 68888876 99999999 444332211 1112111 138889999999999999988
Q ss_pred CC--ceEEeeecc
Q 039302 460 DG--FNILMPSNI 470 (479)
Q Consensus 460 dg--i~iw~~~~~ 470 (479)
+. |+.+.+..+
T Consensus 265 dS~tIrlydi~~v 277 (783)
T KOG1008|consen 265 DSITIRLYDICVV 277 (783)
T ss_pred CcceEEEeccccc
Confidence 87 666666555
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-05 Score=80.23 Aligned_cols=187 Identities=9% Similarity=0.009 Sum_probs=111.1
Q ss_pred ceEEEEeCCCCCCeEEEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC--CcEEEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD--GNIAIWD 309 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--g~I~iwD 309 (479)
......|+|++...++..+. ...|.++|+.++.... +....+.+....|+|+++.++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-----lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-----IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-----EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 77889999999732543333 3579999997754422 222344566778999998566666555 4577778
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+.++. ...+..+........|+|++..++++....+ .|.+.|+..+. . ..+...... ...|+|++..++
T Consensus 264 l~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~----~-~rlt~~g~~--~~~~SPDG~~Ia 334 (419)
T PRK04043 264 TNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS----V-EQVVFHGKN--NSSVSTYKNYIV 334 (419)
T ss_pred CCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC----e-EeCccCCCc--CceECCCCCEEE
Confidence 77664 3334333333345689999955555554444 57777887655 2 122111111 248999774444
Q ss_pred EEEeCC--------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 388 AVSSAD--------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 388 as~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
+++... ..|.+.|+..+.. +.+... + ......|+|++..++.+...
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~-----------------------~~LT~~-~--~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYI-----------------------RRLTAN-G--VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCe-----------------------EECCCC-C--CcCCeEECCCCCEEEEEEcc
Confidence 444332 2567777765421 222211 1 22358899999877777665
Q ss_pred CC
Q 039302 460 DG 461 (479)
Q Consensus 460 dg 461 (479)
++
T Consensus 389 ~~ 390 (419)
T PRK04043 389 GN 390 (419)
T ss_pred CC
Confidence 55
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-07 Score=86.08 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=106.7
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc--EEEEEeCCCcEEEEEcCCC
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD--VFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--~l~s~s~dg~I~iwD~~~~ 313 (479)
...+..++.+. +||.+..+....++++..... .........-...-+.+.|...... ++-..+....+.+|....+
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 33445566665 777777777777777755432 1000000011122233444444442 2223344455556655543
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
+...+.+|-.-+..++|+|++ .+|+++..|..|+|-...... .+..| -||+.-|..++.-+ + +.|++||.
T Consensus 143 --~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f----~IesfclGH~eFVS~isl~~-~-~~LlS~sG 213 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF----VIESFCLGHKEFVSTISLTD-N-YLLLSGSG 213 (390)
T ss_pred --CcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc----chhhhccccHhheeeeeecc-C-ceeeecCC
Confidence 345567899999999999999 999999999999997776554 45444 46999999999987 3 67999999
Q ss_pred CCcEEEEECCCCCCh
Q 039302 393 DNQLTIWDLSLEKDE 407 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~ 407 (479)
|++|++||+.+++..
T Consensus 214 D~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLL 228 (390)
T ss_pred CCcEEEEecccCCcc
Confidence 999999999988743
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.1e-06 Score=73.67 Aligned_cols=201 Identities=13% Similarity=0.170 Sum_probs=113.1
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCC----
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVA---- 245 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~---- 245 (479)
.=.+++|+|++ .+||.+...|+|++||+....-.. ..+...+.+ -...|-+|.|....
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~----------------I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV----------------IPPAMSFPGDLSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEE----------------cCcccccCCccccceeeeEeeccccccc
Confidence 35679999999 899999999999999987521111 011111111 12456666665443
Q ss_pred -CCeEEEEeCCCeEEEEecCCC--Cccc-cCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 246 -PGRLVSGDCNSCIHLWEPASD--ATWN-VDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 246 -~~~l~sg~~dg~I~lwd~~~~--~~~~-~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
...|+.-...|.++-|-+..+ +... .....+.. +...|+++.++|..+ +|++||.... ..+ . -
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~------~~~---~--s 175 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQN------QDG---M--S 175 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCC------CCc---c--c
Confidence 125677777888877776332 1110 00011222 356899999999998 6666664322 110 0 1
Q ss_pred ecCCCCEEEEEEcCCCCcEEE-EEeCCCe------EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 321 KAHNADVNVISWNRLASCLLA-SGSDDGT------FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~-sgs~dg~------i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+....+++-..-.+.+.+.. +...|+. ..+|.+-+.. .......-...|..|..+|++ ..||+...+
T Consensus 176 ~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~----~fs~~~~~~d~i~kmSlSPdg-~~La~ih~s 250 (282)
T PF15492_consen 176 KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK----FFSRQGQEQDGIFKMSLSPDG-SLLACIHFS 250 (282)
T ss_pred cccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee----eeeccccCCCceEEEEECCCC-CEEEEEEcC
Confidence 122333444333333323322 2222222 1233322221 111112245689999999965 999999999
Q ss_pred CcEEEEECCCCC
Q 039302 394 NQLTIWDLSLEK 405 (479)
Q Consensus 394 g~I~iwdl~~~~ 405 (479)
|.|.+|++....
T Consensus 251 G~lsLW~iPsL~ 262 (282)
T PF15492_consen 251 GSLSLWEIPSLR 262 (282)
T ss_pred CeEEEEecCcch
Confidence 999999998764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.7e-07 Score=82.62 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=74.6
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
.++...+.+|...|..|+|+|...|+|..++.+..|.|.|+.+... ...+..+ ..+++++|.-++.+++..|-..
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcceeEEeccC
Confidence 3444566778889999999999999999999999999999987543 2445555 7899999999999899999999
Q ss_pred CcEEEEEcCCCCce
Q 039302 303 GNIAIWDTRVGKSA 316 (479)
Q Consensus 303 g~I~iwD~~~~~~~ 316 (479)
|.|.|||+|....+
T Consensus 258 G~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 258 GMVLVYDMRQPEGP 271 (463)
T ss_pred ceEEEEEccCCCch
Confidence 99999999987543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=86.47 Aligned_cols=158 Identities=15% Similarity=0.243 Sum_probs=123.4
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-----------CcEEEEEeCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-----------SDVFASCSVDG 303 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-----------~~~l~s~s~dg 303 (479)
.-.+++|+|.| .||-|+ ...|.+-|..+.+. .+.+.-|...|+.+.|.|.. .-++|++...|
T Consensus 17 N~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~----iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQL----IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccCccc--eEEEec-CceEEEEehhhhhh----hhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 46689999987 788887 45788888776544 35577789999999997742 22577888899
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
.|.+||..... .+..+..|..++..++|-+.. ..+|++-....+|.+|+..++. .+...........++.+.
T Consensus 90 rIil~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~----k~Wk~~ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 90 RIILVDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE----KFWKYDYSHEILSCFRVD 164 (1062)
T ss_pred cEEEEEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc----eeeccccCCcceeeeeeC
Confidence 99999999874 566678888899999986532 2566666777899999999988 566666666677889999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|.+.+.|+..+..|.|.+-+.-..
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~ 188 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGL 188 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCC
Confidence 999899998888998888776544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-08 Score=100.33 Aligned_cols=194 Identities=15% Similarity=0.223 Sum_probs=137.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..|....+|++|+-.. +.|+.|+..|.|++|++.+ +.......+|...|+-+.=+.
T Consensus 1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s---------------------G~~e~s~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS---------------------GSMEESVNCHQSAVTLVEPSV 1153 (1516)
T ss_pred hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccC---------------------ccccccccccccccccccccC
Confidence 455788999999999977 7788999999999999998 556667789999999999999
Q ss_pred CCCCeEEEEeCCC-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE-Ee
Q 039302 244 VAPGRLVSGDCNS-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-FK 321 (479)
Q Consensus 244 ~~~~~l~sg~~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-~~ 321 (479)
+|.-+|.+++... -..+|++...... ...|. .-.++.|+.... .-+.|.......|||+.++. ++.+ +.
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~~~---~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~-~l~tylt 1224 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGGP---RHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCS-PLQTYLT 1224 (1516)
T ss_pred CcceeeeeccccCchHHHhccccccCc---ccccc----ccceeehhhhHH-HHHhcccccceEEEecccCc-HHHHhcC
Confidence 9884444444443 5789998663221 12232 345788887654 33445555679999999986 3333 21
Q ss_pred ---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 322 ---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 322 ---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
+.+..-++..|+|.. .+++ .|| .+||+|... .++.|...+..+ .--|+|++ .-++.-++ |
T Consensus 1225 ~~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~----aIh~FD~ft~~~-~G~FHP~g-~eVIINSE-----I 1287 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPE----AIHRFDQFTDYG-GGGFHPSG-NEVIINSE-----I 1287 (1516)
T ss_pred cchhhhhhccccccCCCc-ceEe---eCc--eeeeeccHH----HHhhhhhheecc-cccccCCC-ceEEeech-----h
Confidence 223334889999998 6666 466 589999886 677776555332 34599966 66666654 8
Q ss_pred EECCCCC
Q 039302 399 WDLSLEK 405 (479)
Q Consensus 399 wdl~~~~ 405 (479)
||+++.+
T Consensus 1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred hhhHHHH
Confidence 9998863
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=58.83 Aligned_cols=37 Identities=41% Similarity=0.815 Sum_probs=35.0
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
++.++.+|..+|++|+|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 78899999999999999996 49999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-06 Score=80.57 Aligned_cols=277 Identities=14% Similarity=0.079 Sum_probs=175.8
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..-|...|+.+..... .++.+++-||.++.|--..-. ..+-+..+..|...+.+++.+-+
T Consensus 5 symhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~d 64 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYD 64 (558)
T ss_pred hhcccceeeeEeeehh--heEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhcccc
Confidence 3457888888776654 588899999999999865410 13445567788889999999999
Q ss_pred CCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc-EEEE-EeCCCcEEEEEcCCCCc-eeeEE
Q 039302 245 APGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD-VFAS-CSVDGNIAIWDTRVGKS-ALMSF 320 (479)
Q Consensus 245 ~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-~l~s-~s~dg~I~iwD~~~~~~-~~~~~ 320 (479)
+- .++|++. |..++++|+..-..... ..+.--.+.+..+ .+|.... .++. .-.+|.|.++|-+.... ....-
T Consensus 65 g~-L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 65 GW-LFRSVEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred ce-eEeeccCcccceeEEEeeccchhhh--cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 87 8888777 99999999977544321 1111122333322 2332221 3333 33579999999887653 33344
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCC----------ceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGD----------SVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~----------~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.-|..+|.++.+++.+ ..+++....|.|.-|.... .+.+. .-+..+...+...+++.|+|.+ ..+++
T Consensus 141 klH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qist 218 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQIST 218 (558)
T ss_pred ccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-Ccccc
Confidence 6799999999999999 7888888899999998872 22110 1122233345678899999965 89999
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC----------ceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP----------QLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
-+.|..|+++++.+++-..+..+...........+..++. .-+-.| +...-+.+.|...+. +|.-+.-
T Consensus 219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~-flly~t~ 296 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGN-FLLYGTI 296 (558)
T ss_pred cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCC-EEEeecc
Confidence 9999999999999987543322211110000001111100 000111 223456678888886 5555555
Q ss_pred CCceEEeeec
Q 039302 460 DGFNILMPSN 469 (479)
Q Consensus 460 dgi~iw~~~~ 469 (479)
=||+|+++.+
T Consensus 297 ~gikvin~~t 306 (558)
T KOG0882|consen 297 LGIKVINLDT 306 (558)
T ss_pred eeEEEEEeec
Confidence 6677777654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-06 Score=88.62 Aligned_cols=186 Identities=13% Similarity=0.223 Sum_probs=135.1
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
..++-|+-...+..+|+++..... ...-..+.|.-+.- +++ ++.+|...|+|.+-|.++.+ .+.++.+|.+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r----~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~s 219 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETR----TTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGS 219 (1118)
T ss_pred cceeecchhhheeeeecccceeee----eeeccCCceEEEEe--cCc-EEEeecccceEEeecCCcCc-eeeeeeccccc
Confidence 377788878888888987754421 11112223554543 355 88999999999999999986 88999999998
Q ss_pred EEEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 327 VNVISWNRLASCLLASGSDD---------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~d---------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
|..+... | ++|+++|.. .-|+|||+|+.+ .+..+..+.++ .-+.|+|.-...+++++.-|+..
T Consensus 220 iSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr----al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 220 ISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR----ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhh----ccCCcccccCc-hhhhhcccccceEEEEeccccee
Confidence 8766554 5 788888764 457999999988 45555555555 66889998888999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+-|..... ..+.....+|.....+..+.+++++. .++-+..+| |++|...+
T Consensus 292 ~vd~~~ls--------------------NP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 292 FVDTATLS--------------------NPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred eccccccC--------------------CCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCCC
Confidence 99944432 12234566666556799999999996 556565555 99998443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.1e-06 Score=88.02 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=130.7
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..+.-|+-...+..+|+.+ .+......-....|+-|.-+ +. .|.+|+..|+|.+-|
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~---------------------~~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD 203 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNT---------------------EKETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRD 203 (1118)
T ss_pred cceeecchhhheeeeeccc---------------------ceeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeec
Confidence 3444556666677777776 23333332233346655543 34 899999999999999
Q ss_pred cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCceeeEEecCCCCEEEEEEc
Q 039302 263 PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV---------DGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~ 333 (479)
+++... ...+..|++.|.++... |+ +|++||. |..|++||+|..+ .+.-+.-+.+ -.-+.|+
T Consensus 204 ~~s~~~----iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~-P~flrf~ 274 (1118)
T KOG1275|consen 204 PNSFET----IHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYG-PQFLRFH 274 (1118)
T ss_pred CCcCce----eeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhh-ccCCcccccC-chhhhhc
Confidence 987554 46799999999887765 55 8999885 5568999999875 2222332333 2567889
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
|.-...+++.+..|...+-|......+..-+..+......|..+.+++++ ..||.|..+|.|.+|-
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 98878999999999999999554443222344444455669999999955 9999999999999998
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=81.19 Aligned_cols=123 Identities=19% Similarity=0.311 Sum_probs=92.3
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.+.+|...|.+++|+|...-++..++.+.+|+|.|+++.. .+..+.++ ..+.+++|..+..++|..|-..|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 4567788999999999887789999999999999999974 67777777 789999999999899999999999999999
Q ss_pred CCCCCCCceEEEeec--CCCCeEEEEEeCC-----CCCEEEEEeCCCcEEEEECCCC
Q 039302 355 RLLKGGDSVVAHFEY--HKHPVTSIEWSPH-----EGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 355 r~~~~~~~~~~~~~~--h~~~I~~v~~sp~-----~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|.... ++..+.+ -..+|..|+.-+- .+.+|+..+.+ +..|.+...
T Consensus 266 R~~~~---~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s 317 (463)
T KOG1645|consen 266 RQPEG---PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFS 317 (463)
T ss_pred cCCCc---hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcc
Confidence 98875 4544443 2345554443221 22455544443 556766544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.9e-05 Score=66.79 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=111.2
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCC-cc-cCCCcEEEEEECCCC-----CcEEEEEeCCCcEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNP-FI-GHAASVEDLQWSPTE-----SDVFASCSVDGNIAI 307 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~-~~-~h~~~V~~l~~sp~~-----~~~l~s~s~dg~I~i 307 (479)
.=..++|||++. .||.+...|+|+++|+............ +. .-..+|..+.|.+.. ...|++-...|.++=
T Consensus 45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCc-EEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456899999998 9999999999999999754332221111 11 124567777775443 225667777888887
Q ss_pred EEcCCC--C--ceeeE--Ee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 308 WDTRVG--K--SALMS--FK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 308 wD~~~~--~--~~~~~--~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
|-+..+ + ....+ +. .+...|+++.|+|.. ++|+.||.... .... -++-...+++-..-
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~--------s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM--------SKASSCGLTAWRIL 188 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc--------ccccccCceEEEEc
Confidence 775322 1 12222 22 246789999999988 66666654332 0000 01112233332222
Q ss_pred CCCCCEE-EEEeCCCc------EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC--CCCeeeEEEeCCCC
Q 039302 381 PHEGSTL-AVSSADNQ------LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG--QKDLKELHWHTQVP 451 (479)
Q Consensus 381 p~~~~~l-as~s~Dg~------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g--~~~V~~v~w~p~~~ 451 (479)
...+.+. ++...|+. ..+|.+-. -.+|...+ +..|..+..+|++.
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--------------------------~~~fs~~~~~~d~i~kmSlSPdg~ 242 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPS--------------------------FKFFSRQGQEQDGIFKMSLSPDGS 242 (282)
T ss_pred CCCCcEEEccccCccccccccccceeeccc--------------------------eeeeeccccCCCceEEEEECCCCC
Confidence 2122222 22222221 12332221 12333333 33699999999996
Q ss_pred cEEEEEcCCC-ceEEeeecc
Q 039302 452 GMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 452 ~ll~s~~~dg-i~iw~~~~~ 470 (479)
+||+...+| |.+|.+.++
T Consensus 243 -~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 243 -LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred -EEEEEEcCCeEEEEecCcc
Confidence 888888888 999999887
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.7e-07 Score=56.47 Aligned_cols=37 Identities=38% Similarity=0.741 Sum_probs=35.1
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
++..+.+|...|++|+|+|++ .+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 677889999999999999998 9999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-05 Score=71.05 Aligned_cols=149 Identities=12% Similarity=0.143 Sum_probs=114.9
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCceeeE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-NIAIWDTRVGKSALMS 319 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-~I~iwD~~~~~~~~~~ 319 (479)
|++....+++..| -|...|.+...+-. ...+|.+.|.-..+.-+.. -++.|..|| .|-|+|.+++. +..
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~------iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e--~kr 396 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYS------IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE--VKR 396 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCee------EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce--EEE
Confidence 4444433777777 57777777654322 2346777898888887777 788999999 99999999874 566
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC----c
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN----Q 395 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg----~ 395 (479)
+...-+.|.++..+++| .+++.+.+...|.+.|+.++. +...-+...+-|+.+.|||+. .+||-+--+| .
T Consensus 397 ~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~ 470 (668)
T COG4946 397 IEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQS 470 (668)
T ss_pred eeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCc-eeEEEecCcceeeee
Confidence 77777889999999999 888999999999999999988 333334456789999999965 8888876665 5
Q ss_pred EEEEECCCCC
Q 039302 396 LTIWDLSLEK 405 (479)
Q Consensus 396 I~iwdl~~~~ 405 (479)
|+++|+...+
T Consensus 471 Iklydm~~~K 480 (668)
T COG4946 471 IKLYDMDGGK 480 (668)
T ss_pred EEEEecCCCe
Confidence 8899988754
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8e-05 Score=72.79 Aligned_cols=234 Identities=15% Similarity=0.244 Sum_probs=144.4
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
-+-++|+|.| .+|+|-..-| |.+|--.. ...++.| .|. .|.-++|||... +|+|
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---------------------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT 266 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES---------------------FDRIQRF-YHP-GVQFIDFSPNEK-YLVT 266 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc---------------------HHHHHhc-cCC-CceeeecCCccc-eEEE
Confidence 3568999999 7888865554 88897655 3444555 355 578899999988 9998
Q ss_pred EeC-----------CCeEEEEecCCCCccccCCCCccc---CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 252 GDC-----------NSCIHLWEPASDATWNVDPNPFIG---HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 252 g~~-----------dg~I~lwd~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
-+. ...|+|||+.++... +.|.. ....-.-..||.+++ +||--.. .+|.||+..+.. ++
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lk----rsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~-ll 339 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLK----RSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFM-LL 339 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchh----cceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCcee-ee
Confidence 652 247999999997552 22222 112223468999998 7766554 679999887642 22
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS- 391 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s- 391 (479)
-.-.-.-..|...+|+|.+ ++||-=... ..+.+-.+.+.+ .+++-.-|.-.=..+.|..++ .+|+.--
T Consensus 340 d~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~----~iRt~nlfnVsDckLhWQk~g-dyLcvkvd 413 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKR----EIRTKNLFNVSDCKLHWQKSG-DYLCVKVD 413 (698)
T ss_pred cccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccc----eeeeccceeeeccEEEeccCC-cEEEEEEE
Confidence 1112233568889999987 777754322 245555555554 455444444333456676644 5555421
Q ss_pred ---------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 392 ---------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 392 ---------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
.=..+-|+.++.. ++|...+-.. ..|..++|-|.|..+.+-.+...
T Consensus 414 R~tK~~~~g~f~n~eIfrireK---------------------dIpve~velk---e~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREK---------------------DIPVEVVELK---ESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred eeccccccceEeeEEEEEeecc---------------------CCCceeeecc---hheeeeeeccCCCeEEEEEccccc
Confidence 1122445555543 4444444332 46999999999976665555543
Q ss_pred --ceEEeee
Q 039302 462 --FNILMPS 468 (479)
Q Consensus 462 --i~iw~~~ 468 (479)
+.+|.+.
T Consensus 470 ~tvsfY~~e 478 (698)
T KOG2314|consen 470 NTVSFYAVE 478 (698)
T ss_pred cceeEEEee
Confidence 7788776
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00016 Score=77.03 Aligned_cols=204 Identities=17% Similarity=0.312 Sum_probs=126.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
+.|.++.|..+...++ .+...|.|.+-|..+. .+.....-...|.+++|+|+.. .+
T Consensus 69 ~~i~s~~fl~d~~~i~-v~~~~G~iilvd~et~----------------------~~eivg~vd~GI~aaswS~Dee-~l 124 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSIC-VITALGDIILVDPETL----------------------ELEIVGNVDNGISAASWSPDEE-LL 124 (1265)
T ss_pred cceEEEEEecccceEE-EEecCCcEEEEccccc----------------------ceeeeeeccCceEEEeecCCCc-EE
Confidence 5688888888874444 4578899999877662 2222222345899999999998 88
Q ss_pred EEEeCCCeEEEEec----CCCCc---------------cccCCCCcccC---------------------CCcEEEEEEC
Q 039302 250 VSGDCNSCIHLWEP----ASDAT---------------WNVDPNPFIGH---------------------AASVEDLQWS 289 (479)
Q Consensus 250 ~sg~~dg~I~lwd~----~~~~~---------------~~~~~~~~~~h---------------------~~~V~~l~~s 289 (479)
+..+..+++.+-.- -.... |......|.|. .+.=+.|.|-
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR 204 (1265)
T ss_pred EEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc
Confidence 88887777766432 11000 11100111111 0112358999
Q ss_pred CCCCcEEEEEe----CC-CcEEEEEcCCCCceeeEE-ecCCCCEEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCC
Q 039302 290 PTESDVFASCS----VD-GNIAIWDTRVGKSALMSF-KAHNADVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKGG 360 (479)
Q Consensus 290 p~~~~~l~s~s----~d-g~I~iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~ 360 (479)
-+|. +||+.. .+ +.|++||-. +. +... ......=.+++|-|.| .++|+-. .|+.|.+|.......
T Consensus 205 gDg~-~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h- 278 (1265)
T KOG1920|consen 205 GDGE-YFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH- 278 (1265)
T ss_pred cCCc-EEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc-
Confidence 9998 787732 23 799999987 32 1111 1222334689999988 7777743 455788887554432
Q ss_pred CceEEEeecCCCCeEEEEEeCCCCCEEEE---EeCCCcEEEEECCCC
Q 039302 361 DSVVAHFEYHKHPVTSIEWSPHEGSTLAV---SSADNQLTIWDLSLE 404 (479)
Q Consensus 361 ~~~~~~~~~h~~~I~~v~~sp~~~~~las---~s~Dg~I~iwdl~~~ 404 (479)
+.....+.....+|..++|+.++ .+||+ ......|.+|-+.+.
T Consensus 279 g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 279 GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence 22333344445569999999955 88887 555566999998875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00047 Score=66.44 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=111.1
Q ss_pred eeEEEEecCCCcEEEEE-eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 172 VNRIRAMSQNPHICASW-ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
-..++++|+|..++++- +.+..|.+.|+.. .+.+..+.- .+...-+..+... .+
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~---------------------~kvv~ei~v-p~~~~vy~t~e~~--~~- 161 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG---------------------KAFVRMMDV-PDCYHIFPTANDT--FF- 161 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCC---------------------CcEEEEEeC-CCCcEEEEecCCc--cE-
Confidence 44678999996565543 3378999999987 344444432 1111122222211 11
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCc-ccC-----CCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCc----eeeE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPF-IGH-----AASVEDLQWSP-TESDVFASCSVDGNIAIWDTRVGKS----ALMS 319 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~-~~h-----~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~~~~~----~~~~ 319 (479)
+-+.||......+.+.+........+ .+. ..+ .|.+ ++. .+.+... |+|.+.|+..... +...
T Consensus 162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeee
Confidence 22234444443333322211111111 110 112 3455 676 4444443 9999999654321 1211
Q ss_pred Ee-------cCCCCEEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 320 FK-------AHNADVNVISWNRLASCLLASGS---------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 320 ~~-------~h~~~v~~l~~~p~~~~~l~sgs---------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
+. -......-+++++++..+++... ..+.|.++|..+.+ .+..+.. ...+..|+++|++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~v-G~~~~~iavS~Dg 310 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIEL-GHEIDSINVSQDA 310 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEeC-CCceeeEEECCCC
Confidence 11 12344556999999955555331 12589999999988 6777664 5688999999977
Q ss_pred CCEEEEEe-CCCcEEEEECCCCC
Q 039302 384 GSTLAVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 384 ~~~las~s-~Dg~I~iwdl~~~~ 405 (479)
..+|++.. .++.|.++|..+.+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCCe
Confidence 52666555 68899999998774
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-07 Score=92.25 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=119.6
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
.++..+|..|...-+|++|+-..+ .|+.|+..|.|+++++.++.. ...+.+|.++|+-+.-+.+|...|.+++..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred cccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeecccc
Confidence 456677888888999999999887 999999999999999988765 356889999999999999998555555544
Q ss_pred C-cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE-ee---cCCCCeEEE
Q 039302 303 G-NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH-FE---YHKHPVTSI 377 (479)
Q Consensus 303 g-~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~-~~---~h~~~I~~v 377 (479)
. ...+|++.....+..++.. -.++.|+... ..-+.|..-....|||+.+.. ++.+ +. +....-+.+
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~----~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCS----PLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred CchHHHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCc----HHHHhcCcchhhhhhcccc
Confidence 4 5789998875445555542 4677888765 444556665678999999987 4443 22 223334778
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.|+|.+ .++. .||. +||.+..
T Consensus 1237 ~FsP~D-~LIl---ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1237 HFSPCD-TLIL---NDGV--LWDVRIP 1257 (1516)
T ss_pred ccCCCc-ceEe---eCce--eeeeccH
Confidence 999976 5554 3553 6999886
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00016 Score=69.47 Aligned_cols=167 Identities=12% Similarity=0.082 Sum_probs=120.4
Q ss_pred CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC-eEEE
Q 039302 182 PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS-CIHL 260 (479)
Q Consensus 182 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg-~I~l 260 (479)
..++|..|. |.+.|.+... .....+ +|.+.|.-..+..+++ -++.|..|| .+-|
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~----------------------~~~iqv-~~~~~VrY~r~~~~~e-~~vigt~dgD~l~i 386 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWD----------------------GYSIQV-GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGI 386 (668)
T ss_pred CcEEEEEec-CcEEEECCCC----------------------CeeEEc-CCCCceEEEEEccCCc-ceEEeccCCceEEE
Confidence 356666554 6777776654 122222 5667788888888887 899999999 9999
Q ss_pred EecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEE
Q 039302 261 WEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLL 340 (479)
Q Consensus 261 wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 340 (479)
+|..++.. ..+...-+.|.++..+|+|+ .++.+.....|.+.|+.+++ ....-+...+-|+.+.|+|++ .+|
T Consensus 387 yd~~~~e~-----kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~ns-r~i 458 (668)
T COG4946 387 YDKDGGEV-----KRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNS-RWI 458 (668)
T ss_pred EecCCceE-----EEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCc-eeE
Confidence 99987653 33555668899999999999 88888888999999999986 333334556779999999999 899
Q ss_pred EEEeCCC----eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 341 ASGSDDG----TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 341 ~sgs~dg----~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
|-+--+| .|+++|+...+ +.......+.=.+-+|.|++ ++|
T Consensus 459 AYafP~gy~tq~Iklydm~~~K-----iy~vTT~ta~DfsPaFD~d~-ryL 503 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGK-----IYDVTTPTAYDFSPAFDPDG-RYL 503 (668)
T ss_pred EEecCcceeeeeEEEEecCCCe-----EEEecCCcccccCcccCCCC-cEE
Confidence 9887776 68999998776 22222223333455677754 443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00022 Score=73.44 Aligned_cols=198 Identities=9% Similarity=0.016 Sum_probs=130.6
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg 256 (479)
|++.+ ..+|.|+.+|.|.+.+-.- +.+..|+.+...+...-|.-++.++|++.+.|+
T Consensus 31 ~~s~~-~~vvigt~~G~V~~Ln~s~----------------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 31 CSSST-GSVVIGTADGRVVILNSSF----------------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EcCCC-ceEEEeeccccEEEecccc----------------------eeeehheecchhhhhHhhcccCceEEEEEeecC
Confidence 34444 7888999999998887553 444556666665444445555545888876665
Q ss_pred -----eEEEEecCCCCccc---c------CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc---CCCCceeeE
Q 039302 257 -----CIHLWEPASDATWN---V------DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT---RVGKSALMS 319 (479)
Q Consensus 257 -----~I~lwd~~~~~~~~---~------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~---~~~~~~~~~ 319 (479)
.|+||++....... . ....+.....++.+++.+.+-. .+|.|-.+|.|..+.- |........
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceee
Confidence 48999997642211 0 0011222456788999998866 8899999999998853 222212222
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
......+|+.+.+..++...+.++. -..|.+|.+.... .....+..|+.++.|..+++.. ..|++++ ...|.+|
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY 240 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYFY 240 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCC---cceeeeccCCccceeeecCCCC-ccEEEec-CceEEEE
Confidence 2445678999999988855344333 4579999998433 2455688899999999999854 4344443 4579999
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
+....
T Consensus 241 ~sd~~ 245 (933)
T KOG2114|consen 241 DSDGR 245 (933)
T ss_pred cCCCc
Confidence 98754
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0013 Score=61.38 Aligned_cols=233 Identities=16% Similarity=0.168 Sum_probs=139.9
Q ss_pred cceeEEEEecCCCcEEEEEeCCce-EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWADTGH-VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.....++.+|..+..+|.+-.-|+ ..+||..+..... .....+-..|.||. .|++++. +
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~-------------~~~a~~gRHFyGHg------~fs~dG~-~ 64 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ-------------RLWAPPGRHFYGHG------VFSPDGR-L 64 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee-------------EEcCCCCCEEecCE------EEcCCCC-E
Confidence 345567888877678888777776 5788887621100 00123334566664 6999998 7
Q ss_pred EEEE-----eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-----------------CCCcEE
Q 039302 249 LVSG-----DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-----------------VDGNIA 306 (479)
Q Consensus 249 l~sg-----~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-----------------~dg~I~ 306 (479)
|++. ...|.|-|||.... ... ...+..|.-.-..+.+.|+++++++.-+ .+-.|.
T Consensus 65 LytTEnd~~~g~G~IgVyd~~~~-~~r--i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 65 LYTTENDYETGRGVIGVYDAARG-YRR--IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred EEEeccccCCCcEEEEEEECcCC-cEE--EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 7775 34579999999732 211 2446666666678899999973433321 123345
Q ss_pred EEEcCCCCceeeE--E--ecCCCCEEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCCCCCceEEEe-------e
Q 039302 307 IWDTRVGKSALMS--F--KAHNADVNVISWNRLASCLLASGSDDG-------TFSIHDLRLLKGGDSVVAHF-------E 368 (479)
Q Consensus 307 iwD~~~~~~~~~~--~--~~h~~~v~~l~~~p~~~~~l~sgs~dg-------~i~iwDlr~~~~~~~~~~~~-------~ 368 (479)
+.|.+++. .+.. + .-|...|..+++++++ ..++..-..| .|-+++... .+..+ .
T Consensus 142 ~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~------~~~~~~~p~~~~~ 213 (305)
T PF07433_consen 142 YLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG------ALRLLPAPEEQWR 213 (305)
T ss_pred EEecCCCc-eeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC------cceeccCChHHHH
Confidence 55556554 2322 2 3366778888898887 4433332222 233333322 11111 1
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeC
Q 039302 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448 (479)
Q Consensus 369 ~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p 448 (479)
.-.+.|-+|++++++..+.+|+=.-+++.+||..+.. ++-.+. -..+..++-.+
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-------------------------~~~~~~-l~D~cGva~~~ 267 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-------------------------LLGSVP-LPDACGVAPTD 267 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-------------------------Eeeccc-cCceeeeeecC
Confidence 2346789999999664455666668899999998873 233222 23577777777
Q ss_pred CCCcEEEEEcCCC
Q 039302 449 QVPGMIVSTAADG 461 (479)
Q Consensus 449 ~~~~ll~s~~~dg 461 (479)
++ +++|++.+.
T Consensus 268 ~~--f~~ssG~G~ 278 (305)
T PF07433_consen 268 DG--FLVSSGQGQ 278 (305)
T ss_pred Cc--eEEeCCCcc
Confidence 65 777777773
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.6e-05 Score=77.06 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=107.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
...++|++++. ..|+-|..+|.|++++..... .....|... .-.|. +++|||.||+|.|..+-+
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~------~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP------KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc------ccccccccc------ccCCc-eEEEecCCCcEEEeeccC
Confidence 34566777764 289999999999999875421 223344443 45677 999999999999999888
Q ss_pred CCceeeEEecCCCCEEEEEEcCC----CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRL----ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
.+. ..++ ....++.+|+++|+ ....+++||.-| +.++.-+-... ...+ .+..-.++|.++.|. ++++|
T Consensus 103 ~~~-~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v-~l~~~eG~I~~i~W~---g~lIA 174 (846)
T KOG2066|consen 103 DDE-ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSV-VLSEGEGPIHSIKWR---GNLIA 174 (846)
T ss_pred Ccc-ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccce-eeecCccceEEEEec---CcEEE
Confidence 753 2222 24568999999998 246899999999 88877665443 1122 355567899999997 38888
Q ss_pred EEeCCCcEEEEECCCCC
Q 039302 389 VSSADNQLTIWDLSLEK 405 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~ 405 (479)
-++.+| |+|||+...+
T Consensus 175 Wand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQ 190 (846)
T ss_pred EecCCC-cEEEeccccc
Confidence 887666 8999998875
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-05 Score=76.32 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=83.9
Q ss_pred ceEEEEeCCCCCCeEEEE----eCCCe----EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 235 EGYAIDWNPVAPGRLVSG----DCNSC----IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg----~~dg~----I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
...++.|+...+..+.|. +.+|. -++|++...+...+ ...-....+.|.+++++|++. .|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-svtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SVTSIPLPSQVICCARSPSED-KLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence 446778887665556553 23443 35677655333221 112234677899999999999 999999999999
Q ss_pred EEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 307 IWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
+||...+. .......-..+.++|+|+| .++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~---t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGV---TLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCe---eeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 99998763 2222344567899999999 89999999999999998644
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00059 Score=63.28 Aligned_cols=185 Identities=13% Similarity=0.163 Sum_probs=117.2
Q ss_pred eeEEEEe-cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--C-CCCceEEEEeCCCCCC
Q 039302 172 VNRIRAM-SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--G-HKDEGYAIDWNPVAPG 247 (479)
Q Consensus 172 V~~v~~~-p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~l~~s~~~~~ 247 (479)
.+.+.+. +++ .++++ .. +.+.++|.... ..+.+.... . .....+.+++.++|.
T Consensus 42 ~~G~~~~~~~g-~l~v~-~~-~~~~~~d~~~g-------------------~~~~~~~~~~~~~~~~~~ND~~vd~~G~- 98 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVA-DS-GGIAVVDPDTG-------------------KVTVLADLPDGGVPFNRPNDVAVDPDGN- 98 (246)
T ss_dssp EEEEEEECTTS-EEEEE-ET-TCEEEEETTTT-------------------EEEEEEEEETTCSCTEEEEEEEE-TTS--
T ss_pred CceEEEEccCC-EEEEE-Ec-CceEEEecCCC-------------------cEEEEeeccCCCcccCCCceEEEcCCCC-
Confidence 7777777 565 66655 44 44566687662 122333332 1 234788999999987
Q ss_pred eEEEEeCC--------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee--
Q 039302 248 RLVSGDCN--------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL-- 317 (479)
Q Consensus 248 ~l~sg~~d--------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~-- 317 (479)
+.++.... |.|..++.. +.. . .....-...+.|+|+|+++.++++-+..+.|..+++......+
T Consensus 99 ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~----~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 99 LYVTDSGGGGASGIDPGSVYRIDPD-GKV-T----VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp EEEEEECCBCTTCGGSEEEEEEETT-SEE-E----EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred EEEEecCCCccccccccceEEECCC-CeE-E----EEecCcccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 66665543 456666665 222 1 1222244578999999998666778888999999997543211
Q ss_pred -eEE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe-CCCCCEEEEEe
Q 039302 318 -MSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTLAVSS 391 (479)
Q Consensus 318 -~~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~las~s 391 (479)
..+ .........+++..++ ++.++....+.|.++|.. ++ .+..+......+++++|. |+...+++|.+
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~----~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GK----LLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC----EEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred eeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-cc----EEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 112 2222247889999998 888888889999999988 55 677676655689999995 54445555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=75.62 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=140.9
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCC-CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPAS-DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIW 308 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iw 308 (479)
-|.+.|+.+.-... .++.+++.||.++.|.... .+... ...+..|.+.|.+++.+-++. +++|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEf--VKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEF--VKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceee--hhhhHHHHHHHHhhhccccce-eEeeccCcccceeEE
Confidence 37777777765543 3999999999999998754 22211 345778899999999999998 8999777 9999999
Q ss_pred EcCCCCce-eeEEecCCCCEEEEEEcCCC-CcEEE-EEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 309 DTRVGKSA-LMSFKAHNADVNVISWNRLA-SCLLA-SGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 309 D~~~~~~~-~~~~~~h~~~v~~l~~~p~~-~~~l~-sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
|+..-... ...+.--.+.+.. ..++.. -.+|+ +.-.+|.+.|+|-+.... +....-.-|..+|..+.++|.+ .
T Consensus 82 DvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~-D 157 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAG-D 157 (558)
T ss_pred EeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcC--ccceecccccCceEEEEeeccc-c
Confidence 99876421 2222222222221 112211 11343 444678999999887663 2444555699999999999965 7
Q ss_pred EEEEEeCCCcEEEEECCCC-CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 386 TLAVSSADNQLTIWDLSLE-KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
.+++....|.|..|..... +.+.. ..........-++-.-......+++.|+|.+. -+...+.|. |+
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~----------~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR 226 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRT----------NLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVR 226 (558)
T ss_pred ceeeccccceeEeecCCCcccCccc----------cccccccccchhhcccccccCccceEEccccC-cccccCcccEEE
Confidence 8888888899999998741 11100 00000011111222222234588999999985 566666776 77
Q ss_pred EEeeecc
Q 039302 464 ILMPSNI 470 (479)
Q Consensus 464 iw~~~~~ 470 (479)
++.+...
T Consensus 227 ~F~~KtG 233 (558)
T KOG0882|consen 227 GFVFKTG 233 (558)
T ss_pred EEEeccc
Confidence 7766543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.5e-05 Score=74.97 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=62.6
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
.....+.+++++|+.. .|+.|+.||+|.+||...+-. .+....-.++.++|+|+|. +|++|+..|.|.+||+
T Consensus 257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t------~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVT------LLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCee------eeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEe
Confidence 3567899999999998 999999999999999876422 1223345678999999999 9999999999999998
Q ss_pred CCC
Q 039302 311 RVG 313 (479)
Q Consensus 311 ~~~ 313 (479)
--.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0013 Score=70.33 Aligned_cols=155 Identities=17% Similarity=0.337 Sum_probs=97.5
Q ss_pred EEEEeCCCCCCeEEE-----EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe---CCCcEEEE
Q 039302 237 YAIDWNPVAPGRLVS-----GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS---VDGNIAIW 308 (479)
Q Consensus 237 ~~l~~s~~~~~~l~s-----g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~dg~I~iw 308 (479)
..+.|--+|. ++|+ ...-..|++||-. +.. .....+ ..+-=.+++|-|.|. ++++-. .|+.|.+|
T Consensus 199 ~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~---~~~l~~~LsWkPsgs-~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 199 TSISWRGDGE-YFAVSFVESETGTRKIRVYDRE-GAL-NSTSEP---VEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ceEEEccCCc-EEEEEEEeccCCceeEEEeccc-chh-hcccCc---ccccccceeecCCCC-eEeeeeecCCCCcEEEE
Confidence 3589999987 7777 2323799999976 222 110111 122335789999888 777753 45678888
Q ss_pred EcCCCCc--eeeEEecCCCCEEEEEEcCCCCcEEEE---EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 309 DTRVGKS--ALMSFKAHNADVNVISWNRLASCLLAS---GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 309 D~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~s---gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
.-+.... -...+......|..++|+.++ .+||+ ......|++|-+.+.. +..-..+....... +.|+|..
T Consensus 272 ErNGL~hg~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Nyh--WYLKq~l~~~~~~~--~~W~p~~ 346 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYH--WYLKQELQFSQKAL--LMWDPVT 346 (1265)
T ss_pred ecCCccccccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeE--EEEEEEEecccccc--ccccCCC
Confidence 6544321 112223334458999999998 78887 5555569999988766 22233333333333 8888866
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 039302 384 GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~ 403 (479)
...|..-..+|.+.++++.-
T Consensus 347 ~~~L~v~~~sG~~~v~~~~~ 366 (1265)
T KOG1920|consen 347 EKTLHVLRESGQRLVRDFAW 366 (1265)
T ss_pred ceeEEEEecCCcEEEEEEEE
Confidence 66676666778777766643
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00031 Score=74.02 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=87.8
Q ss_pred eCCCeEEEEecCCCCccccCCCCcccCC-CcEEEEEECC-----CCCcEEEEEeCCCcEEEEEcCCCCceeeEE----ec
Q 039302 253 DCNSCIHLWEPASDATWNVDPNPFIGHA-ASVEDLQWSP-----TESDVFASCSVDGNIAIWDTRVGKSALMSF----KA 322 (479)
Q Consensus 253 ~~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~l~~sp-----~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~----~~ 322 (479)
.....|+-.|+..++.. ..+..|. .+|.+++-.. +.. .-+.|-.+..|..||.|.....+..- ..
T Consensus 501 ~~~~~ly~mDLe~GKVV----~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVV----EEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred CCCCceEEEecCCCcEE----EEeecCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 34567788888776541 2233333 2355543221 112 34556668889999999764222211 23
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.....+|++-..+| +||+|+.+|.||+||- .+.. .-..+.+-..||..|..+.++ .+|++.| +..|.+++..
T Consensus 576 ~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~---AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 576 SKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKR---AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDTL 647 (794)
T ss_pred cCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchh---hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEEe
Confidence 45567888888777 8999999999999994 3332 445567778999999999976 5554444 5567777764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00022 Score=73.12 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=60.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+++++|+|.. .+||.|-.-|.+.+|..+. .+.......|..+|..+.||++|. .|+
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~---------------------~e~htv~~th~a~i~~l~wS~~G~-~l~ 117 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNT---------------------TETHTVVETHPAPIQGLDWSHDGT-VLM 117 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCC---------------------ceeeeeccCCCCCceeEEecCCCC-eEE
Confidence 45669999987 8899999999999999877 333334457899999999999998 999
Q ss_pred EEeCCCeEEEEecC
Q 039302 251 SGDCNSCIHLWEPA 264 (479)
Q Consensus 251 sg~~dg~I~lwd~~ 264 (479)
|+..=|.+.+|...
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99999999999875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00024 Score=72.85 Aligned_cols=256 Identities=13% Similarity=0.126 Sum_probs=142.9
Q ss_pred EEEecCCCcEEEEEeC----CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 175 IRAMSQNPHICASWAD----TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 175 v~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
..|+|..| ++|.++. .|.|.||--... .+.-.+..- .+.+++|+|..- .|+
T Consensus 21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtGE--------------------Pqr~Vt~P~---hatSLCWHpe~~-vLa 75 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVASFSPERGGSVTIFADTGE--------------------PQRDVTYPV---HATSLCWHPEEF-VLA 75 (1416)
T ss_pred cccCCCCc-eeEEEEecCCCCceEEEEecCCC--------------------CCcccccce---ehhhhccChHHH-HHh
Confidence 47888774 6666553 588888854431 111112222 345699999886 899
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEecCC--CCE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKAHN--ADV 327 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h~--~~v 327 (479)
+|-.-|.+.+|..++.... .....|+.+|..+.||++|. .++++..-|.|.+|....... ....+..|. ..+
T Consensus 76 ~gwe~g~~~v~~~~~~e~h----tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETH----TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceee----eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 9999999999998775442 23456899999999999999 999999999999997652210 000000010 001
Q ss_pred E--------------------------EEE----E-------------cCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE
Q 039302 328 N--------------------------VIS----W-------------NRLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 328 ~--------------------------~l~----~-------------~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~ 364 (479)
+ .+. | .|.| ..++.++.+|+|+-.|-.... .
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq~g~~-----~ 224 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQNGRQ-----R 224 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcCCCcE-----E
Confidence 1 111 1 1233 566666777777666543221 2
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhh--hccccc---C---CCCCCCCceEEeec
Q 039302 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKA--KTREQV---N---APEDLPPQLLFIHQ 436 (479)
Q Consensus 365 ~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~--~~~~~~---~---~~~~~p~~l~~~h~ 436 (479)
...+. +.-..+-|.+.. ..++..-.+-++.++-.......++....+. +..... . ...-+.+...+...
T Consensus 225 ~V~k~--dS~vQmLf~~~~-eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e 301 (1416)
T KOG3617|consen 225 TVHKL--DSEVQMLFMGYC-EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLE 301 (1416)
T ss_pred EEEEc--cchHHHHHhccc-ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhh
Confidence 22221 111334566643 4444455566666655544443333322222 111110 0 01112222233333
Q ss_pred CCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 437 GQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 437 g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
....+++++++..+..+.+.+..+++.+|+-.+
T Consensus 302 ~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~ 334 (1416)
T KOG3617|consen 302 LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVN 334 (1416)
T ss_pred cCCceEEEEEeccceEEEecccCCcEEEeeecC
Confidence 335699999999886555555555589997544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00089 Score=69.12 Aligned_cols=198 Identities=13% Similarity=0.150 Sum_probs=121.4
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCC
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-----NIAIWDTRVGK 314 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-----~I~iwD~~~~~ 314 (479)
.|++.+. .++.|+.+|.|.+.+-.- .. ...+..+...+...-|.-++.++|++.+.|+ .|+|||+....
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~--~~---~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF--QL---IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc--ee---eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 3566554 999999999998887432 11 1446666666333334445545777777665 49999987541
Q ss_pred -----cee--eEEec-----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 315 -----SAL--MSFKA-----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 315 -----~~~--~~~~~-----h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.++ ..+.. ...++.+++.+.+- ..+|.|-.+|.|..+.-.-.+.......-...-..+||.+.+.-+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 12222 24578889999887 899999999999988643222111122222234679999999876
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
+...+.++ .-..|.+|.+.... | .+ ..+..+ .++.+..+++..+ -++.++...
T Consensus 183 ~~s~lFv~-Tt~~V~~y~l~gr~----------------------p-~~-~~ld~~G~~lnCss~~~~t~-qfIca~~e~ 236 (933)
T KOG2114|consen 183 GKSVLFVA-TTEQVMLYSLSGRT----------------------P-SL-KVLDNNGISLNCSSFSDGTY-QFICAGSEF 236 (933)
T ss_pred CceeEEEE-ecceeEEEEecCCC----------------------c-ce-eeeccCCccceeeecCCCCc-cEEEecCce
Confidence 54433333 35679999998331 1 11 212222 4688888887664 345555566
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
+.+|+....
T Consensus 237 l~fY~sd~~ 245 (933)
T KOG2114|consen 237 LYFYDSDGR 245 (933)
T ss_pred EEEEcCCCc
Confidence 777776544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0017 Score=60.66 Aligned_cols=186 Identities=14% Similarity=0.126 Sum_probs=113.4
Q ss_pred EEEecCCCcEEEEE----eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 175 IRAMSQNPHICASW----ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 175 v~~~p~~~~~lat~----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
..|+++|..+++|= +..|.|-|||... ..+.+..|..|.-.-..|.|.|+++ .|+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--------------------~~~ri~E~~s~GIGPHel~l~pDG~-tLv 114 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR--------------------GYRRIGEFPSHGIGPHELLLMPDGE-TLV 114 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC--------------------CcEEEeEecCCCcChhhEEEcCCCC-EEE
Confidence 37999996666652 3458999999985 2455667777776667788999987 666
Q ss_pred EEe------------------CCCeEEEEecCCCCccccCCCCc--ccCCCcEEEEEECCCCCcEEEEEeCCCc------
Q 039302 251 SGD------------------CNSCIHLWEPASDATWNVDPNPF--IGHAASVEDLQWSPTESDVFASCSVDGN------ 304 (479)
Q Consensus 251 sg~------------------~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~------ 304 (479)
.+. .+.++.+-|..++.... ...+ .-|.-+|..+++.++|. +++.+-..|.
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~--q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE--QVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPP 191 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCceee--eeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCC
Confidence 552 11223333333333211 1223 44777899999999987 4444433222
Q ss_pred -EEEEEcCCCCceeeEE-------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 305 -IAIWDTRVGKSALMSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 305 -I~iwD~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
|-+++-... +..+ ..-...+-+|++++++..+.+|+-.-|.+.+||..++. .+.... -..+..
T Consensus 192 Lva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~----~~~~~~--l~D~cG 262 (305)
T PF07433_consen 192 LVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR----LLGSVP--LPDACG 262 (305)
T ss_pred eEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC----Eeeccc--cCceee
Confidence 333332221 1111 23456799999999985566777778899999999987 454443 234556
Q ss_pred EEEeCCCCCEEEEEeCCCcE
Q 039302 377 IEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I 396 (479)
++-.+. .+++|++ .|.+
T Consensus 263 va~~~~--~f~~ssG-~G~~ 279 (305)
T PF07433_consen 263 VAPTDD--GFLVSSG-QGQL 279 (305)
T ss_pred eeecCC--ceEEeCC-CccE
Confidence 666552 3555554 4543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.011 Score=54.29 Aligned_cols=205 Identities=13% Similarity=0.115 Sum_probs=115.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s 242 (479)
.+.+-...+..|.|.|+...++|+....+.|..++.+. +.+.++.-. -+..-+|++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----------------------~vlr~i~l~g~~D~EgI~y~ 73 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----------------------KVLRRIPLDGFGDYEGITYL 73 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------EEEEEE-SS-SSEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----------------------CEEEEEeCCCCCCceeEEEE
Confidence 34455677999999998878999989999988877653 333333222 2356788887
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCcc--c-----cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--C
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATW--N-----VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--G 313 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~--~-----~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~--~ 313 (479)
.++. ++++--.++.+.++++...... . ........++..+..|+|+|.+. .|+.+-...-..||.++. .
T Consensus 74 g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 74 GNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-
T ss_pred CCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccC
Confidence 6654 5555446899999998443221 0 01111223566799999999988 444556666777777764 2
Q ss_pred CceeeE--E------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC---------CCeEE
Q 039302 314 KSALMS--F------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK---------HPVTS 376 (479)
Q Consensus 314 ~~~~~~--~------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~---------~~I~~ 376 (479)
...+.. . ......+.+++++|..+.+++....+..|.++| +.++ ++..+.-.. ..--.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~----~~~~~~L~~g~~gl~~~~~QpEG 226 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR----VVSSLSLDRGFHGLSKDIPQPEG 226 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT------EEEEEE-STTGGG-SS---SEEE
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC----EEEEEEeCCcccCcccccCCccE
Confidence 111111 1 123456899999999888999999999999999 5555 444443222 24578
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iw 399 (479)
|+|.+++ + |...|+-+..+++
T Consensus 227 Ia~d~~G-~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 227 IAFDPDG-N-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEE-TT----EEEEETTTEEEEE
T ss_pred EEECCCC-C-EEEEcCCceEEEe
Confidence 9999854 4 4444566666654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00031 Score=70.86 Aligned_cols=142 Identities=12% Similarity=0.148 Sum_probs=95.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|.--++...+ .+++.|++.|.|++|+-.... -......+-.+.+..+..++... ++
T Consensus 34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~--------------------~~~~~~~~~~~~~~~~~vs~~e~-lv 91 (726)
T KOG3621|consen 34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGE--------------------MRKLKNEGATGITCVRSVSSVEY-LV 91 (726)
T ss_pred ceEEEEEeecCC-ceEEEecccceEEEEecCchh--------------------hhcccccCccceEEEEEecchhH-hh
Confidence 334434444444 788999999999999987621 11222333344666777888887 89
Q ss_pred EEEeCCCeEEEEecCCCCccccC--CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---ceeeEEecCC
Q 039302 250 VSGDCNSCIHLWEPASDATWNVD--PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK---SALMSFKAHN 324 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~---~~~~~~~~h~ 324 (479)
|.|+..|.|.++.++........ ...-..|...|++++|++++. .|.+|...|+|.+-.+.... ...+.+..-.
T Consensus 92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999998774331110 111234788999999999999 89999999999988877621 1233333445
Q ss_pred CCEEEEEEcC
Q 039302 325 ADVNVISWNR 334 (479)
Q Consensus 325 ~~v~~l~~~p 334 (479)
+.|-.+....
T Consensus 171 s~IVQlD~~q 180 (726)
T KOG3621|consen 171 SEIVQLDYLQ 180 (726)
T ss_pred cceEEeeccc
Confidence 6676666653
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00036 Score=70.45 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=102.9
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+.--++..... +|+.|+.-|.+++|+-..+.... .+..+-.+.+..+..++.+. ++|.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~---~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRK---LKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCchhhhc---ccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 344444555565 99999999999999976654422 33334456667777888887 89999999999999887753
Q ss_pred ceeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 315 SALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.+-..+ ..|...|++++|++++ ..+.+|...|.|..-.+............+-.-.+.|..+.... +.+|++
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVS 186 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVS 186 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHh
Confidence 322222 3478899999999999 89999999999998887762111113334444467887777763 244444
Q ss_pred Ee
Q 039302 390 SS 391 (479)
Q Consensus 390 ~s 391 (479)
..
T Consensus 187 tl 188 (726)
T KOG3621|consen 187 TL 188 (726)
T ss_pred hh
Confidence 43
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.011 Score=58.31 Aligned_cols=267 Identities=11% Similarity=0.054 Sum_probs=134.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccc-c--cccccc----------CCCC--------Cc-cccCCCcEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNAL-A--ESETVA----------GHGA--------PQ-VLNQSPLVK 228 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~-~--~~~~~~----------~~~~--------~~-~~~~~~~~~ 228 (479)
.|+.+.|.+.. .-||.|...|.|-||.+....... . ...... .... .. .....|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 566777999999999886643322 0 000000 0000 00 011345555
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-CCC---CcccCCCcEEEEEECC---CC----CcEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-DPN---PFIGHAASVEDLQWSP---TE----SDVFA 297 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~---~~~~h~~~V~~l~~sp---~~----~~~l~ 297 (479)
+....++|++++.|.-| ++|.|..+|.+.|.|++....... ... .-......|+++.|.- .+ .-.++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66668899999998554 999999999999999965432110 000 1112345688888852 11 12688
Q ss_pred EEeCCCcEEEEEcCC-CCc-----eeeEEecCCCCEEEEE-EcCCC--------------------CcEEEEEeCCCeEE
Q 039302 298 SCSVDGNIAIWDTRV-GKS-----ALMSFKAHNADVNVIS-WNRLA--------------------SCLLASGSDDGTFS 350 (479)
Q Consensus 298 s~s~dg~I~iwD~~~-~~~-----~~~~~~~h~~~v~~l~-~~p~~--------------------~~~l~sgs~dg~i~ 350 (479)
+|...|.+.+|.+.- ... .......+.+.|..|. ++.+. +.+++++ .+..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceE
Confidence 889999999998852 111 1111124556655554 43221 1244444 467899
Q ss_pred EEeCCCCCCCCceEEEeecCCCCeEEEEEeC----CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP----HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp----~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
++.+-+.+ ..............+.+-+ ..+..|++-..+|.|+++.+...+.
T Consensus 239 v~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-------------------- 294 (395)
T PF08596_consen 239 VFKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-------------------- 294 (395)
T ss_dssp EE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E--------------------
T ss_pred EEeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH--------------------
Confidence 99988776 3333222222333444521 2457888899999999999987752
Q ss_pred CCCceEEeecCC----CCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 427 LPPQLLFIHQGQ----KDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 427 ~p~~l~~~h~g~----~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+....-.. ..+....+.++|. +++-.+...+.++.++.-
T Consensus 295 ----i~~~~l~~~~d~~~~~~ssis~~Gd-i~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 295 ----IKSVSLPPPLDSRRLSSSSISRNGD-IFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp ----EEEEE-SS---HHHHTT-EE-TTS--EEEE-SSSEEEEEEEES-
T ss_pred ----hhcccCCCccccccccccEECCCCC-EEEEeCcccEEEEEEEcc
Confidence 11111100 1366777888886 665566555555555443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.018 Score=57.14 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=83.6
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC--CcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA--ASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~--~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++.+..+|.+..+|+.++.. |........+.. ..+..+.-+| .+. .+.+++.+|.+..||..+++ .+....
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~vy~~~~~g~l~a~d~~tG~-~~W~~~- 268 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QVYAVSYQGRVAALDLRSGR-VLWKRD- 268 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EEEEEEcCCEEEEEECCCCc-EEEeec-
Confidence 678888889999999877643 221100000000 0000110011 133 67777889999999999885 333322
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.. ....... .+ ..++.++.+|.|..+|..+++ .+...... .....+.... + ..|++++.+|.|+++|.
T Consensus 269 ~~-~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 269 AS-SYQGPAV--DD-NRLYVTDADGVVVALDRRSGS----ELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred cC-CccCceE--eC-CEEEEECCCCeEEEEECCCCc----EEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEEC
Confidence 11 1122222 23 567777889999999998887 44443221 1122222222 3 68888999999999998
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
.+++
T Consensus 338 ~tG~ 341 (377)
T TIGR03300 338 EDGS 341 (377)
T ss_pred CCCC
Confidence 8763
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.005 Score=61.46 Aligned_cols=189 Identities=12% Similarity=0.128 Sum_probs=104.3
Q ss_pred CcceeEEEEecCCCcEEEEEeC--C-ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWAD--T-GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~--d-g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
...+..-+|+|++..+....-. . ..+.++++... ....+..+.++. ..-+|+|++
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g-------------------~~~~i~~~~g~~---~~P~fspDG 249 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG-------------------KRPVILNFNGNN---GAPAFSPDG 249 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCC-------------------ccceeeccCCcc---CCccCCCCC
Confidence 4556667888888554333211 1 35888888873 122333344444 467899999
Q ss_pred CCeEEEEeCCCeE--EEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 246 PGRLVSGDCNSCI--HLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 246 ~~~l~sg~~dg~I--~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
...+++...||.. .+.|+....... .....+. -..=.|+|+|+.++.+.+..|.-.||-..........+...
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~--Lt~~~gi---~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR--LTNGFGI---NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee--cccCCcc---ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 8666677777755 455665543211 1222222 22557999999777777777765555443332222333333
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGT--FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
...-..-.|+|++..++..+..+|. |.+.|+.+.. .+..+. +......-.|.|++..++.+
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~----~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG----KIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC----cEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 3322377899999544444434455 6666665554 233332 34444556777765333333
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.031 Score=54.82 Aligned_cols=153 Identities=13% Similarity=0.159 Sum_probs=84.6
Q ss_pred CCcEEEEEECCCCCcEEEE--EeCCC---cEEEEEcCCCCceeeEEecCCCCE---EEEEEc-CCCCcEEEEEeCCCeEE
Q 039302 280 AASVEDLQWSPTESDVFAS--CSVDG---NIAIWDTRVGKSALMSFKAHNADV---NVISWN-RLASCLLASGSDDGTFS 350 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s--~s~dg---~I~iwD~~~~~~~~~~~~~h~~~v---~~l~~~-p~~~~~l~sgs~dg~i~ 350 (479)
...+..+.|.+++. .|+. .+.+. .+.++|..++...+.........| ....|. +++..+|.....+|.-+
T Consensus 183 ~~yl~~v~W~~d~~-~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 183 DYYLTRVGWSPDGK-RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SEEEEEEEEEETTE-EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred ccCcccceecCCCc-EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 44578899998887 3333 33322 367778877653322223233332 244554 66667777777888655
Q ss_pred EEeCCCCCCCCceEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCC--cEEEEECCCC-CChHHHHHHhhhcccccCCCCC
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKHPVTS-IEWSPHEGSTLAVSSADN--QLTIWDLSLE-KDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg--~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
||-+..... ....+....-.|+. +.|++.+..++.++..++ .-.+|-+... ..
T Consensus 262 ly~~~~~~~---~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-------------------- 318 (353)
T PF00930_consen 262 LYLYDLDGG---KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-------------------- 318 (353)
T ss_dssp EEEEETTSS---EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--------------------
T ss_pred EEEEccccc---ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--------------------
Confidence 554444332 34455555556755 678887767777777633 4444444333 10
Q ss_pred CCCceEEeecCCCCe-eeEEEeCCCCcEEEEEcCC
Q 039302 427 LPPQLLFIHQGQKDL-KELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V-~~v~w~p~~~~ll~s~~~d 460 (479)
.+... ...... ..+.|+|++.+++..++.-
T Consensus 319 ---~~~~L-T~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 319 ---EPKCL-TCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp ---EEEES-STTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ---CeEec-cCCCCCceEEEECCCCCEEEEEEcCC
Confidence 11111 111223 5899999999888887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0032 Score=62.81 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=95.5
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEE---eCC-CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSG---DCN-SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg---~~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
.+..-...+..-+|+|++.. ++-. ... ..+.++++.++..... ..+.++. ..-+|+|+|+.++++...||
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~-~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~---~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKK-LAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNN---GAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred EecccCcceeccccCcCCCc-eEEEEEecCCCceEEEEeccCCcccee--eccCCcc---CCccCCCCCCEEEEEECCCC
Confidence 33334456777889999874 3322 222 4699999988765432 2243433 45689999997777777788
Q ss_pred cEEE--EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEE--EEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 NIAI--WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFS--IHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 ~I~i--wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~--iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
...| .|+.... +..+....+.-..=.|+|+|..++.+.+..|.-. ++++.... ...+......-..-.|
T Consensus 261 ~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-----~~riT~~~~~~~~p~~ 333 (425)
T COG0823 261 SPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-----VTRLTFSGGGNSNPVW 333 (425)
T ss_pred CccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----eeEeeccCCCCcCccC
Confidence 7555 5666554 3333322232336689999966666766667544 44554443 2333333333337789
Q ss_pred eCCCCCEEEEEeC-CCc--EEEEECCCC
Q 039302 380 SPHEGSTLAVSSA-DNQ--LTIWDLSLE 404 (479)
Q Consensus 380 sp~~~~~las~s~-Dg~--I~iwdl~~~ 404 (479)
+|++ .+|+..+. +|. |.+.|+...
T Consensus 334 SpdG-~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 334 SPDG-DKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCC-CEEEEEeccCCceeeEEeccCCC
Confidence 9977 55555443 455 555555444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0067 Score=55.68 Aligned_cols=182 Identities=16% Similarity=0.105 Sum_probs=102.6
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
.+.+++.++.|+.||..+ ++.+..+.... .+.... ...+ +.++.++.++.|+.+|.
T Consensus 38 ~v~~~~~~~~l~~~d~~t---------------------G~~~W~~~~~~-~~~~~~-~~~~-~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKT---------------------GKVLWRFDLPG-PISGAP-VVDG-GRVYVGTSDGSLYALDA 93 (238)
T ss_dssp EEEEEETTSEEEEEETTT---------------------SEEEEEEECSS-CGGSGE-EEET-TEEEEEETTSEEEEEET
T ss_pred EEEEEcCCCEEEEEECCC---------------------CCEEEEeeccc-ccccee-eecc-cccccccceeeeEeccc
Confidence 344558999999999876 44444444311 111111 1122 26777778889999998
Q ss_pred CCCCcccc-CCCCcccCC-CcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC----------E-EEE
Q 039302 264 ASDATWNV-DPNPFIGHA-ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD----------V-NVI 330 (479)
Q Consensus 264 ~~~~~~~~-~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~----------v-~~l 330 (479)
.++..... ......... .......+. +. .++.+..++.|..+|.++++ .+......... + ..+
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVD--GD-RLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEE--TT-EEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS--EEEETTEEEEE
T ss_pred CCcceeeeeccccccccccccccCceEe--cC-EEEEEeccCcEEEEecCCCc-EEEEeecCCCCCCcceeeecccccce
Confidence 77655221 111111111 111122222 55 78888889999999999986 44444433311 1 222
Q ss_pred EEcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 331 SWNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+. ++ .+..++.++. +.+ |+.+++ .+.... ...+..+ ..+.+ ..|+.++.++.|.+||+++++
T Consensus 170 ~~~-~~--~v~~~~~~g~~~~~-d~~tg~----~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 170 VIS-DG--RVYVSSGDGRVVAV-DLATGE----KLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECC-TT--EEEEECCTSSEEEE-ETTTTE----EEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTE
T ss_pred EEE-CC--EEEEEcCCCeEEEE-ECCCCC----EEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCC
Confidence 223 33 5556666674 555 999887 343332 2223332 23434 667766699999999999874
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.028 Score=55.19 Aligned_cols=204 Identities=14% Similarity=0.169 Sum_probs=110.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-------C---------CCcEEEEEECCCCCcEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-------H---------AASVEDLQWSPTESDVF 296 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-------h---------~~~V~~l~~sp~~~~~l 296 (479)
...+....|||++. .++-.. ++.|.+++..++....+ +..+ - -+.-..+-|||+++ .|
T Consensus 42 ~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~l---T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~l 115 (353)
T PF00930_consen 42 PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQL---TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YL 115 (353)
T ss_dssp ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEES---ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EE
T ss_pred ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEe---ccccceeEEcCccceeccccccccccceEECCCCC-EE
Confidence 55788999999987 777766 68999998866532111 1111 0 11224678999998 55
Q ss_pred EEEe-CCCcE-----------------------------------EEEEcCCCCceeeEE----ecCCCCEEEEEEcCCC
Q 039302 297 ASCS-VDGNI-----------------------------------AIWDTRVGKSALMSF----KAHNADVNVISWNRLA 336 (479)
Q Consensus 297 ~s~s-~dg~I-----------------------------------~iwD~~~~~~~~~~~----~~h~~~v~~l~~~p~~ 336 (479)
|... .+..| .|+|+.+++...... ..-...+..+.|.+++
T Consensus 116 a~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~ 195 (353)
T PF00930_consen 116 AFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG 195 (353)
T ss_dssp EEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT
T ss_pred EEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC
Confidence 5442 22222 333443332111111 1223457788998888
Q ss_pred CcEEEE-EeCCC---eEEEEeCCCCCCCCceEEEeecCCCCe---EEEEEe-CCCCCEEEEEeCCCcEEEEECCCCCChH
Q 039302 337 SCLLAS-GSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPV---TSIEWS-PHEGSTLAVSSADNQLTIWDLSLEKDEE 408 (479)
Q Consensus 337 ~~~l~s-gs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I---~~v~~s-p~~~~~las~s~Dg~I~iwdl~~~~~~~ 408 (479)
..+++. -..+. .+.++|..++.. .+.........| ..+.|. +++..+|.....||.-+||-+.....
T Consensus 196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~---~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~-- 270 (353)
T PF00930_consen 196 KRLWVQWLNRDQNRLDLVLCDASTGET---RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG-- 270 (353)
T ss_dssp EEEEEEEEETTSTEEEEEEEEECTTTC---EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--
T ss_pred cEEEEEEcccCCCEEEEEEEECCCCce---eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc--
Confidence 313333 33332 467778877653 222223334443 355555 66667777777888766666655431
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeee-EEEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE-LHWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~-v~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
.....-.|.-.|.+ +.|++.+..+..++..++ -.+|++.
T Consensus 271 ---------------------~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 271 ---------------------KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp ---------------------EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred ---------------------ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 12344445456755 788888876766666533 5666653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.019 Score=52.67 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=82.1
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE-EecCC-
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-FKAHN- 324 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-~~~h~- 324 (479)
.+++++.++.|+.||..++.. |... +.+..... ... .+. .++.++.++.|..+|..+++ .+.. .....
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~---~~~~~~~~---~~~-~~~-~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~ 108 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFD---LPGPISGA---PVV-DGG-RVYVGTSDGSLYALDAKTGK-VLWSIYLTSSP 108 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEE---CSSCGGSG---EEE-ETT-EEEEEETTSEEEEEETTTSC-EEEEEEE-SSC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEee---ccccccce---eee-ccc-ccccccceeeeEecccCCcc-eeeeecccccc
Confidence 788888999999999987654 2221 11110111 111 233 56666788899999999986 3433 22221
Q ss_pred --CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe-----------EEEEEeCCCCCEEEEEe
Q 039302 325 --ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV-----------TSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 325 --~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I-----------~~v~~sp~~~~~las~s 391 (479)
.....+.....+ ..++.+..++.|..+|+++++ .+.......... ..+.+. ++ .+..++
T Consensus 109 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~ 180 (238)
T PF13360_consen 109 PAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK----LLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSS 180 (238)
T ss_dssp TCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE----EEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEEC
T ss_pred ccccccccCceEec-CEEEEEeccCcEEEEecCCCc----EEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEc
Confidence 111122222224 677888889999999999998 666666543221 222222 33 666677
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
.++.+..+|+.++
T Consensus 181 ~~g~~~~~d~~tg 193 (238)
T PF13360_consen 181 GDGRVVAVDLATG 193 (238)
T ss_dssp CTSSEEEEETTTT
T ss_pred CCCeEEEEECCCC
Confidence 7775443498887
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.014 Score=57.97 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=84.5
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec-CCC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-HNA 325 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~-h~~ 325 (479)
.++.++.+|.++.||+.++.. |.. ..... ..... .+. .++.++.+|.|..+|..+++ .+..... ...
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~---~~~~~----~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~-~~W~~~~~~~~ 311 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKR---DASSY----QGPAV--DDN-RLYVTDADGVVVALDRRSGS-ELWKNDELKYR 311 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEee---ccCCc----cCceE--eCC-EEEEECCCCeEEEEECCCCc-EEEccccccCC
Confidence 788888899999999987644 221 11111 11122 244 67777889999999998885 3333311 111
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE-EEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT-SIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~-~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
...+... .+ ..|++++.+|.|+++|.++++ .+..+..+...+. +..+. + ..|+.++.||.|+.+
T Consensus 312 ~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~----~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 312 QLTAPAV--VG-GYLVVGDFEGYLHWLSREDGS----FVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCEE--EC-CEEEEEeCCCEEEEEECCCCC----EEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 1222222 23 578889999999999999887 7777776665433 33333 3 458888899998865
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0035 Score=62.73 Aligned_cols=193 Identities=17% Similarity=0.210 Sum_probs=101.5
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
.+....-....|.++|++. .++.++ +|...|+...... ....+.-.+.+|.+.+ .+|+-...++|.|
T Consensus 27 ~lg~~~~~p~~ls~npngr-~v~V~g-~geY~iyt~~~~r---------~k~~G~g~~~vw~~~n--~yAv~~~~~~I~I 93 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGR-FVLVCG-DGEYEIYTALAWR---------NKAFGSGLSFVWSSRN--RYAVLESSSTIKI 93 (443)
T ss_dssp EEEE-SS--SEEEE-TTSS-EEEEEE-TTEEEEEETTTTE---------EEEEEE-SEEEE-TSS--EEEEE-TTS-EEE
T ss_pred cCCCCCcCCeeEEECCCCC-EEEEEc-CCEEEEEEccCCc---------ccccCceeEEEEecCc--cEEEEECCCeEEE
Confidence 3333444678999999997 666655 7888888732211 1123456678999844 5888888999999
Q ss_pred EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 308 WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 308 wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+.--... ....+... ..+..|-. | .+|+..+.+ .|.+||..+.+ .+..+... +|..|.|++++ .++
T Consensus 94 ~kn~~~~-~~k~i~~~-~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~----~i~~i~v~--~vk~V~Ws~~g-~~v 159 (443)
T PF04053_consen 94 YKNFKNE-VVKSIKLP-FSVEKIFG---G-NLLGVKSSD-FICFYDWETGK----LIRRIDVS--AVKYVIWSDDG-ELV 159 (443)
T ss_dssp EETTEE--TT-----S-S-EEEEE----S-SSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTS-SEE
T ss_pred EEcCccc-cceEEcCC-cccceEEc---C-cEEEEECCC-CEEEEEhhHcc----eeeEEecC--CCcEEEEECCC-CEE
Confidence 7322221 21222211 22444333 5 666666554 89999999988 78888743 48999999965 777
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceE
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNI 464 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~i 464 (479)
|..+. ..+.|++.....-. . .........+-..|.-...|.+..|.-+ -++.++.. .++-
T Consensus 160 al~t~-~~i~il~~~~~~~~----~---------~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 160 ALVTK-DSIYILKYNLEAVA----A---------IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHH----H---------BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred EEEeC-CeEEEEEecchhcc----c---------ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 77774 47888876544100 0 1111222244455553467999999876 45555555 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.11 Score=51.97 Aligned_cols=166 Identities=9% Similarity=0.058 Sum_probs=81.6
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC--CCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD--PNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
+++.++.-..+.+.++.|+.+. .|+.-..||.++++|+......... .....-....+..+.+..+| ++.-..
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~ 145 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTG 145 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC---EEEECC
Confidence 4444443334799999998854 6777778999999998532200000 00001111122222333233 222233
Q ss_pred CCcEEEEEcCCCCceeeEE----------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC
Q 039302 302 DGNIAIWDTRVGKSALMSF----------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK 371 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~ 371 (479)
++.+.+..--........+ ..+........+..+. ...+....++.+.+.+-.... . +. ..
T Consensus 146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~----~---i~-~~ 216 (410)
T PF04841_consen 146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFK----Q---ID-SD 216 (410)
T ss_pred CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccccc----c---cc-CC
Confidence 4444333221111000111 0011110012233333 334444455555544433221 1 21 24
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+++..|+.||++ .++|.-..+|.+.|......
T Consensus 217 ~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 217 GPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CCeEEEEECCCC-CEEEEEECCCCEEEEECccc
Confidence 689999999965 88999999999998876554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0094 Score=57.67 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=91.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~ 240 (479)
.......++|++++-. .+ .++++. .+.|.+|++... +.+.....+.. .+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~---------------------~~l~~~~~~~~~~~i~sl~ 136 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNS---------------------KTLLKKAFYDSPFYITSLS 136 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETT---------------------SSEEEEEEE-BSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCc---------------------ccchhhheecceEEEEEEe
Confidence 3455668999999988 34 455543 478999999872 21222222222 455555
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC------
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG------ 313 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~------ 313 (479)
.. ++ +++.|+.-..|.++..+.... ... .........++++.|-+++. .++.+..+|.|.++.....
T Consensus 137 ~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~--va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 137 VF--KN-YILVGDAMKSVSLLRYDEENNKLIL--VARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp EE--TT-EEEEEESSSSEEEEEEETTTE-EEE--EEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred cc--cc-EEEEEEcccCEEEEEEEccCCEEEE--EEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCccccc
Confidence 44 44 999999999999886654222 111 11112345688999987775 8999999999999987632
Q ss_pred Cc-eee--EEecCCCCEEEE---EEcC--CCC-----cEEEEEeCCCeEEE
Q 039302 314 KS-ALM--SFKAHNADVNVI---SWNR--LAS-----CLLASGSDDGTFSI 351 (479)
Q Consensus 314 ~~-~~~--~~~~h~~~v~~l---~~~p--~~~-----~~l~sgs~dg~i~i 351 (479)
.. .+. ........|+++ ++.| .+. ..++.++.+|.|.+
T Consensus 211 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 211 GDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 11 111 112234567777 5555 221 24777888888874
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00045 Score=68.92 Aligned_cols=95 Identities=19% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEE-EEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVE-DLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
...+.-+.|+|.-+ .||.+..+|.|.+..++-...|. +.-|...|+ +++|.|+|+ ++|.|-.||+|+|.|+.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qRlwt-----ip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQRLWT-----IPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEeccceeEe-----ccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEcc
Confidence 34788999999998 99999999999999887444333 222444555 999999998 99999999999999999
Q ss_pred CCCceeeEEecCCCCEEEEEEcC
Q 039302 312 VGKSALMSFKAHNADVNVISWNR 334 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p 334 (479)
++.........-..+|.++-|.+
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCceeccccccccchheeeccc
Confidence 98633222244556788888875
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0089 Score=63.34 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=82.0
Q ss_pred CCCcEEecCCCCceEEEEeCCCC------CCeEEEEeCCCeEEEEecCCCCccccC--CCCcccCCCcEEEEEECCCCCc
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVA------PGRLVSGDCNSCIHLWEPASDATWNVD--PNPFIGHAASVEDLQWSPTESD 294 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~------~~~l~sg~~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~ 294 (479)
++.+..+..|... .-..+.|+. ...-+.|-.+..+..||++-.+...+. ...+ .......|++-+.+|
T Consensus 514 GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-- 589 (794)
T PF08553_consen 514 GKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDG-- 589 (794)
T ss_pred CcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCc--
Confidence 5666666666542 133444432 125667777899999999875422111 1112 234457788877766
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.||+|+.+|.||+||- .+......+.+-..+|..|..+.+|..+|||+ +..+.+++.
T Consensus 590 ~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 590 YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 6999999999999994 44334445667789999999999995455544 457777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0007 Score=67.61 Aligned_cols=94 Identities=19% Similarity=0.368 Sum_probs=77.1
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN-VISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
...+.-+.|+|.-. ++|.+..+|.|.+..+.- ..+.++..|+..++ +++|.|+| ++||.|-.||+|++.|..++.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCC
Confidence 34678899999988 999999999999998883 25667776777777 99999998 999999999999999999887
Q ss_pred CCCceEEE-eecCCCCeEEEEEeC
Q 039302 359 GGDSVVAH-FEYHKHPVTSIEWSP 381 (479)
Q Consensus 359 ~~~~~~~~-~~~h~~~I~~v~~sp 381 (479)
.+.. ...-...|.++-|.|
T Consensus 96 ----~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 ----RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----ceeccccccccchheeeccc
Confidence 3444 223456788888875
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.071 Score=49.03 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=94.9
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
.+.+-..++.+|+|+|+...++++....+.|...+.. +.... ...+.+ .+-...|++..++. ++++--.++.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDG-FGDYEGITYLGNGR-YVLSEERDQRLYI 90 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE--EEE-SS--SSEEEEEE-STTE-EEEEETTTTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCC-CCCceeEEEECCCE-EEEEEcCCCcEEE
Confidence 4556666899999999876467777778888777763 33322 223444 35688999986665 4444445899999
Q ss_pred EEcCCCCc-----eeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc-eEEEe------ecC
Q 039302 308 WDTRVGKS-----ALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS-VVAHF------EYH 370 (479)
Q Consensus 308 wD~~~~~~-----~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~-~~~~~------~~h 370 (479)
+++..... .+..+ ..++..+-.++|++.+..+++ +-...-..||.++....... .+... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99844321 11112 235667999999998845554 55555566666654110000 11111 123
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...+.+++++|..+.+++.+.....|.++|..
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 44678999999888888888889999999843
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.18 Score=50.70 Aligned_cols=201 Identities=11% Similarity=0.103 Sum_probs=109.6
Q ss_pred eeEEEEecCCCcEEEEEeCCce----EEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEeCCCCC
Q 039302 172 VNRIRAMSQNPHICASWADTGH----VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~----V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~ 246 (479)
+....++|++..++.+-+..|. |+++|+.+ ++.+. .+.. .....+.|.+++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t---------------------g~~l~d~i~~--~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET---------------------GKFLPDGIEN--PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT---------------------TEEEEEEEEE--EESEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC---------------------CcCcCCcccc--cccceEEEeCCCC
Confidence 4467889999666666555554 99999987 22222 1111 1222399999988
Q ss_pred CeEEEEeCC----------CeEEEEecCCCCccccCCCCcccCCC--cEEEEEECCCCCcEEEEEeCCC---cEEEEEcC
Q 039302 247 GRLVSGDCN----------SCIHLWEPASDATWNVDPNPFIGHAA--SVEDLQWSPTESDVFASCSVDG---NIAIWDTR 311 (479)
Q Consensus 247 ~~l~sg~~d----------g~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~ 311 (479)
+++.+...+ ..|+.|.+.+...... ..+..... ....+..+++++.+++...... .+.+.|+.
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~--lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE--LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E--EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhCe--eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 555665333 2478888866433211 11222222 2668889999996666555444 47888888
Q ss_pred CC---CceeeEEecCCCCE-EEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCCCceEEEeecCCCC--eEEEEEeCC
Q 039302 312 VG---KSALMSFKAHNADV-NVISWNRLASCLLASGS---DDGTFSIHDLRLLKGGDSVVAHFEYHKHP--VTSIEWSPH 382 (479)
Q Consensus 312 ~~---~~~~~~~~~h~~~v-~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~~~~~~~~~~h~~~--I~~v~~sp~ 382 (479)
.. ......+......+ ..+... .+ .+++... ..+.|.-.++..... ......+..|... +..+...
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~-- 335 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLF-- 335 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEE--
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEE--
Confidence 74 22333333333334 344444 33 4444332 235677778777652 0122255556653 5555544
Q ss_pred CCCEEEEEeCCC--cEEEEECC
Q 039302 383 EGSTLAVSSADN--QLTIWDLS 402 (479)
Q Consensus 383 ~~~~las~s~Dg--~I~iwdl~ 402 (479)
+..+++..-.++ .|+++++.
T Consensus 336 ~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 336 KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEEEEEECCccEEEEEECC
Confidence 446666666665 57888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.1 Score=50.47 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=88.9
Q ss_pred eEEEEeC---------C-CeEEEEecCCCC--ccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-
Q 039302 248 RLVSGDC---------N-SCIHLWEPASDA--TWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK- 314 (479)
Q Consensus 248 ~l~sg~~---------d-g~I~lwd~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~- 314 (479)
+|+.|.. . |.|.++++.... ........-....++|++|+-- +. .|+++. .+.|.+|++...+
T Consensus 44 ~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 44 YIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKT 119 (321)
T ss_dssp EEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSS
T ss_pred EEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCccc
Confidence 7777753 2 899999998741 0111111122346889998866 33 344333 5899999999876
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe--ecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~--~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
-...........+.++... + ++|+.|.....+.++..+.... .+..+ ......++++.+-+++ ..++.+..
T Consensus 120 l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~---~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~ 192 (321)
T PF03178_consen 120 LLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENN---KLILVARDYQPRWVTAAEFLVDE-DTIIVGDK 192 (321)
T ss_dssp EEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE----EEEEEEESS-BEEEEEEEE-SS-SEEEEEET
T ss_pred chhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCC---EEEEEEecCCCccEEEEEEecCC-cEEEEEcC
Confidence 2222222233366666665 3 6888998888888775443211 12222 2245678999998756 69999999
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
+|.|.++.....
T Consensus 193 ~gnl~~l~~~~~ 204 (321)
T PF03178_consen 193 DGNLFVLRYNPE 204 (321)
T ss_dssp TSEEEEEEE-SS
T ss_pred CCeEEEEEECCC
Confidence 999999998743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0008 Score=41.03 Aligned_cols=37 Identities=35% Similarity=0.675 Sum_probs=33.3
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
++..+..|...|+++.|+|.. .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 677788899999999999965 8999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00066 Score=41.43 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
+++..+..|...+.++.|++.+. .+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 44567778899999999999886 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.018 Score=56.95 Aligned_cols=204 Identities=15% Similarity=0.151 Sum_probs=103.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCC-
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNP- 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~- 243 (479)
....++|++++.+.-| ++|.|..+|.+.|.|+.... -+.... ... .... .....++++.|+.
T Consensus 83 ~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa-vI~~~~------------i~~-~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA-VIYNEN------------IRE-SFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp ---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE-EEEEEE------------GGG---T-SS----EEEEEEEEE
T ss_pred eccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe-EEeecc------------ccc-cccccccccCeeEEEEEEE
Confidence 3448999999999777 99999999999999996521 110000 000 0011 1233677788762
Q ss_pred --CCCC----eEEEEeCCCeEEEEecC--CCCccccCCCCc-ccCCCcEEEEE-ECCC-C-------------------C
Q 039302 244 --VAPG----RLVSGDCNSCIHLWEPA--SDATWNVDPNPF-IGHAASVEDLQ-WSPT-E-------------------S 293 (479)
Q Consensus 244 --~~~~----~l~sg~~dg~I~lwd~~--~~~~~~~~~~~~-~~h~~~V~~l~-~sp~-~-------------------~ 293 (479)
.+.+ .|++|.+.|.+.+|.+. .++.+.+..... ..+.++|..|. |+.+ + .
T Consensus 147 ~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~ 226 (395)
T PF08596_consen 147 TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP 226 (395)
T ss_dssp E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence 2222 78999999999999875 222222211111 24556665555 3221 1 1
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc----CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN----RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
.+++++ .+..++++..-+.+...+.+ .....+..+++- ..+...|++-..+|.|++|.+-..+ .+..+..
T Consensus 227 g~vVvv-Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk----ei~~~~l 300 (395)
T PF08596_consen 227 GYVVVV-SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK----EIKSVSL 300 (395)
T ss_dssp EEEEEE--SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT------EEEEEE-
T ss_pred cEEEEE-cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch----HhhcccC
Confidence 134444 47789999888765333333 222233344442 1233788888999999999999888 6766655
Q ss_pred CC----CCeEEEEEeCCCCCEEEEEeC
Q 039302 370 HK----HPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 370 h~----~~I~~v~~sp~~~~~las~s~ 392 (479)
+. ..+....+++++ ..++-.|.
T Consensus 301 ~~~~d~~~~~~ssis~~G-di~~~~gp 326 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISRNG-DIFYWTGP 326 (395)
T ss_dssp SS---HHHHTT-EE-TTS--EEEE-SS
T ss_pred CCccccccccccEECCCC-CEEEEeCc
Confidence 32 234456677755 55555543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.013 Score=57.67 Aligned_cols=143 Identities=10% Similarity=0.082 Sum_probs=89.2
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc------EEEEEeCCCcEEEEEcCCCCc-eeeEE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD------VFASCSVDGNIAIWDTRVGKS-ALMSF 320 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~------~l~s~s~dg~I~iwD~~~~~~-~~~~~ 320 (479)
+|.++..-..++--|+..+... ....-|.. |+-+.+.|+... .-+.|-.|..|.-||.|-... .+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4555666667777788775431 22222332 555566665431 123455688899999996543 22222
Q ss_pred ecC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 321 KAH----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 321 ~~h----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
..| ....+|.+-..+| +||+||.+|-|++||. .+.. .-..+.+-..+|..|..+.++ .+|++.+ +..+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~---AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~tyL 494 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRR---AKTALPGLGDAIKHVDVTADG-KWILATC-KTYL 494 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhh---hhhcccccCCceeeEEeeccC-cEEEEec-ccEE
Confidence 332 2345555555544 8999999999999997 3332 445678889999999999866 5554444 5667
Q ss_pred EEEECCC
Q 039302 397 TIWDLSL 403 (479)
Q Consensus 397 ~iwdl~~ 403 (479)
.+-++..
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 7777654
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.41 Score=47.87 Aligned_cols=181 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
+.|-++.|..+. .+++. ..||.+++||+.... .+.. ...+....-....+.+..+...| .+
T Consensus 81 ~~iv~~~wt~~e-~LvvV-~~dG~v~vy~~~G~~-~fsl--------------~~~i~~~~v~e~~i~~~~~~~~G--iv 141 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVV-QSDGTVRVYDLFGEF-QFSL--------------GEEIEEEKVLECRIFAIWFYKNG--IV 141 (410)
T ss_pred CCEEEEEECCCC-eEEEE-EcCCEEEEEeCCCce-eech--------------hhhccccCcccccccccccCCCC--EE
Confidence 899999999866 56655 799999999986532 1100 11111111112223333333233 33
Q ss_pred EEEeCCCeEEEEecCCCC-cccc-C--CCCcc-cCC-CcEEE-EEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 250 VSGDCNSCIHLWEPASDA-TWNV-D--PNPFI-GHA-ASVED-LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~-~~~~-~--~~~~~-~h~-~~V~~-l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+. ..++.|.+.+-.... .... . ..... .|. ..+.. ..++.+.. ..+....++.+.+.+-...+ . +.
T Consensus 142 vL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~-~---i~- 214 (410)
T PF04841_consen 142 VL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFK-Q---ID- 214 (410)
T ss_pred EE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccc-c---cc-
Confidence 22 223444443221211 1000 0 00000 010 01111 23444444 44444555566644433221 1 11
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSP 381 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp 381 (479)
..+++..|+.||++ .+||.-..+|.+.|....-.+ .+..+... ......+.|+-
T Consensus 215 ~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~----~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 215 SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSE----KLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccc----eeEEeecCcCCCCcEEEEEC
Confidence 24579999999999 899999999999998865544 45555443 34567788875
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.3 Score=49.15 Aligned_cols=184 Identities=14% Similarity=0.179 Sum_probs=95.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+-...-....+.++|++ ++++. +.+|.-.||.... ... . . .+......|.+.
T Consensus 28 lg~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~---------------------~r~-k-~---~G~g~~~vw~~~ 79 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA---------------------WRN-K-A---FGSGLSFVWSSR 79 (443)
T ss_dssp EEE-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT---------------------TEE-E-E---EEE-SEEEE-TS
T ss_pred CCCCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC---------------------Ccc-c-c---cCceeEEEEecC
Confidence 33445568999999999 55555 5567788887332 111 1 1 235667889983
Q ss_pred CCCeEEEEeCCCeEEEE-ecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 245 APGRLVSGDCNSCIHLW-EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lw-d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+ .+|+-...++|.|+ ++..... ..+.. ...+..|-. |. +|+..+. +.|.+||..+++ .+..+...
T Consensus 80 n--~yAv~~~~~~I~I~kn~~~~~~-----k~i~~-~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~-~i~~i~v~ 145 (443)
T PF04053_consen 80 N--RYAVLESSSTIKIYKNFKNEVV-----KSIKL-PFSVEKIFG---GN-LLGVKSS-DFICFYDWETGK-LIRRIDVS 145 (443)
T ss_dssp S--EEEEE-TTS-EEEEETTEE-TT-----------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT---EEEEESS-
T ss_pred c--cEEEEECCCeEEEEEcCccccc-----eEEcC-CcccceEEc---Cc-EEEEECC-CCEEEEEhhHcc-eeeEEecC
Confidence 3 78888888999996 4432211 11111 123555543 66 6666654 489999999885 55555532
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------CCC-CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL------KGG-DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~------~~~-~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+|..+.|++++ .++|..+.+ .+.|++.... ..+ ...+..+..-...|.+..|.-+ .++.|. .. .|
T Consensus 146 --~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~l 217 (443)
T PF04053_consen 146 --AVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HL 217 (443)
T ss_dssp --E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EE
T ss_pred --CCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eE
Confidence 48999999998 777777654 6677665433 000 0023333333678999999852 344443 33 77
Q ss_pred EE
Q 039302 397 TI 398 (479)
Q Consensus 397 ~i 398 (479)
+.
T Consensus 218 kY 219 (443)
T PF04053_consen 218 KY 219 (443)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.018 Score=45.07 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=67.8
Q ss_pred eEEEEe---CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 236 GYAIDW---NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 236 v~~l~~---s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
|.+|++ ..++...|++|+.|..|++|+-..- . ..+ ..+..|.+++-...+ .|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---~---~Ei-~e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---V---AEI-TETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---E---EEE-ecccceEEEEEcCCC--EEEEEecCCEEEEEeCcc
Confidence 445554 4455569999999999999985431 1 112 235678888877664 699999999999997643
Q ss_pred CCceeeEEecCCCCEEEEEE---cCCCCcEEEEEeCCCeEE
Q 039302 313 GKSALMSFKAHNADVNVISW---NRLASCLLASGSDDGTFS 350 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~---~p~~~~~l~sgs~dg~i~ 350 (479)
. +-..+. ...++++.+ +.++..-|++|-.+|.|-
T Consensus 73 R---lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 R---LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e---eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 233332 233555554 445556899999999874
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.061 Score=42.22 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=69.1
Q ss_pred EEEEEE---CCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 039302 283 VEDLQW---SPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 283 V~~l~~---sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~ 359 (479)
|+++++ ..++.+.|++||.|..||+|+-.. .+..+.. ...|++++-... ..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~--- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ--- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc---
Confidence 455554 445667999999999999997653 4444443 355777766654 4799999999999998643
Q ss_pred CCceEEEeecCCCCeEEEEEeCC---CCCEEEEEeCCCcEE
Q 039302 360 GDSVVAHFEYHKHPVTSIEWSPH---EGSTLAVSSADNQLT 397 (479)
Q Consensus 360 ~~~~~~~~~~h~~~I~~v~~sp~---~~~~las~s~Dg~I~ 397 (479)
.+-..+. +..++++.+..- +-.-|++|-.+|.|-
T Consensus 73 ---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2333332 334677766542 234789998888874
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.019 Score=61.53 Aligned_cols=200 Identities=14% Similarity=0.114 Sum_probs=118.1
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-ceEEEEeCCCCCCe-
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-EGYAIDWNPVAPGR- 248 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~~- 248 (479)
.-+.++.++.-..++| ++..+.+.|+-....+....... .........+..++.-|.. ++..+..+++....
T Consensus 43 ~sn~la~sn~ysl~Fa-~~nsk~L~vfgtknlLi~~it~D-----~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~ 116 (1405)
T KOG3630|consen 43 SSNNLAISNSYSLFFA-ASNSKSLAVFGTKNLLIDHITSD-----STNSLVDADENLTFKVEKEIPIVIFVCFHDATDSV 116 (1405)
T ss_pred hhhhhhcccccceEEE-ecCCcceeeeccccceeeccccc-----ccccccccccccceeeeccccceEEEeccCCceEE
Confidence 3456677776644444 46667777776554321110000 0011112233355555554 67777777775522
Q ss_pred EEEEeCCCeEEEEecCCCCccccC-CCCccc------CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVD-PNPFIG------HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~-~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++..+++-.|..||+.+-...... ..++.. ...-+.++.|+|.-...++.+..|+.|++.-+......+.++
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~- 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF- 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-
Confidence 233344447899999764321100 111222 233467889999887778899999999998877654333332
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----CCCCeEEEEEeCCC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----HKHPVTSIEWSPHE 383 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----h~~~I~~v~~sp~~ 383 (479)
.....+++++|+|.| ..++.|-..|++.-|-..-.. ...+.. -...|.+|.|-...
T Consensus 196 p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~lei-----k~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEI-----KSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred CcccceeeEEecccc-ceeeEecCCCeEEEeecccce-----eecccCCCcCCCcceeEEEEecce
Confidence 345678999999999 899999999999887643221 111111 14679999998644
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.3 Score=44.16 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=87.0
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
+.+++.|+..+.+.--|..+++.... . .. ...+.+-+.- -+. +++.|...|.+.+.+..++.. ...+..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We--~-il--g~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWE--A-IL--GVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQ-IWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEee--h-hh--CceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhh-eeeeeehhh
Confidence 34888888889888888888655221 1 11 2233333322 244 788999999999999999853 333332221
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
--......+++ .++..|+.|+..+..|.++.. ++...+--.+.-.+-+..|-+ ..|..+...|.|.--.
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~~----cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYG----CVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVT 163 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEecccccc----eEEecccCCceeccceecCCC-ceEEEEeccceEEEEc
Confidence 11222345556 799999999999999999887 677665433333444555633 3344444455544333
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.052 Score=55.74 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=76.0
Q ss_pred CCCCCcEEEEEeCCCcEEEEEcCC----CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC-----
Q 039302 289 SPTESDVFASCSVDGNIAIWDTRV----GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG----- 359 (479)
Q Consensus 289 sp~~~~~l~s~s~dg~I~iwD~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~----- 359 (479)
.++|+..++ .++.|.+.|.++ .. .+..+..-......+.++|++..+++++..+.+|.|+|+.+.+.
T Consensus 285 vkdGK~~~V---~gn~V~VID~~t~~~~~~-~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI---GGSKVPVVDGRKAANAGS-ALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE---CCCEEEEEECCccccCCc-ceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 456763333 267899999998 32 23333334556788999999977888888899999999988652
Q ss_pred ---CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 360 ---GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 360 ---~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
....+....--. .-...+|.+++ +.+.|.-.|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGl-GPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGL-GPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCC-CcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 011233333322 33467888865 7888888999999999976
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.41 Score=47.45 Aligned_cols=202 Identities=12% Similarity=0.123 Sum_probs=129.6
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..-+.+..++.+.++.++...+..|.+.|... ........ -......+++++++. .+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---------------------~~~~~~~~-vG~~P~~~~~~~~~~-~v 130 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---------------------NTVLGSIP-VGLGPVGLAVDPDGK-YV 130 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc---------------------cceeeEee-eccCCceEEECCCCC-EE
Confidence 34456788888877888877789999999655 22222221 112567899999997 55
Q ss_pred EEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee-E---Eec
Q 039302 250 VSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM-S---FKA 322 (479)
Q Consensus 250 ~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~-~---~~~ 322 (479)
..+.. ++++.+.|..+..... ....+. .+ ..++++|++...+++-..++.|.+.|..... ... . ...
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~---~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v~~~~~~~~~~ 204 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTA---TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-VVRGSVGSLVG 204 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEE---EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-eeccccccccc
Confidence 55444 6788888877654422 122222 23 8899999999566666689999999977653 221 0 111
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCCCCCceEEE-eecCCCCeEEEEEeCCCCCEEEEE-eCCCcEEE
Q 039302 323 HNADVNVISWNRLASCLLASGSDD--GTFSIHDLRLLKGGDSVVAH-FEYHKHPVTSIEWSPHEGSTLAVS-SADNQLTI 398 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~d--g~i~iwDlr~~~~~~~~~~~-~~~h~~~I~~v~~sp~~~~~las~-s~Dg~I~i 398 (479)
-...-..+.++|++....++-..+ +.+...|..+.. .... ...-......+..+|.+ ..+.+. +..+.+.+
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~----v~~~~~~~~~~~~~~v~~~p~g-~~~yv~~~~~~~V~v 279 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN----VTATDLPVGSGAPRGVAVDPAG-KAAYVANSQGGTVSV 279 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce----EEEeccccccCCCCceeECCCC-CEEEEEecCCCeEEE
Confidence 122346788999995555555554 689999988876 3333 22111145678899976 555544 55688999
Q ss_pred EECCCCC
Q 039302 399 WDLSLEK 405 (479)
Q Consensus 399 wdl~~~~ 405 (479)
-|.....
T Consensus 280 id~~~~~ 286 (381)
T COG3391 280 IDGATDR 286 (381)
T ss_pred EeCCCCc
Confidence 8887753
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0079 Score=63.94 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=77.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
.++.|+..|.+...|.+..-.+...-.....+|++++|+.+| .+++.|-.+|.|.+||+...+ +++.+..|..+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k----~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK----ILKVITEHGAPV 175 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc----ceeeeeecCCcc
Confidence 688899999999999987532333334456799999999999 899999999999999999887 788887777776
Q ss_pred EEEE---EeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 375 TSIE---WSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 375 ~~v~---~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+.+- |...+ ..+.++..-|. +|.+...
T Consensus 176 t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 176 TGVIFVGRTSQN-SKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred ceEEEEEEeCCC-cEEEEccCCCc--eEEEEec
Confidence 6654 33333 56777766666 6665443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0028 Score=55.84 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=84.2
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
|..-+.+|.|+-++++...... ....+ +.+..--+.....++.|+.+|.|.+|.........-.+......|-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~-rse~~------~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESC-RSERF------IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID 105 (238)
T ss_pred hccccCCcccccchhhhhhhhh-hhhhh------hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccce
Confidence 4444558888877775432211 01111 1222222222337899999999999987733211111111222333
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEE--eCCCcEEEEECCCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVS--SADNQLTIWDLSLEK 405 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~--s~Dg~I~iwdl~~~~ 405 (479)
++--+-+.+.+..+++.||.|+.|++.-.+ .+-....|+ .++.....+..+ ..++.+ |.|..++.|++....
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k----~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNK----VLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCc----eeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 333232233689999999999999998776 455555666 566555555533 667777 778888888887654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.19 Score=51.82 Aligned_cols=110 Identities=7% Similarity=-0.011 Sum_probs=72.3
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc------
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS------ 315 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~------ 315 (479)
.++++ +... .++.|.+.|..+..........+..-......+.++|+++.+++++..+.+|.|.|+.+.+.
T Consensus 285 vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCC-EEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 34555 3333 25789999987610000001112223456778999999997778888899999999987542
Q ss_pred -----eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 316 -----ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 316 -----~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
.+..... ...-...+|.+++ +.+.|-.-|..|..|++..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 1122222 2233457899988 7888888999999999875
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.22 Score=49.66 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=82.0
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NA 325 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~ 325 (479)
.++.++.+|.+..+|+.++.. |. ..+. ....+.. .+. .+..++.+|.|..+|..+++ .+-....- ..
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~---~~~~----~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~ 326 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWK---REYG----SVNDFAV--DGG-RIYLVDQNDRVYALDTRGGV-ELWSQSDLLHR 326 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEe---ecCC----CccCcEE--ECC-EEEEEcCCCeEEEEECCCCc-EEEcccccCCC
Confidence 677778899999999987654 22 1111 1111222 234 56777889999999998875 22222111 11
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS-IEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
...+.... + ..|+.++.+|.|.+.|..+++ .+...+.....+.+ ..+. + ..|+.++.||.|+.+++
T Consensus 327 ~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~----~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 327 LLTAPVLY--N-GYLVVGDSEGYLHWINREDGR----FVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAITR 393 (394)
T ss_pred cccCCEEE--C-CEEEEEeCCCEEEEEECCCCC----EEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEEeC
Confidence 11222222 3 567888999999999999887 66666543333332 2222 3 57888899999988765
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.044 Score=58.57 Aligned_cols=100 Identities=16% Similarity=0.266 Sum_probs=68.6
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..++.|++.|.|-..|+... ..++..-..-.++|.+++|+.+|. +++.|-.+|.|.+||
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------------------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------------------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------------------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEE
Confidence 57888899999999998873 233222223356999999999998 999999999999999
Q ss_pred cCCCCccccCCCCcccCCCcEEE---EEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 263 PASDATWNVDPNPFIGHAASVED---LQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~---l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
+..+... +.+..|..+++. +.+...+. .+.++..-|. +|.+
T Consensus 159 ~~~~k~l----~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 159 MHRAKIL----KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcce----eeeeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 9875543 223334444333 33444444 6777776675 5544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.77 Score=43.79 Aligned_cols=199 Identities=10% Similarity=0.014 Sum_probs=107.2
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
.|.+....++.+--..+.|+-|+.... ....+.... .+.++..-..+. +|+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g----------------------~~~~~~~p~-~~~~~~~~d~~g-~Lv~~~-- 84 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG----------------------KKRVFPSPG-GFSSGALIDAGG-RLIACE-- 84 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC----------------------ceEEEECCC-CcccceeecCCC-eEEEEc--
Confidence 466766567777667788888887641 112232222 223333333332 566654
Q ss_pred CeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEe-----CC---CcEEEEEcC-CCCceeeEEecCCC
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCS-----VD---GNIAIWDTR-VGKSALMSFKAHNA 325 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s-----~d---g~I~iwD~~-~~~~~~~~~~~h~~ 325 (479)
..+.++++.++...........+. ....+++...|+|..+|-+.+ .. ..-.+|-+. .+. ....+..+-.
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l~~~~~~ 163 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRLLDDDLT 163 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEeecCcEE
Confidence 345566665443312111222222 246788999999983333333 11 011344443 222 3333344455
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--CCCCCc-eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-cEEEEEC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRL--LKGGDS-VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN-QLTIWDL 401 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~--~~~~~~-~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg-~I~iwdl 401 (479)
.-|.|+|+|++..++++=+..+.|.-|++.. +..... ....+....+..-.++...++ ++.+++..+| .|.+|+.
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECC
Confidence 5689999999977777777778999888763 211111 122233344555566776644 6664444443 8999988
Q ss_pred C
Q 039302 402 S 402 (479)
Q Consensus 402 ~ 402 (479)
.
T Consensus 243 d 243 (307)
T COG3386 243 D 243 (307)
T ss_pred C
Confidence 7
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0093 Score=52.62 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=60.4
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC-CC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN-AD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~-~~ 326 (479)
.++.|+.+|.|.+|+.+..+... ..+..-..+|.++--.-+..++..+++.||.|+.|++.-.+ .+-....|. .+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNFES 147 (238)
T ss_pred eEEeecccceEEEecCCccchHH---HhhhcccccceeccccccccceeEEeccCCceeeeccccCc-eeeeeccccCCC
Confidence 89999999999999986432211 11111122333332222222388889999999999998765 344444454 33
Q ss_pred EEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCC
Q 039302 327 VNVISWNRLASCLLASG--SDDGTFSIHDLRLL 357 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sg--s~dg~i~iwDlr~~ 357 (479)
+.....+..+ .+|+.. |.|..++.|++...
T Consensus 148 ~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 148 GEELIVVGSD-EFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cceeEEecCC-ceEEeeccccchhhhhcchhhh
Confidence 4333333333 455555 56666666666543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.28 Score=49.55 Aligned_cols=124 Identities=10% Similarity=0.183 Sum_probs=78.0
Q ss_pred CCCceEEEEeCCCCCC---eEEEEeCCCeEEEEecCCCCc----cccCCCCcccCCCc--EEEEEECCCCCcEEEEEeCC
Q 039302 232 HKDEGYAIDWNPVAPG---RLVSGDCNSCIHLWEPASDAT----WNVDPNPFIGHAAS--VEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~---~l~sg~~dg~I~lwd~~~~~~----~~~~~~~~~~h~~~--V~~l~~sp~~~~~l~s~s~d 302 (479)
.=..|+++.|.|-+.. .|++.-....|.+|.+..... +.....--.+..-+ -..+.|+|... +|++-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecC
Confidence 3347899999997432 456666688999999853211 11100000000111 24578999988 77776666
Q ss_pred CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 303 GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 303 g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
..-.+++++.....+..-....+-|.|.+|.++|.+++++.+..=.-+|||-..
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 665677887665433332345677999999999966666666656678998643
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.2 Score=44.29 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=104.8
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--CCCcEEEEEcCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--VDGNIAIWDTRV 312 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~dg~I~iwD~~~ 312 (479)
.-..++.++.+...+++...+..|.+.|..+..... ....+ .....++++|+++.+.++-. .++++.+.|..+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~---~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG---SIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceee---Eeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 345678888887556666667899999965543321 11112 25678999999986666666 478999999888
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE-----EeecCCCCeEEEEEeCCCCCEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA-----HFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~-----~~~~h~~~I~~v~~sp~~~~~l 387 (479)
.+ ..........+ ..+++.|++...+++-..++.|.+.|..... ... .... ...-..+.++|++....
T Consensus 150 ~~-~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~----v~~~~~~~~~~~-~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 150 NK-VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS----VVRGSVGSLVGV-GTGPAGIAVDPDGNRVY 222 (381)
T ss_pred Ce-EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc----eecccccccccc-CCCCceEEECCCCCEEE
Confidence 75 44444433344 8899999996677777789999999976654 221 1221 22336788999774444
Q ss_pred EEEeCC--CcEEEEECCCC
Q 039302 388 AVSSAD--NQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~D--g~I~iwdl~~~ 404 (479)
++...+ +.+...|....
T Consensus 223 V~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 223 VANDGSGSNNVLKIDTATG 241 (381)
T ss_pred EEeccCCCceEEEEeCCCc
Confidence 444444 68888888775
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.031 Score=55.18 Aligned_cols=126 Identities=11% Similarity=0.155 Sum_probs=82.5
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCC------eEEEEeCCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECCCCC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPG------RLVSGDCNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSPTES 293 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sg~~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~ 293 (479)
++.+..+.-|.. |.-+.+.|+..+ .-+.|-.+..|+-||++-.+...+ ....+.. ...-.|++-..+|
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~-k~nFsc~aTT~sG- 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST-KNNFSCFATTESG- 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc-ccccceeeecCCc-
Confidence 566666766665 777788887653 234566788999999975444111 0111111 2234555555444
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 355 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr 355 (479)
++++||.+|.||+||- .+......+.+-..+|..|..+.+|..+|+|+ +..+.+.+++
T Consensus 443 -~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 -YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred -eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 7999999999999997 44334455678889999999999995444443 5677777765
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.3 Score=44.43 Aligned_cols=205 Identities=11% Similarity=0.071 Sum_probs=104.6
Q ss_pred EEEecCCCcEEEEEeCC----------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc--eEEEEeC
Q 039302 175 IRAMSQNPHICASWADT----------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE--GYAIDWN 242 (479)
Q Consensus 175 v~~~p~~~~~lat~s~d----------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s 242 (479)
+.|.+++..++.+.... ..|+.|.+.+.. ......+...... ...+..+
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-------------------~~d~lvfe~~~~~~~~~~~~~s 235 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-------------------SEDELVFEEPDEPFWFVSVSRS 235 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G-------------------GG-EEEEC-TTCTTSEEEEEE-
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh-------------------HhCeeEEeecCCCcEEEEEEec
Confidence 99999987777775433 247888887632 1222444443332 5688899
Q ss_pred CCCCCeEEE-EeCC---CeEEEEecCCCCccccCCCCcccCCCcE-EEEEECCCCCcEEEEEe---CCCcEEEEEcCCCC
Q 039302 243 PVAPGRLVS-GDCN---SCIHLWEPASDATWNVDPNPFIGHAASV-EDLQWSPTESDVFASCS---VDGNIAIWDTRVGK 314 (479)
Q Consensus 243 ~~~~~~l~s-g~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~~l~s~s---~dg~I~iwD~~~~~ 314 (479)
+++. +|+. .... ..+.+.++............+......+ ..+... .+. +++... ..+.|.-.++....
T Consensus 236 ~d~~-~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 236 KDGR-YLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TTSS-EEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTS
T ss_pred Cccc-EEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccc
Confidence 9988 5443 3333 2477777765310000011222223333 333333 333 444432 34667777887764
Q ss_pred c--eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEE
Q 039302 315 S--ALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~--~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las 389 (479)
. ....+..+...+.-..+...+..+++....++ .|+++++.... ....+.. -.+.|..+...+....++++
T Consensus 313 ~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~----~~~~~~~p~~g~v~~~~~~~~~~~~~~~ 388 (414)
T PF02897_consen 313 PAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK----ESREIPLPEAGSVSGVSGDFDSDELRFS 388 (414)
T ss_dssp GGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE----EEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred cccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc----EEeeecCCcceEEeccCCCCCCCEEEEE
Confidence 2 12244556554333334444446777776666 58899998222 2333332 23446666666655455555
Q ss_pred EeC---CCcEEEEECCCCC
Q 039302 390 SSA---DNQLTIWDLSLEK 405 (479)
Q Consensus 390 ~s~---Dg~I~iwdl~~~~ 405 (479)
-+. -++|..||+.+++
T Consensus 389 ~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 389 YSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETTEEEEEEEEETTTTC
T ss_pred EeCCCCCCEEEEEECCCCC
Confidence 443 4578888887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.3 Score=44.11 Aligned_cols=143 Identities=14% Similarity=0.071 Sum_probs=80.0
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCC-CcccCC-CcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPN-PFIGHA-ASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~-~~~~h~-~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++.++.+|.+..+|..++.. |..... ....+. .....+.-+| .+. .++.++.+|.+..+|..+++ .+-....
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~ 284 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRSGQ-IVWKREY 284 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCCCC-EEEeecC
Confidence 567777889999988877643 221110 000000 0011111122 134 56667789999999999886 2322211
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.....+.. .+ ..|..++.+|.+..+|..+++ .+-....- .....+.... + ..|+.++.||.|.+.|.
T Consensus 285 --~~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 285 --GSVNDFAV--DG-GRIYLVDQNDRVYALDTRGGV----ELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINR 352 (394)
T ss_pred --CCccCcEE--EC-CEEEEEcCCCeEEEEECCCCc----EEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEEC
Confidence 11112222 23 466777889999999998876 33322211 1112222232 3 57788899999999998
Q ss_pred CCC
Q 039302 402 SLE 404 (479)
Q Consensus 402 ~~~ 404 (479)
.++
T Consensus 353 ~tG 355 (394)
T PRK11138 353 EDG 355 (394)
T ss_pred CCC
Confidence 876
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.1 Score=41.45 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=101.6
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
|-...+.+|.|+|+.+ .|.+..+...-.||=...+..... .++.+- .....|.+.-.+. +.++--.++.+.++-+
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~Gdlirt--iPL~g~-~DpE~Ieyig~n~-fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRT--IPLTGF-SDPETIEYIGGNQ-FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEE--eccccc-CChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence 4445699999999998 777766666666665545444332 333332 2345667776655 5555556788888776
Q ss_pred CCCCc---------eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------CCCe
Q 039302 311 RVGKS---------ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------KHPV 374 (479)
Q Consensus 311 ~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------~~~I 374 (479)
..... ++......+.+.-.++|.|.. ..|..+-.-.-+.||......... .+.....+ -..|
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeecc
Confidence 65421 111112226678899999999 555555565656666554322100 11111111 2357
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.++.|++..+.+|+-+.+++.+.-.|+.-.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 788999877788888888888888877654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.19 Score=54.29 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=91.4
Q ss_pred CcceeEEEEecCCCcEEEEE-eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE---ecCCCCceEEEEeCCC
Q 039302 169 QGCVNRIRAMSQNPHICASW-ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK---FGGHKDEGYAIDWNPV 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~s~~ 244 (479)
.-.|..+...++.....+.- +.+-.|..||+......... +..++.. ......-+.++.|+|.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-------------~~~pl~~s~ts~ek~vf~~~~~wnP~ 166 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-------------TTVPLKNSATSFEKPVFQLKNVWNPL 166 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-------------hccccccccchhccccccccccccCC
Confidence 34566666777753333222 33446889999774322210 1122111 1112235678999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe---
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--- 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--- 321 (479)
-....+.+..|+.|++..+....... .. ..-+..+++++|+|.|. .++.|-..|++.-|-..-.. ...+.
T Consensus 167 vp~n~av~l~dlsl~V~~~~~~~~~v---~s-~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~lei--k~~ip~Pp 239 (1405)
T KOG3630|consen 167 VPLNSAVDLSDLSLRVKSTKQLAQNV---TS-FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEI--KSEIPEPP 239 (1405)
T ss_pred ccchhhhhccccchhhhhhhhhhhhh---cc-cCcccceeeEEeccccc-eeeEecCCCeEEEeecccce--eecccCCC
Confidence 87778888899999998875432211 11 22356789999999999 89999999999988654321 11111
Q ss_pred -cCCCCEEEEEEcCCC
Q 039302 322 -AHNADVNVISWNRLA 336 (479)
Q Consensus 322 -~h~~~v~~l~~~p~~ 336 (479)
.-...|.+|+|-...
T Consensus 240 ~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 240 VEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cCCCcceeEEEEecce
Confidence 114679999998766
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.2 Score=40.49 Aligned_cols=141 Identities=17% Similarity=0.099 Sum_probs=86.1
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
..++...+++.||..+.+.--|..+ ++.... .-+-.-+..++- -++ +++.|...
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~s---------------------G~~~We~ilg~RiE~sa~v---vgd-fVV~GCy~ 72 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQS---------------------GNLIWEAILGVRIECSAIV---VGD-FVVLGCYS 72 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCC---------------------CcEEeehhhCceeeeeeEE---ECC-EEEEEEcc
Confidence 4455567888889999988888776 222211 111122333333 344 89999999
Q ss_pred CeEEEEecCCCCc-cccCCCCcccCCCcE-EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc
Q 039302 256 SCIHLWEPASDAT-WNVDPNPFIGHAASV-EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333 (479)
Q Consensus 256 g~I~lwd~~~~~~-~~~~~~~~~~h~~~V-~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~ 333 (479)
|.+++.+.+++.. |. +... ..| ...+..+++. ++..|+.|++....|.++.. ++.+.+.......+-+.+
T Consensus 73 g~lYfl~~~tGs~~w~-----f~~~-~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~ 144 (354)
T KOG4649|consen 73 GGLYFLCVKTGSQIWN-----FVIL-ETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIA 144 (354)
T ss_pred CcEEEEEecchhheee-----eeeh-hhhccceEEcCCCc-eEEEecCCCcEEEecccccc-eEEecccCCceeccceec
Confidence 9999999998744 32 1111 111 1234567777 99999999999999999875 666655444444444556
Q ss_pred CCCCcEEEEEeCCCeEEE
Q 039302 334 RLASCLLASGSDDGTFSI 351 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~i 351 (479)
|-. .-|..+...|.|.-
T Consensus 145 ~g~-~sly~a~t~G~vla 161 (354)
T KOG4649|consen 145 PGD-GSLYAAITAGAVLA 161 (354)
T ss_pred CCC-ceEEEEeccceEEE
Confidence 633 23333344454443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.33 Score=49.03 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=81.4
Q ss_pred EEecCCcceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----
Q 039302 164 RKVAHQGCVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD----- 234 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----- 234 (479)
..++.-..|..+.|.|-+ +.+||. .....|.||.+....... .+.+..-..+-.
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~----------------~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTER----------------NKLLMSQTCEIREPFPV 113 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCcccc----------------ccceeeeeeeccCCccc
Confidence 345667789999999964 678887 667899999997522111 122221111111
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
--.++-|+|... .|+.-.....-.++++........ ..+ .-.+-|.|.+|.++|..++++.+..=.-+|||-...
T Consensus 114 LpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 114 LPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 123678999987 777766555545667655433221 112 345789999999999966666665556778886543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.9 Score=42.05 Aligned_cols=140 Identities=6% Similarity=-0.007 Sum_probs=66.1
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCCeEEEEeC
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPGRLVSGDC 254 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l~sg~~ 254 (479)
+|.++|.++|.++..+|.-.+|-++-. ...+..+.... .......+++... .|+-...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~--------------------t~~i~QLTdg~g~~~~g~~~s~~~~-~~~Yv~~ 100 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLA--------------------TGEITQLTDGPGDNTFGGFLSPDDR-ALYYVKN 100 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETT--------------------T-EEEE---SS-B-TTT-EE-TTSS-EEEEEET
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcc--------------------cCEEEECccCCCCCccceEEecCCC-eEEEEEC
Confidence 567778888888777877666655441 22233343332 2233456677776 6555545
Q ss_pred CCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC--CCCCcEEEEEeC----------------------CCcEEEEEc
Q 039302 255 NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS--PTESDVFASCSV----------------------DGNIAIWDT 310 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~l~s~s~----------------------dg~I~iwD~ 310 (479)
...|.-.|+.+.+... .+.-...-+-...|. .++. .++-.-. ...|.-.|+
T Consensus 101 ~~~l~~vdL~T~e~~~----vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV----VYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE----EEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE----EEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 5678888887754321 122233334344553 2333 3332211 112444566
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEE
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASG 343 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg 343 (479)
++++ ...+..-...+.-+.|+|..+.+|+-|
T Consensus 176 ~tG~--~~~v~~~~~wlgH~~fsP~dp~li~fC 206 (386)
T PF14583_consen 176 KTGE--RKVVFEDTDWLGHVQFSPTDPTLIMFC 206 (386)
T ss_dssp TT----EEEEEEESS-EEEEEEETTEEEEEEEE
T ss_pred CCCc--eeEEEecCccccCcccCCCCCCEEEEe
Confidence 6654 333333456778888888886666665
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.3 Score=46.42 Aligned_cols=183 Identities=16% Similarity=0.132 Sum_probs=96.9
Q ss_pred cceeEEEEecCCCcEEEEEe-----CCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 170 GCVNRIRAMSQNPHICASWA-----DTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s-----~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+...+++|++..++++.. .++ .|.+++... .....+.+. ....-.|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------------------~~~~lt~g~--~~t~PsWs 405 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------------------VAVQVLEGH--SLTRPSWS 405 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------------------cceeeecCC--CCCCceEC
Confidence 35778899999976666652 233 444445432 111112232 36778999
Q ss_pred CCCCCeEEEEeCC------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE---
Q 039302 243 PVAPGRLVSGDCN------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI--- 307 (479)
Q Consensus 243 ~~~~~~l~sg~~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i--- 307 (479)
|++. .|++.... +.+.+.++..+.. .. ...+.|..+.|||+|. .++... +|.|.+
T Consensus 406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-----~~--~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-----AS--RVPGPISELQLSRDGV-RAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchh-----hh--ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEE
Confidence 9976 66665422 2233333322111 11 2346799999999999 444444 477766
Q ss_pred EEcCCCCcee---eEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeC
Q 039302 308 WDTRVGKSAL---MSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSP 381 (479)
Q Consensus 308 wD~~~~~~~~---~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp 381 (479)
-....+...+ ..+. .-...+..+.|..++ .+ +++..++...+|-+.-... ....+.. ...++.+|+=++
T Consensus 476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~---~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGS---NSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred EeCCCCceeecccEEeecccCCccccceEecCC-EE-EEEecCCCCceEEEecCCc---cccccCCCCccCceEEEecCC
Confidence 3322232111 1122 223336889999988 54 4555555555565443331 1111122 356777888776
Q ss_pred CCCCEEEEEeCCC
Q 039302 382 HEGSTLAVSSADN 394 (479)
Q Consensus 382 ~~~~~las~s~Dg 394 (479)
+ .++....++
T Consensus 551 -~--~iyv~~~~g 560 (591)
T PRK13616 551 -S--TVYVTDARA 560 (591)
T ss_pred -c--eEEEEcCCc
Confidence 2 344555566
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.84 Score=42.85 Aligned_cols=143 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE--------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-------- 319 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-------- 319 (479)
.|+.|..+| +.++++.....+. ...+..+|..+...|.-+ .+++-+ |+.+.++++.........
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~-----~i~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPT-----RILKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred EEEEEECCC-EEEEEecCCccce-----eEeecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 899998888 8999983322211 112334499999998877 555544 599999998865422100
Q ss_pred -----EecCCCCEEEEE--EcCCCCcEEEEEeCCCeEEEEeCCCCCCCC-ceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 320 -----FKAHNADVNVIS--WNRLASCLLASGSDDGTFSIHDLRLLKGGD-SVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 320 -----~~~h~~~v~~l~--~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~-~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.......+...+ -...+...|+. .....|.+|......... .....+.. ...+.+++|.+ ..|+.|.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~~ 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVGT 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEEe
Confidence 111223444444 12233234444 445589998887642212 25555554 57889999984 5677776
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
.++ ..+.|+.+.
T Consensus 156 ~~~-f~~idl~~~ 167 (275)
T PF00780_consen 156 SKG-FYLIDLNTG 167 (275)
T ss_pred CCc-eEEEecCCC
Confidence 444 777888854
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.75 Score=45.03 Aligned_cols=163 Identities=16% Similarity=0.126 Sum_probs=104.3
Q ss_pred CceeEEEEecCCc------ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC
Q 039302 158 TPILQLRKVAHQG------CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG 231 (479)
Q Consensus 158 ~p~~~~~~~~H~~------~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (479)
...+-+.++.|+. +-|.+-|...+..++|+-| |.+.=|-+.... ...++..-..
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNkqlfavrS--ggatgvvvkgpn------------------dDVpiSfdm~ 64 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRS--GGATGVVVKGPN------------------DDVPISFDMD 64 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcceEEEEec--CCeeEEEEeCCC------------------CCCCceeeec
Confidence 3345566777763 3455666655656666643 556667665521 1233333334
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
..++|.++.||++++ .||.--.+..|.+++....+.........+..+..|....|+.+- -+|..+..| +-+|-+.
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 566999999999998 999999999999999854333221112233345568899998763 466655444 7777766
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
..+..+...+.|+..|+--.|.++..-.|++.+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 655556667888899999999998733333333
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2 Score=41.02 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=69.9
Q ss_pred ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--C---Cc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC-eE
Q 039302 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--G---KS-ALMSFKAHNADVNVISWNRLASCLLASGSDDG-TF 349 (479)
Q Consensus 277 ~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~--~---~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg-~i 349 (479)
..+-..-+.|+|||+++.++++=+..+.|.-|++.. . .. ....+....+..-.++...++ ++.+++...| .|
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v 237 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRV 237 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceE
Confidence 333445678999999986666666678898888762 1 11 111222334555667777777 6665444444 89
Q ss_pred EEEeCCCCCCCCceEEEeecCCCCeEEEEEeC-CCCCEEEEEeC
Q 039302 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP-HEGSTLAVSSA 392 (479)
Q Consensus 350 ~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp-~~~~~las~s~ 392 (479)
.+|+.. ++ .+..+......+++++|-- ....+++++..
T Consensus 238 ~~~~pd-G~----l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 238 VRFNPD-GK----LLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEECCC-Cc----EEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 999988 65 6777777667788888853 22344444443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.16 Score=53.14 Aligned_cols=138 Identities=10% Similarity=0.153 Sum_probs=86.8
Q ss_pred CcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC--CCC
Q 039302 169 QGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN--PVA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~ 245 (479)
...||.|....-+ ..+|+.|.+||.|.+|.+..-...+.......... ......+|...+.. ...+++|+++ ...
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRV-GASAWGLDIHDYKKS 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeec-CCceeEEEEEecCcc
Confidence 4457777766644 46888899999999998865433322220000000 00023456666653 3489999998 655
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC--Cc---EEEEEeCCCcEEEEEc
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SD---VFASCSVDGNIAIWDT 310 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~---~l~s~s~dg~I~iwD~ 310 (479)
. +||++++...|.||-......... ...-..|...|-+|+|-++. .. .+++++-.|.+.+|++
T Consensus 178 r-lIAVSsNs~~VTVFaf~l~~~r~~-~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 R-LIAVSSNSQEVTVFAFALVDERFY-HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred e-EEEEecCCceEEEEEEeccccccc-cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5 888888888888887654211110 11112255678899997765 22 6788899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.049 Score=35.66 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPA 264 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~ 264 (479)
...|.+++|+|..+ +||.|..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 34699999999998 99999999999999984
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.04 Score=36.08 Aligned_cols=31 Identities=19% Similarity=0.568 Sum_probs=27.9
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|..++|+|.. .+||.++.+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence 4579999999976 899999999999999994
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.5 Score=40.47 Aligned_cols=205 Identities=14% Similarity=0.171 Sum_probs=111.7
Q ss_pred cceeEEEEecCCCcEEEEEeCCce-EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWADTGH-VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.....|.++|.-+.-++-+-.-|+ ..+||.+...... ......-..|.+|. .|||++. +
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv-------------~~~s~~~RHfyGHG------vfs~dG~-~ 127 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV-------------TLVSQEGRHFYGHG------VFSPDGR-L 127 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE-------------EEecccCceeeccc------ccCCCCc-E
Confidence 445567888887777777777676 4688887621100 00011223455665 5899997 6
Q ss_pred EEEEeC-----CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE--------EcCCCCc
Q 039302 249 LVSGDC-----NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW--------DTRVGKS 315 (479)
Q Consensus 249 l~sg~~-----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw--------D~~~~~~ 315 (479)
|...-+ -|.|-|||.+.+-. . ...+..|.-.-..+.|.++|+ .++.+. |-|... ++.+.+.
T Consensus 128 LYATEndfd~~rGViGvYd~r~~fq-r--vgE~~t~GiGpHev~lm~DGr-tlvvan--GGIethpdfgR~~lNldsMeP 201 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREGFQ-R--VGEFSTHGIGPHEVTLMADGR-TLVVAN--GGIETHPDFGRTELNLDSMEP 201 (366)
T ss_pred EEeecCCCCCCCceEEEEecccccc-e--ecccccCCcCcceeEEecCCc-EEEEeC--CceecccccCccccchhhcCc
Confidence 666533 36899999875322 2 255777777788999999999 555442 323332 2222221
Q ss_pred eeeEEe---------------cCCCCEEEEEEcCCCCcEEEEEeCCCeE-----EEEeCCCCCCCCceEEEeec------
Q 039302 316 ALMSFK---------------AHNADVNVISWNRLASCLLASGSDDGTF-----SIHDLRLLKGGDSVVAHFEY------ 369 (479)
Q Consensus 316 ~~~~~~---------------~h~~~v~~l~~~p~~~~~l~sgs~dg~i-----~iwDlr~~~~~~~~~~~~~~------ 369 (479)
.+.-+. -+...|..++..+++ ..++.+-..|.- .+=-.+.++ ++.-+..
T Consensus 202 Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~----~l~~~~~pee~~~ 276 (366)
T COG3490 202 SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGE----PLEFLDLPEEQTA 276 (366)
T ss_pred cEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCC----cCcccCCCHHHHH
Confidence 111111 223345555666555 333332222210 000001111 2222111
Q ss_pred -CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 370 -HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 370 -h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
-...|-+|+.+...+.+.+|+=..+...+||..++.
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 124577888887676666676677888999999884
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.6 Score=45.72 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=100.1
Q ss_pred CcEEEEEeCCc------eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 182 PHICASWADTG------HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 182 ~~~lat~s~dg------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
..+++.|+..+ .|..||..... ...+..+. +.....+++.... . ..++|+.+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~-------------------w~~~a~m~-~~r~~~~~~~~~~-~-lYv~GG~~ 342 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNE-------------------WSSLAPMP-SPRCRVGVAVLNG-K-LYVVGGYD 342 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCc-------------------EeecCCCC-cccccccEEEECC-E-EEEEcccc
Confidence 36777777764 57777776631 11222222 1122334444432 3 78888888
Q ss_pred -C-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-----EEEEEcCCCCc-eeeEEecC
Q 039302 256 -S-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN-----IAIWDTRVGKS-ALMSFKAH 323 (479)
Q Consensus 256 -g-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~-----I~iwD~~~~~~-~~~~~~~h 323 (479)
| ++..||..+.. |.. ..++.......-...+ .|. +.|+||.||. |-.||.++.+- .+......
T Consensus 343 ~~~~~l~~ve~YD~~~~~-W~~-~a~M~~~R~~~~v~~l--~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~ 417 (571)
T KOG4441|consen 343 SGSDRLSSVERYDPRTNQ-WTP-VAPMNTKRSDFGVAVL--DGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR 417 (571)
T ss_pred CCCcccceEEEecCCCCc-eec-cCCccCccccceeEEE--CCE-EEEEeccccccccccEEEecCCCCcccccCCCCcc
Confidence 3 57788887743 553 2223222222222222 244 8999998864 77788877631 11111111
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCC------eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc--
Q 039302 324 NADVNVISWNRLASCLLASGSDDG------TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ-- 395 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg------~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~-- 395 (479)
......+.+. +.+.++||.++ ++..||..+.. +..+..+..-........+ ++.+.+.||.|+.
T Consensus 418 r~~~gv~~~~---g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 418 RSGHGVAVLG---GKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSA 489 (571)
T ss_pred eeeeEEEEEC---CEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEEEE---CCEEEEECCccCCCc
Confidence 2223333333 37888888665 46788887765 3233333222222222233 3488888888763
Q ss_pred ---EEEEECCCCC
Q 039302 396 ---LTIWDLSLEK 405 (479)
Q Consensus 396 ---I~iwdl~~~~ 405 (479)
|..||..+..
T Consensus 490 ~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 490 LSSVERYDPETNQ 502 (571)
T ss_pred cceEEEEcCCCCc
Confidence 6677777653
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.4 Score=41.92 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=78.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...-.+.++.+..++++ .++|+++......-|+-... ...+. -+.....|..|.|.|+
T Consensus 140 ~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~-------------------~w~~~--~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 140 VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQT-------------------TWQPH--NRNSSRRIQSMGFSPD 197 (302)
T ss_dssp E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S-------------------S-EEE--E--SSS-EEEEEE-TT
T ss_pred ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCc-------------------cceEE--ccCccceehhceecCC
Confidence 34555889999999999 67777554444457775431 12222 2234568999999999
Q ss_pred CCCeEEEEeCCCeEEEEe-cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE---
Q 039302 245 APGRLVSGDCNSCIHLWE-PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--- 320 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--- 320 (479)
+. +.+ ....|.|++=+ ......|.....+.....-.+.+++|.+.+. ++|+|+ .|++. .....++. -...
T Consensus 198 ~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGkt-W~~~~~~ 271 (302)
T PF14870_consen 198 GN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKT-WQKDRVG 271 (302)
T ss_dssp S--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS--EE-GGG
T ss_pred CC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCcc-ceECccc
Confidence 75 444 44788988877 2222333322222322334589999999877 777666 55443 34555542 2222
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
..-...++.|.|.+.. .-++. +.+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~~-~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPD-KGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETT-EEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCC-ceEEE-CCCcEEEEe
Confidence 1234568888887654 45554 567877655
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.1 Score=41.49 Aligned_cols=162 Identities=15% Similarity=0.218 Sum_probs=87.9
Q ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCCCCC
Q 039302 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD-LRLLKGG 360 (479)
Q Consensus 282 ~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD-lr~~~~~ 360 (479)
.+.+.++++++..+.+....++.-.+|-.+.......... ...+..-+|.+++ .+.+....+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCC-CEEEEEcCCCceEEEEecCCCcc-
Confidence 6889999999984434442334444444444332222222 3378888999997 7777666666666663 333331
Q ss_pred CceEEEeecC--CCCeEEEEEeCCCCCEEEEEe---CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 361 DSVVAHFEYH--KHPVTSIEWSPHEGSTLAVSS---ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 361 ~~~~~~~~~h--~~~I~~v~~sp~~~~~las~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
........ ...|+++.++|++ ..+|... .++.|.|=-+...... .......|..+. .
T Consensus 101 --~~~~v~~~~~~~~I~~l~vSpDG-~RvA~v~~~~~~~~v~va~V~r~~~g-------------~~~~l~~~~~~~--~ 162 (253)
T PF10647_consen 101 --EPVEVDWPGLRGRITALRVSPDG-TRVAVVVEDGGGGRVYVAGVVRDGDG-------------VPRRLTGPRRVA--P 162 (253)
T ss_pred --eeEEecccccCCceEEEEECCCC-cEEEEEEecCCCCeEEEEEEEeCCCC-------------CcceeccceEec--c
Confidence 11122221 1289999999977 5444443 3577877766544311 000001111111 1
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
.....+++++|.+... |++.+...+-.+|.
T Consensus 163 ~~~~~v~~v~W~~~~~-L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDST-LVVLGRSAGGPVVR 192 (253)
T ss_pred cccCcceeeeecCCCE-EEEEeCCCCCceeE
Confidence 2235799999999986 44444444323333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.62 Score=48.68 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=76.5
Q ss_pred eEEEEeCCC-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-------------------
Q 039302 248 RLVSGDCNS-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG------------------- 303 (479)
Q Consensus 248 ~l~sg~~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg------------------- 303 (479)
..+.|+.++ ++..||+.+ ..|.... ++.........+.. ++. +++.||.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~-~~W~~~~-~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGD-DKWKMLP-DMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCC-CeEEECC-CCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccc
Confidence 666677654 478899876 3454311 12111111112222 355 777777653
Q ss_pred ----cEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCC------CeEEEEeCCC-CCCCCceEEEeecCC
Q 039302 304 ----NIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIHDLRL-LKGGDSVVAHFEYHK 371 (479)
Q Consensus 304 ----~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iwDlr~-~~~~~~~~~~~~~h~ 371 (479)
.+..||.++.+- .+..+.........+.++ + .+.+.||.+ ..+..||..+ .+ +..+..+....
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r 503 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRL 503 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCccc
Confidence 467788776531 111111111111222232 3 677777754 2467899887 44 33444554433
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCC--cEEEEECCCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADN--QLTIWDLSLEK 405 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg--~I~iwdl~~~~ 405 (479)
.....+.+ ++.+.++||.|+ .+-.||..+.+
T Consensus 504 ~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 SALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccceeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 33333444 458999999888 66777777654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.07 E-value=2 Score=41.05 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=90.7
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCC-CCcccCCCcE-EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDP-NPFIGHAASV-EDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMS 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V-~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~ 319 (479)
|.++..|.+-+.||++.-..+...++..... ..|.....++ ..-++...+. .++--+..|.|+-.|+..... ....
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCc
Confidence 5554478888889999999887655432111 1122222222 2223443343 455577889999888887642 1111
Q ss_pred EecC----------CCCEEEEEEcCCCCcEEEEE--eCCC-------eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 320 FKAH----------NADVNVISWNRLASCLLASG--SDDG-------TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 320 ~~~h----------~~~v~~l~~~p~~~~~l~sg--s~dg-------~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+..- .+.-.-+++++..+.+++.- +.+| .|.++|+.+.+ .+..+.. ..++.+|+.+
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k----rv~Ri~l-~~~~~Si~Vs 297 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK----RVARIPL-EHPIDSIAVS 297 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE----EEEEEEE-EEEESEEEEE
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe----EEEEEeC-CCccceEEEc
Confidence 1110 12334567777653433321 1122 48888998887 6777764 3468899999
Q ss_pred CCCCCEEEEE-eCCCcEEEEECCCCC
Q 039302 381 PHEGSTLAVS-SADNQLTIWDLSLEK 405 (479)
Q Consensus 381 p~~~~~las~-s~Dg~I~iwdl~~~~ 405 (479)
.++..+|++. ..++.|.+||..+++
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 9776677665 458999999999874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.1 Score=43.65 Aligned_cols=154 Identities=11% Similarity=0.076 Sum_probs=81.5
Q ss_pred CceEEEEeCCCCCCeEEEEe------CCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC---
Q 039302 234 DEGYAIDWNPVAPGRLVSGD------CNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD--- 302 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~------~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--- 302 (479)
..+...+++|++. .++... .|. .|.+++. ++... ....+ .....-.|+|++. .+.+.+..
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~---~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPL--GGVAV---QVLEG--HSLTRPSWSLDAD-AVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeC--CCcce---eeecC--CCCCCceECCCCC-ceEEEecCcce
Confidence 4677899999998 554443 244 4444454 22211 11222 2367789999977 55555422
Q ss_pred ---------CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEE---EeCCCCCCC-CceEEEeec
Q 039302 303 ---------GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSI---HDLRLLKGG-DSVVAHFEY 369 (479)
Q Consensus 303 ---------g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~i---wDlr~~~~~-~~~~~~~~~ 369 (479)
+.+.+.++..+. ... .....|..+.|+|+| ..||.-. +|.|++ -....+... ..+......
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred EEEeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 233333443332 111 234579999999999 5444443 477766 332222100 011111222
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 370 HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 370 h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
-...+.++.|...+ . |+.+..++...+|.+...
T Consensus 495 l~~~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 495 LGDTAVSLDWRTGD-S-LVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred cCCccccceEecCC-E-EEEEecCCCCceEEEecC
Confidence 33446889999854 4 446555555556666554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.02 E-value=3.1 Score=38.95 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=86.3
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..|+.|+++| |+++++.. ...+.... +...|..|...+.-+ .|++-+ |+.+++++
T Consensus 8 ~~L~vGt~~G-l~~~~~~~--------------------~~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSD--------------------PSKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYD 62 (275)
T ss_pred CEEEEEECCC-EEEEEecC--------------------CccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEE
Confidence 5666778888 99999933 12222222 223499999998876 665555 59999999
Q ss_pred cCCCCccccCC----------CCcccCCCcEEEEE--ECCCCCcEEEEEeCCCcEEEEEcCCCC----ceeeEEecCCCC
Q 039302 263 PASDATWNVDP----------NPFIGHAASVEDLQ--WSPTESDVFASCSVDGNIAIWDTRVGK----SALMSFKAHNAD 326 (479)
Q Consensus 263 ~~~~~~~~~~~----------~~~~~h~~~V~~l~--~sp~~~~~l~s~s~dg~I~iwD~~~~~----~~~~~~~~h~~~ 326 (479)
+..-....... .........+...+ -...+. ..+.+...++|.+|...... .....+ .-...
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~ 140 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDP 140 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEE-EcCCC
Confidence 86643321100 00112233444444 122333 44445556699999887642 122333 34577
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
+.+++|.+ ..|+.|..+ ...+.|+.++.
T Consensus 141 ~~~i~~~~---~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 141 PSSIAFLG---NKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred cEEEEEeC---CEEEEEeCC-ceEEEecCCCC
Confidence 89999994 567777654 47889999765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=6.5 Score=41.24 Aligned_cols=144 Identities=15% Similarity=0.251 Sum_probs=77.3
Q ss_pred eEEEEeCCC-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC------cEEEEEcCCCCc-
Q 039302 248 RLVSGDCNS-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG------NIAIWDTRVGKS- 315 (479)
Q Consensus 248 ~l~sg~~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg------~I~iwD~~~~~~- 315 (479)
+.|+|+.|| +|-.||..+ ..|.... +.......+-.+.+ .+. +.++||.++ ++..||..+..-
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~-~~W~~va-~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVT-NKWTPVA-PMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EEEEeccccccccccEEEecCCC-CcccccC-CCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCCcee
Confidence 777888886 467788866 4444321 12111222222333 244 888888554 467888877631
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe-----EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGT-----FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~-----i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.+..+..-........++ + .+.+.||.|+. |..||.++.+ +..+..+......+..+.+ ++.+.++|
T Consensus 458 ~~~~M~~~R~~~g~a~~~--~-~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~---~~~ly~vG 529 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVLN--G-KIYVVGGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVL---GGKLYAVG 529 (571)
T ss_pred ecCCcccccccceEEEEC--C-EEEEECCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEEE---CCEEEEEe
Confidence 111111111112223333 3 78899998873 7789988776 3333333333333333333 45888888
Q ss_pred eCCCc-----EEEEECCCC
Q 039302 391 SADNQ-----LTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~-----I~iwdl~~~ 404 (479)
+.||. |-.||..+.
T Consensus 530 G~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 530 GFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccCccccceeEEcCCCCC
Confidence 87763 555655544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.1 Score=46.77 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=67.8
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc--CCCCcEEEEEeCCCeEEEEeC-----CCC
Q 039302 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN--RLASCLLASGSDDGTFSIHDL-----RLL 357 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~sgs~dg~i~iwDl-----r~~ 357 (479)
-+.-+..++ ..++-+....+.|||.+.+.-...........|..+.|. |++ +.+++.|..+.|.+|-- .+.
T Consensus 34 li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 34 LISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred eEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcC
Confidence 333444444 333344456799999998741111112346789999995 677 55555566778887753 222
Q ss_pred CCCCceEEEe--ecCC-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 358 KGGDSVVAHF--EYHK-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 358 ~~~~~~~~~~--~~h~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+...++..+ ..|+ .+|.+..|-+++ .++ +|+ ++++.|+|-...
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~Lv-V~s-GNqlfv~dk~~~ 158 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLV-VGS-GNQLFVFDKWLD 158 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCC-eEE-EEe-CCEEEEECCCcC
Confidence 2223345444 3344 689999999854 444 333 567888875444
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.53 E-value=2.3 Score=37.75 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=88.3
Q ss_pred EEEEEeCCCcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCC------CeEEEE-eCCCCCCCCceEE-
Q 039302 295 VFASCSVDGNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIH-DLRLLKGGDSVVA- 365 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iw-Dlr~~~~~~~~~~- 365 (479)
+|++ .....|.+|++..... ++..+. .-+.|..+.++..| .+|+|==.+ ..+++| +.|.......++.
T Consensus 31 Lfva-~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 31 LFVA-ASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred EEEE-cCCCEEEEEEcccCCCceeEEEc-chhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4444 5567899999994433 444444 34789999999999 788874322 145654 2222211111222
Q ss_pred EeecC---------------------CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 366 HFEYH---------------------KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 366 ~~~~h---------------------~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
.+-|| ..++.+++..|..|++++.+ ++.+.+|.+.......+ ....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~-----------~~~~ 174 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSE-----------KFSF 174 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecc-----------cccE
Confidence 22221 34678899999776666543 67899999876532100 0000
Q ss_pred CCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 425 EDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 425 ~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.+.-..++..|. .-.+..+++.. ..+|..++..+.++++.
T Consensus 175 lDFe~~l~~~~~-~~~p~~v~ic~---~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 175 LDFERSLIDHID-NFKPTQVAICE---GYIAVMSDLEVLVLKLE 214 (215)
T ss_pred Eechhhhhheec-CceEEEEEEEe---eEEEEecCCEEEEEEEe
Confidence 011112223332 23477888876 47888888878888864
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.15 Score=32.43 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=28.0
Q ss_pred CcEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCC
Q 039302 281 ASVEDLQWSPTES--DVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 281 ~~V~~l~~sp~~~--~~l~s~s~dg~I~iwD~~~~ 313 (479)
++|.++.|+|... .+|+.+-.-|.|.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998654 68998888999999999953
|
It contains a characteristic DLL sequence motif. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.14 E-value=3.4 Score=43.65 Aligned_cols=119 Identities=9% Similarity=0.026 Sum_probs=75.0
Q ss_pred ceEEEEeCCCCC-CeEEEEeCCCeEEEEecCCC------C-------c--cccCCCCcccCCCcEEEEEEC--CCCCcEE
Q 039302 235 EGYAIDWNPVAP-GRLVSGDCNSCIHLWEPASD------A-------T--WNVDPNPFIGHAASVEDLQWS--PTESDVF 296 (479)
Q Consensus 235 ~v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~------~-------~--~~~~~~~~~~h~~~V~~l~~s--p~~~~~l 296 (479)
.|+.|....-+. ..|+.|..||.|.+|.+.+- . . ..+.......-..+++.++++ ...+ ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EE
Confidence 355555444332 28999999999999976320 0 0 000011112234588999998 6666 88
Q ss_pred EEEeCCCcEEEEEcCCC--CceeeEEecCCCCEEEEEEcCCC--Cc---EEEEEeCCCeEEEEeC
Q 039302 297 ASCSVDGNIAIWDTRVG--KSALMSFKAHNADVNVISWNRLA--SC---LLASGSDDGTFSIHDL 354 (479)
Q Consensus 297 ~s~s~dg~I~iwD~~~~--~~~~~~~~~h~~~v~~l~~~p~~--~~---~l~sgs~dg~i~iwDl 354 (479)
|+++....|.||-+... +.....-..|...|-+|+|-++. +. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888866542 11111122366678999997654 22 7888899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.07 Score=56.01 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=112.7
Q ss_pred EecCCcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s 242 (479)
..+.+|.|-.++|-..+ +++. -.-|.+.||++..-...+ ..+.+.+ ...-...+.-+.|+
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~i---------------q~~l~v~~~~p~gs~~~~V~wc 189 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEI---------------QPQLEVTPITPYGSDPQLVSWC 189 (1283)
T ss_pred HhcCCCCcccccccccCChHHH---HHhhhhheeehHhhcccc---------------ccceEEeecCcCCCCcceeeec
Confidence 34667888888885533 2222 233778999987621111 0111111 11122344566777
Q ss_pred CCCCC--eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEE-----------ECCCCCcEEEEEeCCCcEEEEE
Q 039302 243 PVAPG--RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ-----------WSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 243 ~~~~~--~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~-----------~sp~~~~~l~s~s~dg~I~iwD 309 (479)
|--.+ ++..+..++.|++.++++... ..+.+|...+.+++ .+|+|. +|+.++.||.++.|-
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQ 263 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceee
Confidence 64332 777888889999888765332 22445665555544 589998 999999999988887
Q ss_pred cCCCC----ceeeEEecCCC-CEEEEEEcCCC--------CcEEEEEeC-CCeEEEEeCCCCCCCCceEEEeecCCCCeE
Q 039302 310 TRVGK----SALMSFKAHNA-DVNVISWNRLA--------SCLLASGSD-DGTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375 (479)
Q Consensus 310 ~~~~~----~~~~~~~~h~~-~v~~l~~~p~~--------~~~l~sgs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~ 375 (479)
+.-.. .++...+.|.. +-.|.-++.+. -.+++++++ +..+++|.-...++ + +......|.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C----l--l~~~~d~v~ 337 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC----L--LDKLIDGVQ 337 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh----h--hhhcccceE
Confidence 64321 14444555652 22221122211 024455554 44689998776663 3 121223333
Q ss_pred EEEEeCCCC------------CEEEEEeCCCcEEEEECCC
Q 039302 376 SIEWSPHEG------------STLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 376 ~v~~sp~~~------------~~las~s~Dg~I~iwdl~~ 403 (479)
.|. |.++ ..+++.+-++.|.+|.=+.
T Consensus 338 iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 338 IVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred eec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 333 3221 1234456678888886544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.97 E-value=7.4 Score=38.83 Aligned_cols=155 Identities=10% Similarity=0.142 Sum_probs=90.1
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC---CC-CCcEEEEEeCCCcEEEEEcCCCC----
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS---PT-ESDVFASCSVDGNIAIWDTRVGK---- 314 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s---p~-~~~~l~s~s~dg~I~iwD~~~~~---- 314 (479)
+++...|++|+..|.++||++...+.......--..-..+|..|..- +. +.+.||+ =.-+.+.||.+....
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 44445999999999999999955432111011011224577777653 22 2223433 446778888874321
Q ss_pred ----ceeeEEecCC--CCEEEEEEcCCC----CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 315 ----SALMSFKAHN--ADVNVISWNRLA----SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 315 ----~~~~~~~~h~--~~v~~l~~~p~~----~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
..+.....|. .....+++-|.| ..+|.+-+.||.+.+|+-.... ....+.. ---...+.+.|..
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----f~~~lp~-~llPgPl~Y~~~t- 186 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----FSRFLPD-FLLPGPLCYCPRT- 186 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----EEEEcCC-CCCCcCeEEeecC-
Confidence 0122222232 233444444433 3689999999999999987644 2222322 1112346777754
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q 039302 385 STLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~ 404 (479)
..|++++.+..|..|.....
T Consensus 187 Dsfvt~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKYQDL 206 (418)
T ss_pred CEEEEecCceeEEEecHHHh
Confidence 78889988999999887543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.92 E-value=7.3 Score=38.60 Aligned_cols=203 Identities=11% Similarity=0.002 Sum_probs=87.4
Q ss_pred CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---CC----CceEEEEeCCCCCCeEEEE--
Q 039302 182 PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG---HK----DEGYAIDWNPVAPGRLVSG-- 252 (479)
Q Consensus 182 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~l~~s~~~~~~l~sg-- 252 (479)
..|++-|-.++.|+|+|+.+....... ..++.. +. ..-..+..-|++. .++|+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l-----------------~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lG 149 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRL-----------------HKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALG 149 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EE-----------------EEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCce-----------------EeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEecc
Confidence 466777668999999999875433321 111110 00 1112233345554 66664
Q ss_pred eC----CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC--------------------CCcEEEE
Q 039302 253 DC----NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--------------------DGNIAIW 308 (479)
Q Consensus 253 ~~----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--------------------dg~I~iw 308 (479)
+. -|.+.+.|-.+......- ..-.+....-.++-|.|..+ +++|... -.++.+|
T Consensus 150 d~~G~g~Ggf~llD~~tf~v~g~W-e~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vW 227 (461)
T PF05694_consen 150 DADGNGPGGFVLLDGETFEVKGRW-EKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVW 227 (461)
T ss_dssp ETTS-S--EEEEE-TTT--EEEE---SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEE
T ss_pred CCCCCCCCcEEEEcCcccccccee-ccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEE
Confidence 22 235666665542221100 00011123456788888776 7777632 4579999
Q ss_pred EcCCCCceeeEEecCCC--CEEEEEE--cCCCCcEEEEEeCCCeEEEEeC-CCCCCCCceEEEeec--------------
Q 039302 309 DTRVGKSALMSFKAHNA--DVNVISW--NRLASCLLASGSDDGTFSIHDL-RLLKGGDSVVAHFEY-------------- 369 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~--~v~~l~~--~p~~~~~l~sgs~dg~i~iwDl-r~~~~~~~~~~~~~~-------------- 369 (479)
|+.+.+ .++++.-... ...-|.| +|....=++.+.-.++|..|-. ..+.-....+..+..
T Consensus 228 D~~~r~-~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 228 DWSTRK-LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp ETTTTE-EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred ECCCCc-EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence 999875 6666654332 2344555 4555344555555556655543 322210112222221
Q ss_pred ---CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 370 ---HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 370 ---h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
-..-|+.|..|.++..+.+++=.+|.|+.||++...
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 124479999999884444555569999999998764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.9 Score=43.04 Aligned_cols=142 Identities=12% Similarity=0.081 Sum_probs=80.6
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-------cEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-------DVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
++..|..-..++--|+..+... ..+.-|.. | -++|.|... ..|+ |-.+..|.-.|.|.....+...
T Consensus 482 i~~dg~~~~kLykmDIErGkvv----eeW~~~dd-v-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVV----EEWDLKDD-V-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred EEecCCCcccceeeecccceee----eEeecCCc-c-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 3444555556666666654331 22223332 2 466666532 1343 4445556666877654222221
Q ss_pred e----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 321 K----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 321 ~----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
. ......++..-... .++|+||..|-|++||.-... .-..+.+-...|-.|..+.++..+|||| ...+
T Consensus 555 esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvta~Gk~ilaTC--k~yl 626 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVTANGKHILATC--KNYL 626 (776)
T ss_pred eehhccccccccccccccC--ceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEeecCCcEEEEee--cceE
Confidence 1 11223333333333 489999999999999965443 3445667788899999998774455554 4567
Q ss_pred EEEECCCC
Q 039302 397 TIWDLSLE 404 (479)
Q Consensus 397 ~iwdl~~~ 404 (479)
.+-|++..
T Consensus 627 lL~d~~ik 634 (776)
T COG5167 627 LLTDVPIK 634 (776)
T ss_pred EEEecccc
Confidence 78887653
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.93 Score=45.20 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=51.2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC-----CCceEEEee-----------cCCCCeEEEEEeCCC--CCEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG-----GDSVVAHFE-----------YHKHPVTSIEWSPHE--GSTL 387 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~-----~~~~~~~~~-----------~h~~~I~~v~~sp~~--~~~l 387 (479)
.|..+..++.| ..++-.|.+|.+.++=.+.... .+.++...+ ...-.+..++|+|+. ...|
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 46778889999 6677777788766654332221 011111111 112245678999976 6788
Q ss_pred EEEeCCCcEEEEECCCCC
Q 039302 388 AVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~ 405 (479)
..-+.|+.|++||++...
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 888999999999998764
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.6 Score=46.79 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=52.7
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC-C-----CCc--eEEEe--------ecCCCCeEEEEEeCCC--CCE
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK-G-----GDS--VVAHF--------EYHKHPVTSIEWSPHE--GST 386 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~-~-----~~~--~~~~~--------~~h~~~I~~v~~sp~~--~~~ 386 (479)
-.|..|.+||.| .+||..|..|.+.+.=.+... . ... ..+++ ..+...|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 468899999999 777777776644333222211 0 000 11111 1245678999999964 578
Q ss_pred EEEEeCCCcEEEEECCCCC
Q 039302 387 LAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~ 405 (479)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999998654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.76 Score=45.19 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=55.9
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEEeCCC--CCCeEEEEeCCCeEEEEecCCC
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAIDWNPV--APGRLVSGDCNSCIHLWEPASD 266 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~ 266 (479)
..++++||+.. .++++++.--.. ....+.|..+ ...-++.+....+|..|--...
T Consensus 221 G~~l~vWD~~~---------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 221 GHSLHVWDWST---------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp --EEEEEETTT---------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred cCeEEEEECCC---------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 46799999998 566666654322 3455666544 3323555555667766655343
Q ss_pred CccccCC------------------CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 267 ATWNVDP------------------NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 267 ~~~~~~~------------------~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+.|.... +.+..-..-|++|..|.+++.+.+++-..|.|+.||+.....+..
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 4432210 111112356899999999998888888999999999998765443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.3 Score=31.08 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCC--cEEEEEeCCCeEEEEeCCC
Q 039302 326 DVNVISWNRLAS--CLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 326 ~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr~ 356 (479)
.|.++.|+|... .+|+..-.-|.|.|+|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998774 6899988999999999995
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.8 Score=42.91 Aligned_cols=123 Identities=11% Similarity=0.189 Sum_probs=70.2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCC-CCCEEEEEeCCCcEEEEECCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPH-EGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~-~~~~las~s~Dg~I~iwdl~~ 403 (479)
...-+.-+..+ ..-++.+....+.|||.+... ....-. ...+.|.++.|... ++..+.+.|-.+.|.+|--..
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence 33444444434 444444445589999998776 222221 35789999999542 346777778888998886533
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
..- ....+.-.+...+-..... .+|.+..|.++| .++.++++.+.|+.-+
T Consensus 106 ~dy-------------~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 106 YDY-------------TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGSGNQLFVFDKW 156 (631)
T ss_pred hhh-------------hcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEeCCEEEEECCC
Confidence 210 0111112233333232222 269999999997 4555555656776543
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=7.2 Score=36.35 Aligned_cols=167 Identities=13% Similarity=0.150 Sum_probs=103.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~ 245 (479)
+-...|.++.|+|+...++++....-. |-.+.. .++.+.++.-. -..--++.|...+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~--iVElt~--------------------~GdlirtiPL~g~~DpE~Ieyig~n 140 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAA--IVELTK--------------------EGDLIRTIPLTGFSDPETIEYIGGN 140 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCce--EEEEec--------------------CCceEEEecccccCChhHeEEecCC
Confidence 455669999999999888877544332 333333 24444443221 1133467777666
Q ss_pred CCeEEEEeCCCeEEEEecCCCCcc------ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee-
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATW------NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM- 318 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~------~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~- 318 (479)
. +.++--.++.+.++.+...... .+........+.....++|.|.+. .|..+-+-.-+.||.+......+.
T Consensus 141 ~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 141 Q-FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred E-EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCccccc
Confidence 5 5555566788888877654321 111122222266788999999988 677777777888887765431111
Q ss_pred -EEecC-------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 319 -SFKAH-------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 319 -~~~~h-------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
....+ -..|.++.|++..+++|+-+..++.+.-.|+.-.
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 11111 2357888999887788888888888888887643
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.09 E-value=9 Score=37.12 Aligned_cols=253 Identities=15% Similarity=0.122 Sum_probs=114.8
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC--CCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV--APG 247 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~ 247 (479)
.-+.|+|.|++ .++++ ...|.|++++..... .... ... ............++++|+ .++
T Consensus 3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~~~g~~~~~v~--------------~~~--~v~~~~~~gllgia~~p~f~~n~ 64 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLVA-ERSGRIWVVDKDGSLKTPVA--------------DLP--EVFADGERGLLGIAFHPDFASNG 64 (331)
T ss_dssp SEEEEEEETTS-CEEEE-ETTTEEEEEETTTEECEEEE--------------E-T--TTBTSTTBSEEEEEE-TTCCCC-
T ss_pred CceEEEEeCCC-cEEEE-eCCceEEEEeCCCcCcceec--------------ccc--cccccccCCcccceeccccCCCC
Confidence 35789999998 67766 669999999933311 0000 000 012233447789999995 112
Q ss_pred eEEEEeC-C--------CeEEEEecCCCCc----cccCCC--Cc-ccCCCcEEEEEECCCCCcEEEEEeCCCc-------
Q 039302 248 RLVSGDC-N--------SCIHLWEPASDAT----WNVDPN--PF-IGHAASVEDLQWSPTESDVFASCSVDGN------- 304 (479)
Q Consensus 248 ~l~sg~~-d--------g~I~lwd~~~~~~----~~~~~~--~~-~~h~~~V~~l~~sp~~~~~l~s~s~dg~------- 304 (479)
+|..... . ..|.-|....... ...... .. ......-..|.|.|++. ++++.+..+.
T Consensus 65 ~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~ 143 (331)
T PF07995_consen 65 YLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDP 143 (331)
T ss_dssp EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCST
T ss_pred EEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCccccccc
Confidence 3333332 1 2344444433211 000000 01 11223456699999997 6666554332
Q ss_pred ------EEEEEcCCCC---c--------eeeEE-ecCCCCEEEEEEcCCCCcEEEE-EeCCCeEEEEeCCCCCC------
Q 039302 305 ------IAIWDTRVGK---S--------ALMSF-KAHNADVNVISWNRLASCLLAS-GSDDGTFSIHDLRLLKG------ 359 (479)
Q Consensus 305 ------I~iwD~~~~~---~--------~~~~~-~~h~~~v~~l~~~p~~~~~l~s-gs~dg~i~iwDlr~~~~------ 359 (479)
|.-.+....- . ....+ .++. ....++|+|..+.++++ -+.++.=.|--++.+..
T Consensus 144 ~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~ 222 (331)
T PF07995_consen 144 NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYC 222 (331)
T ss_dssp TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTB
T ss_pred ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCC
Confidence 2222322110 0 00111 2222 24678999983255543 23333222222222110
Q ss_pred -------------------CCceEEEeecCCCCeEEEEEeCC------CCCEEEEEeCCCcEEEEECCCCCChHHHHHHh
Q 039302 360 -------------------GDSVVAHFEYHKHPVTSIEWSPH------EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFK 414 (479)
Q Consensus 360 -------------------~~~~~~~~~~h~~~I~~v~~sp~------~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~ 414 (479)
...|+..+..| ..++.+.|... .+.+|++.-..+.|....+......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~------- 294 (331)
T PF07995_consen 223 EGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV------- 294 (331)
T ss_dssp SSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-------
T ss_pred cCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-------
Confidence 01255556554 56677777642 2245666555667777777543210
Q ss_pred hhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 415 AKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 415 ~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
..+..+.......+.+|++.|++. |.++...+| .|||
T Consensus 295 -------------~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G-~iyR 331 (331)
T PF07995_consen 295 -------------TEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDG-KIYR 331 (331)
T ss_dssp -------------EEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTT-TEEE
T ss_pred -------------cceEEccccCCCCceEEEEcCCCe-EEEEECCCC-eEeC
Confidence 001112222222699999999996 555555554 5554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.045 Score=57.39 Aligned_cols=174 Identities=12% Similarity=0.095 Sum_probs=94.9
Q ss_pred CceeEEEE-ecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC
Q 039302 158 TPILQLRK-VAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 158 ~p~~~~~~-~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
.|.+.+.. .+-...+..|.|+|-- .-.+..+-.+|.|++..++.... ..+.+|+.
T Consensus 168 q~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----------------------~l~rsHs~ 225 (1283)
T KOG1916|consen 168 QPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----------------------SLFRSHSQ 225 (1283)
T ss_pred ccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH----------------------HHHHhcCC
Confidence 34444333 2334556778888743 35677778889999988877432 22334554
Q ss_pred ceEEEE-----------eCCCCCCeEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC-CcEEEEEECCCCC--------
Q 039302 235 EGYAID-----------WNPVAPGRLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA-ASVEDLQWSPTES-------- 293 (479)
Q Consensus 235 ~v~~l~-----------~s~~~~~~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~-~~V~~l~~sp~~~-------- 293 (479)
.+..++ .+|+|. .|+.+..||.+++|.+.-.+. ........+.|. .+-.|.-|+.+..
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w 304 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW 304 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee
Confidence 444433 588887 888888899988888754332 111123344555 2322322443321
Q ss_pred cEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCC-----------cEEEEEeCCCeEEEEeCCCCC
Q 039302 294 DVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLAS-----------CLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 294 ~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~-----------~~l~sgs~dg~i~iwDlr~~~ 358 (479)
.++++++ .+..+++|.....+ |+. ...-..|+.+. -+++. ..+++-+-++.|++|--+.-.
T Consensus 305 ~~~Itttd~nre~k~w~~a~w~-Cll--~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~ 377 (1283)
T KOG1916|consen 305 VLRITTTDVNREEKFWAEAPWQ-CLL--DKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQ 377 (1283)
T ss_pred EEEEecccCCcceeEeeccchh-hhh--hhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhh
Confidence 0233333 45668888776554 331 11223344444 22221 124556778889998766543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=8.7 Score=37.28 Aligned_cols=155 Identities=13% Similarity=0.162 Sum_probs=84.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEE-EeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQV-WDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
.+.++.+.+.|++ .++++ +..|.+.. ++-.. . ....+ ...-...++++.+.+++.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s~~~gg--~-----------------tW~~~--~~~~~~~l~~i~~~~~g~- 227 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYSTWEPGQ--T-----------------AWTPH--QRNSSRRLQSMGFQPDGN- 227 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEEcCCCC--C-----------------eEEEe--eCCCcccceeeeEcCCCC-
Confidence 4678899999987 56666 45565543 22111 0 01111 112335789999999876
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE---ecCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---KAHN 324 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---~~h~ 324 (479)
.++.| ..|.+++=....+..|.....+.......+.++.+.|++. ++ .++.+|.|.. ....++ .-... ..-.
T Consensus 228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~~-S~d~G~-tW~~~~~~~~~~ 302 (334)
T PRK13684 228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLLV-SKDGGK-TWEKDPVGEEVP 302 (334)
T ss_pred EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEEE-eCCCCC-CCeECCcCCCCC
Confidence 55554 4677654333444445422222111234578899999776 44 4555776553 333332 11111 1222
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
...+.+.|...+ ..++ .+..|.|..|+-
T Consensus 303 ~~~~~~~~~~~~-~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 303 SNFYKIVFLDPE-KGFV-LGQRGVLLRYVG 330 (334)
T ss_pred cceEEEEEeCCC-ceEE-ECCCceEEEecC
Confidence 357778877665 5555 456788877653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.49 E-value=8.9 Score=35.58 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=105.4
Q ss_pred EEecCCCcEEEEEe----CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 176 RAMSQNPHICASWA----DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 176 ~~~p~~~~~lat~s----~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
.|+|+|..+.||=. .-|.|-|||... ..+.+-.+..|.-.-..|.|.+++. .|+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~--------------------~fqrvgE~~t~GiGpHev~lm~DGr-tlvv 178 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDARE--------------------GFQRVGEFSTHGIGPHEVTLMADGR-TLVV 178 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccc--------------------ccceecccccCCcCcceeEEecCCc-EEEE
Confidence 68999966666532 237899999986 2455566777777777899999997 5555
Q ss_pred EeCCCeEEEE--------------------ecCCCCccccCCCCcc--cCCCcEEEEEECCCCCcEEEEEeCCCc-----
Q 039302 252 GDCNSCIHLW--------------------EPASDATWNVDPNPFI--GHAASVEDLQWSPTESDVFASCSVDGN----- 304 (479)
Q Consensus 252 g~~dg~I~lw--------------------d~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~dg~----- 304 (479)
+. |-|..- |..++.... +..+. -+.-+|..+...+++. +.+.|-..|.
T Consensus 179 an--GGIethpdfgR~~lNldsMePSlvlld~atG~lie--kh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~p 253 (366)
T COG3490 179 AN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE--KHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLP 253 (366)
T ss_pred eC--CceecccccCccccchhhcCccEEEEeccccchhh--hccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCC
Confidence 43 334333 222221111 11121 2345677788888777 5544432221
Q ss_pred EEEEEcCCCCceeeEE-------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 305 IAIWDTRVGKSALMSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
-.+=-.+.++ ++..+ ......|-+|+.+.......+|.-..+...+||..++. .+..-. -.....|
T Consensus 254 pLvg~~~~g~-~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~----vv~~a~--l~daaGv 326 (366)
T COG3490 254 PLVGHFRKGE-PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA----VVSEAA--LPDAAGV 326 (366)
T ss_pred cceeeccCCC-cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc----EEeccc--ccccccc
Confidence 1111111111 22211 12234677888887774566666666788899999987 333211 1112223
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEE
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.-. . .-|+..+.+|.|.++.
T Consensus 327 a~~--~-~gf~vssg~G~~~~~s 346 (366)
T COG3490 327 AAA--K-GGFAVSSGQGRIIFYS 346 (366)
T ss_pred eec--c-CceEEecCCceEEecc
Confidence 332 2 4467777788888874
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.49 E-value=18 Score=39.00 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=55.2
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC--------ccc-------cCCCCc-ccCCCcEEEEEECCCC--CcE
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA--------TWN-------VDPNPF-IGHAASVEDLQWSPTE--SDV 295 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~--------~~~-------~~~~~~-~~h~~~V~~l~~sp~~--~~~ 295 (479)
-+|..+..||+|. .|+..+..|.+.+.=.+..+ ... +....+ ..+...|..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4899999999998 77777766544333222110 000 001111 2345689999999985 347
Q ss_pred EEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 296 FASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 296 l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|++-..|++||+||+.....+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 8888889999999998765554443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.35 E-value=5 Score=38.45 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=85.4
Q ss_pred ecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE-EEEeCCCCCCeEEEEeCCC
Q 039302 178 MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY-AIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 178 ~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~~l~sg~~dg 256 (479)
.|.++.-+.+-+.||.+.-..+....+.... ....|..-..+++ .-++...+. .++--+..|
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~----------------~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G 205 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQK----------------STKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEG 205 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEE----------------EEEESSTTTS-B-S--EEETTTT-EEEEEBTTS
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEe----------------eccccCCCCcccccccceECCCC-eEEEEecCC
Confidence 3444445667788999998888863222100 0011111122222 222333332 555566677
Q ss_pred eEEEEecCCCCccccCCCC-cc-----c--CCCcEEEEEECCCCCcEEEEEe--CCC-------cEEEEEcCCCCceeeE
Q 039302 257 CIHLWEPASDATWNVDPNP-FI-----G--HAASVEDLQWSPTESDVFASCS--VDG-------NIAIWDTRVGKSALMS 319 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~-~~-----~--h~~~V~~l~~sp~~~~~l~s~s--~dg-------~I~iwD~~~~~~~~~~ 319 (479)
.|+--++............ +. . -.+.-.-+++++..+.+++.-. .+| .|-++|+.+.+ .+..
T Consensus 206 ~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-rv~R 284 (342)
T PF06433_consen 206 NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-RVAR 284 (342)
T ss_dssp EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-EEEE
T ss_pred EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe-EEEE
Confidence 7777776543211000000 00 0 0122334677765553443321 111 37777888875 4555
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 320 FKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sg-s~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
+.. ...+.+|+.+.+...+|.+. ..++.+.+||..+++ .+.++..
T Consensus 285 i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk----~~~~~~~ 330 (342)
T PF06433_consen 285 IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK----LVRSIEQ 330 (342)
T ss_dssp EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT------EEEEE--
T ss_pred EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc----EEeehhc
Confidence 442 23577999999886677654 568999999999988 7777764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.34 E-value=4.9 Score=39.58 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=74.2
Q ss_pred ceEEEEeCCCCCCeEEEEe-----------CCC-eEEEEecCCC-CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 235 EGYAIDWNPVAPGRLVSGD-----------CNS-CIHLWEPASD-ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~-----------~dg-~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
...+|+|.+++. ++++-. ..+ .|.+++-..+ +... ....+.......+.|++.+++ ++++ +.
T Consensus 15 ~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEELSMVTGLAVAVGG--VYVA-TP 89 (367)
T ss_pred CCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCCCCccceeEecCC--EEEe-CC
Confidence 456789988876 444432 223 7777764332 2211 011222223356788998876 5554 33
Q ss_pred CCcEEEEEcCCC-----C-ceee-EEec----CCCCEEEEEEcCCCCcEEEEEeCC-------------------CeEEE
Q 039302 302 DGNIAIWDTRVG-----K-SALM-SFKA----HNADVNVISWNRLASCLLASGSDD-------------------GTFSI 351 (479)
Q Consensus 302 dg~I~iwD~~~~-----~-~~~~-~~~~----h~~~v~~l~~~p~~~~~l~sgs~d-------------------g~i~i 351 (479)
...+++.|.... + ..+. .+.. +....+.+.|.|++ .+.++-+.. |.|.-
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 443344455321 1 1111 1221 23457899999998 555544421 33444
Q ss_pred EeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
+|..... +..+...-.....++|+|.+ .++++-..+
T Consensus 169 ~~pdg~~-----~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGK-----LRVVAHGFQNPYGHSVDSWG-DVFFCDNDD 204 (367)
T ss_pred EecCCCe-----EEEEecCcCCCccceECCCC-CEEEEccCC
Confidence 4444332 22222222334689999954 777664433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.32 E-value=12 Score=36.78 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc----cccCCCCccc----CCCcEEEEEECCCCCcEEEEEeCC--
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT----WNVDPNPFIG----HAASVEDLQWSPTESDVFASCSVD-- 302 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~----~~~~~~~~~~----h~~~V~~l~~sp~~~~~l~s~s~d-- 302 (479)
......|++.+++ ++++ +.....++.+...... ..+....+.. +....+.++|.|++. +.++.+..
T Consensus 71 l~~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~ 146 (367)
T TIGR02604 71 LSMVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLA 146 (367)
T ss_pred CCCccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCC
Confidence 3355788888765 4443 4333333435432211 1111111211 234578899999998 55544311
Q ss_pred -----------------CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 303 -----------------GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 303 -----------------g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
|.|.-++..... ...+...-...+.++|++.+ .++++-..+
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~--~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~ 204 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGK--LRVVAHGFQNPYGHSVDSWG-DVFFCDNDD 204 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCe--EEEEecCcCCCccceECCCC-CEEEEccCC
Confidence 334444444432 22222222345789999988 676664433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.27 E-value=5.4 Score=38.97 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=76.7
Q ss_pred EECCCCCcEEEEEeCCCc--EEEEEcCCCCceeeEEecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 287 QWSPTESDVFASCSVDGN--IAIWDTRVGKSALMSFKAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 287 ~~sp~~~~~l~s~s~dg~--I~iwD~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
+|.++|+.+|.++..||. +.+.|+.++. +..+.... .......++|.+ ..|+-......|+-.|+++.+ .
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e----~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLE----E 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT------E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCc----E
Confidence 688889866666666665 5566777764 44443332 112245667877 555545555788999999987 3
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCCChHHHHHHhhh-cccc--cCCCCCCCCceEEeecCCC
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSA-DNQLTIWDLSLEKDEEEEAEFKAK-TREQ--VNAPEDLPPQLLFIHQGQK 439 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~-Dg~I~iwdl~~~~~~~~~~~~~~~-~~~~--~~~~~~~p~~l~~~h~g~~ 439 (479)
...+......+-...|..+....++.+.. ... |............+-.+ .... ...... .+...++.-..
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~----d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~~ 188 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE----DWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDTD 188 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG----G-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeeh----hccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecCc
Confidence 44455556666667775432233333321 000 00000011111111000 0000 000111 12333333334
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC---c--eEEeee
Q 039302 440 DLKELHWHTQVPGMIVSTAADG---F--NILMPS 468 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg---i--~iw~~~ 468 (479)
.+..+.|+|..|.+|+-|-++. | +||-+.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 6889999999999999988765 4 788664
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=5.8 Score=41.31 Aligned_cols=144 Identities=10% Similarity=0.154 Sum_probs=68.2
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCce
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD------GNIAIWDTRVGKSA 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d------g~I~iwD~~~~~~~ 316 (479)
.++.|+.+ ..+..||+.+ ..|.... .+.........+.. ++. +++.||.+ ..+..||..+..-.
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~-~lp~~r~~~~~~~~--~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGE-SKWREEP-PLIFPRYNPCVVNV--NNL-IYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCC-CceeeCC-CcCcCCccceEEEE--CCE-EEEECCcCCCCcccceEEEEeCCCCeee
Confidence 66667654 3577788866 3444211 11111111111222 344 77777732 45788998765311
Q ss_pred -eeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--------eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 317 -LMSFKAHNADVNVISWNRLASCLLASGSDDG--------TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 317 -~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--------~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+..+.........+.. ++ .+++.||.++ .+.+||..+.+ +..+..+.........+.+ ++.++
T Consensus 420 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~---~~~iy 491 (534)
T PHA03098 420 KGSPLPISHYGGCAIYH--DG-KIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF---NNKIY 491 (534)
T ss_pred ecCCCCccccCceEEEE--CC-EEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE---CCEEE
Confidence 1111111111122222 23 6777776532 38889988764 2222222111111122222 34777
Q ss_pred EEEeCC-----CcEEEEECCCC
Q 039302 388 AVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~D-----g~I~iwdl~~~ 404 (479)
+.||.+ +.|.+||....
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCC
Confidence 777764 46778887765
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=91.95 E-value=15 Score=36.79 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=101.5
Q ss_pred ceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 171 CVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 171 ~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
....+++-|-| ..+|+.-+-||.+.+|+-+... ....+.+ -----.+.+++...
T Consensus 130 ~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~---------------------f~~~lp~-~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 130 TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA---------------------FSRFLPD-FLLPGPLCYCPRTD 187 (418)
T ss_pred ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE---------------------EEEEcCC-CCCCcCeEEeecCC
Confidence 34444444433 4788888999999999977621 1111221 11122467777776
Q ss_pred CeEEEEeCCCeEEEEecCCCCcccc-------------CCCCcc-----cCCCcEEEE---EECCCCCcEEEEEeCCCcE
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNV-------------DPNPFI-----GHAASVEDL---QWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~-------------~~~~~~-----~h~~~V~~l---~~sp~~~~~l~s~s~dg~I 305 (479)
.|++++.+..|..|....-..... ..+.+. .-...+.+| .++.....+++-| ..++
T Consensus 188 -sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~L 264 (418)
T PF14727_consen 188 -SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERSL 264 (418)
T ss_pred -EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cceE
Confidence 888888888888887532110000 000000 011233333 3333333233333 2445
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEE-------EcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe--EE
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVIS-------WNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV--TS 376 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~-------~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I--~~ 376 (479)
.+.+-.. . +...+.......|++ ..+.....++.++.++++.||.-.+.. -.-.....|| .-
T Consensus 265 f~l~~~G-~--l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~------WsA~l~~~PVal~v 335 (418)
T PF14727_consen 265 FCLKDNG-S--LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV------WSAQLPHVPVALSV 335 (418)
T ss_pred EEEcCCC-e--EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE------EecCCCCCCEEEEe
Confidence 5554432 1 222221222212211 122322358889999999998654432 2222222333 22
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..|.. -..+|++-+.+|.+.+-=|.+..
T Consensus 336 ~~~~~-~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 336 ANFNG-LKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred cccCC-CCceEEEEcCCCcEEEEEeCCCC
Confidence 22333 34789999999999998877653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=91.78 E-value=11 Score=34.98 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=83.8
Q ss_pred ceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 171 CVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.+...++++++..+.+... ....++++.... .....+.+ ..+..-.|.+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----------------------~~~~~~~g--~~l~~PS~d~~g~-~ 79 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----------------------PVRPVLTG--GSLTRPSWDPDGW-V 79 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----------------------cceeeccC--CccccccccCCCC-E
Confidence 6888999999966666652 334455554433 11122222 2677888999965 5
Q ss_pred EEEEeCCCeEEEEe-cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcEEEEEcCCCC-c-------ee
Q 039302 249 LVSGDCNSCIHLWE-PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNIAIWDTRVGK-S-------AL 317 (479)
Q Consensus 249 l~sg~~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I~iwD~~~~~-~-------~~ 317 (479)
.+....+...+++. ...+...... .....-...|..+.++|+|..+.+.. ..++.|.+--+.... . +.
T Consensus 80 W~v~~~~~~~~~~~~~~~g~~~~~~-v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 80 WTVDDGSGGVRVVRDSASGTGEPVE-VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred EEEEcCCCceEEEEecCCCcceeEE-ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 55556566666664 2222221110 11111122899999999999443333 235677776543221 1 11
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDG 347 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg 347 (479)
.........+..++|.+++ .+++.+...+
T Consensus 159 ~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~ 187 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDS-TLVVLGRSAG 187 (253)
T ss_pred EecccccCcceeeeecCCC-EEEEEeCCCC
Confidence 1122335678999999998 5555554443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.74 E-value=20 Score=37.89 Aligned_cols=169 Identities=14% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+.++.-...++..|.|+.+. .|+.-..+|++++|++........ ...+......|..+.|..+|- ++ -..+|
T Consensus 74 ~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~GV--av-lt~~g 147 (829)
T KOG2280|consen 74 QLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNGV--AV-LTVSG 147 (829)
T ss_pred cchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCce--EE-EecCC
Confidence 4444443334488899999877 577788899999999854322110 011122233354455444442 22 23344
Q ss_pred cEE-EEEcCCCCceeeEEec-CCCCEEEEEEc---CCC-CcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 304 NIA-IWDTRVGKSALMSFKA-HNADVNVISWN---RLA-SCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 304 ~I~-iwD~~~~~~~~~~~~~-h~~~v~~l~~~---p~~-~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
.+. +-+..... ..++.. ......+.+|. |.. ...|+--. ..+ ..++-...... ....+......+..
T Consensus 148 ~v~~i~~~~~~~--~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~---q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 148 QVILINGVEEPK--LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV---QLHALSWPNSSVVK 221 (829)
T ss_pred cEEEEcCCCcch--hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc---cccccCCCCceEEE
Confidence 443 43333321 111111 11111112332 211 11121111 111 12222222221 22333333466788
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+..||+. .+||-=...|.|.+-+....+
T Consensus 222 i~VS~n~-~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 222 ISVSPNR-RFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred EEEcCCc-ceEEEEecCCcEEEEecchhh
Confidence 8999955 888888899999888776653
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=6 Score=41.46 Aligned_cols=94 Identities=7% Similarity=0.179 Sum_probs=50.2
Q ss_pred eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC------CcEEEEEcCC-CC-ceeeEEecCCCCEE
Q 039302 257 CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD------GNIAIWDTRV-GK-SALMSFKAHNADVN 328 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d------g~I~iwD~~~-~~-~~~~~~~~h~~~v~ 328 (479)
.+..||+.+ ..|.... ++.........+.+ ++. +++.|+.+ ..+..||..+ .+ ..+..+........
T Consensus 433 ~ve~YDP~t-d~W~~v~-~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVN-NIWETLP-NFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCC-CeEeecC-CCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 577888876 3454321 22111111111222 244 77777754 2467899887 32 12222222222333
Q ss_pred EEEEcCCCCcEEEEEeCCC--eEEEEeCCCCC
Q 039302 329 VISWNRLASCLLASGSDDG--TFSIHDLRLLK 358 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~ 358 (479)
.+.+ ++ .+.++||.+| .+..||..+.+
T Consensus 508 ~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE--CC-EEEEEeeecceeehhhcCccccc
Confidence 3333 23 8999999998 77888887766
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=91.64 E-value=18 Score=37.22 Aligned_cols=146 Identities=15% Similarity=0.251 Sum_probs=78.2
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC---CcEE-EEEECCCCCcEEEEEe---------CCCcEEEEEcCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA---ASVE-DLQWSPTESDVFASCS---------VDGNIAIWDTRVG 313 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~---~~V~-~l~~sp~~~~~l~s~s---------~dg~I~iwD~~~~ 313 (479)
+++.++.+|.|+.+|..+++. |... ...+. ..+. ...+. +. +++.++ .+|.|..+|..++
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~---~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFG---NNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeec---CCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCC
Confidence 788888899999999988654 2211 11110 0010 11111 12 444443 3678899999888
Q ss_pred CceeeEEecCCCC--------------------E-EEEEEcCCCCcEEEEEeCCC------------------eEEEEeC
Q 039302 314 KSALMSFKAHNAD--------------------V-NVISWNRLASCLLASGSDDG------------------TFSIHDL 354 (479)
Q Consensus 314 ~~~~~~~~~h~~~--------------------v-~~l~~~p~~~~~l~sgs~dg------------------~i~iwDl 354 (479)
+ .+-.+...... + ...++.+.+ .+++.++.++ .|.-+|+
T Consensus 186 ~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 186 K-LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred c-eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 6 33333221110 0 123334444 5666676555 6888899
Q ss_pred CCCCCCCceEEEeec--CCC----CeEEEEEe---CCCC---CEEEEEeCCCcEEEEECCCCC
Q 039302 355 RLLKGGDSVVAHFEY--HKH----PVTSIEWS---PHEG---STLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 355 r~~~~~~~~~~~~~~--h~~----~I~~v~~s---p~~~---~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+++ .+-.+.. |.. ......+. ..++ .+++.++.+|.+...|..+++
T Consensus 264 ~tG~----~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 264 DTGK----VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CCCC----EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 8887 4444432 211 00011111 1122 257778889999888888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.46 E-value=8.2 Score=34.76 Aligned_cols=103 Identities=14% Similarity=0.223 Sum_probs=67.4
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEE--cCCCC----ceeeEEecC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 283 VEDLQWSPTESDVFASCSVDGNIAIWD--TRVGK----SALMSFKAH----NADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 283 V~~l~~sp~~~~~l~s~s~dg~I~iwD--~~~~~----~~~~~~~~h----~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
-+.++|+.+.+.+..+-+.+-+|.-|| ..++. ..+..++.. .-.--.++....| ++.++.-..|+|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEE
Confidence 357888877776666777777887777 44432 122222110 0111233445556 788888888999999
Q ss_pred eCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 353 DLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 353 Dlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
|..+++ .+..+.-....|+|++|--.+-..|.+.
T Consensus 239 dp~tGK----~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 239 DPTTGK----ILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCCCCc----EEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 999998 7888888899999999964322344443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.7 Score=37.70 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=27.1
Q ss_pred CCeEEEEEeCCC-----CCEEEEEeCCCcEEEEECCC
Q 039302 372 HPVTSIEWSPHE-----GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 372 ~~I~~v~~sp~~-----~~~las~s~Dg~I~iwdl~~ 403 (479)
..|.+++|||.+ +.+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 46899999999999998774
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.57 E-value=30 Score=37.81 Aligned_cols=198 Identities=11% Similarity=0.045 Sum_probs=99.8
Q ss_pred CCcceeEEEEecC--CCc---EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEE
Q 039302 168 HQGCVNRIRAMSQ--NPH---ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAID 240 (479)
Q Consensus 168 H~~~V~~v~~~p~--~~~---~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~ 240 (479)
...+|.|+.++|- +++ ++|.|..+..+.+--....... .....+.+. ...|.-..
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~------------------~~~~~l~~~~iPRSIl~~~ 590 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL------------------ITHEQLSGEIIPRSILLTT 590 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce------------------eeeeccCCCccchheeeEE
Confidence 3578999999986 344 8888887776665443331100 000001111 12344444
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+-.+.. +|+++..||.+.-+.+..........+...--+.++.=-.|+..+++.++++| |.-..+|-.+.. -....+
T Consensus 591 ~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~k-Lv~spl 667 (1096)
T KOG1897|consen 591 FEGDIH-YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNGK-LVYSPL 667 (1096)
T ss_pred eeccce-EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCCc-EEEecc
Confidence 544443 99999999998777664432211111211112456666677777775666555 666667765542 111111
Q ss_pred ecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 321 KAHNADVNVISWNRL-ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~-~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
. -..--..+.|+.+ .+..|+++. .+.+++.-+...++ -.+++..- ......+++.+ ....+++.+.
T Consensus 668 s-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqk--l~irtvpl-~~~prrI~~q~-~sl~~~v~s~ 734 (1096)
T KOG1897|consen 668 S-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQK--LHIRTVPL-GESPRRICYQE-SSLTFGVLSN 734 (1096)
T ss_pred c-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhh--cceeeecC-CCChhheEecc-cceEEEEEec
Confidence 1 1111122234322 223455544 45666665554432 12344333 34557788877 3255555543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=30 Score=37.33 Aligned_cols=266 Identities=11% Similarity=-0.010 Sum_probs=128.3
Q ss_pred CCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCC
Q 039302 50 EGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNK 129 (479)
Q Consensus 50 ~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~ 129 (479)
..|++.+|+..+..=+. -|---.+.|-||+ .+|+.+.-+.|.+...|+|.++..
T Consensus 109 ~~~~~llD~n~~a~~~~---~~~l~~~~~Spdg-----------~~la~~~d~~G~E~~~l~v~d~~t------------ 162 (686)
T PRK10115 109 DEWETLLDANKRAAHSE---FYTLGGMAITPDN-----------TIMALAEDFLSRRQYGIRFRNLET------------ 162 (686)
T ss_pred CCCEEEEcchhhccCCC---cEEEeEEEECCCC-----------CEEEEEecCCCcEEEEEEEEECCC------------
Confidence 34789999987632111 1222356666663 267777777888888898887721
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCC-----ceEEEEeCCCCcc
Q 039302 130 PATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADT-----GHVQVWDFRSHLN 204 (479)
Q Consensus 130 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~d-----g~V~iwd~~~~~~ 204 (479)
+.... ..+.... ..+.|.+++..++.+...+ ..|+.+++.+...
T Consensus 163 ---------------------------g~~l~--~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 163 ---------------------------GNWYP--ELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred ---------------------------CCCCC--ccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 00000 0011111 4589999887777765433 3677778776211
Q ss_pred cccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC-CCCCeEEEEe---CCCeEEEEecCCC-CccccCCCCcccC
Q 039302 205 ALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP-VAPGRLVSGD---CNSCIHLWEPASD-ATWNVDPNPFIGH 279 (479)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~l~sg~---~dg~I~lwd~~~~-~~~~~~~~~~~~h 279 (479)
+....+.......+...+.+ ++. +++..+ .++.+.+++.... ..+. .+..+
T Consensus 212 -------------------~d~lv~~e~~~~~~~~~~~s~d~~-~l~i~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ 267 (686)
T PRK10115 212 -------------------QDELVYEEKDDTFYVSLHKTTSKH-YVVIHLASATTSEVLLLDAELADAEPF----VFLPR 267 (686)
T ss_pred -------------------HCeEEEeeCCCCEEEEEEEcCCCC-EEEEEEECCccccEEEEECcCCCCCce----EEEEC
Confidence 22223333222333233333 555 443333 2357888885321 1111 11111
Q ss_pred CC-cEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCceeeEEecC--CCCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 280 AA-SVEDLQWSPTESDVFASCSV---DGNIAIWDTRVGKSALMSFKAH--NADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 280 ~~-~V~~l~~sp~~~~~l~s~s~---dg~I~iwD~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
.. ....+. +..+. +++.... ...|...++.... ....+..+ ...|..+.+.. ..++++...+|.-+++-
T Consensus 268 ~~~~~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 268 RKDHEYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQ 342 (686)
T ss_pred CCCCEEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEE
Confidence 11 122222 32333 3333322 2234444444221 22334444 23688888873 36788888888765554
Q ss_pred CCCCCCCCceEEEee-cCCCCeEEEEEe--CCCCCEEEEEeC---CCcEEEEECCCC
Q 039302 354 LRLLKGGDSVVAHFE-YHKHPVTSIEWS--PHEGSTLAVSSA---DNQLTIWDLSLE 404 (479)
Q Consensus 354 lr~~~~~~~~~~~~~-~h~~~I~~v~~s--p~~~~~las~s~---Dg~I~iwdl~~~ 404 (479)
+..... .+..+. .....+..+.++ +++..++++.+. -+.+..+|+...
T Consensus 343 ~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 343 INRKTR---EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EcCCCC---ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 432211 233332 222233334444 333345555443 456777787654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.18 E-value=15 Score=33.92 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=75.3
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
+..| =.++...+||..+ .+.+.++.- .++.+.|+ .++. .|+..+....|+++|.
T Consensus 103 ~qLT-Wk~~~~f~yd~~t---------------------l~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 103 YQLT-WKEGTGFVYDPNT---------------------LKKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEE-SSSSEEEEEETTT---------------------TEEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-T
T ss_pred EEEE-ecCCeEEEEcccc---------------------ceEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECC
Confidence 3444 5678999999987 455566643 46889998 4455 6777776789999998
Q ss_pred CCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe---------------cCCCCE
Q 039302 264 ASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK---------------AHNADV 327 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~---------------~h~~~v 327 (479)
.+............+ --..++.+.|. +|. +.|=.-....|...|..++. ....+. ....-.
T Consensus 157 ~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 157 ETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp TT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred cccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCee
Confidence 765432211111111 11245666665 344 56655566667777887775 222221 113468
Q ss_pred EEEEEcCCCCcEEEEEe
Q 039302 328 NVISWNRLASCLLASGS 344 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs 344 (479)
|.|+|+|....+++||=
T Consensus 234 NGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EeEeEeCCCCEEEEEeC
Confidence 99999999878888873
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.11 E-value=0.049 Score=53.43 Aligned_cols=145 Identities=14% Similarity=0.254 Sum_probs=98.6
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
......|-+.+. -++.++.+..+..||-.. +... -..-++...+++|..++...++.+-..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~-nlavaca~tiv~~YD~ag-q~~l-----e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGH-NLAVACANTIVIYYDKAG-QVIL-----ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCC-ceehhhhhhHHHhhhhhc-ceec-----ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 334567888887 477777788888888543 2211 111245567889998888566677788999999998764
Q ss_pred ceeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 315 SALMSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 315 ~~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.....+. .|.. .-+.|++.. ..++.|...|.+.|+..+..+ .+.....|...+++++|.+. .+.+.++.|
T Consensus 109 tqqLE~gg~~s~--sll~wsKg~-~el~ig~~~gn~viynhgtsR----~iiv~Gkh~RRgtq~av~lE--d~vil~dcd 179 (615)
T KOG2247|consen 109 TQQLESGGTSSK--SLLAWSKGT-PELVIGNNAGNIVIYNHGTSR----RIIVMGKHQRRGTQIAVTLE--DYVILCDCD 179 (615)
T ss_pred HHHHhccCcchH--HHHhhccCC-ccccccccccceEEEeccchh----hhhhhcccccceeEEEeccc--ceeeecCcH
Confidence 2211221 1222 226888877 788889999999999998876 34444448999999999994 455555555
Q ss_pred Cc
Q 039302 394 NQ 395 (479)
Q Consensus 394 g~ 395 (479)
..
T Consensus 180 ~~ 181 (615)
T KOG2247|consen 180 NT 181 (615)
T ss_pred HH
Confidence 43
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.91 E-value=7.9 Score=38.27 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=94.0
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
-+.+-|...+ .++.+-..|.+.-|-+...+. .++...-....++|.+|.|+++.+ .+|+--.+.+|.+++....+.
T Consensus 25 sngvFfDDaN--kqlfavrSggatgvvvkgpnd-DVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 25 SNGVFFDDAN--KQLFAVRSGGATGVVVKGPND-DVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred ccceeeccCc--ceEEEEecCCeeEEEEeCCCC-CCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCch
Confidence 3344444333 344444456666776654332 111222223457999999999998 999999999999998854321
Q ss_pred ---eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-
Q 039302 316 ---ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS- 391 (479)
Q Consensus 316 ---~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s- 391 (479)
.....+..+..|....|.... -+|.-++.| +-+|-...... .++..+.|+..|.=-.|+|.-.-.|.+.+
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v~LL~t~~ 174 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAVILLSTTV 174 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEchhhh---hhhhhhhcccCccEEEEccccceEeeeccc
Confidence 122234445568888998753 556555544 56666554433 45666778888888889885533334433
Q ss_pred CCCcEEEEECC
Q 039302 392 ADNQLTIWDLS 402 (479)
Q Consensus 392 ~Dg~I~iwdl~ 402 (479)
..+++.=+-++
T Consensus 175 ~~n~lnpf~~~ 185 (657)
T KOG2377|consen 175 LENVLNPFHFR 185 (657)
T ss_pred cccccccEEEe
Confidence 34444444443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.87 E-value=4.9 Score=34.80 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=26.2
Q ss_pred ceEEEEeCCCCCC-----eEEEEeCCCeEEEEecCC
Q 039302 235 EGYAIDWNPVAPG-----RLVSGDCNSCIHLWEPAS 265 (479)
Q Consensus 235 ~v~~l~~s~~~~~-----~l~sg~~dg~I~lwd~~~ 265 (479)
.+.+++|||.|-+ .|++...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 7889999997643 799999999999998754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=88.60 E-value=42 Score=36.77 Aligned_cols=227 Identities=8% Similarity=0.106 Sum_probs=123.4
Q ss_pred cCCcceeEEEEe---cC---CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC---CceE
Q 039302 167 AHQGCVNRIRAM---SQ---NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK---DEGY 237 (479)
Q Consensus 167 ~H~~~V~~v~~~---p~---~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~ 237 (479)
.-..+|..|+|. .. ...+|+. -....+.|+...-+.. ... ...........++..+..+. .+..
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~-~~~-----~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRV-ISS-----IRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccc-ccc-----ccCCccccccceeEEechhhcCCCccc
Confidence 456788888888 21 1246665 3445678887333211 000 00000011345666665332 3677
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-----cccCCCCcccC-------CCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-----WNVDPNPFIGH-------AASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-----~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
.++|+|.....||..+..|.-.||++..... +... ....|+ .+.-..|.|.++.. .|+.++ ...+
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~-~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~-r~~l 226 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLS-RNISGSIIFDPEELSNWKRILWVSDSN-RLLVCN-RSKL 226 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeec-cCCCccccCCCcccCcceeeEecCCCC-EEEEEc-CCce
Confidence 9999999888999999999999999922111 1110 000111 13345788987776 666666 4678
Q ss_pred EEEEcCCCCcee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCCeEEEEEeC
Q 039302 306 AIWDTRVGKSAL-MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHPVTSIEWSP 381 (479)
Q Consensus 306 ~iwD~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~I~~v~~sp 381 (479)
.++|+.+..... .........|..+.-++....+++.-. ...|...|++........+...+. ..++-..+....
T Consensus 227 ~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~ 305 (765)
T PF10214_consen 227 MLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQK 305 (765)
T ss_pred EEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEEE
Confidence 999999875311 222334567888888877333333332 367888888874311113333332 122212222221
Q ss_pred C-CC--CEEEEEeCCCcEEEEECCCC
Q 039302 382 H-EG--STLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 382 ~-~~--~~las~s~Dg~I~iwdl~~~ 404 (479)
. +. .+++.+-....|.+|.+...
T Consensus 306 ~~~~~~~~~lyS~~~~~v~v~~f~~~ 331 (765)
T PF10214_consen 306 VGDTDFVVFLYSRLNPLVYVYFFSFS 331 (765)
T ss_pred cCCCEEEEEEEcCCCCcEEEEEEecC
Confidence 1 11 23344445778888888544
|
These proteins are found in fungi. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=88.60 E-value=11 Score=35.46 Aligned_cols=115 Identities=17% Similarity=0.297 Sum_probs=69.4
Q ss_pred CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCceeeEEec-----CC
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS------VDGNIAIWDTRVGKSALMSFKA-----HN 324 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s------~dg~I~iwD~~~~~~~~~~~~~-----h~ 324 (479)
..||+||+.. ..|.. .-.+-.+.|++++|..+.. ++++|. ....+..||+.... ...+.. -.
T Consensus 16 ~~lC~yd~~~-~qW~~---~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDN-SQWSS---PGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCC-CEeec---CCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCC
Confidence 4799999866 55653 2334567899999985555 777764 35678889988753 333333 23
Q ss_pred CCEEEEEEcCC-CCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEE-eecCCCCeEEEEEeC
Q 039302 325 ADVNVISWNRL-ASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAH-FEYHKHPVTSIEWSP 381 (479)
Q Consensus 325 ~~v~~l~~~p~-~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~-~~~h~~~I~~v~~sp 381 (479)
++|+.+.+... ...+.++|. .+| .|..||-.+.. .+.. .......|..+++-|
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~----~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS----SIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE----eccccccCCCCEEEEEEEEe
Confidence 67888887433 334555554 333 57777766554 2222 222244566666554
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.091 Score=51.61 Aligned_cols=112 Identities=16% Similarity=0.304 Sum_probs=81.5
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~ 245 (479)
.-++..-.++|..+++.+++.+-..+.+.|||+++... ....+.+ |.... +.|++..
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt--------------------qqLE~gg~~s~sl--l~wsKg~ 129 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT--------------------QQLESGGTSSKSL--LAWSKGT 129 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH--------------------HHHhccCcchHHH--HhhccCC
Confidence 34567778889888887887888899999999987321 1111222 22232 7899988
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+ .++.|-..|.+.|++..+... ....| |...+.+++|.+.+. .+.++.|..+.+-
T Consensus 130 ~-el~ig~~~gn~viynhgtsR~-----iiv~Gkh~RRgtq~av~lEd~--vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 130 P-ELVIGNNAGNIVIYNHGTSRR-----IIVMGKHQRRGTQIAVTLEDY--VILCDCDNTLSVT 185 (615)
T ss_pred c-cccccccccceEEEeccchhh-----hhhhcccccceeEEEecccce--eeecCcHHHHHHh
Confidence 7 899999999999999877544 22345 889999999999874 7777777665543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=18 Score=37.04 Aligned_cols=141 Identities=8% Similarity=0.025 Sum_probs=68.6
Q ss_pred eEEEEeCC--CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCce-eeEEe
Q 039302 248 RLVSGDCN--SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG---NIAIWDTRVGKSA-LMSFK 321 (479)
Q Consensus 248 ~l~sg~~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~~~~~~-~~~~~ 321 (479)
..+.|+.+ ..+..|+..+ ..|... .++.........+.. ++. +++.||.++ .+..||.++..-. +....
T Consensus 321 iYviGG~~~~~sve~ydp~~-n~W~~~-~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGD-AAWVNM-PSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred EEEECCcCCCCceEEEECCC-CeEEEC-CCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 56666653 3577888754 344321 222211111122222 344 778887654 4678888765310 00011
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-----CcE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD-----NQL 396 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D-----g~I 396 (479)
........+.+. + .+.+.|+ .+.+||.++.. +..+..+.........+.. ++.+.+.||.+ ..|
T Consensus 396 ~~r~~~~~~~~~--~-~IYv~GG---~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 396 YPHYKSCALVFG--R-RLFLVGR---NAEFYCESSNT--WTLIDDPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CccccceEEEEC--C-EEEEECC---ceEEecCCCCc--EeEcCCCCCCccccEEEEE---CCEEEEECCcCCCcccceE
Confidence 111111222332 3 6777774 57789987654 3333333222222222332 34788888764 356
Q ss_pred EEEECCCC
Q 039302 397 TIWDLSLE 404 (479)
Q Consensus 397 ~iwdl~~~ 404 (479)
.+||....
T Consensus 465 e~Yd~~~~ 472 (480)
T PHA02790 465 EVYNNRTY 472 (480)
T ss_pred EEEECCCC
Confidence 77777654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.87 E-value=28 Score=36.89 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=36.2
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSP 381 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp 381 (479)
...+..++.+|+. .+|+-=...|.|.+-+....+ ....+. .|..+ -.++|.-
T Consensus 216 ~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~----~lce~~~~~~~~p-~qm~Wcg 269 (829)
T KOG2280|consen 216 NSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQ----ILCEFNCTDHDPP-KQMAWCG 269 (829)
T ss_pred CceEEEEEEcCCc-ceEEEEecCCcEEEEecchhh----hhhccCCCCCCch-Hhceeec
Confidence 3567888999988 889999999999998877665 444444 23222 3666664
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.44 E-value=22 Score=40.02 Aligned_cols=141 Identities=16% Similarity=0.284 Sum_probs=80.0
Q ss_pred CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE--------CCCCCcEEEEEeCCCcEEEEEcC----CCCc----ee
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW--------SPTESDVFASCSVDGNIAIWDTR----VGKS----AL 317 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~--------sp~~~~~l~s~s~dg~I~iwD~~----~~~~----~~ 317 (479)
.|..+.+|+.++++.. ..+.+-...|..+.. -|.=+++|+.+. --.|.|+-+. +... ..
T Consensus 97 iDn~L~lWny~~~~e~----~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNEL----AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred eCCeEEEEEcCCCCcc----ccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccc
Confidence 4789999999885542 234444444444432 222232333333 3345554332 2111 01
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--------------------CceEEEee-cCCCCeEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--------------------DSVVAHFE-YHKHPVTS 376 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--------------------~~~~~~~~-~h~~~I~~ 376 (479)
.++......|+++....+| .++++|- || .||.+-..... -+.+..+. .+..+|..
T Consensus 172 ~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred eeeecCCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 2223345678899877777 6666654 55 44443211100 01122333 57789999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+.... ...++.+-++.++|.+|++...
T Consensus 248 i~ID~-SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 248 ITIDN-SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eEecc-ccceeeeeccCceEEEEEccCC
Confidence 99987 4489999999999999999874
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=87.34 E-value=47 Score=35.87 Aligned_cols=202 Identities=5% Similarity=-0.037 Sum_probs=98.7
Q ss_pred cceeEEEEecCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
-.+..+.++|++..++.+...+| .|++.|+.+ +..+...-... . ..++|.+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---------------------g~~l~~~i~~~-~-~~~~w~~D~ 183 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---------------------GNWYPELLDNV-E-PSFVWANDS 183 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---------------------CCCCCccccCc-c-eEEEEeeCC
Confidence 34677889999965555444433 477888865 22111111111 1 469999998
Q ss_pred CCeEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEE-EEEECCCCCcEEEEEe--CCCcEEEEEcCCCCcee
Q 039302 246 PGRLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVE-DLQWSPTESDVFASCS--VDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 246 ~~~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~s~s--~dg~I~iwD~~~~~~~~ 317 (479)
.+++++...+ ..|+.+++.+...... ..+........ .+..+.++..+++.++ .++.+.+++........
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~--lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~ 261 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE--LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP 261 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCe--EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc
Confidence 8555554422 3677888877522111 11222222222 3333446664444433 24578898854321111
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCC-C--eEEEEeCCCCCCCCceEEEeecC-C-CCeEEEEEeCCCCCEEEEEeC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDD-G--TFSIHDLRLLKGGDSVVAHFEYH-K-HPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g--~i~iwDlr~~~~~~~~~~~~~~h-~-~~I~~v~~sp~~~~~las~s~ 392 (479)
..+..+...+..-..+..+ .+++....+ . .|...++.... ....+-.+ . ..|..+.+.. ..++++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~-~ly~~tn~~~~~~~l~~~~~~~~~----~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~ 334 (686)
T PRK10115 262 FVFLPRRKDHEYSLDHYQH-RFYLRSNRHGKNFGLYRTRVRDEQ----QWEELIPPRENIMLEGFTLFT--DWLVVEERQ 334 (686)
T ss_pred eEEEECCCCCEEEEEeCCC-EEEEEEcCCCCCceEEEecCCCcc----cCeEEECCCCCCEEEEEEEEC--CEEEEEEEe
Confidence 2222222222211123223 333333222 2 34444444211 12333334 3 3688888873 367777777
Q ss_pred CCcEEEEECCC
Q 039302 393 DNQLTIWDLSL 403 (479)
Q Consensus 393 Dg~I~iwdl~~ 403 (479)
++.-.++-+..
T Consensus 335 ~g~~~l~~~~~ 345 (686)
T PRK10115 335 RGLTSLRQINR 345 (686)
T ss_pred CCEEEEEEEcC
Confidence 88766665543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.43 E-value=14 Score=37.21 Aligned_cols=126 Identities=12% Similarity=0.165 Sum_probs=72.7
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCC------eEEEEeCCCeEEEEecCCCCcccc--CCCCcccCCCcEEEEEECCCCCc
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPG------RLVSGDCNSCIHLWEPASDATWNV--DPNPFIGHAASVEDLQWSPTESD 294 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sg~~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~ 294 (479)
++.+-.+..|..- -+.|.|.... .-+.|-.+..|.-.|++-.+.... ....+.+. ....+..-..+ .
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK-n~Fss~~tTes-G- 574 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK-NKFSSGMTTES-G- 574 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc-ccccccccccC-c-
Confidence 5556666655543 5667765421 334455566666666655442111 01111111 11222222222 3
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
++|++|..|-|++||--..+ ....+.+-...|..|....+|..+||||- ..+.+-|++-
T Consensus 575 yIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred eEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 89999999999999954432 33345666778999999999966666653 5777888763
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.07 E-value=7.8 Score=38.98 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=51.3
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC---------CCCceeeEE-----------ecCCCCEEEEEEcCCC--C
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTR---------VGKSALMSF-----------KAHNADVNVISWNRLA--S 337 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~---------~~~~~~~~~-----------~~h~~~v~~l~~~p~~--~ 337 (479)
.-.|..+..++.|. .++-.+.+|.+.++=-+ .++ +.... ....-.+..++|+|+. .
T Consensus 103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk-~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGK-STVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCC-ceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence 45688899999999 67777778876665322 222 11111 1111235678999987 5
Q ss_pred cEEEEEeCCCeEEEEeCCCCC
Q 039302 338 CLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 338 ~~l~sgs~dg~i~iwDlr~~~ 358 (479)
..|+.-+.|..|++||+....
T Consensus 181 ~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred ceEEEEecCcEEEEEecCCcc
Confidence 677777889999999998654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.07 E-value=30 Score=32.43 Aligned_cols=164 Identities=13% Similarity=0.063 Sum_probs=98.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...+.-.+-+..++++.+- -++ +..+.-++|+|+... .+|...-.-.. ..++-.|.
T Consensus 80 ~~~i~~~~l~~Dv~vse~y-vyv--ad~ssGL~IvDIS~P--------------------~sP~~~~~lnt-~gyaygv~ 135 (370)
T COG5276 80 LSVINARDLFADVRVSEEY-VYV--ADWSSGLRIVDISTP--------------------DSPTLIGFLNT-DGYAYGVY 135 (370)
T ss_pred EEEEehhhhhheeEecccE-EEE--EcCCCceEEEeccCC--------------------CCcceeccccC-CceEEEEE
Confidence 4555667788888988754 333 345556999999883 22222111111 14444555
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
-.|+ ++..+..+.-+.+.|+.+.....+ ...+......-..++.| |+ +-..+..|+-+.|-|+.....++..-.-
T Consensus 136 vsGn-~aYVadlddgfLivdvsdpssP~l-agrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 136 VSGN-YAYVADLDDGFLIVDVSDPSSPQL-AGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred ecCC-EEEEeeccCcEEEEECCCCCCcee-eeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 5565 788888676777889877654332 12233334444677776 44 4455567888999999988665544322
Q ss_pred C-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 323 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 323 h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
. ...+.++..+++. -+++.. +--+.+-|....+
T Consensus 211 n~g~g~~sv~vsdnr-~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 211 NTGPGTYSVSVSDNR-AYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred ecCCceEEEEecCCe-eEEEEc--ccceEEEecCCCC
Confidence 2 3378888888766 444443 2345666766655
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.62 E-value=42 Score=34.90 Aligned_cols=103 Identities=10% Similarity=0.144 Sum_probs=49.9
Q ss_pred eEEEEeCC------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--------cEEEEEcCCC
Q 039302 248 RLVSGDCN------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--------NIAIWDTRVG 313 (479)
Q Consensus 248 ~l~sg~~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--------~I~iwD~~~~ 313 (479)
.++.|+.. ..+..||+.+ ..|.... .+.........+.. ++. +++.|+.++ .+.+||..+.
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLNT-NKWSKGS-PLPISHYGGCAIYH--DGK-IYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCCC-CeeeecC-CCCccccCceEEEE--CCE-EEEECCccCCCCCcccceEEEecCCCC
Confidence 56666632 3578899876 3444311 11111111112222 344 677776432 3888898875
Q ss_pred Cce-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCC
Q 039302 314 KSA-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 358 (479)
Q Consensus 314 ~~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~ 358 (479)
+-. +............+.+ ++ .+++.||.+ ..|.+||..+..
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 311 1111111111122233 34 677777764 467888877654
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.29 E-value=48 Score=37.15 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=70.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+-....+|.|.+++-.. | .|++ +..-.|.||+++.... ..++. | -.-+++-....
T Consensus 1091 l~~eE~KGtVsavceV~-G--~l~~-~~GqKI~v~~l~r~~~------------------ligVa-F--iD~~~yv~s~~ 1145 (1366)
T KOG1896|consen 1091 LYIEEQKGTVSAVCEVR-G--HLLS-SQGQKIIVRKLDRDSE------------------LIGVA-F--IDLPLYVHSMK 1145 (1366)
T ss_pred eehhhcccceEEEEEec-c--EEEE-ccCcEEEEEEeccCCc------------------ceeeE-E--eccceeEEehh
Confidence 33445678888887653 5 3445 4456799999965210 11111 1 12244444444
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc-EEEEEeCCCcEEEEEcC
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD-VFASCSVDGNIAIWDTR 311 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-~l~s~s~dg~I~iwD~~ 311 (479)
--++ +|+.|+--..|.+.-...... ......-....-.|.++.|--+|.+ .|+++..++.|++|-..
T Consensus 1146 ~vkn-lIl~gDV~ksisfl~fqeep~-rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1146 VVKN-LILAGDVMKSISFLGFQEEPY-RLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhh-heehhhhhhceEEEEEccCce-EEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 4454 888888777777766654222 1101111112335778888777664 57888889999998654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.81 E-value=5.8 Score=35.85 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=44.8
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeE------Ee-------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMS------FK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~------~~-------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
..+. ++++.+.+|.+++||+.+.+..+.. +. .....|..+.++.+| .-|++-+ +|..+.|+...
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 3455 7888899999999999987532111 11 345678888888777 5555544 47788888765
Q ss_pred CC
Q 039302 357 LK 358 (479)
Q Consensus 357 ~~ 358 (479)
..
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.62 E-value=6.4 Score=35.60 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=46.7
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCce--EEE-ee-------cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSV--VAH-FE-------YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~--~~~-~~-------~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..+ .+|++-+.+|.+++||+.+.+..-.+ +.. +. .....|.++.++.++ .-|++-+ +|..+.|+...
T Consensus 20 ~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 334 67888899999999999987742111 000 11 355678999999754 6666655 57889998876
Q ss_pred C
Q 039302 404 E 404 (479)
Q Consensus 404 ~ 404 (479)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 5
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.48 E-value=23 Score=39.85 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=89.9
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC-----
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN----- 242 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----- 242 (479)
|...-..+-+.|.-.+.-+ +.|..+.+|++++. .....+.+-...|..+..-
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~---------------------~e~~~~d~~shtIl~V~LvkPkpg 133 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESD---------------------NELAEYDGLSHTILKVGLVKPKPG 133 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCC---------------------CccccccchhhhheeeeeecCCCC
Confidence 4444555556664433333 46788999999882 2223333333344444332
Q ss_pred ---CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcc------cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC--
Q 039302 243 ---PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFI------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR-- 311 (479)
Q Consensus 243 ---~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~-- 311 (479)
|.-...|+.+. --.|.|+-+.-...... ...+. .....|+|+....+|+ +|.+|- || .||.+-
T Consensus 134 vFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~-~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~-dg--~lyEl~Yq 207 (1311)
T KOG1900|consen 134 VFVPEIQHLLVVAT-PVEIVILGVSFDEFTGE-LSIFNTSFKISVDGVSVNCITYTENGR-IFFAGR-DG--NLYELVYQ 207 (1311)
T ss_pred cchhhhheeEEecc-cceEEEEEEEeccccCc-ccccccceeeecCCceEEEEEeccCCc-EEEeec-CC--CEEEEEEe
Confidence 22221333333 44566654432111000 11122 2256799999888887 666655 55 444431
Q ss_pred --CC-------Cc------------eeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 312 --VG-------KS------------ALMSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 312 --~~-------~~------------~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
.+ +. .+.++. .+..+|..|...... .++.+-+..|+|.+||+....
T Consensus 208 ~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 208 AEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccCCC
Confidence 11 00 112233 567789999999877 899999999999999998743
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=83.64 E-value=57 Score=33.57 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=58.6
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE-----------------EeCCCeEEEEeCCCC
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS-----------------GSDDGTFSIHDLRLL 357 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-----------------gs~dg~i~iwDlr~~ 357 (479)
+++.++.+|.+...|.++++ .+-..... ...++.+| + .+++. ...+|.|.-.|+.++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~-~~W~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGK-LISARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCc-EeeEeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 57778889999999999986 33333211 11233344 2 22221 124578888888888
Q ss_pred CCCCceEEEeecC--C------CCe--EEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 358 KGGDSVVAHFEYH--K------HPV--TSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 358 ~~~~~~~~~~~~h--~------~~I--~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+ .+-..... . .+. ..+.. .+.+|+.++.||.|+.+|..+++
T Consensus 377 ~----~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 377 K----VVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred c----EeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCc
Confidence 7 34443321 0 111 12222 23678888899999999998874
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=82.93 E-value=36 Score=32.02 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=46.3
Q ss_pred CCCceEEEEeCCCCCCeEEEEe------CCCeEEEEecCCCCccccCCCCc-ccCCCcEEEEEECCCC-CcEEEEEe-CC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGD------CNSCIHLWEPASDATWNVDPNPF-IGHAASVEDLQWSPTE-SDVFASCS-VD 302 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~------~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~~l~s~s-~d 302 (479)
-.+.|++|.|..... .++.|. ....+..||..+. .|....... ..-.++|+.+.+...+ .++++.|. .+
T Consensus 35 i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~-~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~ 112 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ-TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN 112 (281)
T ss_pred ceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC-eeeecCCcccccCCCcEEEEEeeccCCceEEEeceecC
Confidence 356899999986554 666664 4567889998763 443211111 2234788888875433 33554544 33
Q ss_pred --CcEEEEEcCC
Q 039302 303 --GNIAIWDTRV 312 (479)
Q Consensus 303 --g~I~iwD~~~ 312 (479)
..|..||=..
T Consensus 113 g~~~l~~~dGs~ 124 (281)
T PF12768_consen 113 GSTFLMKYDGSS 124 (281)
T ss_pred CCceEEEEcCCc
Confidence 3466665443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=81.82 E-value=18 Score=36.05 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCc-EEEEEECC--------------
Q 039302 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAAS-VEDLQWSP-------------- 290 (479)
Q Consensus 226 ~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~l~~sp-------------- 290 (479)
...+......+.++..+|.+. +.|+.+.-|+|.|+|+.++... +.++|-.+. +.-+....
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vv----rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVV----RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred EEeeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhh----hhhccCccceEEEEEeecccccccccccccCC
Confidence 344555666899999999987 8888888899999999875431 223332211 11111000
Q ss_pred --C-CCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 291 --T-ESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 291 --~-~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
. ...+++-+-.-|.|-||.++.+. .+..+
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~-Rv~a~ 406 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGP-RVAAF 406 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCC-EEEEE
Confidence 0 11134445678899999999885 44444
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.12 E-value=20 Score=35.53 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=92.6
Q ss_pred CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CC----CEE-EEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NA----DVN-VISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 279 h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~----~v~-~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
-...|..+-..|+++ .+..-+. ..+.++++.+..-...++... .+ .|+ .+..-. |+.-|+++..||.|.-|
T Consensus 219 ~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 219 PFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeee
Confidence 345678888999999 4444443 678888877653211122111 11 122 112122 33667888889988766
Q ss_pred -eCCCCCC-CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCc
Q 039302 353 -DLRLLKG-GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQ 430 (479)
Q Consensus 353 -Dlr~~~~-~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 430 (479)
|.|.... .-..++.++-...++.-+.-. +..+-|++-+..|++.++.-...+ .
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~------------------------~ 350 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEK------------------------L 350 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCc------------------------c
Confidence 6665442 111233333333444333322 234678888888888877655442 2
Q ss_pred eEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeeccC
Q 039302 431 LLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQ 471 (479)
Q Consensus 431 l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~~ 471 (479)
+++... -..+.-++++|.+. .+.+-..++++++++.|-.
T Consensus 351 lL~~~~-~~~~~~~~~Sp~~~-~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 351 LLFERA-YQAPQLVAMSPNQA-YLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred eehhhh-hcCcceeeeCcccc-hheeecCCceEEEEecCCC
Confidence 333322 12567789999986 5566666778999887753
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.05 E-value=1e+02 Score=34.19 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=73.3
Q ss_pred eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc-EEEEEe-----------CCCcEEEEEcCCCCceeeEEecCC
Q 039302 257 CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD-VFASCS-----------VDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-~l~s~s-----------~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
.|++.|..++............-...|.++.|+..+.. ++++|. .+|.++.|++-.....+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 36666665543322111111122345667777665553 333332 234466666544332222221111
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
-+-...+..|..+ ++++| ....+++||+-+.+ +++... .-...|++++|.- ..++.|..-..|.++-.+
T Consensus 934 ~~~~v~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~----lLRk~e~k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 934 IPGPVGAICPFQG-RVLAG-VGRFLRLYDLGKKK----LLRKCELKFIPNRISSIQTYG---ARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCccceEEeccCC-EEEEe-cccEEEEeeCChHH----HHhhhhhccCceEEEEEeecc---eEEEEeeccceEEEEEEe
Confidence 1223345667774 44443 34689999998776 444332 2356788888863 677777776677777666
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
...
T Consensus 1005 ~~~ 1007 (1205)
T KOG1898|consen 1005 RED 1007 (1205)
T ss_pred cCC
Confidence 553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 479 | ||||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-36 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-35 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-35 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-35 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-35 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-35 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-10 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 8e-09 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 8e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 7e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 8e-07 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 9e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-06 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-06 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 6e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 7e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 2e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-05 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 3e-05 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 4e-05 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 5e-05 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 6e-05 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 7e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 1e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-04 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 8e-04 |
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.98 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.83 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.83 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.82 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.78 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.78 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.77 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.76 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.75 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.75 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.75 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.73 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.72 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.66 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.64 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.63 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.63 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.62 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.6 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.6 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.56 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.56 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.54 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.5 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.5 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.49 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.49 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.48 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.48 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.47 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.46 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.45 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.45 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.44 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.43 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.42 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.4 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.38 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.37 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.37 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.35 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.35 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.34 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.34 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.33 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.33 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.32 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.31 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.3 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.29 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.27 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.24 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.24 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.23 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.13 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.13 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.09 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.06 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.03 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.96 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.94 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.9 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.9 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.9 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.8 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.78 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.76 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.76 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.69 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.67 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.66 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.62 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.6 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.58 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.57 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.53 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.49 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.39 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.38 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.37 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.36 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.34 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.33 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.33 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.32 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.32 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.3 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.3 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.27 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.21 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.2 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.2 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.19 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.17 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.16 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.07 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.06 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.04 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.02 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.02 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.01 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.99 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.97 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.96 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.95 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.94 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.93 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.91 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.88 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.88 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.88 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.86 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.84 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.73 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.72 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.69 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.68 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.55 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.53 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.52 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.5 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.31 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.31 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.29 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.28 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.28 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.26 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.24 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.24 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.23 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.19 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.17 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.15 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.13 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.12 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.02 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.02 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.96 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.94 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.81 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.77 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.66 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.61 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.59 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.58 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.53 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.52 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.42 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.33 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.29 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.16 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.02 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.87 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.37 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.18 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.15 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.91 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.89 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.32 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.24 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.81 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.62 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 93.57 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.45 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.34 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 93.19 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 93.06 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.98 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.66 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.9 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 90.96 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 90.45 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 90.09 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 89.76 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 88.69 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 87.77 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 87.59 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 87.47 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 87.37 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 87.04 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 86.76 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 86.59 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.1 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 84.69 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 82.99 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 82.08 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 82.02 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 80.58 |
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=428.84 Aligned_cols=378 Identities=31% Similarity=0.541 Sum_probs=297.9
Q ss_pred CCeeecCCcccCCCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEee
Q 039302 37 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVS 116 (479)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~ 116 (479)
+.++|+...+ +||+|+|++.++||||+|||+|+..+..+.+|| .+++++|||+.+ ..|+|+|+++.
T Consensus 24 ~~~~wk~n~~------------~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~-~~~~~~GT~t~~-~~n~i~i~~~~ 89 (430)
T 2xyi_A 24 EYKIWKKNTP------------FLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYS-VHRLILGTHTSD-EQNHLLIASVQ 89 (430)
T ss_dssp HHHHHHHHHH------------HHEEEEEEEECSSCCSCEEECSCCEECTTCSCE-EEEEEEECCCSS-SCEEEEEEEEE
T ss_pred HHhhHhhCCh------------HHHHHHhhcCCCCCceEEEECcccccccCCCcc-eEEEEEEEcCCC-CCCEEEEEEEE
Confidence 3568887776 999999999999999999999999888888898 699999999998 99999999996
Q ss_pred ecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCC--CCCcee-EEEEecCCcceeEEEEecCCCcEEEEEeCCce
Q 039302 117 NISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGG--SGTPIL-QLRKVAHQGCVNRIRAMSQNPHICASWADTGH 193 (479)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~p~~-~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~ 193 (479)
++.... +. ++.++ |+++++.++ ...+.+ ....++|.+.|++++|+|+++.+||+++.+|.
T Consensus 90 -lp~~~~----------~~--~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~ 152 (430)
T 2xyi_A 90 -LPSEDA----------QF--DGSHY----DNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSD 152 (430)
T ss_dssp -EC------------------------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSC
T ss_pred -CCCCcc----------cc--ccccc----cccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCc
Confidence 432211 00 11111 111111111 124444 46789999999999999986689999999999
Q ss_pred EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc---
Q 039302 194 VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--- 270 (479)
Q Consensus 194 V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~--- 270 (479)
|+||++......... .....++..+.+|...|++|+|+|.+.++|++|+.||.|++|++.......
T Consensus 153 V~vwd~~~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 221 (430)
T 2xyi_A 153 VLVFDYTKHPSKPEP-----------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI 221 (430)
T ss_dssp EEEEEGGGSCSSCCT-----------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE
T ss_pred EEEEECCCcccccCc-----------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee
Confidence 999999763222110 012577888999999999999999987799999999999999998743211
Q ss_pred cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe
Q 039302 271 VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWNRLASCLLASGSDDGT 348 (479)
Q Consensus 271 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~ 348 (479)
.....+.+|...|.+++|+|.+..+|++++.||.|++||+++.. .++..+..|...|++++|+|++..+|++|+.||.
T Consensus 222 ~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~ 301 (430)
T 2xyi_A 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301 (430)
T ss_dssp ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence 11244668999999999999766699999999999999999873 3667778999999999999999779999999999
Q ss_pred EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCC
Q 039302 349 FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP 428 (479)
Q Consensus 349 i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p 428 (479)
|++||++.... ++..+..|..+|++++|+|++..+|++++.|++|+|||+.......... .....+
T Consensus 302 v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~ 367 (430)
T 2xyi_A 302 VALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE-----------DAEDGP 367 (430)
T ss_dssp EEEEETTCTTS---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH-----------HHHHCC
T ss_pred EEEEeCCCCCC---CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc-----------ccccCC
Confidence 99999998654 7889999999999999999887899999999999999998743210000 011456
Q ss_pred CceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 429 PQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 429 ~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+++++.|.+|. .|++++|+|+++++|++++.|+ |+||++...
T Consensus 368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 78899998877 5999999999988999999999 999999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=321.55 Aligned_cols=248 Identities=24% Similarity=0.356 Sum_probs=209.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc----EEecCCCCceEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL----VKFGGHKDEGYAI 239 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l 239 (479)
....|...|++++|+|++ .|++|+.||+|+|||+.. .+.+ ..+.+|...|++|
T Consensus 77 ~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~---------------------~~~~~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGER--GILVASDSGAVELWELDE---------------------NETLIVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp EEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECT---------------------TSSCEEEEEEEECCSSCEEEE
T ss_pred eeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccC---------------------CCceeEeeccccCCCCCEEEE
Confidence 455678899999999986 566889999999999987 2322 3355899999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|++. +|++|+.||+|++||+.++.. ...+.+|...|++++|+|++..+|++|+.||+|+|||+++++ +...
T Consensus 134 ~~spdg~-~l~sgs~d~~i~iwd~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~ 207 (344)
T 4gqb_B 134 SVLSSGT-QAVSGSKDICIKVWDLAQQVV----LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQ 207 (344)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEE
T ss_pred EECCCCC-EEEEEeCCCeEEEEECCCCcE----EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeee
Confidence 9999998 999999999999999987544 245789999999999999998799999999999999999886 4444
Q ss_pred E--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 320 F--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 320 ~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+ ..|...+++++|+|.+..+|++|+.||.|+|||+++.+ ++..+.+|...|++++|+|++..+|++|+.|++|+
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~ 283 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS----CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA 283 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc----EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence 4 45667899999999887899999999999999999988 78999999999999999998767899999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
|||++.. +++....+...|++++|+|+++.+|+|++.|+ |++|++..
T Consensus 284 vwd~~~~-------------------------~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 284 VLDSSLS-------------------------ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EECTTCC-------------------------EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEECCCC-------------------------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999876 33333333347999999999988999999888 99998754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=323.96 Aligned_cols=246 Identities=21% Similarity=0.345 Sum_probs=216.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. .+++.++.+|...|.+++|+
T Consensus 144 ~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~---------------------~~~~~~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 144 RTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQG---------------------FECIRTMHGHDHNVSSVSIM 201 (410)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTS---------------------SCEEECCCCCSSCEEEEEEC
T ss_pred EEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---------------------CceeEEEcCCCCCEEEEEEe
Confidence 4677999999999999998 7999999999999999976 56778889999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.|++|++||+.++.. ...+.+|...|.++.|+|++. +|++|+.||+|++||+++.. +...+..
T Consensus 202 p~~~-~l~s~s~D~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~-~~~~~~~ 274 (410)
T 1vyh_C 202 PNGD-HIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKE-CKAELRE 274 (410)
T ss_dssp SSSS-EEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-EEEEECC
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCcE----EEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCc-eeeEecC
Confidence 9998 999999999999999987654 245788999999999999998 99999999999999999875 6778889
Q ss_pred CCCCEEEEEEcCCC-------------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 323 HNADVNVISWNRLA-------------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 323 h~~~v~~l~~~p~~-------------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
|...|.+++|+|++ +.+|++|+.||.|++||++++. ++..+.+|...|++++|+|++
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSS
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCC
Confidence 99999999999963 2689999999999999999887 889999999999999999955
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
.+|++|+.|++|++||+..... ...+..|. ..|++++|+|+++ +|++++.|+ |
T Consensus 351 -~~l~s~s~D~~i~vwd~~~~~~----------------------~~~~~~h~--~~v~~l~~~~~~~-~l~sgs~D~~i 404 (410)
T 1vyh_C 351 -KFILSCADDKTLRVWDYKNKRC----------------------MKTLNAHE--HFVTSLDFHKTAP-YVVTGSVDQTV 404 (410)
T ss_dssp -SCEEEEETTTEEEEECCTTSCC----------------------CEEEECCS--SCEEEEEECSSSS-CEEEEETTSEE
T ss_pred -CEEEEEeCCCeEEEEECCCCce----------------------EEEEcCCC--CcEEEEEEcCCCC-EEEEEeCCCcE
Confidence 8999999999999999977632 12333333 4799999999996 677888888 9
Q ss_pred eEEee
Q 039302 463 NILMP 467 (479)
Q Consensus 463 ~iw~~ 467 (479)
+||++
T Consensus 405 ~vW~~ 409 (410)
T 1vyh_C 405 KVWEC 409 (410)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=305.75 Aligned_cols=253 Identities=21% Similarity=0.292 Sum_probs=214.7
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+..|...|++++|+|++ .+|++|+.||+|+|||+.. .+.+..+.+|...|.+++
T Consensus 47 ~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~---------------------~~~~~~~~~h~~~v~~~~ 104 (304)
T 2ynn_A 47 EVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEAHPDYIRSIA 104 (304)
T ss_dssp EEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEE
T ss_pred eeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEeCCCCcEEEEE
Confidence 335677899999999999998 7899999999999999987 677888999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.||+|++||+.++... ...+.+|...|.+++|+|.+..+|++|+.||+|++||++.........
T Consensus 105 ~~~~~~-~l~sgs~D~~v~lWd~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~ 180 (304)
T 2ynn_A 105 VHPTKP-YVLSGSDDLTVKLWNWENNWAL---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (304)
T ss_dssp ECSSSS-EEEEEETTSCEEEEEGGGTTEE---EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EcCCCC-EEEEECCCCeEEEEECCCCcch---hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec
Confidence 999998 9999999999999999765332 245778999999999999655599999999999999999876333334
Q ss_pred ecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 321 KAHNADVNVISWNRL-ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~-~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
..|...+..++|+|. ...+|++|+.|++|++||+++.. ++..+.+|...|++++|+|++ .+|++|+.|++|++|
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW 255 (304)
T ss_dssp CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEE
T ss_pred cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc----cceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEE
Confidence 567788999999873 22799999999999999999887 899999999999999999965 899999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-cCCCCeeeEEEeCCCCc-EEEEEcCCCceEEeeec
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-QGQKDLKELHWHTQVPG-MIVSTAADGFNILMPSN 469 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~g~~~V~~v~w~p~~~~-ll~s~~~dgi~iw~~~~ 469 (479)
|+.+.+ ++... .+...+.+++|+|.+.. ++++++++|+.+|.+.+
T Consensus 256 d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 256 NSSTYK-------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ETTTCC-------------------------EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred ECCCCc-------------------------eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 998763 22222 23357999999998854 58999999999988754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=308.12 Aligned_cols=287 Identities=19% Similarity=0.278 Sum_probs=238.9
Q ss_pred ccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039302 69 IGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148 (479)
Q Consensus 69 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (479)
..=+..++.|.|+... ...+|++|. .++.|.||++..
T Consensus 31 H~~~V~~v~~~~~~~~-------~~~~l~tgs-----~D~~v~vW~~~~------------------------------- 67 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKE-------NSETVVTGS-----LDDLVKVWKWRD------------------------------- 67 (321)
T ss_dssp SSSCEEEEEEC--------------CEEEEEE-----TTSCEEEEEEET-------------------------------
T ss_pred CCCcEEEEEEecCCCC-------CCCEEEEEc-----CCCCEEEEECCC-------------------------------
Confidence 3456678888876321 123577763 688999998831
Q ss_pred ccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE
Q 039302 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK 228 (479)
Q Consensus 149 ~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479)
....+...+.+|...|++++|++++ .++++++.||+|+|||+.. .+.+..
T Consensus 68 --------~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~---------------------~~~~~~ 117 (321)
T 3ow8_A 68 --------ERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLEN---------------------GKQIKS 117 (321)
T ss_dssp --------TEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT---------------------TEEEEE
T ss_pred --------CCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CCEEEE
Confidence 0223445678999999999999998 7899999999999999987 566778
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+..|...+.+++|+|++. +|++|+.+|.|++|++.++... ..+..|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 118 ~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~----~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iw 191 (321)
T 3ow8_A 118 IDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKE----YSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIF 191 (321)
T ss_dssp EECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEE----EEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCcee----EEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEE
Confidence 888999999999999998 9999999999999999876542 34667888999999999998 99999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
|+++++ .+..+.+|...|++++|+|++ .+|++|+.||.|+|||++... .+..+.+|...|++++|+|++ .+|+
T Consensus 192 d~~~~~-~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~-~~l~ 264 (321)
T 3ow8_A 192 DIATGK-LLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDD-THFV 264 (321)
T ss_dssp ETTTTE-EEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEE
T ss_pred ECCCCc-EEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCC-CEEE
Confidence 999875 777889999999999999999 899999999999999999877 788999999999999999965 8999
Q ss_pred EEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+++.|++|+|||+.... .+....+| ..|.+++|+|++. +|++++.|+ |+||+
T Consensus 265 s~s~D~~v~iwd~~~~~-------------------------~~~~~~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGTRT-------------------------CVHTFFDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEETTSCEEEEETTTTE-------------------------EEEEECCCSSCEEEEEECTTSS-EEEEEETTCCEEEEE
T ss_pred EEeCCCcEEEEeCCCCE-------------------------EEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEe
Confidence 99999999999998763 22222223 4799999999986 777888887 99998
Q ss_pred e
Q 039302 467 P 467 (479)
Q Consensus 467 ~ 467 (479)
.
T Consensus 319 ~ 319 (321)
T 3ow8_A 319 C 319 (321)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=305.48 Aligned_cols=253 Identities=17% Similarity=0.248 Sum_probs=217.2
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ...+..+.+|...|.+++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~---------------------~~~~~~~~~~~~~v~~~~ 62 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYET---------------------QVEVRSIQVTETPVRAGK 62 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEEE
T ss_pred eEEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC---------------------CceeEEeeccCCcEEEEE
Confidence 345688999999999999999 7888999999999999987 566788899999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.|+.|++||+.++... ..+.+|...|++++|+|++. +|++|+.||+|++||+++.......+
T Consensus 63 ~~~~~~-~l~s~s~d~~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 63 FIARKN-WIIVGSDDFRIRVFNYNTGEKV----VDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp EEGGGT-EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred EeCCCC-EEEEECCCCEEEEEECCCCcEE----EEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhh
Confidence 999998 9999999999999999886542 45788999999999999998 99999999999999999876566778
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC-CCCEEEEEeCCCcEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH-EGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~-~~~~las~s~Dg~I~iw 399 (479)
.+|...|++++|+|.++.+|++|+.|++|++||++.... ......+|...|..+.|+|. ++.+|++|+.|++|++|
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iW 213 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEE
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 899999999999996558999999999999999988773 33444567789999999884 34799999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|++... .+....+| ..|..++|+|+++ +|++++.|+ |++|++.+.
T Consensus 214 d~~~~~-------------------------~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 214 DYQTKS-------------------------CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp ETTTTE-------------------------EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC
T ss_pred eCCCCc-------------------------cceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCC
Confidence 998763 23333333 4799999999986 788888888 999997653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=312.36 Aligned_cols=255 Identities=19% Similarity=0.281 Sum_probs=207.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|...|++++|+|++ .++ +++.||+|+|||+..... .........+|...|++|+|+
T Consensus 88 ~~~~~~~~~V~~~~~s~d~-~~l-~~s~dg~v~lWd~~~~~~-----------------~~~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEK-GIL-VASDSGAVELWEILEKES-----------------LLVNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp SEEEECSSCEEEEEEETTT-EEE-EEETTSCEEEC-------------------------CCCCEEECCCSSCEEEEEEC
T ss_pred cccCCCCCCEEEEEEcCCC-CEE-EEECCCEEEEeeccccce-----------------eEEEeeccCCCCCCEEEEEEC
Confidence 4667899999999999988 555 568899999999976211 012234556899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~ 321 (479)
|++. +|++|+.||.|++||+.++.. ...+.+|...|++++|+|++..+|++++.||+|+|||+++++.. ...+.
T Consensus 149 pdg~-~l~sgs~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 149 SDGT-QAVSGGKDFSVKVWDLSQKAV----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp SSSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 9998 999999999999999987543 24577899999999999998778999999999999999987632 12235
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|...+++++|+|+++.+|++|+.|+.|++||+++.+ ++..+.+|...|++++|+|+++.+||+|+.|++|+|||+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD----SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCc----EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 6778899999999987899999999999999999987 788999999999999999987789999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+ ++....+...|++|+|+|....+|+|++.|+ |++|++.+-
T Consensus 300 ~~~~-------------------------~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 300 DFSE-------------------------VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TSCE-------------------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCc-------------------------EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 8762 3333333357999999996556899999988 999998654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=304.12 Aligned_cols=265 Identities=19% Similarity=0.357 Sum_probs=214.1
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|.+.|++++|+|++ .+||+|+.|++|+||++... ....+.++.+|...|.+++|+|+
T Consensus 57 ~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~-------------------~~~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQD-------------------DFECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp CSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC--------------------EEEEEEECCCSSCEEEEEECTT
T ss_pred ccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCC-------------------CeEEEEEccCCCCCceEEEEeCC
Confidence 36899999999999998 78999999999999998762 12456788999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEecC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKAH 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h 323 (479)
+. +|++|+.|+.|++||+........ ...+.+|...|.+++|+|++. +|++|+.|++|++||++.... +...+.+|
T Consensus 117 ~~-~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h 193 (345)
T 3fm0_A 117 GN-LLATCSRDKSVWVWEVDEEDEYEC-VSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGH 193 (345)
T ss_dssp SS-EEEEEETTSCEEEEEECTTSCEEE-EEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CC-EEEEEECCCeEEEEECCCCCCeEE-EEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCC
Confidence 98 999999999999999977543211 234678999999999999998 999999999999999987642 45678899
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-----------CceEEEeec-CCCCeEEEEEeCCCCCEEEEEe
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-----------DSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-----------~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s 391 (479)
...|++++|+|++ .+|++|+.||+|+|||++..... ..++..+.+ |...|++++|+|.+ ..|++++
T Consensus 194 ~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~ 271 (345)
T 3fm0_A 194 ESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATAC 271 (345)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEE
T ss_pred CCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEe
Confidence 9999999999999 89999999999999997543211 113445555 89999999999965 8899999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe--ecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI--HQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.|+.|++|++...... ..+...+.. +.+|. .|++++|+|+++.+|+|++.|| |++|++
T Consensus 272 ~d~~i~vw~~~~~~~~------------------~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 272 GDDAIRVFQEDPNSDP------------------QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp TTSCEEEEEECTTSCT------------------TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEEeCCCCCc------------------ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 9999999998765321 111122222 23444 6999999999878999999999 999999
Q ss_pred eccCC
Q 039302 468 SNIQS 472 (479)
Q Consensus 468 ~~~~~ 472 (479)
.+..+
T Consensus 334 ~~~~~ 338 (345)
T 3fm0_A 334 QRPEG 338 (345)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=297.96 Aligned_cols=262 Identities=18% Similarity=0.287 Sum_probs=210.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+||+|+.||+|+|||+... ..+++.++.+|..+|++++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~-------------------~~~~~~~l~gH~~~V~~v~~s 62 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 62 (297)
T ss_dssp EECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSS-------------------CBCCCEEECCCSSCEEEEEEC
T ss_pred eeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCC-------------------CcEEEEEEccccCCeEEEEec
Confidence 3567899999999999999 78999999999999999751 146678899999999999998
Q ss_pred CC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-ee
Q 039302 243 PV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS-AL 317 (479)
Q Consensus 243 ~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~-~~ 317 (479)
+. +. +|++|+.||+|+|||+.++.... ...+.+|...|++++|+|+ +. +|++++.||+|++||++.... ..
T Consensus 63 ~~~~g~-~l~s~s~D~~v~iWd~~~~~~~~--~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 63 HPKFGT-ILASCSYDGKVMIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CGGGCS-EEEEEETTTEEEEEEBSSSCBCC--CEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred CCCcCC-EEEEEcCCCEEEEEEcCCCceEE--EEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee
Confidence 74 55 99999999999999997653211 2346679999999999997 55 999999999999999987632 24
Q ss_pred eEEecCCCCEEEEEEcCCC------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 318 MSFKAHNADVNVISWNRLA------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
..+.+|...|++++|+|+. ..+|++|+.|++|+|||++...........+.+|...|++++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 5678999999999999973 26999999999999999987653122456788999999999999974
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
+.+|++++.|++|+|||+...... ....++..+.....|.+++|+|++. +|++++.|+ |
T Consensus 219 ~~~las~s~D~~v~iWd~~~~~~~-------------------~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v 278 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQDNEQGP-------------------WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKV 278 (297)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSC-------------------CEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCE
T ss_pred ceEEEEEECCCcEEEEEeCCCCCc-------------------cceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcE
Confidence 589999999999999999764210 0001111122234799999999996 667777777 9
Q ss_pred eEEeee
Q 039302 463 NILMPS 468 (479)
Q Consensus 463 ~iw~~~ 468 (479)
+||+..
T Consensus 279 ~lw~~~ 284 (297)
T 2pm7_B 279 TLWKEN 284 (297)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=312.43 Aligned_cols=248 Identities=23% Similarity=0.372 Sum_probs=219.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. .+...++.+|...|.+++|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~---------------------~~~~~~l~~h~~~V~~v~~~ 159 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYET---------------------GDFERTLKGHTDSVQDISFD 159 (410)
T ss_dssp CEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTT---------------------CCCCEEECCCSSCEEEEEEC
T ss_pred EeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEeccCCcEEEEEEc
Confidence 4678999999999999998 7899999999999999987 67788999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.||+|++||+.+... ...+.+|...|.+++|+|++. +|++|+.|++|++||++++. ++..+.+
T Consensus 160 ~~~~-~l~sgs~D~~i~iwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~-~~~~~~~ 232 (410)
T 1vyh_C 160 HSGK-LLASCSADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY-CVKTFTG 232 (410)
T ss_dssp TTSS-EEEEEETTSCCCEEETTSSCE----EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC-EEEEEEC
T ss_pred CCCC-EEEEEeCCCeEEEEeCCCCce----eEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc-EEEEEeC
Confidence 9998 999999999999999977543 245788999999999999998 99999999999999999986 7788899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC-------------------
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE------------------- 383 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~------------------- 383 (479)
|...|.++.|+|++ .+|++|+.||.|++||+++.. ....+.+|...|.+++|+|..
T Consensus 233 h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 233 HREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 99999999999999 899999999999999999887 788999999999999999953
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+.+|++|+.|+.|++||++... .+....+| ..|++++|+|++. +|++++.|+
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~-------------------------~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~ 361 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGM-------------------------CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKT 361 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTE-------------------------EEEEEECCSSCEEEEEECSSSS-CEEEEETTTE
T ss_pred CCEEEEEeCCCeEEEEECCCCc-------------------------eEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCe
Confidence 4689999999999999998763 22222333 4699999999986 677788888
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
|++|++.+.
T Consensus 362 i~vwd~~~~ 370 (410)
T 1vyh_C 362 LRVWDYKNK 370 (410)
T ss_dssp EEEECCTTS
T ss_pred EEEEECCCC
Confidence 999988543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=300.23 Aligned_cols=216 Identities=21% Similarity=0.298 Sum_probs=186.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.......+|.+.|++|+|+|++ .+|++|+.||+|+|||+.. .+++.++.+|...|+++
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~---------------------~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQ---------------------QVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred EeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEcCcCCceEEE
Confidence 3445677999999999999999 7899999999999999987 67788999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|++++..+|++|+.||+|++||++++..... .....|...+.+++|+|++..+|++|+.||+|+|||+++++ ++..
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~ 252 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLS 252 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEE
T ss_pred EecCCCCCceeeeccccccccccccccceeee--eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-EEEE
Confidence 99999876899999999999999987654332 22345667899999999887799999999999999999885 7888
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|...|++++|+|++..+||+|+.|++|+|||+++.+ +..+.+|...|++|+|+|++..+|+++|.|++|++|
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-----~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-----LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-----EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 999999999999999987799999999999999998765 456789999999999999887889999999999999
Q ss_pred ECCCCC
Q 039302 400 DLSLEK 405 (479)
Q Consensus 400 dl~~~~ 405 (479)
++....
T Consensus 328 ~v~~~~ 333 (344)
T 4gqb_B 328 VVPTEP 333 (344)
T ss_dssp ECCC--
T ss_pred ECCCCC
Confidence 998763
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=298.53 Aligned_cols=256 Identities=18% Similarity=0.321 Sum_probs=219.4
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
-.+...+.+|.+.|++++|+|.++.+|+||+.||+|++|++...... ...++..+.+|...|.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~ 70 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFKGHSHIVQD 70 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEECCSSCEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEeCCcccEEE
Confidence 34556788999999999999988789999999999999998652111 13456789999999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++. +|++|+.|++|++||+.++.. ...+.+|...|.+++|+|++. +|++|+.|++|++||++.. ++.
T Consensus 71 ~~~s~dg~-~l~s~s~D~~v~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~--~~~ 142 (319)
T 3frx_A 71 CTLTADGA-YALSASWDKTLRLWDVATGET----YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ--CLA 142 (319)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC--EEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEECCCCCe----eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--eEE
Confidence 99999998 999999999999999987644 245789999999999999998 9999999999999999753 677
Q ss_pred EEecCCCCEEEEEEcCCC-----CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 319 SFKAHNADVNVISWNRLA-----SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~-----~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+.+|...|.++.|.|.. ..+|++|+.|+.|++||++... ....+.+|..+|++++|+|++ .+|++|+.|
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~d 217 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDG-TLIASAGKD 217 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTS-SEEEEEETT
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCC-CEEEEEeCC
Confidence 888999999999999854 2489999999999999999877 788899999999999999955 999999999
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
++|+|||+... +.+....++..|.+++|+|++. ++++++.+++++|.+..
T Consensus 218 g~i~iwd~~~~-------------------------~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~i~v~~~~~ 267 (319)
T 3frx_A 218 GEIMLWNLAAK-------------------------KAMYTLSAQDEVFSLAFSPNRY-WLAAATATGIKVFSLDP 267 (319)
T ss_dssp CEEEEEETTTT-------------------------EEEEEEECCSCEEEEEECSSSS-EEEEEETTEEEEEEETT
T ss_pred CeEEEEECCCC-------------------------cEEEEecCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEeCc
Confidence 99999999876 3344444557899999999985 77777778899998643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=296.44 Aligned_cols=247 Identities=19% Similarity=0.279 Sum_probs=207.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|...|.+++|+|++ .+|++|+.||.|++|++..... .......+.+|...|.++.|+
T Consensus 91 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~ 152 (340)
T 1got_B 91 HAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG-----------------NVRVSRELAGHTGYLSCCRFL 152 (340)
T ss_dssp EEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSB-----------------SCEEEEEEECCSSCEEEEEEE
T ss_pred eEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCC-----------------cceeEEEecCCCccEEEEEEC
Confidence 4567899999999999998 7899999999999999976211 123456788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+++ .|++|+.|+.|++||+.++.. ...+.+|...|.+++|+|++. +|++|+.||+|++||++++. +...+.+
T Consensus 153 ~~~--~l~s~s~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~-~~~~~~~ 224 (340)
T 1got_B 153 DDN--QIVTSSGDTTCALWDIETGQQ----TTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM-CRQTFTG 224 (340)
T ss_dssp ETT--EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS-EEEEECC
T ss_pred CCC--cEEEEECCCcEEEEECCCCcE----EEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe-eEEEEcC
Confidence 875 699999999999999987543 245778999999999999998 99999999999999999885 7788899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
|...|++++|+|++ .+|++|+.||+|++||++... .+..+.. +...|++++|+|++ .+|++|+.|+.|++||
T Consensus 225 h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 225 HESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----ELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWD 298 (340)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE----EEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred CcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCc----EEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEE
Confidence 99999999999999 899999999999999999876 5666543 33579999999965 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+..... ...+..| ...|.+++|+|++. +|++++.|+ |+||+
T Consensus 299 ~~~~~~----------------------~~~~~~h--~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADR----------------------AGVLAGH--DNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCE----------------------EEEEECC--SSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred cccCcE----------------------eeEeecC--CCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence 987631 0122222 35799999999985 778888887 99995
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=297.20 Aligned_cols=253 Identities=15% Similarity=0.236 Sum_probs=217.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ...+..+..|...|.+++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~---------------------~~~~~~~~~~~~~v~~~~ 104 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYT---------------------TNKVHAIPLRSSWVMTCA 104 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEECSSSCEEEEE
T ss_pred hheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CCcceEeecCCccEEEEE
Confidence 345788999999999999998 7899999999999999887 567788889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.|+.|++|++.+..........+.+|.+.|.++.|++++ .+++++.|++|++||++++. ++..+
T Consensus 105 ~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~-~~~~~ 180 (340)
T 1got_B 105 YAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQ-QTTTF 180 (340)
T ss_dssp ECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTE-EEEEE
T ss_pred ECCCCC-EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCc-EEEEE
Confidence 999998 999999999999999977543222224567899999999999876 48999999999999999875 77788
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.+|...|++++|+|++ .+|++|+.||.|++||+++.. ++..+.+|...|++++|+|++ .+|++|+.|++|++||
T Consensus 181 ~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCe----eEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEE
Confidence 9999999999999998 899999999999999999887 789999999999999999965 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++.... ...+.|..+ ..|++++|+|++. +|++++.|+ |++|++.+
T Consensus 255 ~~~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 255 LRADQE-----------------------LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp TTTTEE-----------------------EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred CCCCcE-----------------------EEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEccc
Confidence 987631 112333322 3699999999996 777777777 99998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-37 Score=301.71 Aligned_cols=301 Identities=19% Similarity=0.241 Sum_probs=236.3
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+. .+|++|+ .++.|.||++.
T Consensus 66 ~~~V~~~~~sp~~-----------~~l~s~s-----~D~~v~iWd~~--------------------------------- 96 (380)
T 3iz6_a 66 SGKVYSLDWTPEK-----------NWIVSAS-----QDGRLIVWNAL--------------------------------- 96 (380)
T ss_dssp SSCEEEEEECTTS-----------SCEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred ccEEEEEEEcCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 3456677787763 2477763 67899999772
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
.......+..|...|.+++|+|++ .+||+|+.|+.|+||++....... ........+
T Consensus 97 --------~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~--------------~~~~~~~~~ 153 (380)
T 3iz6_a 97 --------TSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD--------------GNMPVSRVL 153 (380)
T ss_dssp --------TTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC--------------CSSTTCCBC
T ss_pred --------CCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc--------------CCccceeec
Confidence 223345677899999999999999 789999999999999997631110 012344567
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC-CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 230 GGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 230 ~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
.+|...+.++.|+|.+..+|++|+.|++|++||+.++...... .....+|...|.+++|++.+.++|++|+.||+|++|
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~w 233 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence 8999999999999987668999999999999999886543221 122367999999999988555599999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-------CCeEEEEEeC
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-------HPVTSIEWSP 381 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-------~~I~~v~~sp 381 (479)
|++....++..+.+|...|++++|+|++ .+|++|+.||+|++||++++. .+..+..+. ..|++++|+|
T Consensus 234 d~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 234 DLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH----QLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp ETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE----EEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred ECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc----EEEEecccccccccccCceEEEEECC
Confidence 9996655778889999999999999999 899999999999999999887 677665543 3489999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~d 460 (479)
++ .+|++|+.||.|++||+...... ..+.....+| ..|++++|+|++. +|++++.|
T Consensus 309 ~g-~~l~~g~~dg~i~vwd~~~~~~~---------------------~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D 365 (380)
T 3iz6_a 309 SG-RLLFAGYSNGDCYVWDTLLAEMV---------------------LNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWD 365 (380)
T ss_dssp SS-SEEEEECTTSCEEEEETTTCCEE---------------------EEECCSCSSCCCCCCEEEECSSSS-EEEEECTT
T ss_pred CC-CEEEEEECCCCEEEEECCCCceE---------------------EEEecccCCCCCceEEEEECCCCC-EEEEeeCC
Confidence 65 99999999999999999766310 0000011233 4699999999996 88889988
Q ss_pred C-ceEEeeecc
Q 039302 461 G-FNILMPSNI 470 (479)
Q Consensus 461 g-i~iw~~~~~ 470 (479)
+ |+||++..-
T Consensus 366 ~~i~iW~~~~~ 376 (380)
T 3iz6_a 366 KNLKIWAFSGH 376 (380)
T ss_dssp SCEEEEECCSS
T ss_pred CCEEEEecCCC
Confidence 8 999998653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=292.64 Aligned_cols=287 Identities=20% Similarity=0.259 Sum_probs=230.9
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+. .+|++|. .++.|.||+..
T Consensus 64 ~~~V~~~~~s~d~-----------~~l~s~s-----~Dg~v~vWd~~--------------------------------- 94 (354)
T 2pbi_B 64 GNKVLCMDWCKDK-----------RRIVSSS-----QDGKVIVWDSF--------------------------------- 94 (354)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred CCeEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 3456677887763 2577763 78899999762
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
..........|...|.+++|+|++ .++|+|+.|+.+++|++....... .......+
T Consensus 95 --------~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~---------------~~~~~~~~ 150 (354)
T 2pbi_B 95 --------TTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNEN---------------MAAKKKSV 150 (354)
T ss_dssp --------TCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCC---------------SGGGCEEE
T ss_pred --------CCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccccc---------------ccccceee
Confidence 112234566789999999999999 789999999999999987521110 12345667
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEE
Q 039302 230 GGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIW 308 (479)
Q Consensus 230 ~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iw 308 (479)
.+|...|.+++|+|++. .|++|+.||+|++||+.++.. ...+.+|...|.+++|+|.. .++|++|+.||+|++|
T Consensus 151 ~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQL----LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp EECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred eccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeE----EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 78999999999999997 999999999999999987654 24578899999999998853 2499999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--CCCeEEEEEeCCCCCE
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--KHPVTSIEWSPHEGST 386 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~~~I~~v~~sp~~~~~ 386 (479)
|+++++ ++..+..|...|++++|+|++ .+|++|+.|++|++||++... .+..+..+ ...+++++|+|++ .+
T Consensus 226 d~~~~~-~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~----~~~~~~~~~~~~~~~~~~~s~~g-~~ 298 (354)
T 2pbi_B 226 DMRSGQ-CVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR----EVAIYSKESIIFGASSVDFSLSG-RL 298 (354)
T ss_dssp ETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE----EEEEECCTTCCSCEEEEEECTTS-SE
T ss_pred ECCCCc-EEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc----EEEEEcCCCcccceeEEEEeCCC-CE
Confidence 999986 778889999999999999999 899999999999999999876 55555543 4578999999965 99
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
|++|+.|+.|++||+.... .+.....+...|++++|+|++. +|++++.|+ |+||
T Consensus 299 l~~g~~d~~i~vwd~~~~~------------------------~~~~l~~h~~~v~~l~~spdg~-~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 299 LFAGYNDYTINVWDVLKGS------------------------RVSILFGHENRVSTLRVSPDGT-AFCSGSWDHTLRVW 353 (354)
T ss_dssp EEEEETTSCEEEEETTTCS------------------------EEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEE
T ss_pred EEEEECCCcEEEEECCCCc------------------------eEEEEECCCCcEEEEEECCCCC-EEEEEcCCCCEEec
Confidence 9999999999999997763 1122222235799999999996 788888888 9998
Q ss_pred e
Q 039302 466 M 466 (479)
Q Consensus 466 ~ 466 (479)
.
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=294.63 Aligned_cols=261 Identities=18% Similarity=0.291 Sum_probs=196.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+|.+.|++++|+|++ .+||+|+.||+|+||++....... ....++..+.+|...|++++|+|++.
T Consensus 56 ~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~g~ 120 (330)
T 2hes_X 56 AHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT--------------FEMDLLAIIEGHENEVKGVAWSNDGY 120 (330)
T ss_dssp CCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---------------------CCCEEEEEEC----CEEEEEECTTSC
T ss_pred CccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc--------------ccceeEEEEcCCCCcEEEEEECCCCC
Confidence 399999999999998 789999999999999986421000 01345677899999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEecCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNA 325 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~~h~~ 325 (479)
+|++|+.|++|++||+............+.+|...|.+++|+|++. +|++|+.|++|+|||++... .++..+.+|..
T Consensus 121 -~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~ 198 (330)
T 2hes_X 121 -YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198 (330)
T ss_dssp -EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred -EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCC
Confidence 9999999999999999543221111244678999999999999998 99999999999999998753 36777889999
Q ss_pred CEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCC----ceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 326 DVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGD----SVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 326 ~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~----~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.|.+++|+|++ ..+|++|+.|++|++||++...... .....+.. |...|++++|++ + .+|++++.||.|+||
T Consensus 199 ~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw 276 (330)
T 2hes_X 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVY 276 (330)
T ss_dssp CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEE
T ss_pred cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEEEeCCCEEEEE
Confidence 99999999983 2689999999999999997652111 13445554 999999999997 4 589999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-C-CeeeEEEeCC-CCcEEEEEcCCC-ceEEeee
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-K-DLKELHWHTQ-VPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~-~V~~v~w~p~-~~~ll~s~~~dg-i~iw~~~ 468 (479)
++..... ..+.....+| . .|.+++|+|. +..+|++++.|| |+||++.
T Consensus 277 ~~~~~~~----------------------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 277 EEVDGEW----------------------KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTEE----------------------EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EcCCCce----------------------EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 9865410 0111111223 3 6999999994 335889999998 9999875
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=295.69 Aligned_cols=254 Identities=20% Similarity=0.285 Sum_probs=214.7
Q ss_pred CceeEEEEecCCcceeEEEEecCC---CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQN---PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~---~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
..++.....+|.+.|++++|+|++ ..+|+||+.||+|+||++... .......+.+|..
T Consensus 21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-------------------~~~~~~~l~gh~~ 81 (321)
T 3ow8_A 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-------------------RLDLQWSLEGHQL 81 (321)
T ss_dssp CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSS
T ss_pred hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-------------------CeeeeeeeccCCC
Confidence 345545667999999999999863 368999999999999998752 1233457889999
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|.+++|++++. ++++|+.|++|++||+.++... ..+..|...+.+++|+|++. +|++|+.||.|++||+++++
T Consensus 82 ~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~----~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 82 GVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQI----KSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp CEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEE----EEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCS
T ss_pred CEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEE----EEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCc
Confidence 999999999998 9999999999999999875442 34567788899999999998 99999999999999999886
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
....+..|...|.+++|+|++ .+|++|+.||.|++||+++++ ++..+.+|..+|++++|+|++ .+|++|+.|+
T Consensus 156 -~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg 228 (321)
T 3ow8_A 156 -KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFSPDS-QLLVTASDDG 228 (321)
T ss_dssp -EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE----EEEEECCCSSCCCEEEECTTS-CEEEEECTTS
T ss_pred -eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----EEEEEcccCCceeEEEEcCCC-CEEEEEcCCC
Confidence 667788899999999999999 899999999999999999887 789999999999999999965 8999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.|+|||++... +.....+| ..|.+++|+|++. +|++++.|+ |++|++.+
T Consensus 229 ~i~iwd~~~~~-------------------------~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 229 YIKIYDVQHAN-------------------------LAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp CEEEEETTTCC-------------------------EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred eEEEEECCCcc-------------------------eeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCC
Confidence 99999998763 22333334 4699999999986 777788777 99999754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=284.19 Aligned_cols=246 Identities=21% Similarity=0.365 Sum_probs=207.7
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|...|++++|+|++ .+|++|+.||.|++||+.. .+.+..+.+|...|.+++|
T Consensus 58 ~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~---------------------~~~~~~~~~~~~~v~~~~~ 115 (312)
T 4ery_A 58 EKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSS---------------------GKCLKTLKGHSNYVFCCNF 115 (312)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEEE
T ss_pred chhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEcCCCCCEEEEEE
Confidence 34677999999999999998 7889999999999999987 5778889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF- 320 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~- 320 (479)
+|++. +|++|+.||.|++||+.++... ..+..|..+|.+++|+|++. +|++++.||.|++||+++++ .+..+
T Consensus 116 ~~~~~-~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~-~~~~~~ 188 (312)
T 4ery_A 116 NPQSN-LIVSGSFDESVRIWDVKTGKCL----KTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ-CLKTLI 188 (312)
T ss_dssp CSSSS-EEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-EEEEEC
T ss_pred cCCCC-EEEEEeCCCcEEEEECCCCEEE----EEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-eeeEEe
Confidence 99998 9999999999999999875442 34678999999999999998 99999999999999999886 44443
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE--EEEEeCCCCCEEEEEeCCCcEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT--SIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~--~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..+...+.+++|+|++ .+|++++.||.|++||+++.+ .+..+.+|...+. ...|++.++.+|++|+.||.|++
T Consensus 189 ~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp CSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred ccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 5567789999999999 899999999999999999887 7888888876543 34566556789999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEc--CCC-ceEEee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTA--ADG-FNILMP 467 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~--~dg-i~iw~~ 467 (479)
||+.... ++....+| ..|.+++|+|+++ ++++++ .|+ |++|+.
T Consensus 264 wd~~~~~-------------------------~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 264 WNLQTKE-------------------------IVQKLQGHTDVVISTACHPTEN-IIASAALENDKTIKLWKS 310 (312)
T ss_dssp EETTTCC-------------------------EEEEECCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEEC
T ss_pred EECCCch-------------------------hhhhhhccCCcEEEEeecCcCC-ceEEEEccCCccEEEecC
Confidence 9998763 33333333 4699999999996 666664 466 999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=299.35 Aligned_cols=260 Identities=18% Similarity=0.260 Sum_probs=215.5
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.......+.+|.+.|++++|+|++ .+|+||+.||+|+|||+.. .+.+..+.+|...|.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~---------------------~~~~~~~~~h~~~v~ 112 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALT---------------------SQKTHAIKLHCPWVM 112 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTT---------------------TEEEEEEECCCTTCC
T ss_pred eeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CccceEEecCCCCEE
Confidence 344556789999999999999998 7889999999999999987 566788899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc---cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT---WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
+++|+|++. +|++|+.|+.|++|++.+... .......+.+|.+.|.++.|+|++...|++|+.|++|++||+++++
T Consensus 113 ~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 113 ECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCEECTTSS-EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EEEECCCCC-EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 999999998 999999999999999975321 1112345789999999999999877689999999999999999986
Q ss_pred ceeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 315 SALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.+..+ .+|...|.+++|++.++.+|++|+.||.|++||++.... ++..+.+|...|++++|+|++ .+|++
T Consensus 192 -~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---~~~~~~~h~~~v~~v~~~p~~-~~l~s 266 (380)
T 3iz6_a 192 -RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINSVKFFPDG-QRFGT 266 (380)
T ss_dssp -EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---CCEEECCCSSCCCEEEECTTS-SEEEE
T ss_pred -EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---ceEEECCcCCCeEEEEEecCC-CeEEE
Confidence 45444 578999999999985559999999999999999996543 788999999999999999965 99999
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-----CCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-----QKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-----~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
|+.|++|++||++..... ..+..+.. ...|++++|+|++. +|++++.+| |+
T Consensus 267 ~s~D~~i~lwd~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~ 323 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGHQL----------------------QVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCY 323 (380)
T ss_dssp ECSSSCEEEEETTTTEEE----------------------EEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEE
T ss_pred EcCCCeEEEEECCCCcEE----------------------EEecccccccccccCceEEEEECCCCC-EEEEEECCCCEE
Confidence 999999999999876311 11111110 12489999999996 677777777 99
Q ss_pred EEeee
Q 039302 464 ILMPS 468 (479)
Q Consensus 464 iw~~~ 468 (479)
+|++.
T Consensus 324 vwd~~ 328 (380)
T 3iz6_a 324 VWDTL 328 (380)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=282.06 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=206.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|...|++++|+|++ .+|++|+.||+|+|||+.. .+.+..+.+|...|.+++|
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~---------------------~~~~~~~~~h~~~v~~~~~ 115 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVAT---------------------GETYQRFVGHKSDVMSVDI 115 (319)
T ss_dssp EEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEEEE
T ss_pred ceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCC---------------------CCeeEEEccCCCcEEEEEE
Confidence 34678999999999999999 7889999999999999987 5677889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-----cEEEEEeCCCcEEEEEcCCCCce
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-----DVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-----~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
+|++. +|++|+.|++|++||+... . ...+.+|...|.++.|+|... ..|++++.|++|++||+++.+ .
T Consensus 116 ~~~~~-~l~s~s~D~~i~vwd~~~~-~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~ 188 (319)
T 3frx_A 116 DKKAS-MIISGSRDKTIKVWTIKGQ-C----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-I 188 (319)
T ss_dssp CTTSC-EEEEEETTSCEEEEETTSC-E----EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-E
T ss_pred cCCCC-EEEEEeCCCeEEEEECCCC-e----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-h
Confidence 99998 9999999999999999642 2 245678999999999999642 389999999999999999875 6
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
...+.+|...|++++|+|++ .+|++|+.||.|+|||+++.+ ++..+.. ...|.+++|+|++ .+|++++. +.+
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~-~~la~~~~-~~i 260 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNR-YWLAAATA-TGI 260 (319)
T ss_dssp EEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSS-SEEEEEET-TEE
T ss_pred heeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCC-CEEEEEcC-CCc
Confidence 67788999999999999999 899999999999999999887 7777775 4689999999965 88888775 459
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCc-eEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQ-LLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++|++....... ...+. ..+...+...|.+++|+|++. +|++++.|+ |+||++.+
T Consensus 261 ~v~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 261 KVFSLDPQYLVD-----------------DLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEETTEEEEE-----------------EECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEE
T ss_pred EEEEeCcCeeee-----------------ccCccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEee
Confidence 999997642100 00000 000011123689999999996 777787777 99999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=290.57 Aligned_cols=255 Identities=18% Similarity=0.239 Sum_probs=215.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+||||+.||+|+|||... .+....+..|...|.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~---------------------~~~~~~~~~~~~~v~~~~ 113 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFT---------------------TNKEHAVTMPCTWVMACA 113 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECSSSCCCEEE
T ss_pred EEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CCcceEEecCCCCEEEEE
Confidence 345788999999999999998 7899999999999999876 556677888999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|+|++. .|++|+.|+.|++|++..... .......+.+|...|.+++|+|++. .|++++.||+|++||+++++ ++.
T Consensus 114 ~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~-~~~ 190 (354)
T 2pbi_B 114 YAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQ-LLQ 190 (354)
T ss_dssp ECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC-EEE
T ss_pred ECCCCC-EEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCe-EEE
Confidence 999998 999999999999999865321 1112344668999999999999998 89999999999999999986 778
Q ss_pred EEecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 319 SFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+.+|...|.+++|+|.. +.+|++|+.||.|++||++++. ++..+.+|...|++++|+|++ .+|++|+.|++|+
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRYYPSG-DAFASGSDDATCR 265 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEE
Confidence 889999999999998853 3799999999999999999987 889999999999999999965 9999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++.... ...+.+.. ...+.+++|+|++. +|++++.|+ |++|++.+
T Consensus 266 lwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 266 LYDLRADRE-----------------------VAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp EEETTTTEE-----------------------EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred EEECCCCcE-----------------------EEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCC
Confidence 999987631 11222221 23689999999996 677777776 99998754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=283.27 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=203.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .++++|+.||+|+|||+.. .+.+..+.+|...|++++
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~---------------------~~~~~~~~~h~~~v~~v~ 125 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRT---------------------GTTYKRFVGHQSEVYSVA 125 (343)
T ss_dssp EEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTS---------------------SCEEEEEECCCSCEEEEE
T ss_pred ccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC---------------------CcEEEEEcCCCCcEEEEE
Confidence 345678999999999999998 7889999999999999987 567788999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC---------cEEEEEeCCCcEEEEEcC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES---------DVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~---------~~l~s~s~dg~I~iwD~~ 311 (479)
|+|++. +|++|+.|+.|++||+..... .......+|...|.+++|+|.+. .+|++++.||+|++||.+
T Consensus 126 ~sp~~~-~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 202 (343)
T 2xzm_R 126 FSPDNR-QILSAGAEREIKLWNILGECK--FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202 (343)
T ss_dssp ECSSTT-EEEEEETTSCEEEEESSSCEE--EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred ECCCCC-EEEEEcCCCEEEEEeccCCce--eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence 999998 999999999999999974221 11233457899999999999872 389999999999999954
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
. .....+.+|...|++++|+|++ .+|++|+.||.|++||++.... +...+. +...|++++|+|++ .+|+ ++
T Consensus 203 ~--~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~---~~~~~~-~~~~v~~v~~sp~~-~~la-~~ 273 (343)
T 2xzm_R 203 F--QIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTY---PQREFD-AGSTINQIAFNPKL-QWVA-VG 273 (343)
T ss_dssp T--EEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSS---CSEEEE-CSSCEEEEEECSSS-CEEE-EE
T ss_pred C--ceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcc---cceeec-CCCcEEEEEECCCC-CEEE-EE
Confidence 3 3566788999999999999999 8999999999999999965543 444443 56679999999964 6665 45
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.|+.|++|++....... .......+........++ ..|.+++|+|++. +|++++.|| |++|++.+
T Consensus 274 ~d~~v~iw~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 274 TDQGVKIFNLMTQSKAP------------VCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ESSCEEEEESSSCCSCS------------EEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEE
T ss_pred CCCCEEEEEeCCCCCCc------------eEEeecCcchhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEc
Confidence 68889999997653210 000000000000111133 3699999999996 667777777 99999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=296.00 Aligned_cols=254 Identities=16% Similarity=0.205 Sum_probs=202.0
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeC------CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWAD------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
..|.+.|++|+|+|+| .+||+|+. ||.|++|+...... .........+|...|+++
T Consensus 39 ~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~-----------------~~~~~~~~~~~~~~V~~~ 100 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAP-----------------NESLCTAGVQTEAGVTDV 100 (357)
T ss_dssp -CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC--------------------CGGGCSEEEECSSCEEEE
T ss_pred ccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCc-----------------ceeEecccCCCCCCEEEE
Confidence 4699999999999999 78889987 78899998866211 112233455788899999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|++ .+++++.||+|+|||+.++...........+|...|++++|+|++. +|++|+.||+|+|||+++++ ++..
T Consensus 101 ~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~-~~~~ 176 (357)
T 4g56_B 101 AWVSEK--GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKA-VLKS 176 (357)
T ss_dssp EEETTT--EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTE-EEEE
T ss_pred EEcCCC--CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCc-EEEE
Confidence 999986 5778888999999999876543322233458999999999999998 99999999999999999875 7788
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE--EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA--HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~--~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.+|...|++++|++++..+|++++.||.|++||+++.+ ++. .+..|...+++++|+|+++.+|++|+.|+.|+
T Consensus 177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK----PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS----CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc----eeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence 899999999999999987799999999999999999887 333 34457788999999998888999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++... .+.....+...|++++|+|++..+|++++.|+ |+||++..
T Consensus 253 ~wd~~~~~------------------------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 253 LVNIKNPD------------------------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp EEESSCGG------------------------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred EEECCCCc------------------------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 99998763 11222222357999999999877899999988 99998754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=289.62 Aligned_cols=248 Identities=18% Similarity=0.320 Sum_probs=202.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+...|++++|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...|++++|+|++.
T Consensus 121 ~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~p~~~ 178 (393)
T 1erj_A 121 SSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIEN---------------------RKIVMILQGHEQDIYSLDYFPSGD 178 (393)
T ss_dssp CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCceeEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEccCCCCEEEEEEcCCCC
Confidence 455679999999999 7889999999999999987 566788999999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCceeeEE-----
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVDGNIAIWDTRVGKSALMSF----- 320 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~----- 320 (479)
+|++|+.|++|++||+.++.... ...+...+.+++|+| ++. +|++|+.||.|++||++++. .+..+
T Consensus 179 -~l~s~s~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~ 250 (393)
T 1erj_A 179 -KLVSGSGDRTVRIWDLRTGQCSL-----TLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGF-LVERLDSENE 250 (393)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEE-----EEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCC-EEEEEC----
T ss_pred -EEEEecCCCcEEEEECCCCeeEE-----EEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCc-EEEeeccccc
Confidence 99999999999999998754321 223567899999999 555 99999999999999999875 44444
Q ss_pred --ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--------CCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 321 --KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 321 --~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.+|...|.+++|+|++ .+|++|+.||.|++||++.... ...+...+.+|...|++++|+|++ .+|++|
T Consensus 251 ~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg 328 (393)
T 1erj_A 251 SGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSG 328 (393)
T ss_dssp --CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEE
T ss_pred CCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEE
Confidence 5789999999999999 8999999999999999986431 122566788999999999999965 899999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCC-----CcEEEEEcCCC-ce
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQV-----PGMIVSTAADG-FN 463 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~-----~~ll~s~~~dg-i~ 463 (479)
+.|+.|++||+.... .+....+| ..|.+++|++.. ..+|++++.|+ |+
T Consensus 329 s~D~~v~iwd~~~~~-------------------------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 329 SKDRGVLFWDKKSGN-------------------------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp ETTSEEEEEETTTCC-------------------------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred eCCCeEEEEECCCCe-------------------------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 999999999998763 22223333 479999998731 25899999998 99
Q ss_pred EEeeeccC
Q 039302 464 ILMPSNIQ 471 (479)
Q Consensus 464 iw~~~~~~ 471 (479)
||++....
T Consensus 384 iW~~~~~~ 391 (393)
T 1erj_A 384 IWKYKKIA 391 (393)
T ss_dssp EEEEEEC-
T ss_pred ECcccccC
Confidence 99987653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=294.34 Aligned_cols=262 Identities=19% Similarity=0.312 Sum_probs=202.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++++|+|++ .+||+|+.|++|+|||+... ....+..+.+|...|++++
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~-------------------~~~~~~~l~gH~~~V~~v~ 64 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNG-------------------GQILIADLRGHEGPVWQVA 64 (316)
T ss_dssp ---------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETT-------------------EEEEEEEEECCSSCEEEEE
T ss_pred eeeecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCC-------------------CcEEEEEEcCCCccEEEEE
Confidence 445667999999999999998 78999999999999998761 1134577899999999999
Q ss_pred eCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-
Q 039302 241 WNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS- 315 (479)
Q Consensus 241 ~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~- 315 (479)
|++. +. +|++|+.|++|++||+.++.... ...+.+|...|++++|+|+ +. +|++|+.||+|++||++....
T Consensus 65 ~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~--~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 65 WAHPMYGN-ILASCSYDRKVIIWREENGTWEK--SHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp ECCGGGSS-CEEEEETTSCEEEECCSSSCCCE--EEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCE
T ss_pred eCCCCCCC-EEEEEECCCEEEEEECCCCcceE--EEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCc
Confidence 9864 55 99999999999999997643211 1346789999999999998 55 899999999999999987632
Q ss_pred -eeeEEecCCCCEEEEEEcCCC----------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 316 -ALMSFKAHNADVNVISWNRLA----------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 316 -~~~~~~~h~~~v~~l~~~p~~----------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
....+.+|...|++++|+|+. ..+|++|+.|+.|++||++.... ..++..+.+|..+|++++
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECCBCCSSCEEEEE
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeecccCCCceEEEE
Confidence 234457899999999999973 26899999999999999975421 125677899999999999
Q ss_pred EeCCC---CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 379 WSPHE---GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 379 ~sp~~---~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
|+|++ +.+|++++.|++|+||++...... .....++..| ...|.+++|+|++. +|+
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~------------------~~~~~~~~~~--~~~v~~v~~sp~g~-~la 278 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSN------------------TWSPKLLHKF--NDVVWHVSWSITAN-ILA 278 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCC------------------CCBCCEEEEC--SSCEEEEEECTTTC-CEE
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCcccc------------------chhhhhhhcC--CCcEEEEEEcCCCC-EEE
Confidence 99964 379999999999999999763210 1112334444 35799999999996 667
Q ss_pred EEcCCC-ceEEeee
Q 039302 456 STAADG-FNILMPS 468 (479)
Q Consensus 456 s~~~dg-i~iw~~~ 468 (479)
+++.|+ |++|+..
T Consensus 279 s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 279 VSGGDNKVTLWKES 292 (316)
T ss_dssp EEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEEC
Confidence 777776 9999975
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=307.08 Aligned_cols=343 Identities=11% Similarity=0.056 Sum_probs=235.6
Q ss_pred cccccCceeeEEEeeCCCCCCcccCCceEEEEEeec--------------CCCCCCceEEEEEeeecCCccccCCCCCCC
Q 039302 66 AFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQ--------------AEKPSWNSIGVFKVSNISGKRRELVPNKPA 131 (479)
Q Consensus 66 ~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~--------------~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~ 131 (479)
.+.++.+..+++|.|+..+..+.. ...+|++|+. ++++.++.|.||++..-
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~--~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~------------- 193 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGK--DIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS------------- 193 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCS--SEEEEEEEEEC------------------CEEEEEEEEETT-------------
T ss_pred EEECCCceeEEEecccCCCCccCc--CCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC-------------
Confidence 444578888999999853211000 1367777773 44567889999988410
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCC-----CcEEEEEeCCceEEEEeCCCCcccc
Q 039302 132 TGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN-----PHICASWADTGHVQVWDFRSHLNAL 206 (479)
Q Consensus 132 ~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~-----~~~lat~s~dg~V~iwd~~~~~~~~ 206 (479)
.........+.+|.+.|++|+|+|++ ..+||+++.||+|+|||+.......
T Consensus 194 ------------------------~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 194 ------------------------TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------------------TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred ------------------------CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 00122233466788999999999972 3699999999999999997632110
Q ss_pred cccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEE
Q 039302 207 AESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDL 286 (479)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l 286 (479)
... .....+..++.+|...|++++|++.+ .|++|+.||+|++||+.++... ...+.+|...|++|
T Consensus 250 ~~~----------~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~---~~~~~~H~~~V~sv 314 (524)
T 2j04_B 250 HVF----------KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVP---SFYDQVHDSYILSV 314 (524)
T ss_dssp SEE----------ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSC---SEEEECSSSCEEEE
T ss_pred ccc----------eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCc---eEEeecccccEEEE
Confidence 000 00134567889999999999999853 8999999999999999865321 23467899999999
Q ss_pred --EECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 039302 287 --QWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS 362 (479)
Q Consensus 287 --~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~ 362 (479)
.|+|++.++|||||.||+|+|||+++.+ +...+.+|.. .|.+++|+|++ ..|++++.|++|++||++...
T Consensus 315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~---- 388 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAF---- 388 (524)
T ss_dssp EEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTT----
T ss_pred EEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccc----
Confidence 5678773499999999999999999875 4555666653 58899999998 789999999999999999987
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChH-H-HHHHhh--hcccccCC-------------CC
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEE-E-EAEFKA--KTREQVNA-------------PE 425 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~-~-~~~~~~--~~~~~~~~-------------~~ 425 (479)
.+..+.+|...|++|+|+|++ .+|++|+.|++|++||+....... . ...... ........ ..
T Consensus 389 ~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~ 467 (524)
T 2j04_B 389 AVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVY 467 (524)
T ss_dssp CCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCC
T ss_pred cceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceec
Confidence 677888999999999999965 899999999999999986532110 0 000000 00000000 00
Q ss_pred CC---CCceEEeecCCCCeeeEEEeCCCC--cEEEEEcCCC-ceEEeeec
Q 039302 426 DL---PPQLLFIHQGQKDLKELHWHTQVP--GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 426 ~~---p~~l~~~h~g~~~V~~v~w~p~~~--~ll~s~~~dg-i~iw~~~~ 469 (479)
.. ...+.....+...|.+|+|+|+++ .++|+++.+| |+||++.-
T Consensus 468 ~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp C-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 00 111222222335799999999963 5899999988 99999753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=283.50 Aligned_cols=264 Identities=20% Similarity=0.286 Sum_probs=201.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cC-CCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GG-HKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~ 237 (479)
.+...+.+|.+.|+++.|+|+ +||+|+.||+|+|||+... ....+..+ .+ |...|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~-------------------~~~~~~~~~~~~h~~~v~ 62 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYD-------------------DFTLIDVLDETAHKKAIR 62 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSS-------------------CCEEEEEECTTCCCSCEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCC-------------------CeEEEEEEecCCccCCEE
Confidence 344578899999999999985 8999999999999999762 11233444 34 999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
+++|+|++. +|++|+.|++|+||++...... ......+.+|...|.+++|+|++. +|++|+.|++|+|||++...
T Consensus 63 ~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 63 SVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTC
T ss_pred EEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCC
Confidence 999999997 9999999999999998542210 011234678999999999999998 99999999999999996432
Q ss_pred ---ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC-CCEEEEE
Q 039302 315 ---SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-GSTLAVS 390 (479)
Q Consensus 315 ---~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-~~~las~ 390 (479)
.++..+.+|...|++++|+|++ .+|++|+.|++|++||++... ..++..+.+|...|++++|+|+. +.+|++|
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 2556778999999999999998 899999999999999987652 12688899999999999999963 4689999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE-Eeec-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL-FIHQ-GQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~h~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
+.|++|++||+....... ....... .... +...|.+++|++.+ +|++++.|+ |+||+.
T Consensus 218 s~D~~v~iw~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDD-----------------QQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEE 278 (330)
T ss_dssp ETTSCEEEEEEEEECTTS-----------------CEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEE
T ss_pred eCCCeEEEEEecCCCccc-----------------cceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEc
Confidence 999999999997642100 0000111 1111 23479999999764 677888887 999987
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
..
T Consensus 279 ~~ 280 (330)
T 2hes_X 279 VD 280 (330)
T ss_dssp ET
T ss_pred CC
Confidence 54
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=287.06 Aligned_cols=271 Identities=20% Similarity=0.343 Sum_probs=209.4
Q ss_pred eeEEEEecCCc-ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 160 ILQLRKVAHQG-CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 160 ~~~~~~~~H~~-~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
.+...+.+|.+ .|++++|+|++ .+||+|+.||+|+|||+..... ........+|...|.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~------------------~~~~~~~~~h~~~v~~ 66 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSW------------------ICKSVLSEGHQRTVRK 66 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEE------------------EEEEEECSSCSSCEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcc------------------eeeeeeccccCCcEEE
Confidence 34456789988 99999999999 7889999999999999876210 0011223689999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--e
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--A 316 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~ 316 (479)
++|+|++. +|++|+.|+.|+||++....... ...+.+|...|.+++|+|++. +|++|+.|++|++||++.... +
T Consensus 67 ~~~sp~g~-~l~s~s~D~~v~iw~~~~~~~~~--~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 67 VAWSPCGN-YLASASFDATTCIWKKNQDDFEC--VTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEEECCC-EEE--EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEECCCCC-EEEEEECCCcEEEEEccCCCeEE--EEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEE
Confidence 99999998 99999999999999987653211 245778999999999999998 999999999999999987642 4
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+..+..|...|++++|+|++ .+|++|+.|+.|++||++... ..+...+.+|...|++++|+|++ .+|++++.|++|
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v 218 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTV 218 (345)
T ss_dssp EEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred EEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeE
Confidence 55678899999999999999 899999999999999998764 12457889999999999999965 999999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCC-CceEEeec--CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP-PQLLFIHQ--GQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~l~~~h~--g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++....... ........+ ...+.... +...|.+++|+|.+. +|++++.|+ +++|+...
T Consensus 219 ~iW~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 219 RIWRQYLPGNEQ-----------GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EEEEEECTTCTT-----------CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECT
T ss_pred EEeccccCCCCc-----------cceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCC
Confidence 999975542110 000000000 01111212 224699999999986 555555555 99998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=279.28 Aligned_cols=256 Identities=23% Similarity=0.336 Sum_probs=214.5
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+...+.+|.+.|++++|+|++ .+||+|+.||.|+||++.. .+....+.+|...|.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~h~~~v~ 69 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD---------------------GKFEKTISGHKLGIS 69 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEE
T ss_pred CceeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCC---------------------cccchhhccCCCceE
Confidence 345667889999999999999998 7889999999999999876 566778899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|+|++. +|++|+.||.|++||+.++... ..+.+|...|.+++|+|++. +|++|+.||.|++||+++++ ++
T Consensus 70 ~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~-~~ 142 (312)
T 4ery_A 70 DVAWSSDSN-LLVSASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGK-CL 142 (312)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCC-EE
T ss_pred EEEEcCCCC-EEEEECCCCEEEEEECCCCcEE----EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCE-EE
Confidence 999999997 9999999999999999876542 45778999999999999998 99999999999999999875 67
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
..+..|...|.+++|+|++ .+|++|+.||.|++||+++.. .+..+ ..+..++..++|+|++ .+|++++.|+.|
T Consensus 143 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i 216 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTL 216 (312)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEE
T ss_pred EEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeE
Confidence 7888999999999999998 899999999999999999877 56555 4567789999999965 899999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++||++..... ..+..|..........|++.+..+|++++.|+ |++|++.+.
T Consensus 217 ~iwd~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 217 KLWDYSKGKCL----------------------KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EEEETTTTEEE----------------------EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EEEECCCCcEE----------------------EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 99999876310 11222322223344566655556889999888 999987543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=305.25 Aligned_cols=272 Identities=20% Similarity=0.264 Sum_probs=211.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+||+|+.||+|+|||+... .......+.+|...|.+++|+
T Consensus 53 ~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~-------------------~~~~~~~~~~~~~~v~~v~fs 112 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT-------------------THILKTTIPVFSGPVKDISWD 112 (611)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST-------------------TCCEEEEEECSSSCEEEEEEC
T ss_pred eEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCC-------------------cceeeEeecccCCceEEEEEC
Confidence 4677999999999999999 89999999999999998651 123456788999999999999
Q ss_pred CCCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 243 PVAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 243 ~~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|++. +|++++.+ +.|++||... . ...+.+|...|++++|+|++...|++|+.|++|++||.+..+ +..
T Consensus 113 ~dg~-~l~~~~~~~~~~~~v~~wd~~~--~----~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~ 184 (611)
T 1nr0_A 113 SESK-RIAAVGEGRERFGHVFLFDTGT--S----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKS 184 (611)
T ss_dssp TTSC-EEEEEECCSSCSEEEEETTTCC--B----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEE
T ss_pred CCCC-EEEEEECCCCceeEEEEeeCCC--C----cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-Eee
Confidence 9998 88888765 4789998532 2 245789999999999999988679999999999999998764 677
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-------cCCCCeEEEEEeCCCCCEEEEEe
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-------YHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-------~h~~~I~~v~~sp~~~~~las~s 391 (479)
.+.+|...|++++|+|++ .+||+|+.|++|++||++++. .+..+. +|...|++++|+|++ .+|++++
T Consensus 185 ~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s 258 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASAS 258 (611)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEE
T ss_pred eeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc----EeeeeccccccccccCCCEEEEEECCCC-CEEEEEe
Confidence 889999999999999999 899999999999999999877 677774 799999999999965 9999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhccccc---CCC---------------CCCCCceEEeecCC-CCeeeEEEeCCCCc
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQV---NAP---------------EDLPPQLLFIHQGQ-KDLKELHWHTQVPG 452 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~---~~~---------------~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ 452 (479)
.|++|++||+.................... ... ............+| ..|++++|+|++.
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~- 337 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK- 337 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-
Confidence 999999999987532100000000000000 000 00001122222344 4799999999986
Q ss_pred EEEEEcCCC-ceEEeeec
Q 039302 453 MIVSTAADG-FNILMPSN 469 (479)
Q Consensus 453 ll~s~~~dg-i~iw~~~~ 469 (479)
+|++++.|+ |++|++.+
T Consensus 338 ~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 338 TLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCcEEEEECCC
Confidence 777888777 99999754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=281.79 Aligned_cols=257 Identities=18% Similarity=0.301 Sum_probs=207.7
Q ss_pred eeEEEEecCCcceeEEEE-----ecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC
Q 039302 160 ILQLRKVAHQGCVNRIRA-----MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~-----~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
.+...+.+|.+.|++++| ++.+..+|+||+.||+|+|||+....... ....+...+.+|..
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------~~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------YFGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--------------BSEEEEEEECCCSS
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--------------ccccccchhccCCC
Confidence 344568899999999999 66333799999999999999987521100 01245677899999
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|.+++|+|++. +|++|+.|++|++||+.++... ..+.+|...|.+++|+|++. +|++|+.|++|++||++..
T Consensus 78 ~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~~~----~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~- 150 (343)
T 2xzm_R 78 FVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTY----KRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE- 150 (343)
T ss_dssp CEEEEEECSSTT-EEEEEETTSEEEEEETTSSCEE----EEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-
T ss_pred ceEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEE----EEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-
Confidence 999999999998 9999999999999999876542 45778999999999999998 9999999999999999843
Q ss_pred ceeeEE---ecCCCCEEEEEEcCCCC---------cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 315 SALMSF---KAHNADVNVISWNRLAS---------CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 315 ~~~~~~---~~h~~~v~~l~~~p~~~---------~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
..... ..|...|.+++|+|.+. .+|++|+.||.|++||.+ .. ....+.+|...|++++|+|+
T Consensus 151 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~----~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 151 -CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ----IRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp -EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE----EEEEEECCSSCEEEEEECTT
T ss_pred -ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc----eeEEEcCccccceEEEECCC
Confidence 23333 37889999999999862 589999999999999943 33 67788999999999999996
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCc
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGF 462 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi 462 (479)
+ .+|++|+.|+.|++||+..... +...+.+. ..|.+++|+|++. +++++.++++
T Consensus 225 g-~~l~sgs~dg~v~iwd~~~~~~----------------------~~~~~~~~--~~v~~v~~sp~~~-~la~~~d~~v 278 (343)
T 2xzm_R 225 G-KYIATGGKDKKLLIWDILNLTY----------------------PQREFDAG--STINQIAFNPKLQ-WVAVGTDQGV 278 (343)
T ss_dssp S-SEEEEEETTCEEEEEESSCCSS----------------------CSEEEECS--SCEEEEEECSSSC-EEEEEESSCE
T ss_pred C-CEEEEEcCCCeEEEEECCCCcc----------------------cceeecCC--CcEEEEEECCCCC-EEEEECCCCE
Confidence 5 9999999999999999954421 12223232 4699999999985 6777777779
Q ss_pred eEEeeec
Q 039302 463 NILMPSN 469 (479)
Q Consensus 463 ~iw~~~~ 469 (479)
++|++..
T Consensus 279 ~iw~~~~ 285 (343)
T 2xzm_R 279 KIFNLMT 285 (343)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 9998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=291.46 Aligned_cols=262 Identities=19% Similarity=0.342 Sum_probs=216.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|.+.|++++|+|++ .+|++|+.||.|+||++..... ....+..+.+|...|.+++|+|+
T Consensus 63 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~ 124 (416)
T 2pm9_A 63 SLQVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANN-----------------AINSMARFSNHSSSVKTVKFNAK 124 (416)
T ss_dssp CCCCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTS-----------------CCCEEEECCCSSSCCCEEEECSS
T ss_pred EEecCCceEEEEECCCC-CeEEEEccCCeEEEeecccccc-----------------cccchhhccCCccceEEEEEcCC
Confidence 34689999999999998 6888999999999999986211 12467788899999999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCc-----cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 245 APGRLVSGDCNSCIHLWEPASDAT-----WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+..+|++|+.||.|++||+.+... .......+..|...|.+++|+|++..+|++++.||.|++||+++.+ .+..
T Consensus 125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~ 203 (416)
T 2pm9_A 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-EVIH 203 (416)
T ss_dssp STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-EEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-cceE
Confidence 434999999999999999987651 1111234567999999999999965599999999999999999875 5666
Q ss_pred EecC------CCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCCCEEEE
Q 039302 320 FKAH------NADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 320 ~~~h------~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~las 389 (479)
+..+ ...|++++|+|++..+|++++.|+ .|++||+++... ++..+. +|...|++++|+|.++.+|++
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 6655 788999999999878999999999 999999998743 677788 899999999999966699999
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++.|+.|++||+.... .+.....+...|.+++|+|+++.+|++++.|+ |++|++.
T Consensus 281 ~~~dg~v~~wd~~~~~------------------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAE------------------------QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp EESSSEEEEECSSSCC------------------------EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred EeCCCCEEEeeCCCCc------------------------cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 9999999999998763 12222222357999999999977999999998 9999998
Q ss_pred ccCC
Q 039302 469 NIQS 472 (479)
Q Consensus 469 ~~~~ 472 (479)
+...
T Consensus 337 ~~~~ 340 (416)
T 2pm9_A 337 NLTN 340 (416)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=295.19 Aligned_cols=323 Identities=15% Similarity=0.247 Sum_probs=236.5
Q ss_pred ccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 039302 67 FHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDD 146 (479)
Q Consensus 67 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (479)
....-+..++.|-|+.. +|++|+ .++.|.||++....
T Consensus 64 ~~~~~~v~~~~~s~~~~-----------~l~~~~-----~dg~v~vw~~~~~~--------------------------- 100 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNK-----------IIAGAL-----DNGSLELYSTNEAN--------------------------- 100 (416)
T ss_dssp CCCSSCEEEEEECSSSS-----------CEEEEE-----SSSCEEEECCSSTT---------------------------
T ss_pred EecCCceEEEEECCCCC-----------eEEEEc-----cCCeEEEeeccccc---------------------------
Confidence 34455677888877632 467664 57799999773100
Q ss_pred CCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc
Q 039302 147 DSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226 (479)
Q Consensus 147 d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (479)
........+.+|.+.|++++|+|++..+|++++.||.|++||+.......... ....+
T Consensus 101 ----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------~~~~~ 158 (416)
T 2pm9_A 101 ----------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------TPLTP 158 (416)
T ss_dssp ----------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC------------CCBCC
T ss_pred ----------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc------------ccccc
Confidence 01123456788999999999999955899999999999999998732100000 00111
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCC--CCcccCCCcEEEEEECCCCCcEEEEEeCCC-
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP--NPFIGHAASVEDLQWSPTESDVFASCSVDG- 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg- 303 (479)
..+.+|...|.+++|+|++..+|++|+.||.|++||+.+........ ....+|...|.+++|+|++..+|++++.|+
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 23467889999999999954499999999999999998754322100 112234789999999999866999999999
Q ss_pred --cEEEEEcCCCCceeeEEe-cCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFK-AHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~-~h~~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|++||+++...++..+. +|...|++++|+| ++ .+|++|+.||.|++||+++.+ ++..+..|...|++++|
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAE----QLSQFPARGNWCFKTKF 313 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCC----EEEEEECSSSCCCCEEE
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCc----cceeecCCCCceEEEEE
Confidence 999999998755677777 8999999999999 55 899999999999999999887 89999999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC------------------C-CC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG------------------Q-KD 440 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g------------------~-~~ 440 (479)
+|+++.+|++++.|+.|+||++........... .......++..++.|.+ + ..
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNLTNTLDEQE--------TETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP 385 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------------------CCSCCCSSCCCCCSTTCCC
T ss_pred CCCCCCEEEEEecCCcEEEEEccCCCCCccccc--------ccccccCCcccccccccccccccccccccccCCccccCC
Confidence 997668999999999999999987653211000 00111223334444433 2 35
Q ss_pred eeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 441 LKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+.+++|+|++. +|++++.|+ |+||++.
T Consensus 386 ~~~~~~s~dg~-~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 386 SPAAHWAFGGK-LVQITPDGKGVSITNPK 413 (416)
T ss_dssp SCCCEEETTTE-EECBCTTSSCBCCBCCC
T ss_pred ccceEEeeCCe-EEEEeCCCCeEEEEEec
Confidence 78999999995 888888888 9999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=276.48 Aligned_cols=315 Identities=16% Similarity=0.265 Sum_probs=230.4
Q ss_pred ccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039302 69 IGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148 (479)
Q Consensus 69 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (479)
..-+..++.|.|+.. .++++|+.. ..++.|.||++..
T Consensus 17 h~~~v~~~~~~p~~~----------~l~~~~s~~--~~d~~v~iw~~~~------------------------------- 53 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSA----------KFVTMGNFA--RGTGVIQLYEIQH------------------------------- 53 (357)
T ss_dssp CSSCEEEEEECTTSS----------EEEEEEC----CCCEEEEEEEECS-------------------------------
T ss_pred CCCceEEEEEcCCCc----------eEEEecCcc--CCCcEEEEEeCCC-------------------------------
Confidence 345667888888732 345565321 1378999998831
Q ss_pred ccccCCCCCCceeEEEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc
Q 039302 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226 (479)
Q Consensus 149 ~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (479)
.........+|.+.|++++|+|++ ..+|++|+.||.|++||+.. ...++
T Consensus 54 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------~~~~~ 104 (357)
T 3i2n_A 54 ---------GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--------------------PEMPV 104 (357)
T ss_dssp ---------SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--------------------CSSCS
T ss_pred ---------CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--------------------CCccE
Confidence 112334556899999999999983 37888999999999999987 12378
Q ss_pred EEecCCCCceEEEE------eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC----CCcEEEEE----ECCCC
Q 039302 227 VKFGGHKDEGYAID------WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH----AASVEDLQ----WSPTE 292 (479)
Q Consensus 227 ~~~~~h~~~v~~l~------~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~----~sp~~ 292 (479)
..+.+|...|.+++ |+|++. +|++|+.||.|++||+.+..... ..+..| ...|.+++ |+|++
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQGENKRDCWTVAFGNAYNQEE 180 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCS---EEECCCTTSCCCCEEEEEEECCCC-CC
T ss_pred EEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcc---eeccccCCCCCCceEEEEEEeccCCCC
Confidence 88999999999995 467787 99999999999999998765222 223223 34899998 78888
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCCCCCCc-eEEEee
Q 039302 293 SDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNR---LASCLLASGSDDGTFSIHDLRLLKGGDS-VVAHFE 368 (479)
Q Consensus 293 ~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~~l~sgs~dg~i~iwDlr~~~~~~~-~~~~~~ 368 (479)
. +|++++.||.|++||+++.+ ......|...|.+++|+| ++ .+|++|+.||.|++||+++...... ....+.
T Consensus 181 ~-~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 256 (357)
T 3i2n_A 181 R-VVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEK 256 (357)
T ss_dssp C-EEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred C-EEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccC
Confidence 8 99999999999999999875 344577889999999999 77 8999999999999999988763111 112345
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC--CCCceEEeecCC-CCeeeEE
Q 039302 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED--LPPQLLFIHQGQ-KDLKELH 445 (479)
Q Consensus 369 ~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~l~~~h~g~-~~V~~v~ 445 (479)
+|...|++++|+|++..+|++++.||.|++||++........ ........ .....+....+| ..|++++
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK--------DSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C--------CTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc--------cCCCCccccccccceeeccccCCCCeeEEE
Confidence 899999999999976448999999999999999876432100 00000000 011233333334 4799999
Q ss_pred EeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 446 WHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 446 w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
|+|++..++++++.|+ |+||++.++.
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999987776888888 9999987653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=306.64 Aligned_cols=254 Identities=20% Similarity=0.276 Sum_probs=215.1
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++|+|+|++..+|+||+.||+|+||++...... .......+.+|...|.+++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~v~ 437 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLTGHSHFVEDVV 437 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEECCSSCEEEEE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceecCCCCcEEEEE
Confidence 345688999999999999988789999999999999999762111 1234567889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.||.|+|||+.++.. ...+.+|...|.+++|+|++. +|++|+.|++|+|||++... ...+
T Consensus 438 ~s~~g~-~l~sgs~Dg~v~vwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~--~~~~ 509 (694)
T 3dm0_A 438 LSSDGQ-FALSGSWDGELRLWDLAAGVS----TRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGEC--KYTI 509 (694)
T ss_dssp ECTTSS-EEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE--EEEE
T ss_pred ECCCCC-EEEEEeCCCcEEEEECCCCcc----eeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCc--ceee
Confidence 999998 999999999999999987543 245789999999999999998 89999999999999987642 2222
Q ss_pred ----ecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 321 ----KAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 321 ----~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
.+|...|++++|+|++ ..+|++|+.|++|++||+++.. ....+.+|...|++++|+|++ .+|++|+.|++
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~ 584 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGV 584 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSB
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCe
Confidence 4688899999999986 3589999999999999999877 788999999999999999965 99999999999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
|+|||+.... .+....++..|.+++|+|++. +++++++++|+||++.+
T Consensus 585 i~iwd~~~~~-------------------------~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 585 VLLWDLAEGK-------------------------KLYSLEANSVIHALCFSPNRY-WLCAATEHGIKIWDLES 632 (694)
T ss_dssp CEEEETTTTE-------------------------EEECCBCSSCEEEEEECSSSS-EEEEEETTEEEEEETTT
T ss_pred EEEEECCCCc-------------------------eEEEecCCCcEEEEEEcCCCc-EEEEEcCCCEEEEECCC
Confidence 9999998763 333444456799999999984 77777777799998754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=279.58 Aligned_cols=279 Identities=14% Similarity=0.194 Sum_probs=211.2
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+|++++.||.|++||+... .......+..|...|.+++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGR-------------------TWKPTLVILRINRAARCVR 103 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETT-------------------EEEEEEECCCCSSCEEEEE
T ss_pred eeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCC-------------------eeeeeEEeecCCCceeEEE
Confidence 445677999999999999988 78889999999999999762 1122344567889999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC---------
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR--------- 311 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~--------- 311 (479)
|+|++. +|++|+.||.|++||+..............+|...|.+++|+|++. +|++++.||.|++||++
T Consensus 104 ~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 104 WAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp ECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred ECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEccccccccccc
Confidence 999997 9999999999999999876542222233467899999999999988 99999999999999975
Q ss_pred ---------CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 312 ---------VGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 312 ---------~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.+ .++..+..|...|++++|+|++ .+|++++.||.|++||+++.+ ++..+..|..+|++++|+|+
T Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 182 PTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITE 255 (372)
T ss_dssp CBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEET
T ss_pred ccccccccchh-hheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc----eeEEEccCCCCeEEEEEecC
Confidence 23 3666778899999999999998 899999999999999999887 89999999999999999995
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CCCh--------HH--------HHHHhhhcccccCCCCCCCCceEEeecCC-CCeee
Q 039302 383 EGSTLAVSSADNQLTIWDLSL--EKDE--------EE--------EAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKE 443 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~--~~~~--------~~--------~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~ 443 (479)
+ .+|++| .|+.|++|++.. +.-. .. ...+.... ........|........+| ..|++
T Consensus 256 ~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~ 331 (372)
T 1k8k_C 256 S-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD--KKASSEGSAAAGAGLDSLHKNSVSQ 331 (372)
T ss_dssp T-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC--CCC---------CCCSSSSSSCEEE
T ss_pred C-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc--cccccccCccccccccccccCCcce
Confidence 5 777776 899999999987 2100 00 00000000 0000000000001111233 47999
Q ss_pred EEEeCCCC---cEEEEEcCCC-ceEEeeeccC
Q 039302 444 LHWHTQVP---GMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 444 v~w~p~~~---~ll~s~~~dg-i~iw~~~~~~ 471 (479)
++|++... .+|++++.|| |++|++.+..
T Consensus 332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99886654 5899999999 9999987763
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=280.40 Aligned_cols=261 Identities=19% Similarity=0.290 Sum_probs=212.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+||+|+.||.|+||++... ....+..+.+|...|++++|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 64 (379)
T ss_dssp CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSSCEEEEEEC
T ss_pred EEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCC-------------------cceeeeEecCCCCcEEEEEeC
Confidence 3577999999999999998 78899999999999999741 145667888999999999999
Q ss_pred CC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-ee
Q 039302 243 PV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS-AL 317 (479)
Q Consensus 243 ~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~-~~ 317 (479)
+. +. +|++|+.||.|++||+.++.... ...+..|...|.+++|+|+ +. +|++++.||.|++||++.... ..
T Consensus 65 ~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 65 HPKFGT-ILASCSYDGKVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp CGGGCS-EEEEEETTSCEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCE
T ss_pred CCCCCC-EEEEeccCCEEEEEEcCCCceeE--eeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceee
Confidence 87 66 99999999999999998754211 2446679999999999999 76 999999999999999998742 34
Q ss_pred eEEecCCCCEEEEEEcCC------------CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 318 MSFKAHNADVNVISWNRL------------ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~------------~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
..+..|...|++++|+|. .+.+|++|+.||.|++||++.......++..+.+|..+|++++|+|++
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 566789999999999994 238999999999999999988764233567788999999999999973
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce-EEee-cCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL-LFIH-QGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~h-~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
+.+|++++.||.|++||+..... +... +... .+...|++++|+|++. +|++++.||
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg 278 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQG---------------------PWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDN 278 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTS---------------------CCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSS
T ss_pred CCeEEEEeCCCEEEEEeCCCCCc---------------------cceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCC
Confidence 69999999999999999987631 1111 1111 1234799999999997 555555566
Q ss_pred -ceEEeeec
Q 039302 462 -FNILMPSN 469 (479)
Q Consensus 462 -i~iw~~~~ 469 (479)
|++|++..
T Consensus 279 ~i~iw~~~~ 287 (379)
T 3jrp_A 279 KVTLWKENL 287 (379)
T ss_dssp SEEEEEEEE
T ss_pred cEEEEeCCC
Confidence 99999873
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=297.86 Aligned_cols=258 Identities=16% Similarity=0.235 Sum_probs=201.2
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-------CCC
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-------GHK 233 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~ 233 (479)
+...+.+|.+.|++++|+|++ .+||+|+.||+|+|||+.. .+.+..+. +|.
T Consensus 182 ~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~---------------------g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 182 FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVD---------------------GTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEECBCTTSSSCSSS
T ss_pred EeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCC---------------------CcEeeeeccccccccccC
Confidence 345678999999999999998 7999999999999999876 34444442 799
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---------------------------------------CCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---------------------------------------DPN 274 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---------------------------------------~~~ 274 (479)
..|++++|+|++. +|++|+.|++|+|||+.++..... ...
T Consensus 240 ~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 240 GSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence 9999999999998 999999999999999976432110 011
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----------------------------------
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---------------------------------- 320 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---------------------------------- 320 (479)
.+.+|...|++++|+|++. +|++++.|++|++||++++.. ...+
T Consensus 319 ~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~-~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGIS-NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred EEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce-eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence 2458999999999999998 999999999999999876531 0000
Q ss_pred ------------------------------------------------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 321 ------------------------------------------------KAHNADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 321 ------------------------------------------------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
..|...+++++|+|++ .+||+|+.|++|++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 397 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEE
T ss_pred CccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEE
Confidence 0133457899999999 899999999999999
Q ss_pred eCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 353 DLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 353 Dlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
|+..... ..+.. .+|...|++|+|+|++ .+|++++.|++|++|++...... ....+.
T Consensus 476 d~~~~~~--~~~~~-~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~~~~-------------------~~~~~~ 532 (611)
T 1nr0_A 476 KLSGASV--SEVKT-IVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFEL-------------------AHTNSW 532 (611)
T ss_dssp EEETTEE--EEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEE-------------------SCCCCC
T ss_pred EccCCce--eeeec-cCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCCCce-------------------eeeeee
Confidence 9976541 12334 6799999999999965 99999999999999999762100 000011
Q ss_pred EeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 433 FIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 433 ~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..|. ..|.+++|+|++. +|++++.|+ |++|++...
T Consensus 533 ~~H~--~~V~~v~fspdg~-~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 533 TFHT--AKVACVSWSPDNV-RLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CCCS--SCEEEEEECTTSS-EEEEEETTSCEEEEETTCT
T ss_pred eecc--cceeEEEECCCCC-EEEEEECCCcEEEEECCCc
Confidence 1133 5799999999996 788888888 999998653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=296.65 Aligned_cols=269 Identities=20% Similarity=0.304 Sum_probs=207.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ...+..+.+|...|.++
T Consensus 421 ~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~---------------------~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 421 VAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAA---------------------GVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred cccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CcceeEEeCCCCCEEEE
Confidence 3445788999999999999998 7899999999999999987 56677889999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+|+|++. +|++|+.|++|++||+....... ......+|...|.+++|+|++. ..|++|+.||+|++||++..+ ...
T Consensus 479 ~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~ 555 (694)
T 3dm0_A 479 AFSLDNR-QIVSASRDRTIKLWNTLGECKYT-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRS 555 (694)
T ss_dssp EECTTSS-CEEEEETTSCEEEECTTSCEEEE-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEE
T ss_pred EEeCCCC-EEEEEeCCCEEEEEECCCCccee-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEE
Confidence 9999998 99999999999999986532221 1234567999999999999873 489999999999999999875 677
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|++++|+|++ .+|++|+.||.|+|||+++.+ .+..+. +...|++++|+|++ .+|++++ |+.|+|
T Consensus 556 ~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~i 627 (694)
T 3dm0_A 556 TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKI 627 (694)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEE
T ss_pred EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEE
Confidence 889999999999999999 899999999999999999887 666665 45689999999954 6666655 667999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCC-ceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPP-QLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
||+......... .... ......... .....+.....+++++|+|++. +|++++.|| |+||++.
T Consensus 628 wd~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 628 WDLESKSIVEDL---KVDL---KAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTTTEEEEEE---CCCC---C----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred EECCCCCChhhh---cccc---ccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEecc
Confidence 999876321000 0000 000000000 0000011112478999999996 788888888 9999875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=272.93 Aligned_cols=257 Identities=19% Similarity=0.263 Sum_probs=214.6
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+...+.+|.+.|++|+|+|+++.+||||+.||+|+|||+...... ...+...+.+|...|.++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l~~h~~~V~~~ 92 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRALRGHSHFVSDV 92 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEECCCSSCEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEEeCCCCCEEEE
Confidence 4455688999999999999997789999999999999999763211 134567889999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|++. +|++|+.|+.|++|+....... .....+...+..+.+++.+. +|++|+.|+.+++||++........
T Consensus 93 ~~s~dg~-~l~s~~~d~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 93 VISSDGQ-FALSGSWDGTLRLWDLTTGTTT----RRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTTEEE----EEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEEC
T ss_pred EECCCCC-EEEEEcccccceEEeeccccee----eeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEE
Confidence 9999998 9999999999999999765432 33456677899999999988 8999999999999999877545555
Q ss_pred EecCCCCEEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 320 FKAHNADVNVISWNRLAS-CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~-~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..+|...+..++|++++. .++++++.|+.|++||+++.. ++..+.+|..+|++++|+|++ .+|++|+.|+.|++
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAML 241 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 678999999999988753 578899999999999999887 788999999999999999965 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
||++... .+....++..|..+.|+|++ .+++++.++.|++|++..
T Consensus 242 wd~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 242 WDLNEGK-------------------------HLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp EETTTTE-------------------------EEEEEECSSCEEEEEECSSS-SEEEEEETTEEEEEETTT
T ss_pred EEeccCc-------------------------eeeeecCCceEEeeecCCCC-ceeeccCCCEEEEEECCC
Confidence 9998763 34444455789999999987 466655555599998754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=264.27 Aligned_cols=249 Identities=14% Similarity=0.248 Sum_probs=208.0
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
+.......+|...|++++|+|++ .+|++++.+|.|++||+... .......+..|...+.+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-------------------~~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP-------------------TPRIKAELTSSAPACYA 146 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC---------------------EEEEEEECSSSCEEE
T ss_pred eeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC-------------------CcceeeecccCCCceEE
Confidence 34434455899999999999998 78889999999999999872 12245677889999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++. +|++++.||.|++||+.++.. ...+..|...|.+++|+|++. .|++++.||.|++||+++.+ .+.
T Consensus 147 ~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~-~~~ 219 (337)
T 1gxr_A 147 LAISPDSK-VCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGR-QLQ 219 (337)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EEE
T ss_pred EEECCCCC-EEEEEeCCCcEEEEeCCCCce----eeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCc-eEe
Confidence 99999987 999999999999999987543 234667999999999999998 99999999999999999875 444
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
. ..+...+.+++|+|++ .+|++++.+|.|++||++... ...+..|..+|++++|+|++ .+|++++.||.|++
T Consensus 220 ~-~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 220 Q-HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNA 291 (337)
T ss_dssp E-EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred e-ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC-----eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEE
Confidence 4 3578889999999999 899999999999999999875 45678899999999999965 89999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
||+.... .++...+...|.+++|+|++. +|++++.|| |++|++.
T Consensus 292 ~~~~~~~-------------------------~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 292 WRTPYGA-------------------------SIFQSKESSSVLSCDISVDDK-YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTTCC-------------------------EEEEEECSSCEEEEEECTTSC-EEEEEETTSCEEEEEEE
T ss_pred EECCCCe-------------------------EEEEecCCCcEEEEEECCCCC-EEEEecCCCeEEEEEEe
Confidence 9998763 223333346799999999996 666666666 9999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=288.52 Aligned_cols=239 Identities=21% Similarity=0.339 Sum_probs=203.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|...|++++|+|++ .+|++++.+|.|++|+.. .+.+..+.+|...|.+++|+
T Consensus 338 ~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~----------------------~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN----------------------GQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT----------------------CCEEEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCC----------------------CCEEEEecCCCCCeEEEEEC
Confidence 3567899999999999999 788999999999999964 35677888999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.|+.|++|+... .. ...+.+|...|++++|+|++. +|++++.|++|++||... ..+..+.+
T Consensus 395 ~dg~-~l~~~~~d~~v~~~~~~~-~~----~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~--~~~~~~~~ 465 (577)
T 2ymu_A 395 PDGQ-TIASASDDKTVKLWNRNG-QL----LQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRNG--QLLQTLTG 465 (577)
T ss_dssp TTSS-CEEEEETTSEEEEECTTC-CE----EEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTS--CEEEEEEC
T ss_pred CCCC-EEEEEeCCCEEEEEeCCC-CE----EEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECCC--CEEEEEcC
Confidence 9998 999999999999999643 22 245778999999999999998 999999999999999754 36778899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++++|+|++ .+|++++.|+.|++||. +++ ++..+.+|...|++++|+|++ .+|++++.|+.|+|||+.
T Consensus 466 ~~~~v~~~~~spd~-~~las~~~d~~i~iw~~-~~~----~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 466 HSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQ----LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp CSSCEEEEEECTTS-CEEEEEETTSEEEEEET-TSC----EEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT
T ss_pred CCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcC-CCC----EEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC
Confidence 99999999999999 89999999999999995 344 788999999999999999965 899999999999999964
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
... ...+..|. ..|++++|+|++. +|+|++.|+ |++|+
T Consensus 539 ~~~-----------------------~~~~~~h~--~~v~~~~fs~dg~-~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQL-----------------------LQTLTGHS--SSVWGVAFSPDGQ-TIASASSDKTVKLWN 577 (577)
T ss_dssp SCE-----------------------EEEEECCS--SCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred CCE-----------------------EEEEcCCC--CCEEEEEEcCCCC-EEEEEeCCCEEEEeC
Confidence 220 12233332 5799999999996 566777777 99995
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=273.78 Aligned_cols=255 Identities=14% Similarity=0.256 Sum_probs=207.4
Q ss_pred EEEEecCCcceeEEEEecC---CC---cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCC-----cEEec
Q 039302 162 QLRKVAHQGCVNRIRAMSQ---NP---HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP-----LVKFG 230 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~---~~---~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 230 (479)
...+.+|...|++++|+|+ +. .+|++++.||.|++|++.. ... +..+.
T Consensus 55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~~~~~ 113 (397)
T 1sq9_A 55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR---------------------EDETKKVIFEKLD 113 (397)
T ss_dssp EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE---------------------CTTTCCEEEEEEC
T ss_pred ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC---------------------Ccccccccceeec
Confidence 4567799999999999998 23 5788899999999999986 333 67788
Q ss_pred CC-----CCceEEEEeC----CCCCCe-EEEEeCCCeEEEEecCC------CCccccCC-CCc-------ccCCCcEEEE
Q 039302 231 GH-----KDEGYAIDWN----PVAPGR-LVSGDCNSCIHLWEPAS------DATWNVDP-NPF-------IGHAASVEDL 286 (479)
Q Consensus 231 ~h-----~~~v~~l~~s----~~~~~~-l~sg~~dg~I~lwd~~~------~~~~~~~~-~~~-------~~h~~~V~~l 286 (479)
.| ...|.+++|+ |++. + |++|+.||.|++||+.+ ........ ..+ ..|...|.++
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred ccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEE
Confidence 88 5899999999 9887 8 99999999999999987 33311000 034 4488899999
Q ss_pred EECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---C---CCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCC
Q 039302 287 QWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA---H---NADVNVISWNRLASCLLASGSDD---GTFSIHDLRLL 357 (479)
Q Consensus 287 ~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~---h---~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~ 357 (479)
+|+|++ +|++++.||.|++||+++.+ ++..+.. | ...|.+++|+|++ .+|++|+.| |.|++||+++.
T Consensus 193 ~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 193 DISERG--LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp EECTTS--EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTC
T ss_pred EECCCc--eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCC
Confidence 999998 89999999999999999875 7777888 8 9999999999998 899999999 99999999988
Q ss_pred CCCCceEEEeec-------------CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 358 KGGDSVVAHFEY-------------HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 358 ~~~~~~~~~~~~-------------h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
+ ++..+.. |...|++++|+|++ .+|++++.|+.|+|||+......
T Consensus 269 ~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~----------------- 326 (397)
T 1sq9_A 269 E----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERI----------------- 326 (397)
T ss_dssp C----EEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEE-----------------
T ss_pred c----ccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCcee-----------------
Confidence 7 7888988 99999999999965 89999999999999999876311
Q ss_pred CCCCCceEE------ee------------c-CCCCeeeEEEeCCCC---------cEEEEEcCCC-ceEEeeec
Q 039302 425 EDLPPQLLF------IH------------Q-GQKDLKELHWHTQVP---------GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 425 ~~~p~~l~~------~h------------~-g~~~V~~v~w~p~~~---------~ll~s~~~dg-i~iw~~~~ 469 (479)
..+. .| . +...|++++|+|++. .+|++++.|| |++|++.+
T Consensus 327 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 327 -----TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp -----EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred -----EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 1111 11 0 035799999999973 4888888888 99999865
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=275.15 Aligned_cols=248 Identities=23% Similarity=0.326 Sum_probs=207.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....|.+.|++++|+|++ .+|++|+.||.|+|||+.. .+.+..+.+|...|.+++|+
T Consensus 129 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~---------------------~~~~~~~~~~~~~v~~~~~~- 185 (401)
T 4aez_A 129 AETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVES---------------------QTKLRTMAGHQARVGCLSWN- 185 (401)
T ss_dssp EECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEEE-
T ss_pred eecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcC---------------------CeEEEEecCCCCceEEEEEC-
Confidence 344589999999999988 7889999999999999987 57778899999999999994
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+. .|++|+.||.|++||+...... ...+.+|...|.+++|+|++. +|++|+.||.|++||+++.. ++..+..|
T Consensus 186 -~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~-~~~~~~~~ 258 (401)
T 4aez_A 186 -RH-VLSSGSRSGAIHHHDVRIANHQ---IGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSI-PKFTKTNH 258 (401)
T ss_dssp -TT-EEEEEETTSEEEEEETTSSSCE---EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSS-EEEEECCC
T ss_pred -CC-EEEEEcCCCCEEEEecccCcce---eeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCC-ccEEecCC
Confidence 34 9999999999999999854332 245778999999999999888 99999999999999999875 67778889
Q ss_pred CCCEEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE--eCCCcEEEE
Q 039302 324 NADVNVISWNRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS--SADNQLTIW 399 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~--s~Dg~I~iw 399 (479)
...|.+++|+|++..++++|+ .|+.|++||+++.. ++..+. |...|++++|+|++ .+|+++ +.||.|++|
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~----~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA----RVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC----EEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEE
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC----EEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEE
Confidence 999999999998878999876 89999999999887 677775 67889999999966 777774 489999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++...... .......+...|.+++|+|++. +|++++.|| |++|++.+.
T Consensus 333 ~~~~~~~~----------------------~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 333 SYSSSGLT----------------------KQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEETTEEE----------------------EEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC-
T ss_pred ecCCccce----------------------eEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCC
Confidence 99875310 1222223335799999999986 778888888 999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=276.71 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=197.0
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-------------
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------------- 230 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 230 (479)
...+|.+.|++++|+|++ .+||+|+ ++.++||++... ..+..+.
T Consensus 59 ~~~~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g---------------------~~~~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDG---------------------SLVARLSDDSAANKDPENLN 115 (393)
T ss_dssp EEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTC---------------------CEEEEECC------------
T ss_pred EecCCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCC---------------------CEEEEecCcccccccccccc
Confidence 445799999999999999 6888866 689999999762 2222222
Q ss_pred -----CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 231 -----GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 231 -----~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
.+...|.+++|+|++. +|++|+.||.|+|||+.++.. ...+.+|...|.+++|+|++. .|++|+.|++|
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v 189 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI----VMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTV 189 (393)
T ss_dssp -----CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred ccccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcE----EEEEccCCCCEEEEEEcCCCC-EEEEecCCCcE
Confidence 2333599999999998 999999999999999987543 244778999999999999998 99999999999
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-------ecCCCCeEEEE
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-------EYHKHPVTSIE 378 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-------~~h~~~I~~v~ 378 (479)
++||+++++ +...+. +...+.+++|+|..+.+|++|+.||.|++||+++.. .+..+ .+|...|++++
T Consensus 190 ~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 190 RIWDLRTGQ-CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp EEEETTTTE-EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEE
T ss_pred EEEECCCCe-eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEE
Confidence 999999875 444444 567899999999444999999999999999999876 56555 57999999999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEE
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~ 457 (479)
|+|++ .+|++|+.|+.|++||++......... ............+| ..|.+++|+|++. +|+++
T Consensus 264 ~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~-------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg 328 (393)
T 1erj_A 264 FTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSK-------------TPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSG 328 (393)
T ss_dssp ECTTS-SEEEEEETTSEEEEEEC----------------------------CEEEEEECCSSCEEEEEECGGGC-EEEEE
T ss_pred ECCCC-CEEEEEeCCCEEEEEECCCCCCccccc-------------CCCCCcceEEEecccCcEEEEEECCCCC-EEEEE
Confidence 99965 999999999999999998753211000 00001122222233 4699999999986 77888
Q ss_pred cCCC-ceEEeeec
Q 039302 458 AADG-FNILMPSN 469 (479)
Q Consensus 458 ~~dg-i~iw~~~~ 469 (479)
+.|+ |++|++.+
T Consensus 329 s~D~~v~iwd~~~ 341 (393)
T 1erj_A 329 SKDRGVLFWDKKS 341 (393)
T ss_dssp ETTSEEEEEETTT
T ss_pred eCCCeEEEEECCC
Confidence 8888 99998754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=275.46 Aligned_cols=255 Identities=14% Similarity=0.242 Sum_probs=205.4
Q ss_pred cCCcceeEEEEecCCC---cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 167 AHQGCVNRIRAMSQNP---HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~---~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.|.+.|++++|+|++. .+|++|+.||.|+|||+.. .+.+..+.+|...|.+++|+|
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------------------~~~~~~~~~~~~~i~~~~~~~ 125 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT---------------------MQCIKHYVGHGNAINELKFHP 125 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT---------------------CCEEEEEESCCSCEEEEEECS
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh---------------------ceEeeeecCCCCcEEEEEECC
Confidence 4889999999999842 6899999999999999987 577888999999999999999
Q ss_pred -CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee----
Q 039302 244 -VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM---- 318 (479)
Q Consensus 244 -~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~---- 318 (479)
++. +|++|+.||.|++||+.++..... ...+.+|...|.+++|+|++. +|++++.||.|++||+++.+ ...
T Consensus 126 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 201 (366)
T 3k26_A 126 RDPN-LLLSVSKDHALRLWNIQTDTLVAI-FGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKR-MMNAIKE 201 (366)
T ss_dssp SCTT-EEEEEETTSCEEEEETTTTEEEEE-ECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHH-HHHHHHH
T ss_pred CCCC-EEEEEeCCCeEEEEEeecCeEEEE-ecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCc-cccccce
Confidence 665 999999999999999987543221 122368999999999999988 99999999999999999763 221
Q ss_pred ------------------------EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------CceE
Q 039302 319 ------------------------SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------DSVV 364 (479)
Q Consensus 319 ------------------------~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------~~~~ 364 (479)
....|...|.+++|+ + .+|++++.||.|++||+++.... ...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 223389999999999 4 79999999999999999876520 1247
Q ss_pred EEeecCCCCeEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee
Q 039302 365 AHFEYHKHPVTSIEWSPHE-GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE 443 (479)
Q Consensus 365 ~~~~~h~~~I~~v~~sp~~-~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~ 443 (479)
..+..|...|++++|+|+. +.+|++|+.||.|++||+...... ......+..|.+...|++
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------~~~~~~~~~~~~~~~v~~ 340 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH------------------KAKCTTLTHHKCGAAIRQ 340 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG------------------GCEEEEECCTTCCSCEEE
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc------------------cccceEEcccccCCceEE
Confidence 8888999999999999961 599999999999999999876421 000012222322367999
Q ss_pred EEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 444 LHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++|+|++. +|++++.|| |++|++.
T Consensus 341 ~~~s~~~~-~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 341 TSFSRDSS-ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred EEeCCCCC-eEEEEeCCCEEEEEEec
Confidence 99999986 777788887 9999874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=271.30 Aligned_cols=285 Identities=19% Similarity=0.269 Sum_probs=212.4
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+||+|+.||.|+|||+..... ....+..+.+|...|.+++|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~ 65 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTS-----------------NWELSDSWRAHDSSIVAIDW 65 (351)
T ss_dssp CCEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSC-----------------CEEEEEEEECCSSCEEEEEE
T ss_pred cccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCC-----------------cceecceeccCCCcEEEEEE
Confidence 34567999999999999998 7889999999999999986211 11356678899999999999
Q ss_pred CCC--CCCeEEEEeCCCeEEEEecCCCCccc-----cCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCC
Q 039302 242 NPV--APGRLVSGDCNSCIHLWEPASDATWN-----VDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 242 s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~ 312 (479)
+|. +. +|++|+.||.|++||+.++.... .....+.+|...|.+++|+|+ +. +|++++.||.|++||+++
T Consensus 66 ~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 66 ASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALE 143 (351)
T ss_dssp CCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSS
T ss_pred cCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCC
Confidence 994 66 99999999999999998753211 112346689999999999999 77 999999999999999998
Q ss_pred CCceeeEE-------------ecCCCCEEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 313 GKSALMSF-------------KAHNADVNVISWNRL--ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 313 ~~~~~~~~-------------~~h~~~v~~l~~~p~--~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
.+. +..+ ..|...+.+++|+|+ .+.+|++++.++.+.+|+..... ...+..+.+|..+|+++
T Consensus 144 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 144 PSD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp TTC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEE
T ss_pred hHH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEE
Confidence 752 2211 267889999999997 23899999999999888877665 22477888999999999
Q ss_pred EEeCCCC---CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcc---------------------cccCCCCCCCCceEE
Q 039302 378 EWSPHEG---STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTR---------------------EQVNAPEDLPPQLLF 433 (479)
Q Consensus 378 ~~sp~~~---~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~p~~l~~ 433 (479)
+|+|+++ .+|++|+.||.|++||++................ .............+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 9999653 7999999999999999987532211100000000 000000011124445
Q ss_pred eecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 434 IHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 434 ~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+|. .|++++|+|++. +|++++.|| |+||++...
T Consensus 301 ~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTT
T ss_pred EEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcC
Confidence 555554 699999999986 777777777 999998753
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=274.70 Aligned_cols=262 Identities=13% Similarity=0.188 Sum_probs=203.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.. .+.+..+.+|...|.+++|+
T Consensus 133 ~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKD---------------------GSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp EETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCCCEEEECCSSCEEEEEEE
T ss_pred eecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCC---------------------CcCceEEcCCCCcEEEEEEc
Confidence 3446899999999999998 6889999999999999987 56778899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCC---------------------CcEEEEEECCCCCcEEEEEeC
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHA---------------------ASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~---------------------~~V~~l~~sp~~~~~l~s~s~ 301 (479)
|++. +|++|+.||.|++||+.++..... ......|. ..+.+++|+|++. +|++|+.
T Consensus 191 ~~~~-~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 267 (420)
T 3vl1_A 191 DRGR-NVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHV 267 (420)
T ss_dssp TTTT-EEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEET
T ss_pred CCCC-EEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcC
Confidence 9997 999999999999999987543221 11112233 4444555678887 9999999
Q ss_pred CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEe
Q 039302 302 DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWS 380 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~s 380 (479)
||.|++||++++.........|...|++++|+|++..+|++|+.||.|++||+++... ++..+.. |..+|+++.|.
T Consensus 268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLINEGTPINNVYFA 344 (420)
T ss_dssp TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEESTTSCEEEEEEE
T ss_pred CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhccCCCCceEEEeC
Confidence 9999999999986444444568899999999999944999999999999999998764 5777776 77788888665
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCC---cEEEEE
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVP---GMIVST 457 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~---~ll~s~ 457 (479)
+ + .+|++++.|+.|++|++....... ...... ...........|.+++|+|++. .+++++
T Consensus 345 ~-~-~~l~s~~~d~~v~iw~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 345 A-G-ALFVSSGFDTSIKLDIISDPESER--------------PAIEFE-TPTFLVSNDDAVSQFCYVSDDESNGEVLEVG 407 (420)
T ss_dssp T-T-EEEEEETTTEEEEEEEECCTTCCS--------------CEECTT-SCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred C-C-CEEEEecCCccEEEEeccCCCCCc--------------cceecc-CccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence 3 4 799999999999999998753210 000011 1112223335799999999987 577777
Q ss_pred cCCCceEEeeec
Q 039302 458 AADGFNILMPSN 469 (479)
Q Consensus 458 ~~dgi~iw~~~~ 469 (479)
+.+.+.+|++.+
T Consensus 408 ~~g~~~~~~~~~ 419 (420)
T 3vl1_A 408 KNNFCALYNLSN 419 (420)
T ss_dssp TTTEEEEEESCC
T ss_pred CCceEEEEeccC
Confidence 666588898753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=283.27 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=193.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---CCCCceEE
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---GHKDEGYA 238 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~ 238 (479)
...+.+|.+.|++|+|+|.+..+|+||+.||+|+|||+... ....+. .+...+.+
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~----------------------~~~~~~~~~~~~~~~~~ 214 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN----------------------ILRVFASSDTINIWFCS 214 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC----------------------EEEEEECCSSCSCCCCC
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC----------------------ceeEEeccCCCCccEEE
Confidence 34677999999999999976689999999999999999762 112222 23346789
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--e
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--A 316 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~ 316 (479)
++|+|++. +|++|+.||.|++||+... . ...+.+|...|++++|+|++..+|++|+.|++|+|||++.... .
T Consensus 215 ~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 215 LDVSASSR-MVVTGDNVGNVILLNMDGK-E----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp EEEETTTT-EEEEECSSSBEEEEESSSC-B----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred EEECCCCC-EEEEEeCCCcEeeeccCcc-e----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence 99999998 9999999999999998653 2 3567899999999999999988999999999999999998653 2
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC------CeEEEEEeCCCCCEEEEE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH------PVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~------~I~~v~~sp~~~~~las~ 390 (479)
.....+|...|++++|+|++ .+|++|+.||.|+|||++++. ....+..|.. .+..+.|+|.+ .+++++
T Consensus 289 ~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 362 (435)
T 4e54_B 289 FLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD----CPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVG 362 (435)
T ss_dssp CSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS----SEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEE
T ss_pred EEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc----cceEEecccccccccceeEEEEEcCCC-CEEEEE
Confidence 33346799999999999999 899999999999999999887 5666655543 23456788855 555555
Q ss_pred e------------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeE-EEeCCCCcEEEE
Q 039302 391 S------------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKEL-HWHTQVPGMIVS 456 (479)
Q Consensus 391 s------------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v-~w~p~~~~ll~s 456 (479)
+ .++.|++||+..+. .+.....+| ..|.++ +|||++. +|++
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~------------------------~~~~l~~~~~~~v~s~~~fspdg~-~las 417 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGK------------------------MMCQLYDPESSGISSLNEFNPMGD-TLAS 417 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCC------------------------EEEEECCSSCCCCCCEEEECTTSS-CEEE
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCc------------------------EEEEEeCCCCCcEEEEEEECCCCC-EEEE
Confidence 3 34579999998763 222222333 368887 6999986 7778
Q ss_pred EcCCCceEEeeecc
Q 039302 457 TAADGFNILMPSNI 470 (479)
Q Consensus 457 ~~~dgi~iw~~~~~ 470 (479)
++++.|+||++.+.
T Consensus 418 g~d~~i~iW~~~~g 431 (435)
T 4e54_B 418 AMGYHILIWSQQEA 431 (435)
T ss_dssp ECSSEEEECCCC--
T ss_pred EcCCcEEEEECCcC
Confidence 87666999988654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=263.18 Aligned_cols=260 Identities=19% Similarity=0.284 Sum_probs=207.2
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+.+|.+.|++++|+|++ .+|++++.||.|++|+... .........+...+..+
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 134 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTT---------------------GTTTRRFVGHTKDVLSV 134 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred eeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecc---------------------cceeeeecCCCCceeEE
Confidence 3445678999999999999999 7889999999999999987 44555666788899999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.+++.+. +|++|+.|+.+++||+....... ....+|...|.+++|++++. .++++++.|+.|++||+++.+ .+.
T Consensus 135 ~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~ 209 (340)
T 4aow_A 135 AFSSDNR-QIVSGSRDKTIKLWNTLGVCKYT---VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKT 209 (340)
T ss_dssp EECTTSS-CEEEEETTSCEEEECTTSCEEEE---ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEE
T ss_pred EEeecCc-cceeecCCCeEEEEEeCCCceEE---EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eee
Confidence 9999998 99999999999999987643322 34668999999999998764 378899999999999999875 777
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|++++|+|++ .+|++|+.||.|++||+++.. ++..+.. ...|+++.|+|++ .+++++.|+.|++
T Consensus 210 ~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~i 281 (340)
T 4aow_A 210 NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGK----HLYTLDG-GDIINALCFSPNR--YWLCAATGPSIKI 281 (340)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE----EEEEEEC-SSCEEEEEECSSS--SEEEEEETTEEEE
T ss_pred EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCc----eeeeecC-CceEEeeecCCCC--ceeeccCCCEEEE
Confidence 889999999999999999 899999999999999999887 6777765 5689999999943 4566777999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||++....... . ..+........+...|++++|+|++. +|++++.|| |+||++.+.
T Consensus 282 wd~~~~~~~~~-------------~--~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 282 WDLEGKIIVDE-------------L--KQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EETTTTEEEEE-------------E--CCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEC-
T ss_pred EECCCCeEEEe-------------c--cccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCCCc
Confidence 99986531100 0 00001111112234799999999986 777888888 999998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=262.65 Aligned_cols=252 Identities=14% Similarity=0.207 Sum_probs=209.8
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+|++++.||.|++||+.. .+.+..+. |...+.+++|
T Consensus 67 ~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~-~~~~v~~~~~ 123 (369)
T 3zwl_B 67 LGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSN---------------------GQCVATWK-SPVPVKRVEF 123 (369)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEE-CSSCEEEEEE
T ss_pred hhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEee-cCCCeEEEEE
Confidence 34677899999999999988 7888999999999999987 56666776 7889999999
Q ss_pred CCCCCCeEEEEeCC-----CeEEEEecCCCCcccc-------CCCCcccCCC--cEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 242 NPVAPGRLVSGDCN-----SCIHLWEPASDATWNV-------DPNPFIGHAA--SVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 242 s~~~~~~l~sg~~d-----g~I~lwd~~~~~~~~~-------~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
+|++. +|++++.+ |.|++|++........ ....+..|.. .+.+++|+|++. +|++++.||.|++
T Consensus 124 ~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i 201 (369)
T 3zwl_B 124 SPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISK 201 (369)
T ss_dssp CTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEE
T ss_pred ccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEE
Confidence 99998 99999998 9999999976543110 1122345555 899999999998 9999999999999
Q ss_pred EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 308 WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 308 wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
||+++....+..+..|...|.+++|+|++ .+|++++.||.|++||+++.. .+..+. +..++.+++|+|++ .++
T Consensus 202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~----~~~~~~-~~~~~~~~~~~~~~-~~l 274 (369)
T 3zwl_B 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ----VLKKYE-TDCPLNTAVITPLK-EFI 274 (369)
T ss_dssp EETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC----EEEEEE-CSSCEEEEEECSSS-SEE
T ss_pred EECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc----eeeeec-CCCCceeEEecCCC-ceE
Confidence 99998555778888999999999999998 899999999999999999887 677776 78899999999965 889
Q ss_pred EEEeCCC--------------cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 388 AVSSADN--------------QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 388 as~s~Dg--------------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
++++.++ .|++||+.... .+.....+...|++++|+|++. +
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------------------~~~~~~~~~~~v~~~~~s~~~~-~ 329 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEE------------------------EIGRVQGHFGPLNTVAISPQGT-S 329 (369)
T ss_dssp EEEECCC-------------CEEEEEETTTCC------------------------EEEEEECCSSCEEEEEECTTSS-E
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCCCc------------------------chhheecccCcEEEEEECCCCC-E
Confidence 9998888 89999988763 1222222235799999999985 7
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
|++++.|| |++|++..-
T Consensus 330 l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEETTSEEEEEEECHH
T ss_pred EEEEcCCCeEEEEECccc
Confidence 88888887 999998653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=270.15 Aligned_cols=263 Identities=19% Similarity=0.267 Sum_probs=207.1
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+|.+.|++++|+|++ .+|++++.+|.|+|||.. ...+..+.+|...|.+++|+|++.
T Consensus 106 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~ 162 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDG-NSIVTGVENGELRLWNKT----------------------GALLNVLNFHRAPIVSVKWNKDGT 162 (425)
T ss_dssp --CBCEEEEEECTTS-SEEEEEETTSCEEEEETT----------------------SCEEEEECCCCSCEEEEEECTTSS
T ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCC----------------------CCeeeeccCCCccEEEEEECCCCC
Confidence 378899999999988 788899999999999932 466788889999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCcccc----------------------------------------------------CCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNV----------------------------------------------------DPN 274 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~----------------------------------------------------~~~ 274 (479)
+|++++.||.|++||+.++..... ...
T Consensus 163 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 241 (425)
T 1r5m_A 163 -HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG 241 (425)
T ss_dssp -EEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE
T ss_pred -EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee
Confidence 999999999999999976432100 011
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.+..|...|.+++|+|++. +|++++.||.|++||+++.+ .+..+..|...|.+++|+|++ +|++++.||.|++||+
T Consensus 242 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEET
T ss_pred eeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEEC
Confidence 2446889999999999998 99999999999999999875 677788899999999999987 8999999999999999
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI 434 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 434 (479)
++.. .+..+..|..+|++++|+|++ .+|++++.||.|++||+.......... ... ........+..++..
T Consensus 318 ~~~~----~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~ 387 (425)
T 1r5m_A 318 KQNT----LLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSL--YGN---RDGILNPLPIPLYAS 387 (425)
T ss_dssp TTTE----EEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC-------------------CEECCEEEE
T ss_pred CCCc----EeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeee--ecc---cccccCcccchhhhh
Confidence 9887 788999999999999999965 999999999999999997653110000 000 000000111223344
Q ss_pred ecCC--C-CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 435 HQGQ--K-DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 435 h~g~--~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..++ . .|++++|+|++. +|++++.|| |++|++.
T Consensus 388 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEEEECC
T ss_pred hcCcccCCceEEEEccCCCc-eEEEEecCceEEEEeec
Confidence 3444 3 899999999997 666666776 9999874
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=279.40 Aligned_cols=214 Identities=12% Similarity=0.196 Sum_probs=169.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++++.||.|+|||+.... ...+...+.+|...|.+++|+
T Consensus 49 ~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~------------------~~~~~~~~~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 49 RTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDG------------------TWKQTLVLLRLNRAATFVRWS 109 (377)
T ss_dssp CCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------------------------CCCCEEECCCCSSCEEEEECC
T ss_pred EEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC------------------ceeeeeEecccCCceEEEEEC
Confidence 3566899999999999998 788899999999999998721 124667788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-------
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------- 314 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------- 314 (479)
|++. +|++|+.|+.|++||+.+...+.. ...+.+ |...|++++|+|++. +|++++.||+|++||++...
T Consensus 110 ~~~~-~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 110 PNED-KFAVGSGARVISVCYFEQENDWWV-SKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp TTSS-CCEEEESSSCEEECCC-----CCC-CEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred CCCC-EEEEEecCCeEEEEEECCccccee-eeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccc
Confidence 9988 999999999999999987653221 234555 999999999999988 99999999999999996321
Q ss_pred ----------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 315 ----------SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 315 ----------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
.++..+ .|...|++++|+|++ .+|++|+.||.|++||+++.......+..+.+|..+|++++|+|++
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~- 263 (377)
T 3dwl_C 187 SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES- 263 (377)
T ss_dssp CSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-
T ss_pred cccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-
Confidence 234444 899999999999999 8999999999999999998873111277888999999999999965
Q ss_pred CEEEEEeCCCcEEEEECC
Q 039302 385 STLAVSSADNQLTIWDLS 402 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~ 402 (479)
.+|++|+.++.+ +|+..
T Consensus 264 ~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEEESSSSEE-EECCC
T ss_pred CEEEEEcCCcEE-EEEeC
Confidence 888888766555 77765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=282.61 Aligned_cols=256 Identities=19% Similarity=0.236 Sum_probs=198.9
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|.+.|++++|+|++ .+||+|+.||.|+|||+.... ...+..+.+|...|++++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~-------------------~~~~~~~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNG-------------------WKHARTFSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTE-------------------EEECCCBCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCc-------------------eEEEEEEecCCceEEEEEEeCC
Confidence 34577899999999998 788999999999999998610 1455677899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEec
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFKA 322 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~~ 322 (479)
+. +|++|+.||.|++||+.++..+. ....+.+|...|.+++|+|++. +|++|+.|+.|++||++.... ....+..
T Consensus 67 ~~-~l~s~s~d~~v~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 67 SN-RIVTCSQDRNAYVYEKRPDGTWK-QTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp TC-CEEEEETTSSEEEC------CCC-CEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred CC-EEEEEeCCCeEEEEEcCCCCcee-eeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 97 99999999999999998765111 1234667999999999999988 899999999999999998753 3566666
Q ss_pred -CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--------------CCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 323 -HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--------------GDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 323 -h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--------------~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
|...|++++|+|++ .+|++|+.||.|++||++.... ...++..+ +|...|++++|+|++ .+|
T Consensus 144 ~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l 220 (377)
T 3dwl_C 144 PLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NAL 220 (377)
T ss_dssp SCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCE
T ss_pred ccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEE
Confidence 99999999999998 8999999999999999964321 01255566 899999999999965 899
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
++++.|+.|++||+..... ++.++....+| ..|.+++|+|++. +|++++++++.+|.
T Consensus 221 ~~~~~d~~i~iwd~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQ---------------------PPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPILLQ 278 (377)
T ss_dssp EEEETTTEEC-CEECSTTS---------------------CEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEEEEC
T ss_pred EEEeCCCcEEEEECCCCCC---------------------cceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEEEEE
Confidence 9999999999999988742 11112222222 4799999999985 88889988877887
Q ss_pred ee
Q 039302 467 PS 468 (479)
Q Consensus 467 ~~ 468 (479)
..
T Consensus 279 ~~ 280 (377)
T 3dwl_C 279 GN 280 (377)
T ss_dssp CC
T ss_pred eC
Confidence 75
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=283.47 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=180.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|...|++|+|+|.++.+||+|+.||+|+|||+... .......+.+|.+.|++|+|+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-------------------~~~~~~~~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-------------------DKPTFIKGIGAGGSITGLKFN 173 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-------------------SCCEEECCCSSSCCCCEEEEC
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-------------------CceeEEEccCCCCCEEEEEEe
Confidence 3567899999999999987789999999999999999762 123345567899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+..+|+||+.||+|+|||+.+..... ......+...+.+++|+|++. +|++|+.||.|++||++.. .+..+.+
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~--~~~~~~~ 248 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNILRV--FASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK--ELWNLRM 248 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCEEEE--EECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC--BCCCSBC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCceeE--EeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc--eeEEEec
Confidence 8644499999999999999997642211 112233455688999999998 9999999999999999864 4667889
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++++|+|++..+|++|+.|+.|+|||+++.... ..+....+|..+|++++|+|++ .+|++++.|+.|+|||+.
T Consensus 249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-ASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-SCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESS
T ss_pred ccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-ceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECC
Confidence 99999999999999789999999999999999987631 1233446799999999999965 999999999999999998
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
...
T Consensus 327 ~~~ 329 (435)
T 4e54_B 327 QWD 329 (435)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=268.58 Aligned_cols=247 Identities=23% Similarity=0.385 Sum_probs=207.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|...|++|+|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...+.+++|+
T Consensus 141 ~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~---------------------~~~~~~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 141 LQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ---------------------QKRLRNMTSHSARVGSLSWN 198 (420)
T ss_dssp EECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEEE
T ss_pred EEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCC---------------------CcEEEEEeCCCCceEEEeeC
Confidence 4556888999999999999 7899999999999999987 67788899999999999986
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMS 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~ 319 (479)
+ . .|++|+.|+.+++|+........ ..+.+|...+..+.|+|++. ++++++.|+.|++||++.+.. .+..
T Consensus 199 ~--~-~l~sgs~d~~i~~~d~~~~~~~~---~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 199 S--Y-ILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp T--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred C--C-EEEEEeCCCceeEeeecccceee---EEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeee
Confidence 4 3 99999999999999987654322 45778999999999999998 999999999999999987642 4556
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCc
Q 039302 320 FKAHNADVNVISWNRLASCLLASG--SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS--ADNQ 395 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sg--s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s--~Dg~ 395 (479)
...|...|.+++|+|.+..+++++ +.|++|++||++++. ++..+.. ...+.++.|+|++ ..|++++ .|+.
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~----~~~~~~~-~~~v~~~~~~~~~-~~lv~~sg~~d~~ 345 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CLSAVDA-HSQVCSILWSPHY-KELISGHGFAQNQ 345 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE----EEEEEEC-SSCEEEEEEETTT-TEEEEEECTTTCC
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc----cceeecc-ccceeeeeecCCC-CeEEEEEecCCCE
Confidence 778999999999999988888765 479999999999887 6777765 4578999999977 5555543 6999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+|||+.... .+....|| ..|++++|+|++. +|+|++.|+ |+||++...
T Consensus 346 I~iwd~~~~~-------------------------~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 346 LVIWKYPTMA-------------------------KVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEETTTCC-------------------------EEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCS
T ss_pred EEEEECCCCc-------------------------EEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence 9999998763 23333444 4799999999996 788888888 999998765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=273.79 Aligned_cols=258 Identities=16% Similarity=0.269 Sum_probs=206.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.|++++|+|.+..+||+|+.||.|+|||+....... ....++..+.+|...|.+++|+|
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~p 141 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--------------PLREPVITLEGHTKRVGIVAWHP 141 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS--------------CBCSCSEEEECCSSCEEEEEECS
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc--------------ccCCceEEecCCCCeEEEEEECc
Confidence 3568999999999999444899999999999999998721100 01267888999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCc--ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF--IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF- 320 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~- 320 (479)
++..+|++|+.||.|++||+.++... ..+ .+|...|.+++|+|++. +|++++.||.|++||++++. .+..+
T Consensus 142 ~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~ 215 (402)
T 2aq5_A 142 TAQNVLLSAGCDNVILVWDVGTGAAV----LTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGT-VVAEKD 215 (402)
T ss_dssp SBTTEEEEEETTSCEEEEETTTTEEE----EEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCcc----EEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCc-eeeeec
Confidence 98559999999999999999875432 234 67999999999999988 89999999999999999875 56666
Q ss_pred ecCCCC-EEEEEEcCCCCcEEEEE---eCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCCCEE-EEEeCCC
Q 039302 321 KAHNAD-VNVISWNRLASCLLASG---SDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEGSTL-AVSSADN 394 (479)
Q Consensus 321 ~~h~~~-v~~l~~~p~~~~~l~sg---s~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~l-as~s~Dg 394 (479)
..|... +.++.|+|++ .+|++| +.|+.|++||+++... ++.... .|...|.+++|+|++ .+| ++|+.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg 290 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEE---PLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDS 290 (402)
T ss_dssp CSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSS---CSEEEECCCCSSCEEEEEETTT-TEEEEEETTCS
T ss_pred cCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccC---CceEEeccCCCceeEEEEcCCC-CEEEEEEcCCC
Confidence 678765 8999999998 899999 7999999999998763 343333 477889999999976 555 5666899
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.|++||+..... ....+..|.+...|.+++|+|++. ++++ +.+.+++|++.+
T Consensus 291 ~i~i~d~~~~~~---------------------~~~~l~~~~~~~~v~~~~~sp~~~-~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 291 SIRYFEITSEAP---------------------FLHYLSMFSSKESQRGMGYMPKRG-LEVN-KCEIARFYKLHE 342 (402)
T ss_dssp CEEEEEECSSTT---------------------CEEEEEEECCSSCCSEEEECCGGG-SCGG-GTEEEEEEEEET
T ss_pred eEEEEEecCCCc---------------------ceEeecccccCCcccceEEecccc-ccee-cceeEEEEEcCC
Confidence 999999987631 123455566556899999999985 4443 333489998865
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=278.60 Aligned_cols=240 Identities=20% Similarity=0.355 Sum_probs=204.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++++.||.|++||+.. ..+..+.+|...+.+++|+
T Consensus 297 ~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~----------------------~~~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG----------------------QHLQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS----------------------CEEEEECCCSSCEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCC----------------------CeeEEEeCCCCCEEEEEEC
Confidence 4577999999999999998 7888999999999999765 4456788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.||.|++|+... .. ...+.+|...|++++|+|++. +|++++.|+.|++||... ..+..+.+
T Consensus 354 ~~g~-~l~~~~~dg~v~~~~~~~-~~----~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~--~~~~~~~~ 424 (577)
T 2ymu_A 354 PDGQ-TIASASDDKTVKLWNRNG-QL----LQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG--QLLQTLTG 424 (577)
T ss_dssp TTSS-EEEEEETTSEEEEEETTC-CE----EEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTC--CEEEEEEC
T ss_pred CCCC-EEEEEeCCCEEEEEcCCC-CE----EEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCC--CEEEEecC
Confidence 9998 999999999999999643 22 245678999999999999998 899999999999999643 36778899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++++|+|++ .+|++++.|+.|++||+. .+ .+..+.+|...|++++|+|++ .+|++++.|+.|++||..
T Consensus 425 ~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~-~~----~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 425 HSSSVWGVAFSPDD-QTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN 497 (577)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-SC----EEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEECCCC-CEEEEEcCCCEEEEEECC-CC----EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC
Confidence 99999999999999 899999999999999964 33 788899999999999999965 999999999999999964
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
... .+.+..| ...|++++|+|++. +|++++.|+ |++|+.
T Consensus 498 ~~~-----------------------~~~~~~h--~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 498 GQL-----------------------LQTLTGH--SSSVRGVAFSPDGQ-TIASASDDKTVKLWNR 537 (577)
T ss_dssp SCE-----------------------EEEEECC--SSCEEEEEECTTSS-CEEEEETTSEEEEECT
T ss_pred CCE-----------------------EEEEeCC--CCCEEEEEEcCCCC-EEEEEECcCEEEEEeC
Confidence 321 1222333 25799999999996 677788888 999984
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=256.44 Aligned_cols=218 Identities=23% Similarity=0.338 Sum_probs=179.4
Q ss_pred EEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
..+.+|.+.|++++|+|. ...+||||+.||+|+|||+... ....+..+.+|...|.+++|
T Consensus 47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~~~h~~~v~~v~~ 107 (297)
T 2pm7_B 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG-------------------RWSQIAVHAVHSASVNSVQW 107 (297)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS-------------------CBCCCEEECCCSSCEEEEEE
T ss_pred EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC-------------------ceEEEEEeecCCCceeEEEe
Confidence 467899999999999864 2379999999999999999762 12456778899999999999
Q ss_pred CCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC------------CcEEEEEeCCCcEEE
Q 039302 242 NPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE------------SDVFASCSVDGNIAI 307 (479)
Q Consensus 242 s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------------~~~l~s~s~dg~I~i 307 (479)
+|+ +. +|++|+.||.|++||+....... ...+.+|...|++++|+|++ ..+|++|+.|++|+|
T Consensus 108 ~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 108 APHEYGP-MLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp CCGGGCS-EEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEE
T ss_pred CcCCCCc-EEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEE
Confidence 998 55 99999999999999997653321 23467899999999999973 238999999999999
Q ss_pred EEcCCCCc---eeeEEecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCCceEEEe--ecCCCCeEEEEEe
Q 039302 308 WDTRVGKS---ALMSFKAHNADVNVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYHKHPVTSIEWS 380 (479)
Q Consensus 308 wD~~~~~~---~~~~~~~h~~~v~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~--~~h~~~I~~v~~s 380 (479)
||++.... ....+.+|...|++++|+|++ ..+||+|+.|++|+|||++..... .....+ ..|...|.+++|+
T Consensus 185 wd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s 263 (297)
T 2pm7_B 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP-WKKTLLKEEKFPDVLWRASWS 263 (297)
T ss_dssp EEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-CEEEESSSSCCSSCEEEEEEC
T ss_pred EEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc-cceeeeecccCCCcEEEEEEC
Confidence 99987642 345678999999999999985 489999999999999999875320 012233 5688999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|++ .+||+++.|++|+||+....
T Consensus 264 ~~g-~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 264 LSG-NVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SSS-CCEEEEETTSCEEEEEECTT
T ss_pred CCC-CEEEEEcCCCcEEEEEECCC
Confidence 965 89999999999999998754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=270.29 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=188.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---CCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---GHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l 239 (479)
....+|.+.|++++|+|++..+|++++.||.|++||+.. ..+..+. +|...|.++
T Consensus 112 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~~~~~~~~~v~~~ 169 (383)
T 3ei3_B 112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG----------------------SVIQVFAKTDSWDYWYCCV 169 (383)
T ss_dssp ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS----------------------CEEEEEECCCCSSCCEEEE
T ss_pred eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC----------------------CceEEEeccCCCCCCeEEE
Confidence 344589999999999995448999999999999999985 2223333 345789999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---ce
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK---SA 316 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~---~~ 316 (479)
+|+|++. +|++|+.||.|++||+.. .. ...+.+|...|.+++|+|++..+|++|+.|+.|++||+++.. .+
T Consensus 170 ~~~~~~~-~l~~~~~d~~i~i~d~~~-~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 243 (383)
T 3ei3_B 170 DVSVSRQ-MLATGDSTGRLLLLGLDG-HE----IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243 (383)
T ss_dssp EEETTTT-EEEEEETTSEEEEEETTS-CE----EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred EECCCCC-EEEEECCCCCEEEEECCC-CE----EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence 9999998 999999999999999943 22 245778999999999999998799999999999999999842 23
Q ss_pred eeEEecCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------CCC----------eEEEE
Q 039302 317 LMSFKAHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------KHP----------VTSIE 378 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------~~~----------I~~v~ 378 (479)
+..+ .|...|++++|+| ++ .+|++++.|+.|++||+++.. .+..+.+| ..+ +..++
T Consensus 244 ~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 244 IAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWS----KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317 (383)
T ss_dssp EEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTT----SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEE
T ss_pred EEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCc----cccccccccccccccccceEEeccCCCCceEEE
Confidence 3334 7999999999999 77 899999999999999999887 34444443 233 33455
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
|+|++ .+ +++.|+.|+|||+...... ..+..|.....+..++|+|++. +|++++
T Consensus 318 ~s~dg-~~--s~s~d~~i~iwd~~~~~~~----------------------~~l~~~~~~~~~~~~~~s~~g~-~l~s~s 371 (383)
T 3ei3_B 318 RYPDD-QL--LLNDKRTIDIYDANSGGLV----------------------HQLRDPNAAGIISLNKFSPTGD-VLASGM 371 (383)
T ss_dssp CBCCT-TT--CTTCCCCEEEEETTTCCEE----------------------EEECBTTBCSCCCEEEECTTSS-EEEEEE
T ss_pred ecCCc-cc--ccCCCCeEEEEecCCCcee----------------------eeecCCCCCceEEEEEEecCcc-EEEEec
Confidence 55543 33 6678999999999876310 1122222223477779999996 677777
Q ss_pred CCCceEEeeec
Q 039302 459 ADGFNILMPSN 469 (479)
Q Consensus 459 ~dgi~iw~~~~ 469 (479)
++.|+||++.+
T Consensus 372 d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 GFNILIWNRED 382 (383)
T ss_dssp TTEEEEEECC-
T ss_pred CCcEEEEecCC
Confidence 44499999753
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=266.33 Aligned_cols=254 Identities=14% Similarity=0.126 Sum_probs=207.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|.+.|++++|+|++ .+||+++.+|.|+|||+... ....+..+.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~-------------------~~~~~~~~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGN-------------------KWVQVHELKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETT-------------------EEEEEEEEECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCC-------------------cEEeeeeecCCCCcccEEEEeCC
Confidence 34599999999999998 78899999999999998761 01267788899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEe
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFK 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~ 321 (479)
+. +|++|+.||.|++||+.++.... ...+..|...|.+++|+|++. +|++++.||.|++||++.... ......
T Consensus 64 ~~-~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 64 SN-RIVTCGTDRNAYVWTLKGRTWKP--TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp TT-EEEEEETTSCEEEEEEETTEEEE--EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred CC-EEEEEcCCCeEEEEECCCCeeee--eEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 87 99999999999999997653211 123467889999999999998 999999999999999998753 222236
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC--------------CCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK--------------GGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~--------------~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
.|...|++++|+|++ .+|++|+.||.|++||++... ....++..+..|...|++++|+|++ .+|
T Consensus 140 ~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 217 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRV 217 (372)
T ss_dssp TCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEE
T ss_pred ccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEE
Confidence 788999999999988 899999999999999975211 0123788888999999999999965 899
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
++++.|+.|++||++... .+.....+...|.+++|+|++. +++++.++.+++|++
T Consensus 218 ~~~~~d~~i~i~d~~~~~------------------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKM------------------------AVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTY 272 (372)
T ss_dssp EEEETTTEEEEEEGGGTT------------------------EEEEEECSSCCEEEEEEEETTE-EEEEETTSSCEEEEE
T ss_pred EEEeCCCEEEEEECCCCc------------------------eeEEEccCCCCeEEEEEecCCC-EEEEEeCCeEEEEEc
Confidence 999999999999998763 1222222234799999999985 777775555999999
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
.+
T Consensus 273 ~~ 274 (372)
T 1k8k_C 273 DS 274 (372)
T ss_dssp ET
T ss_pred cC
Confidence 77
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=275.75 Aligned_cols=242 Identities=18% Similarity=0.276 Sum_probs=195.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+....|+|++ .+||+|+.||.|+|||+.. ......+.+|...|++++|+|++. +|+
T Consensus 99 ~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 155 (420)
T 3vl1_A 99 YTAVDTAKLQM-RRFILGTTEGDIKVLDSNF---------------------NLQREIDQAHVSEITKLKFFPSGE-ALI 155 (420)
T ss_dssp EEEEEEECSSS-CEEEEEETTSCEEEECTTS---------------------CEEEEETTSSSSCEEEEEECTTSS-EEE
T ss_pred ceEEEEEecCC-CEEEEEECCCCEEEEeCCC---------------------cceeeecccccCccEEEEECCCCC-EEE
Confidence 34445677777 7899999999999999886 455667789999999999999998 999
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---CCCCE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA---HNADV 327 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~---h~~~v 327 (479)
+|+.||.|++||+.++.. ...+.+|...|.+++|+|++. +|++++.||+|++||+++++ ++..+.. |...|
T Consensus 156 s~s~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSN----PRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGV 229 (420)
T ss_dssp EEETTSEEEEEETTTCCC----CEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCE
T ss_pred EEeCCCeEEEEeCCCCcC----ceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCc
Confidence 999999999999987654 245778999999999999998 99999999999999999875 5555543 34445
Q ss_pred EEE---------------------EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCC
Q 039302 328 NVI---------------------SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 328 ~~l---------------------~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~ 385 (479)
.++ +|+|++ .+|++|+.||.|++||+++.. .+..+ ..|...|++++|+|++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 304 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKE----QTIQLPSKFTCSCNSLTVDGNNAN 304 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCC----EEEEECCTTSSCEEEEEECSSCTT
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCc----eeEEcccccCCCceeEEEeCCCCC
Confidence 544 457777 899999999999999999887 45544 558899999999997744
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
+|++|+.||.|++||++.... +...+..|. ...|..+.|+ ++ .+|++++.|+ |++
T Consensus 305 ~l~~g~~dg~i~vwd~~~~~~---------------------~~~~~~~~~-~~~v~~~~~~-~~-~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 305 YIYAGYENGMLAQWDLRSPEC---------------------PVGEFLINE-GTPINNVYFA-AG-ALFVSSGFDTSIKL 360 (420)
T ss_dssp EEEEEETTSEEEEEETTCTTS---------------------CSEEEEEST-TSCEEEEEEE-TT-EEEEEETTTEEEEE
T ss_pred EEEEEeCCCeEEEEEcCCCcC---------------------chhhhhccC-CCCceEEEeC-CC-CEEEEecCCccEEE
Confidence 999999999999999987631 223333332 2468888666 44 4888899888 999
Q ss_pred Eeeecc
Q 039302 465 LMPSNI 470 (479)
Q Consensus 465 w~~~~~ 470 (479)
|++...
T Consensus 361 w~~~~~ 366 (420)
T 3vl1_A 361 DIISDP 366 (420)
T ss_dssp EEECCT
T ss_pred EeccCC
Confidence 998763
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=273.02 Aligned_cols=336 Identities=14% Similarity=0.196 Sum_probs=225.4
Q ss_pred CceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 039302 71 WPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDD 150 (479)
Q Consensus 71 wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (479)
-+..++.|-|+. .+|++|+ .++.|.||++........
T Consensus 29 ~~V~~v~~s~~g-----------~~la~g~-----~dg~v~iw~~~~~~~~~~--------------------------- 65 (447)
T 3dw8_B 29 DIISTVEFNHSG-----------ELLATGD-----KGGRVVIFQQEQENKIQS--------------------------- 65 (447)
T ss_dssp GSEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECC-----C---------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEEc-----CCCeEEEEEecCCCCCCc---------------------------
Confidence 345678888863 2577764 678999999853211000
Q ss_pred ccCCCCCCceeEEEEecCC------------cceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCccccccccccc----
Q 039302 151 EEEGGSGTPILQLRKVAHQ------------GCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVA---- 213 (479)
Q Consensus 151 ~~~~~~~~p~~~~~~~~H~------------~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~---- 213 (479)
. . .....+...+.+|. +.|++++|+|++. .+|++++.||.|+|||+..............
T Consensus 66 ~-~--~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~ 142 (447)
T 3dw8_B 66 H-S--RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGR 142 (447)
T ss_dssp C-C--CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-----
T ss_pred c-c--ccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCcccc
Confidence 0 0 01233455778998 8899999999874 5788889999999999875321100000000
Q ss_pred --CCCCCccc------------cCCCcEE-ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc----cCCC
Q 039302 214 --GHGAPQVL------------NQSPLVK-FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN----VDPN 274 (479)
Q Consensus 214 --~~~~~~~~------------~~~~~~~-~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~----~~~~ 274 (479)
........ ...+... ..+|...|++++|+|++. +|++| .||.|++||+....... ....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (447)
T 3dw8_B 143 YRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPA 220 (447)
T ss_dssp ---CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCS
T ss_pred ccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccc
Confidence 00000000 0011123 368999999999999987 99998 79999999997433211 1112
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCC------------CEEEEEEcCCCCcE
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNA------------DVNVISWNRLASCL 339 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~------------~v~~l~~~p~~~~~ 339 (479)
.+.+|...|++++|+|++..+|++|+.||.|++||++++.. .+..+..|.. .|++++|+|++ .+
T Consensus 221 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~ 299 (447)
T 3dw8_B 221 NMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RY 299 (447)
T ss_dssp SGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SE
T ss_pred cccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CE
Confidence 47789999999999999844999999999999999998752 1567777775 89999999998 89
Q ss_pred EEEEeCCCeEEEEeCCC-CCCCCceEEEeecCCCC---------------eEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 340 LASGSDDGTFSIHDLRL-LKGGDSVVAHFEYHKHP---------------VTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~h~~~---------------I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
|++++. +.|+|||+++ .. ++..+.+|... +..++|+|++ .+|++|+.||.|+|||+..
T Consensus 300 l~~~~~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 300 MMTRDY-LSVKVWDLNMENR----PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp EEEEES-SEEEEEETTCCSS----CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTT
T ss_pred EEEeeC-CeEEEEeCCCCcc----ccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCC
Confidence 999999 9999999997 54 67788888642 3349999965 8999999999999999987
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCC------------ceEE-eecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPP------------QLLF-IHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~------------~l~~-~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
..... +..... ........++ .+.. .......|..++|||++. +|++++.+++.+|.-
T Consensus 374 ~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 374 KRDIT----LEASRE-NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNNLYIFQD 444 (447)
T ss_dssp CCEEE----EECCST-TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSCEEEEEC
T ss_pred Cccee----eeeccc-ccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC-EEEEEecceeeeecc
Confidence 64210 000000 0000000000 0000 111224689999999996 788888888888864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=274.57 Aligned_cols=311 Identities=14% Similarity=0.130 Sum_probs=218.1
Q ss_pred cccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCC--CCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCC
Q 039302 66 AFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAE--KPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSD 143 (479)
Q Consensus 66 ~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~--~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (479)
.+.+.+|-.++.|.||. .+|++|-... .+-+|.|.||++..-.....
T Consensus 10 ~~~~g~PV~sv~fs~dg-----------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-------------------- 58 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNND-----------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-------------------- 58 (365)
T ss_dssp EEECSSCEEEEEEEETT-----------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHH--------------------
T ss_pred ecCCCCCEEEEEEeCCC-----------cEEEEECCCccccCCCCEEEEEEEcCCCccee--------------------
Confidence 45678999999999983 4677764211 13478999999842100000
Q ss_pred CCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEE-----------eCCceEEEEeCCCCcccccccccc
Q 039302 144 SDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASW-----------ADTGHVQVWDFRSHLNALAESETV 212 (479)
Q Consensus 144 ~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~-----------s~dg~V~iwd~~~~~~~~~~~~~~ 212 (479)
. . ........+.+|...|.++.+.+ .++++| +.|+++++|++...........
T Consensus 59 -------~-~---~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-- 122 (365)
T 4h5i_A 59 -------E-Q---FHILSEFALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-- 122 (365)
T ss_dssp -------H-H---EEEEEEEECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE--
T ss_pred -------e-e---eeeeeEEEccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee--
Confidence 0 0 01222345678999999988765 344444 4577899999876322111000
Q ss_pred cCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE--EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC
Q 039302 213 AGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS--GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP 290 (479)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s--g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 290 (479)
.........+...+.+++|+|++. +|++ |+.|++|+|||+.+..... ...|...|.+|+|+|
T Consensus 123 ----------~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~-----~~~~~~~V~~v~fsp 186 (365)
T 4h5i_A 123 ----------SVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLTEKF-----EIETRGEVKDLHFST 186 (365)
T ss_dssp ----------EECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTEEEE-----EEECSSCCCEEEECT
T ss_pred ----------eeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEE-----EeCCCCceEEEEEcc
Confidence 000111223445688999999998 7654 4578999999998754422 224778899999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCcee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEE
Q 039302 291 TESDVFASCSVDGNIAIWDTRVGKSAL-MSFKAHNADVNVISWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVA 365 (479)
Q Consensus 291 ~~~~~l~s~s~dg~I~iwD~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~ 365 (479)
++. ++++++. +.+++|+..++.... .....|...|.+++|+|++ .++++++.|+ .+++||+...........
T Consensus 187 dg~-~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~ 263 (365)
T 4h5i_A 187 DGK-VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSK 263 (365)
T ss_dssp TSS-EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEE
T ss_pred CCc-eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeee
Confidence 998 8888885 557777777665332 2346788899999999999 8899988887 688999877652112345
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeE
Q 039302 366 HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKEL 444 (479)
Q Consensus 366 ~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v 444 (479)
.+.+|..+|++++|+|++ .+||+|+.|++|+|||+.+.+ .+.....+| ..|++|
T Consensus 264 ~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~------------------------~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS------------------------MSKIFKQAHSFAITEV 318 (365)
T ss_dssp EEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE------------------------EEEEETTSSSSCEEEE
T ss_pred eecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc------------------------EEEEecCcccCCEEEE
Confidence 678899999999999965 999999999999999998763 222222344 479999
Q ss_pred EEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 445 HWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 445 ~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+|+|++. +|+|++.|+ |+||++.
T Consensus 319 ~fSpdg~-~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 319 TISPDST-YVASVSAANTIHIIKLP 342 (365)
T ss_dssp EECTTSC-EEEEEETTSEEEEEECC
T ss_pred EECCCCC-EEEEEeCCCeEEEEEcC
Confidence 9999995 889999999 9999984
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=255.50 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=209.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCceEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEGYA 238 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~ 238 (479)
......+|.+.|++++|+|++ .+|++++ ||.|++||+.... ....+..+. +|...|.+
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~------------------~~~~~~~~~~~~~~~~v~~ 102 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPG------------------NKSPVSQLDCLNRDNYIRS 102 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTT------------------CCSCSEEEECSCTTSBEEE
T ss_pred ccceeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCC------------------ceeeeecccccCCCCcEEE
Confidence 335667999999999999999 6888878 9999999998621 123344444 78899999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++. +|++|+.||.|++||+.+..... ...+..|...|.+++|+|++. +|++++.||.|++||+++.+ .+.
T Consensus 103 ~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~-~~~ 177 (337)
T 1gxr_A 103 CKLLPDGC-TLIVGGEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT-LVR 177 (337)
T ss_dssp EEECTTSS-EEEEEESSSEEEEEECCCC--EE--EEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEE
T ss_pred EEEcCCCC-EEEEEcCCCcEEEEECCCCCcce--eeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCc-eee
Confidence 99999997 99999999999999998754211 244677899999999999988 99999999999999999875 677
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+..|...|.+++|+|++ .+|++++.||.|++||+++.. .+..+. |...+.+++|+|++ .+|++++.|+.|++
T Consensus 178 ~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~----~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 178 QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGR----QLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEV 250 (337)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE----EEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCc----eEeeec-CCCceEEEEECCCC-CEEEEEcCCCcEEE
Confidence 788899999999999998 899999999999999999877 566654 78899999999965 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||+.... ......+...|.+++|+|++. +|++++.++ |++|++.+.
T Consensus 251 ~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 251 LHVNKPD-------------------------KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EETTSSC-------------------------EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC
T ss_pred EECCCCC-------------------------eEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCC
Confidence 9998763 222233335799999999986 677777777 999997653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=265.42 Aligned_cols=220 Identities=17% Similarity=0.214 Sum_probs=183.3
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCce
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEG 236 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v 236 (479)
..+...+.+|.+.|++++|+|+++.+||+|+.||.|+|||+.. ......+. +|...|
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~~~~h~~~v 121 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV---------------------QNKTSFIQGMGPGDAI 121 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS---------------------TTCEEEECCCSTTCBE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC---------------------cccceeeecCCcCCce
Confidence 3455678899999999999999878999999999999999986 34444443 699999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.+++|+|++..+|++|+.||.|++||+....... .....+|...|.+++|+|++. +|++|+.||.|++||++. .+
T Consensus 122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~ 196 (383)
T 3ei3_B 122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQV--FAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG--HE 196 (383)
T ss_dssp EEEEEETTEEEEEEEEETTTEEEEEETTSCEEEE--EECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS--CE
T ss_pred eEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEE--EeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC--CE
Confidence 9999999433399999999999999998532211 122344568899999999998 999999999999999953 36
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+..+..|...|.+++|+|++..+|++|+.|+.|++||+++......++..+ .|...|++++|+|.++.+|++++.|+.|
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 788899999999999999994499999999999999999854323356666 6999999999999444999999999999
Q ss_pred EEEECCCCC
Q 039302 397 TIWDLSLEK 405 (479)
Q Consensus 397 ~iwdl~~~~ 405 (479)
++||++...
T Consensus 276 ~iwd~~~~~ 284 (383)
T 3ei3_B 276 RVYSSYDWS 284 (383)
T ss_dssp EEEETTBTT
T ss_pred EEEECCCCc
Confidence 999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=263.37 Aligned_cols=257 Identities=14% Similarity=0.225 Sum_probs=206.3
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCc-EEecCCCCc
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-VKFGGHKDE 235 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~ 235 (479)
++.....+|.+.|++++|+|++..++++|+. ||.|+|||+.. .+.. ....+|...
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~---------------------~~~~~~~~~~~~~~ 67 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH---------------------GDLKLLREIEKAKP 67 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS---------------------SSEEEEEEEEESSC
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC---------------------CcccceeeecccCc
Confidence 4445667899999999999999888889887 99999999987 2222 223378899
Q ss_pred eEEEEeCCC---CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE------CCCCCcEEEEEeCCCcEE
Q 039302 236 GYAIDWNPV---APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW------SPTESDVFASCSVDGNIA 306 (479)
Q Consensus 236 v~~l~~s~~---~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~------sp~~~~~l~s~s~dg~I~ 306 (479)
|.+++|+|+ +. +|++|+.||.|++||+.+.... ...+.+|...|.++.| +|++. +|++++.||.|+
T Consensus 68 v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~ 142 (357)
T 3i2n_A 68 IKCGTFGATSLQQR-YLATGDFGGNLHIWNLEAPEMP---VYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVK 142 (357)
T ss_dssp EEEEECTTCCTTTC-CEEEEETTSCEEEECTTSCSSC---SEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEE
T ss_pred EEEEEEcCCCCCCc-eEEEecCCCeEEEEeCCCCCcc---EEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEE
Confidence 999999999 45 9999999999999999876521 2457789999999955 67787 999999999999
Q ss_pred EEEcCCCCceeeEEecCCC----CEEEEE----EcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 307 IWDTRVGKSALMSFKAHNA----DVNVIS----WNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~h~~----~v~~l~----~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
+||+++...++..+..|.. .+.+++ |+|++ .+|++|+.||.|++||+++.. . .....|...|++++
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~----~-~~~~~~~~~v~~~~ 216 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA----L-RWETNIKNGVCSLE 216 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE----E-EEEEECSSCEEEEE
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc----e-eeecCCCCceEEEE
Confidence 9999988656677766554 899998 67888 899999999999999999876 3 44567899999999
Q ss_pred EeCC--CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEE--e-ecCCCCeeeEEEeCCCCcE
Q 039302 379 WSPH--EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLF--I-HQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 379 ~sp~--~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~-h~g~~~V~~v~w~p~~~~l 453 (479)
|+|. ++.+|++++.|+.|++||++..... ..+. . ..+...|++++|+|+++.+
T Consensus 217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPT----------------------KGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp ESCSSSSCCEEEEEESTTEEEEEEEEEEETT----------------------TEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred cCCCCCCCCEEEEECCCCeEEEEeCcCCCcc----------------------cceeeeccCCCcCCEEEEEECCCCCcE
Confidence 9993 3489999999999999999876321 1111 1 1223579999999998768
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
+++++.|| |++|++...
T Consensus 275 l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEETTSEEEEEEEECC
T ss_pred EEEEeCCCcEEEeecCCC
Confidence 88888888 999998754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=259.88 Aligned_cols=244 Identities=17% Similarity=0.289 Sum_probs=207.2
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.......+.+|.+.|++++|+|++ .+|++|+.||.|+|||+.. .+.+..+.+|...|.
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~ 78 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLN---------------------GERLGTLDGHTGTIW 78 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTT---------------------CCEEEEECCCSSCEE
T ss_pred cccccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCC---------------------chhhhhhhhcCCcEE
Confidence 556667899999999999999998 7888999999999999987 677888999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRV 312 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~ 312 (479)
+++|+|++. +|++++.||.|++||+.++.... .+. |...|.+++|+|++. +|++++.+ |.|++||++.
T Consensus 79 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~----~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 79 SIDVDCFTK-YCVTGSADYSIKLWDVSNGQCVA----TWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp EEEECTTSS-EEEEEETTTEEEEEETTTCCEEE----EEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEE
T ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE----Eee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecC
Confidence 999999987 99999999999999998765422 233 788999999999998 89999988 9999999987
Q ss_pred CCc----------eeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 313 GKS----------ALMSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 313 ~~~----------~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
... ....+..|.. .+.+++|+|++ .+|++|+.||.|++||+++... ++..+..|...|++++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE---YVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTE---EEEEEECCSSCEEEEEEC
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE---eEEEEecCCCceeEEEEC
Confidence 632 3444556666 89999999998 8999999999999999998432 788999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
|++ .+|++++.|+.|++||+.... .+........+..++|+|++..++++++.+
T Consensus 228 ~~~-~~l~~~~~d~~i~v~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 228 PDL-TYFITSSRDTNSFLVDVSTLQ-------------------------VLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TTS-SEEEEEETTSEEEEEETTTCC-------------------------EEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred CCC-CEEEEecCCceEEEEECCCCc-------------------------eeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 955 999999999999999998763 233333456899999999998666666555
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=250.62 Aligned_cols=246 Identities=18% Similarity=0.256 Sum_probs=200.1
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
.......|.+.|++++|+|++ .+|++++.||.|++|++.... ..+++..+.+|...|.+++
T Consensus 51 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~------------------~~~~~~~~~~~~~~i~~~~ 111 (313)
T 3odt_A 51 LGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATS------------------GEDPLYTLIGHQGNVCSLS 111 (313)
T ss_dssp EEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCT------------------TSCC-CEECCCSSCEEEEE
T ss_pred EEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecC------------------CCCcccchhhcccCEEEEE
Confidence 345677899999999999998 788899999999999997621 2456778889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
| ++. +|++|+.||.|++||. ... ...+..|...|.+++|+|.....|++++.||.|++||.. .....+
T Consensus 112 ~--~~~-~l~~~~~d~~i~~~d~--~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~ 179 (313)
T 3odt_A 112 F--QDG-VVISGSWDKTAKVWKE--GSL----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF 179 (313)
T ss_dssp E--ETT-EEEEEETTSEEEEEET--TEE----EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE
T ss_pred e--cCC-EEEEEeCCCCEEEEcC--CcE----EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE
Confidence 9 344 9999999999999992 111 244678999999999998434499999999999999943 245566
Q ss_pred ec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 321 KA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~-h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.. |...|.+++|+|++ . |++|+.||.|++||+++.+ ++..+.+|..+|++++|+|++ .|++++.|+.|++|
T Consensus 180 ~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iw 251 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIW 251 (313)
T ss_dssp CSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEE
T ss_pred eccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh----hhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEE
Confidence 55 89999999999998 5 9999999999999999887 899999999999999999965 58899999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
|+..... ...+..| ...|.+++|+|++. +++++.++.|++|++.+.
T Consensus 252 d~~~~~~----------------------~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 252 SKENGSL----------------------KQVITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CTTTCCE----------------------EEEEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ECCCCce----------------------eEEEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 9987631 0122222 34799999999986 555444444999998765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=270.26 Aligned_cols=248 Identities=21% Similarity=0.260 Sum_probs=207.9
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ ++++|+.||+|++||+.. .+.+..+.+|...|.+++
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK---------------------GCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCC---------------------CcEEEEECCCCCccEEEE
Confidence 445677999999999999987 888999999999999987 567788999999999999
Q ss_pred eCC--CCCCeEEEEeCCCeEEEEecCCCCcccc-------------------CCCCcccCCCcEEEEEECCCCCcEEEEE
Q 039302 241 WNP--VAPGRLVSGDCNSCIHLWEPASDATWNV-------------------DPNPFIGHAASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 241 ~s~--~~~~~l~sg~~dg~I~lwd~~~~~~~~~-------------------~~~~~~~h~~~V~~l~~sp~~~~~l~s~ 299 (479)
|++ ++. +|++|+.||.|++||+.+...... ....+.+|...|.++. +++. ++++|
T Consensus 211 ~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~ 286 (464)
T 3v7d_B 211 IVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSG 286 (464)
T ss_dssp EEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEE
T ss_pred EecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEE
Confidence 995 444 899999999999999987543210 0123567888898885 5566 99999
Q ss_pred eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 300 s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
+.||.|++||+++.+ ++..+.+|...|.+++|+|++ .+|++|+.||.|++||++++. ++..+.+|...|++++|
T Consensus 287 ~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRL 360 (464)
T ss_dssp ETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEE
Confidence 999999999999875 778888999999999999998 899999999999999999987 89999999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
++ .+|++++.||.|++||+.... .....+ ....+..++|+|++. +++++++
T Consensus 361 ~~---~~l~s~s~dg~v~vwd~~~~~------------------------~~~~~~-~~~~~~~~~~~~~~~-~l~~~~d 411 (464)
T 3v7d_B 361 SD---KFLVSAAADGSIRGWDANDYS------------------------RKFSYH-HTNLSAITTFYVSDN-ILVSGSE 411 (464)
T ss_dssp CS---SEEEEEETTSEEEEEETTTCC------------------------EEEEEE-CTTCCCEEEEEECSS-EEEEEET
T ss_pred cC---CEEEEEeCCCcEEEEECCCCc------------------------eeeeec-CCCCccEEEEEeCCC-EEEEecC
Confidence 84 799999999999999998763 223333 234688889999985 7777775
Q ss_pred CCceEEeeecc
Q 039302 460 DGFNILMPSNI 470 (479)
Q Consensus 460 dgi~iw~~~~~ 470 (479)
+.|++|++.+.
T Consensus 412 g~i~iwd~~~g 422 (464)
T 3v7d_B 412 NQFNIYNLRSG 422 (464)
T ss_dssp TEEEEEETTTC
T ss_pred CeEEEEECCCC
Confidence 55999998664
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=261.02 Aligned_cols=222 Identities=23% Similarity=0.339 Sum_probs=180.6
Q ss_pred eEEEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
+...+.+|.+.|++++|+|. ...+||+|+.||+|+|||+... ....+..+.+|...|.++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~~~h~~~V~~v 109 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG-------------------TWEKSHEHAGHDSSVNSV 109 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS-------------------CCCEEEEECCCSSCCCEE
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC-------------------cceEEEEccCCCCceEEE
Confidence 34567899999999999864 2378999999999999999761 124566788999999999
Q ss_pred EeCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC----------------CcEEEEEeC
Q 039302 240 DWNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE----------------SDVFASCSV 301 (479)
Q Consensus 240 ~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~----------------~~~l~s~s~ 301 (479)
+|+|+ +. +|++|+.||.|++|++.....+.. ...+.+|...|.+++|+|+. ..+|++|+.
T Consensus 110 ~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 187 (316)
T 3bg1_A 110 CWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEV-KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC 187 (316)
T ss_dssp EECCTTTCS-CEEEECSSSCEEEEEECSSSCEEE-CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT
T ss_pred EECCCCCCc-EEEEEcCCCCEEEEecCCCCCcce-eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC
Confidence 99998 44 899999999999999976543321 24567899999999999973 138999999
Q ss_pred CCcEEEEEcCCCC--ceeeEEecCCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 302 DGNIAIWDTRVGK--SALMSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 302 dg~I~iwD~~~~~--~~~~~~~~h~~~v~~l~~~p~~---~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
|++|+|||++... .++..+.+|...|++++|+|++ ..+||+|+.||+|+|||++...........+..|...|++
T Consensus 188 D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~ 267 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH 267 (316)
T ss_dssp TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEE
T ss_pred CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEE
Confidence 9999999998653 2556678999999999999985 3689999999999999998742111123345678999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
++|+|++ .+||+++.|++|+||++...
T Consensus 268 v~~sp~g-~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 268 VSWSITA-NILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEECTTT-CCEEEEESSSCEEEEEECTT
T ss_pred EEEcCCC-CEEEEEcCCCeEEEEEECCC
Confidence 9999965 89999999999999998643
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=261.64 Aligned_cols=281 Identities=15% Similarity=0.259 Sum_probs=207.1
Q ss_pred EEEecCCcceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-----EecCCCCce
Q 039302 163 LRKVAHQGCVNRIRAMS-QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-----KFGGHKDEG 236 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v 236 (479)
..+.+|.+.|++++|+| ++ .+||+|+.||.|+|||+......... ...... ...+|...|
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYY-------------TCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp EECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCE-------------EECEEEEECTTCTTCCSSCE
T ss_pred eeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceE-------------eccccccccccccccCCCcE
Confidence 35668999999999999 77 79999999999999999873111000 000000 013699999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCC
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES--DVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+++|+|++..+|++|+.||.|++||+.++.... ...+...+.++.|+|.+. .++++++.||.|++||++++.
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD-----VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE-----EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce-----eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 9999999554599999999999999998754322 234678899999998643 289999999999999999875
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe---------------ecCCCCeEEEEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF---------------EYHKHPVTSIEW 379 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~---------------~~h~~~I~~v~~ 379 (479)
.+..+..|...|++++|+|++..+|++|+.||.|++||++.... ++..+ ..|...|++++|
T Consensus 178 -~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 178 -CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG---CLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp -CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC---CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred -eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc---ccccccccccccceeeccccccccCceeEEEE
Confidence 67788899999999999999966899999999999999998764 44444 578999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc-CCCC------------------------CCCCceEEe
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV-NAPE------------------------DLPPQLLFI 434 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~-~~~~------------------------~~p~~l~~~ 434 (479)
+|++ .+|++++.|+.|++||+......... ........ .... ......+..
T Consensus 254 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 254 TSDG-LHLLTVGTDNRMRLWNSSNGENTLVN---YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTCCBCCCC---CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred cCCC-CEEEEecCCCeEEEEECCCCccceec---cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence 9954 99999999999999999876421000 00000000 0000 001122222
Q ss_pred ecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 435 HQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 435 h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
..+| ..|++++|+|++. +|++++.|| |++|++.+..
T Consensus 330 ~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp ECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC--
T ss_pred eccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCC
Confidence 2333 4799999999986 777787777 9999997763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=288.79 Aligned_cols=251 Identities=22% Similarity=0.290 Sum_probs=212.8
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...|.+++
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~---------------------~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEE
T ss_pred eEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEecCCCCEEEEE
Confidence 345677899999999999999 7888999999999999987 677888999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
|+|++. +|++|+.||.|++|++.++.... ..+.+|...|.+++|+| ++. .|++++.||.|++||++... ....
T Consensus 105 ~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~-~~~~ 178 (814)
T 3mkq_A 105 VHPTKP-YVLSGSDDLTVKLWNWENNWALE---QTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQST-PNFT 178 (814)
T ss_dssp ECSSSS-EEEEEETTSEEEEEEGGGTSEEE---EEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSS-CSEE
T ss_pred EeCCCC-EEEEEcCCCEEEEEECCCCceEE---EEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-ceeE
Confidence 999998 99999999999999997753322 45678999999999999 555 99999999999999998876 4444
Q ss_pred Ee-cCCCCEEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 320 FK-AHNADVNVISWNR--LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 320 ~~-~h~~~v~~l~~~p--~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+. .+...+++++|+| ++ .+|++|+.||.|++||+++.. ++..+.+|...|++++|+|++ .+|++++.||.|
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v 252 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTL 252 (814)
T ss_dssp EECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCE
T ss_pred EecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeE
Confidence 44 4448899999999 77 899999999999999999877 788999999999999999965 899999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE-EEEEcCCCceEEeeec
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM-IVSTAADGFNILMPSN 469 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l-l~s~~~dgi~iw~~~~ 469 (479)
++||+.... .+.....+...|.+++|+|++..+ +++++++++.+|++..
T Consensus 253 ~vwd~~~~~------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 253 KIWNSSTYK------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEEETTTCS------------------------EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEEECCCCc------------------------EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 999998763 122222223579999999998654 7778877788888654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=274.32 Aligned_cols=267 Identities=13% Similarity=0.246 Sum_probs=201.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC------------C
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK------------D 234 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 234 (479)
.|.+.|++++|+|++ .+||+|+.||.|+||++......... ..........+.+|. .
T Consensus 26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~----------~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSH----------SRGEYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CC----------CCCCEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcc----------cccceeEecccccccccccccccccccC
Confidence 467899999999998 78999999999999999863210000 000123467888998 8
Q ss_pred ceEEEEeCCCCC-CeEEEEeCCCeEEEEecCCCCcccc------------------C------------------CCCcc
Q 039302 235 EGYAIDWNPVAP-GRLVSGDCNSCIHLWEPASDATWNV------------------D------------------PNPFI 277 (479)
Q Consensus 235 ~v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~~~~~~------------------~------------------~~~~~ 277 (479)
.|.+++|+|++. .+|++|+.||.|++|++.+...... . .....
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 899999999983 2899999999999999865321000 0 01135
Q ss_pred cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee-------EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEE
Q 039302 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM-------SFKAHNADVNVISWNRLASCLLASGSDDGTFS 350 (479)
Q Consensus 278 ~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~ 350 (479)
+|...|.+++|+|++. +|++| .||.|++||++.....+. .+..|...|++++|+|++..+|++|+.||.|+
T Consensus 175 ~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 175 AHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp CCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred CCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 7999999999999988 89998 799999999995433333 25689999999999999878999999999999
Q ss_pred EEeCCCCCCCCceEEEeecCCC------------CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcc
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKH------------PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTR 418 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~------------~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~ 418 (479)
+||+++.......+..+..|.. .|++++|+|++ .+|++++. +.|+|||++....
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~------------ 318 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENR------------ 318 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSS------------
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcc------------
Confidence 9999988732223788888876 99999999955 89999998 9999999987321
Q ss_pred cccCCCCCCCCceEEeecCCC-------------CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 419 EQVNAPEDLPPQLLFIHQGQK-------------DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 419 ~~~~~~~~~p~~l~~~h~g~~-------------~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+...+..|.... .+..++|+|++. +|++++.|| |++|++.+.
T Consensus 319 ---------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 319 ---------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp ---------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTC
T ss_pred ---------ccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCC
Confidence 123334443111 134599999996 668888888 999998643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=281.49 Aligned_cols=256 Identities=12% Similarity=0.128 Sum_probs=194.4
Q ss_pred EecCCcceeEEEEecCC-C-------cEEEE-------------------EeCCceEEEEeCCCCcccccccccccCCCC
Q 039302 165 KVAHQGCVNRIRAMSQN-P-------HICAS-------------------WADTGHVQVWDFRSHLNALAESETVAGHGA 217 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~-~-------~~lat-------------------~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 217 (479)
...+.+.|.+|+|+|++ . .+||+ ++.||+|+||++.....
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~------------- 195 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL------------- 195 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC-------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC-------------
Confidence 34478999999999986 1 45555 55789999999876110
Q ss_pred CccccCCCcEEecCCCCceEEEEeCCCC-----CCeEEEEeCCCeEEEEecCCCCcc-------ccCCCCcccCCCcEEE
Q 039302 218 PQVLNQSPLVKFGGHKDEGYAIDWNPVA-----PGRLVSGDCNSCIHLWEPASDATW-------NVDPNPFIGHAASVED 285 (479)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~~l~sg~~dg~I~lwd~~~~~~~-------~~~~~~~~~h~~~V~~ 285 (479)
......++.+|.+.|++|+|+|.+ .++||+|+.||+|+|||+...... ......+.+|...|++
T Consensus 196 ----~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~s 271 (524)
T 2j04_B 196 ----HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITT 271 (524)
T ss_dssp ----CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEE
T ss_pred ----CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEE
Confidence 001124567788899999999972 239999999999999999765321 0011246789999999
Q ss_pred EEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE--EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI--SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 286 l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l--~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
++|++. . .|++|+.||+|++||++++..+...+.+|...|++| +|+|++..+||||+.|++|+|||+++.+ +
T Consensus 272 v~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~----~ 345 (524)
T 2j04_B 272 FDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA----T 345 (524)
T ss_dssp EEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH----H
T ss_pred EEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC----c
Confidence 999985 3 799999999999999998755666788999999999 5677654799999999999999999877 5
Q ss_pred EEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCe
Q 039302 364 VAHFEYHKH--PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDL 441 (479)
Q Consensus 364 ~~~~~~h~~--~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V 441 (479)
+..+.+|.. .|++++|+|++ ..|++++.|++|++||++.... ...+..|. ..|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~----------------------~~~l~gH~--~~V 400 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFA----------------------VHPLVSRE--TTI 400 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTC----------------------CEEEEECS--SCE
T ss_pred ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccccc----------------------ceeeecCC--Cce
Confidence 566666653 58999999965 7899999999999999987632 12233443 579
Q ss_pred eeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 442 KELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 442 ~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++|+|+|+++ +|+|++.|+ |++|++..
T Consensus 401 ~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 401 TAIGVSRLHP-MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEECCSSCC-BCEEEETTTEEECCBSCS
T ss_pred EEEEeCCCCC-eEEEEECCCEEEEEechH
Confidence 9999999997 677888888 99998643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=294.71 Aligned_cols=263 Identities=19% Similarity=0.280 Sum_probs=210.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||.|+|||+... ....+..+.+|...|++++|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~-------------------~~~~~~~l~~h~~~V~~l~~s 62 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 62 (753)
T ss_dssp -----CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETT-------------------EEEEEEEECCCSSCEEEEEEC
T ss_pred eecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCC-------------------CCccceeccCCcCceEEEEec
Confidence 3567999999999999998 68889999999999998741 145677889999999999999
Q ss_pred CC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-ee
Q 039302 243 PV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS-AL 317 (479)
Q Consensus 243 ~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~-~~ 317 (479)
++ +. +|++|+.||.|++||+.++.... ...+.+|...|.+++|+|+ +. +|++|+.||.|++||++.... ..
T Consensus 63 ~~~~~~-~l~s~s~Dg~I~vwd~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 63 HPKFGT-ILASCSYDGKVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp CTTSCS-EEEEEETTSCEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCC
T ss_pred CCCCCC-EEEEEeCCCeEEEEECCCCcccc--cccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcce
Confidence 88 65 99999999999999998753211 2456789999999999999 76 999999999999999998732 45
Q ss_pred eEEecCCCCEEEEEEcCC------------CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 318 MSFKAHNADVNVISWNRL------------ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~------------~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
..+..|...|.+++|+|. ++.+|++|+.||.|++||++.......++..+.+|..+|++++|+|++
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 566889999999999995 238999999999999999998753234677888999999999999973
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
+.+|++|+.||.|++||+...... ....+.....+...|++++|+|++. ++++++.|| |
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~~~~-------------------~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I 278 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNEQGP-------------------WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKV 278 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSSSSC-------------------CBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCE
T ss_pred CCEEEEEecCCEEEEecCCCCCCc-------------------ceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEE
Confidence 699999999999999999876310 0001111112234799999999986 666666677 9
Q ss_pred eEEeeec
Q 039302 463 NILMPSN 469 (479)
Q Consensus 463 ~iw~~~~ 469 (479)
++|++..
T Consensus 279 ~vwd~~~ 285 (753)
T 3jro_A 279 TLWKENL 285 (753)
T ss_dssp ECCBCCS
T ss_pred EEEecCC
Confidence 9999874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=266.43 Aligned_cols=255 Identities=16% Similarity=0.247 Sum_probs=207.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC-CCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP-VAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~ 247 (479)
....+.++++|+...++++++.+|.|+||++..... ....+..+.+|...|++++|+| ++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-----------------~~~~~~~~~~h~~~V~~~~~~p~~~~- 95 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-----------------VDKNVPLVCGHTAPVLDIAWCPHNDN- 95 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-----------------CCTTCCCBCCCSSCEEEEEECTTCTT-
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-----------------CCCCCceEecCCCCEEEEEeCCCCCC-
Confidence 345667899998866777889999999999976211 1234556789999999999999 665
Q ss_pred eEEEEeCCCeEEEEecCCCCccc---cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--ec
Q 039302 248 RLVSGDCNSCIHLWEPASDATWN---VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--KA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--~~ 322 (479)
+|++|+.||.|+||++.++.... .....+.+|...|.+++|+|++.++|++|+.||.|+|||+++++ .+..+ ..
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~ 174 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDV 174 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTT
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCC
Confidence 99999999999999998753211 11345778999999999999986699999999999999999875 66777 78
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCC-eEEEEEeCCCCCEEEEE---eCCCcEE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHP-VTSIEWSPHEGSTLAVS---SADNQLT 397 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~-I~~v~~sp~~~~~las~---s~Dg~I~ 397 (479)
|...|++++|+|++ .+|++|+.||.|++||+++.. .+..+ ..|... +.++.|+|++ .+|++| +.|+.|+
T Consensus 175 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 175 HPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVA 248 (402)
T ss_dssp CCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEE
T ss_pred CCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEE
Confidence 99999999999988 899999999999999999987 77777 788876 8999999964 899998 7899999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+||++.... + .......+...|..++|+|++..++++++.|+ |++|++.+.
T Consensus 249 iwd~~~~~~---------------------~-~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 249 LWDTKHLEE---------------------P-LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EEETTBCSS---------------------C-SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred EEcCccccC---------------------C-ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 999987632 1 12223233457999999999987777787676 999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-30 Score=246.62 Aligned_cols=250 Identities=23% Similarity=0.361 Sum_probs=202.9
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.......+|...|++++|+|++ .+||+|+.||+|+||++.. .+.+..+.+|...+.++
T Consensus 58 ~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~---------------------~~~~~~~~~h~~~~~~~ 115 (318)
T 4ggc_A 58 LQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ---------------------QKRLRNMTSHSARVGSL 115 (318)
T ss_dssp EEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCC---------------------ceeEEEecCccceEEEe
Confidence 3334566889999999999999 7889999999999999987 67788899999988887
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---e
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---A 316 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~ 316 (479)
.+.+ . .|++|+.++.+++|+........ ..+.+|...+..+.|++.+. +|++++.||+|++||+++++. .
T Consensus 116 ~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 116 SWNS--Y-ILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp EEET--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCC
T ss_pred ecCC--C-EEEEEecCCceEeeecCCCceeE---EEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccc
Confidence 7654 4 89999999999999987654322 45678999999999999998 999999999999999998642 3
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEE--EEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE--eC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLL--ASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS--SA 392 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l--~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~--s~ 392 (479)
......+...|.++.++|.+..++ ++|+.++.|++||.+... .. ....|...+..+.|+|.+ ..++++ +.
T Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----~~-~~~~~~~~v~~~~~~~~~-~~~~~~sg~~ 262 (318)
T 4ggc_A 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CL-SAVDAHSQVCSILWSPHY-KELISGHGFA 262 (318)
T ss_dssp SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----EE-EEEECSSCEEEEEEETTT-TEEEEEECTT
T ss_pred eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----cc-ccccceeeeeeeeecccc-cceEEEEEcC
Confidence 445567888999999999886665 456788999999998876 33 345578889999999977 544443 37
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+.|+|||+.+.. ++....+| ..|++++|+|++. +|+|++.|+ |+||++..+
T Consensus 263 d~~i~iwd~~~~~-------------------------~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 263 QNQLVIWKYPTMA-------------------------KVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TCCEEEEETTTCC-------------------------EEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEECCCCc-------------------------EEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence 9999999998763 23333344 4799999999986 788888888 999998654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=268.16 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=171.3
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC--------CCCCeEEEEeC
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP--------VAPGRLVSGDC 254 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------~~~~~l~sg~~ 254 (479)
.+||+++.|++|+|||+...... ...++..+.+|.+.|++++|+| ++. +||||+.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~ 164 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETII----------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGD 164 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEE----------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEET
T ss_pred CEEEEEeCCCcEEEEECCCCccc----------------eeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEEC
Confidence 78999999999999998762110 0123345789999999999998 565 9999999
Q ss_pred CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-----------------
Q 039302 255 NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL----------------- 317 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~----------------- 317 (479)
|++|+|||+.+.... ..+.+|...|.+++|+|++.++|++|+.||+|++||+++++...
T Consensus 165 D~tv~~Wd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPI----LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp TSEEEEEEEETTEEE----EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred CCeEEEEECCCCcee----eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 999999999775432 34667889999999999987789999999999999998864211
Q ss_pred -------eEEecCCCCEEEEEEc-CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE------------
Q 039302 318 -------MSFKAHNADVNVISWN-RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI------------ 377 (479)
Q Consensus 318 -------~~~~~h~~~v~~l~~~-p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v------------ 377 (479)
....+|...+.++.|. +++ ..|++++.|+++++||++... ....+..|...+..+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANN----DYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSS
T ss_pred cccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCC----CCceEeeecCccccEEEcccccccccc
Confidence 1124577788999987 566 899999999999999998766 344444444333333
Q ss_pred ------EEeC-CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 378 ------EWSP-HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 378 ------~~sp-~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.|+| .++.++++|+.||+|+|||+..... +.....++..|.+++|||++
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~------------------------~~~~~~~~~~V~svafspdG 371 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS------------------------NSIPIQLGMPIVDFCWHQDG 371 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC------------------------CEEEEECSSCEEEEEECTTS
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEecCCCCcEEEEEEcCCC
Confidence 3333 3434677888899999999987642 22223334689999999999
Q ss_pred CcEEEEEcCCCceEEeeeccCC
Q 039302 451 PGMIVSTAADGFNILMPSNIQS 472 (479)
Q Consensus 451 ~~ll~s~~~dgi~iw~~~~~~~ 472 (479)
. +||+++++|+.+|++....+
T Consensus 372 ~-~LA~as~~Gv~lvrL~gf~~ 392 (393)
T 4gq1_A 372 S-HLAIATEGSVLLTRLMGFTR 392 (393)
T ss_dssp S-EEEEEESSEEEEEEEGGGCC
T ss_pred C-EEEEEeCCCeEEEEEeCccc
Confidence 6 78889999999999876643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=262.51 Aligned_cols=227 Identities=21% Similarity=0.335 Sum_probs=191.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++..+|++|+.||.|+||++........ ...+...+.+|...|.+++|+
T Consensus 175 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~~ 240 (430)
T 2xyi_A 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------------VIDAKNIFTGHTAVVEDVAWH 240 (430)
T ss_dssp EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG--------------EEECSEEECCCSSCEEEEEEC
T ss_pred EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------eeccceeecCCCCCEeeeEEe
Confidence 467799999999999999966999999999999999987311100 123456788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+..+|++|+.||.|++||+++..... ....+..|...|++++|+|++.++|++|+.||.|++||++....++..+..
T Consensus 241 p~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 241 LLHESLFGSVADDQKLMIWDTRNNNTSK-PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCSCSSS-CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCc-ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 9655599999999999999998753211 123456899999999999999878999999999999999986667888899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
|...|++++|+|++..+|++|+.||.|+|||++..... ...+..+.+|...|++++|+|++..+|++++.
T Consensus 320 h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence 99999999999999789999999999999999873311 13778888999999999999977559999999
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
||.|+||++...
T Consensus 400 dg~i~iw~~~~~ 411 (430)
T 2xyi_A 400 DNIMQVWQMAEN 411 (430)
T ss_dssp TSEEEEEEECHH
T ss_pred CCCEEEeEcccc
Confidence 999999999753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=264.42 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=205.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++++|+| .+|++|+.||.|+||++....... ....+..+.+|...|.+++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~~h~~~v~~~~ 69 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN---------------PKDKSYSHFVHKSGLHHVD 69 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC---------------GGGGEEEEECCTTCEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc---------------CCCcceEEecCCCcEEEEE
Confidence 3445679999999999998 588999999999999998721100 1236778889999999999
Q ss_pred eCCC----C---CCeEEEEeCCCeEEEEecCCCCccc-cCCCCcccC-----CCcEEEEEEC----CCCCcE-EEEEeCC
Q 039302 241 WNPV----A---PGRLVSGDCNSCIHLWEPASDATWN-VDPNPFIGH-----AASVEDLQWS----PTESDV-FASCSVD 302 (479)
Q Consensus 241 ~s~~----~---~~~l~sg~~dg~I~lwd~~~~~~~~-~~~~~~~~h-----~~~V~~l~~s----p~~~~~-l~s~s~d 302 (479)
|+|+ + . +|++|+.||.|++|++.+..... .....+..| ...|.+++|+ |++. + |++++.|
T Consensus 70 ~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~d 147 (397)
T 1sq9_A 70 VLQAIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVK 147 (397)
T ss_dssp EEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETT
T ss_pred EecccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCC
Confidence 9999 7 7 99999999999999998755310 001335566 5899999999 9988 7 9999999
Q ss_pred CcEEEEEcCC------CCceee-----EE-------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE
Q 039302 303 GNIAIWDTRV------GKSALM-----SF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 303 g~I~iwD~~~------~~~~~~-----~~-------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~ 364 (479)
|.|++||++. .. .+. .+ ..|...|.+++|+|++ +|++|+.||.|++||+++.. ++
T Consensus 148 g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~----~~ 220 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR----PL 220 (397)
T ss_dssp SCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE----EE
T ss_pred CcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc----ee
Confidence 9999999998 43 333 55 4488999999999988 99999999999999999877 78
Q ss_pred EEeec---C---CCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe-
Q 039302 365 AHFEY---H---KHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI- 434 (479)
Q Consensus 365 ~~~~~---h---~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~- 434 (479)
..+.. | ..+|++++|+|++ .+|++++.| +.|++||++..... ..+..
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~----------------------~~~~~~ 277 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI----------------------GSLSVP 277 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE----------------------EEECBC
T ss_pred EEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCccc----------------------ceeccC
Confidence 89998 9 9999999999965 999999999 99999999876311 11111
Q ss_pred ----------ecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 435 ----------HQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 435 ----------h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..+...|.+++|+|++. +|++++.|+ |++|++.+.
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred cccccccccccccCCcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence 00235799999999986 777777777 999998543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=259.64 Aligned_cols=250 Identities=21% Similarity=0.312 Sum_probs=204.4
Q ss_pred CceeEEEEecCCcce--eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCC
Q 039302 158 TPILQLRKVAHQGCV--NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKD 234 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V--~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~ 234 (479)
.|.......+|...+ +++.|++ .. +++++.||.|+|||+.. ......+.. |..
T Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~---------------------~~~~~~~~~~~~~ 135 (401)
T 4aez_A 80 TPERVLDAPGIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADS---------------------GSVSALAETDEST 135 (401)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTT---------------------CCEEEEEECCTTC
T ss_pred CcceeeeCCCCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCC---------------------CcEeEeeecCCCC
Confidence 444545556777664 4566665 23 45668999999999987 444445544 788
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|.+++|+|++. +|++|+.||.|++||+.++... ..+.+|...|.+++|+ +. +|++|+.||.|++||++...
T Consensus 136 ~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 136 YVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTKL----RTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSS
T ss_pred CEEEEEECCCCC-EEEEECCCCeEEEEECcCCeEE----EEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCc
Confidence 999999999997 9999999999999999876542 3466899999999995 34 99999999999999999766
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe--C
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS--A 392 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s--~ 392 (479)
..+..+..|...|.+++|+|++ .+|++|+.||.|++||+++.. ++..+..|...|++++|+|++..++++++ .
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 208 HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 6778889999999999999988 899999999999999999877 78889999999999999998878888876 7
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCC-ceEEeeec
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADG-FNILMPSN 469 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dg-i~iw~~~~ 469 (479)
|+.|++||+.... .+....++..|.+++|+|++..++++++ .+| |.+|++.+
T Consensus 283 d~~i~i~d~~~~~-------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 283 DKQIHFWNAATGA-------------------------RVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp TCEEEEEETTTCC-------------------------EEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCEEEEEECCCCC-------------------------EEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 9999999998763 2233334467999999999975555533 566 99999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=286.49 Aligned_cols=249 Identities=17% Similarity=0.256 Sum_probs=213.4
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+||+++.+|.|+|||+.. +..+..+.+|...|.+++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~---------------------~~~~~~~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYET---------------------QVEVRSIQVTETPVRAGKF 63 (814)
T ss_dssp EEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEEEE
T ss_pred ceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCC---------------------CceEEEEecCCCcEEEEEE
Confidence 35778999999999999999 7888999999999999987 5677888899999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+|++. +|++|+.||.|++||+.++... ..+.+|...|.+++|+|+++ +|++++.||.|++||++++......+.
T Consensus 64 s~~~~-~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 137 (814)
T 3mkq_A 64 IARKN-WIIVGSDDFRIRVFNYNTGEKV----VDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFE 137 (814)
T ss_dssp EGGGT-EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred eCCCC-EEEEEeCCCeEEEEECCCCcEE----EEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEc
Confidence 99998 9999999999999999876542 34678999999999999998 899999999999999998755677788
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeC--CCCCEEEEEeCCCcEEE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSP--HEGSTLAVSSADNQLTI 398 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp--~~~~~las~s~Dg~I~i 398 (479)
.|...|.+++|+|.++.+|++|+.||.|++||++... ....+.. |...|++++|+| ++ .+|++++.|+.|++
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~ 212 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKI 212 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEE
Confidence 9999999999999433899999999999999998877 4555554 448999999999 54 89999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
||+.... .+....+ ...|.+++|+|+++ ++++++.|| |++|++.+
T Consensus 213 ~d~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 213 WDYQTKS-------------------------CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EETTTTE-------------------------EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT
T ss_pred EECCCCc-------------------------EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence 9998763 2222222 35799999999996 777777777 99998765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=259.78 Aligned_cols=264 Identities=17% Similarity=0.218 Sum_probs=200.3
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeC----CCCccccc--ccccccCCCCCccccCCCcEEecCCCC
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDF----RSHLNALA--ESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
.......|.+.|++++|+|++..+||+|+.||.|+||++ ........ ....... .........+|..
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-------PFALSASSGKTTN 109 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-------CCCCC------CB
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-------cccccccccCCCC
Confidence 334566778999999999999549999999999999999 55210000 0000000 0000111223788
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|++++|+|++. +|++|+.||.|++|+. ++.. ...+.+|...|.+++|+|++. +|++++.||.|++||+++++
T Consensus 110 ~v~~~~~s~~~~-~l~~~~~dg~i~i~~~-~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 110 QVTCLAWSHDGN-SIVTGVENGELRLWNK-TGAL----LNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEET-TSCE----EEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTE
T ss_pred ceEEEEEcCCCC-EEEEEeCCCeEEEEeC-CCCe----eeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCc
Confidence 999999999998 9999999999999994 3222 244678999999999999998 99999999999999997653
Q ss_pred c-------------------------------------------------------eeeEEecCCCCEEEEEEcCCCCcE
Q 039302 315 S-------------------------------------------------------ALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 315 ~-------------------------------------------------------~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
. ++..+..|...|.+++|+|++ .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CE
Confidence 1 112344678899999999998 89
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccc
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTRE 419 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~ 419 (479)
|++++.||.|++||+++.. ++..+..|...|++++|+|++ +|++++.|+.|++||+....
T Consensus 262 l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~-------------- 321 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGN----SQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT-------------- 321 (425)
T ss_dssp EEEEETTSCEEEECSSSBS----CSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE--------------
T ss_pred EEEEcCCCEEEEEECCCCc----cceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--------------
Confidence 9999999999999999887 788889999999999999954 99999999999999998763
Q ss_pred ccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 420 QVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 420 ~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
.+....+ ...|.+++|+|++. +|++++.+| |.+|++.+..
T Consensus 322 -----------~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 322 -----------LLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp -----------EEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred -----------EeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence 2222222 35799999999986 666777776 9999987543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=257.76 Aligned_cols=253 Identities=16% Similarity=0.268 Sum_probs=195.2
Q ss_pred EEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc-EEecCCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-VKFGGHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l 239 (479)
..+.+|.+.|++++|+|++ ..+|++|+.||.|+|||+... ...+ ..+.+|...|.++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--------------------~~~~~~~~~~h~~~v~~~ 92 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--------------------GQTIPKAQQMHTGPVLDV 92 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--------------------SCEEEEEEEECSSCEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--------------------CceeEEEeccccCCEEEE
Confidence 3567999999999999994 489999999999999999861 2333 6788899999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE--CCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW--SPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+|+|++. +|++|+.||.|++||+.++.. ..+.+|...|.+++| +|++. +|++++.||.|++||+++.+ ++
T Consensus 93 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~ 164 (368)
T 3mmy_A 93 CWSDDGS-KVFTASCDKTAKMWDLSSNQA-----IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSN-PM 164 (368)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSS-CS
T ss_pred EECcCCC-EEEEEcCCCcEEEEEcCCCCc-----eeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCc-EE
Confidence 9999998 999999999999999987543 235679999999999 88887 89999999999999999875 44
Q ss_pred eEEecCC-----------------------------------------CCEEEEEEcCCC---CcEEEEEeCCCeEEEEe
Q 039302 318 MSFKAHN-----------------------------------------ADVNVISWNRLA---SCLLASGSDDGTFSIHD 353 (479)
Q Consensus 318 ~~~~~h~-----------------------------------------~~v~~l~~~p~~---~~~l~sgs~dg~i~iwD 353 (479)
..+..+. ..+.++++.+.. +..+++|+.||.|++||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 165 MVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred EEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 4443322 233444443332 12399999999999999
Q ss_pred CCCCCCCCceEEEeecCCC------------CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc
Q 039302 354 LRLLKGGDSVVAHFEYHKH------------PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV 421 (479)
Q Consensus 354 lr~~~~~~~~~~~~~~h~~------------~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 421 (479)
++.... ...+..+..|.. +|++++|+|++ .+|++++.||.|++||+....
T Consensus 245 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~---------------- 306 (368)
T 3mmy_A 245 INPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART---------------- 306 (368)
T ss_dssp SSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE----------------
T ss_pred cCCCCc-cccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc----------------
Confidence 988731 125677777776 79999999965 899999999999999998763
Q ss_pred CCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 422 NAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 422 ~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
++....+ ...|++++|+|++..++++++++..+.|++++.
T Consensus 307 ---------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 307 ---------KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp ---------EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred ---------EEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 2222223 357999999999975544444443555555443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=267.61 Aligned_cols=271 Identities=13% Similarity=0.149 Sum_probs=191.2
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--C--CCCceEEEE-
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--G--HKDEGYAID- 240 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~v~~l~- 240 (479)
.+|.+.|++++|+|++ .+|++|+.||.|+|||+........ .. ......+..+. . +...+.++.
T Consensus 108 ~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~-~~---------~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 108 YDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESE-VK---------FLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp EECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTE-EE---------EEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred ccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCce-ee---------ccccceeEEEEccCcccccCceEEEE
Confidence 3699999999999988 7889999999999999953100000 00 00011122221 1 455677777
Q ss_pred -eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc--CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 241 -WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG--HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 241 -~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++++. +|++|+.||.|++||+.++... ..+.+ |...|++++|+|++. +|++|+.||.|++||++++. ++
T Consensus 177 ~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~ 249 (437)
T 3gre_A 177 FVNEEKS-LLVALTNLSRVIIFDIRTLERL----QIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNV-LI 249 (437)
T ss_dssp EECSSCE-EEEEEETTSEEEEEETTTCCEE----EEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTE-EE
T ss_pred EEcCCCC-EEEEEeCCCeEEEEeCCCCeee----EEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCcc-EE
Confidence 557776 9999999999999999876542 33455 889999999999988 99999999999999999874 66
Q ss_pred eEEe-cCCCCEEEEEEcC----CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-----------------------
Q 039302 318 MSFK-AHNADVNVISWNR----LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----------------------- 369 (479)
Q Consensus 318 ~~~~-~h~~~v~~l~~~p----~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----------------------- 369 (479)
..+. .|...|++++|+| ++ .+|++|+.||.|++||++++. .+..+.+
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGH----CQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTE----EEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCc----EEEEEEcCCCCCccceecccccccccceec
Confidence 6664 7888999997765 44 799999999999999999877 5665553
Q ss_pred ---CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc------------------CCCCCCC
Q 039302 370 ---HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV------------------NAPEDLP 428 (479)
Q Consensus 370 ---h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~------------------~~~~~~p 428 (479)
|...|++++|++ + .+|++|+.|+.|++||+........ +.++..... .......
T Consensus 325 ~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (437)
T 3gre_A 325 GIRSLNALSTISVSN-D-KILLTDEATSSIVMFSLNELSSSKA---VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHS 399 (437)
T ss_dssp CCCSGGGGCCEEEET-T-EEEEEEGGGTEEEEEETTCGGGCEE---EECC--CCCEEEEEEEETTEEEEEEECC------
T ss_pred ccccCCceEEEEECC-c-eEEEecCCCCeEEEEECCCcccceE---EecccccCceEEEEEeecceEEEEEecccccccc
Confidence 556688899993 4 8999999999999999987642100 000000000 0000000
Q ss_pred CceEEeecCCCCeeeEEEeCC-CCcEEEEEcCCC-ceEEe
Q 039302 429 PQLLFIHQGQKDLKELHWHTQ-VPGMIVSTAADG-FNILM 466 (479)
Q Consensus 429 ~~l~~~h~g~~~V~~v~w~p~-~~~ll~s~~~dg-i~iw~ 466 (479)
......| ...|++++|++. ...+|++++.|| |+||+
T Consensus 400 ~~~~~~h--~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 400 VDDSLYH--HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cCccccc--ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0011112 357999999998 335899999999 99995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-30 Score=253.49 Aligned_cols=211 Identities=19% Similarity=0.317 Sum_probs=179.1
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+|.+.|++++|+|++..+|++++.||.|++||+.. .+.+..+. +...+.++.|++.+.
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT---------------------LQTADVFN-FEETVYSHHMSPVST 154 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT---------------------TEEEEEEE-CSSCEEEEEECSSCS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC---------------------Cccceecc-CCCceeeeEeecCCC
Confidence 59999999999996668999999999999999987 44555554 677899999998653
Q ss_pred C--eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----
Q 039302 247 G--RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---- 320 (479)
Q Consensus 247 ~--~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---- 320 (479)
. +|++|+.+|.|++||+.++.. ...+.+|...|.+++|+|++..+|++|+.||.|++||++....++..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSC----SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCC----CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred CCcEEEEEcCCCeEEEEeCCCcce----eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 3 899999999999999987544 245678999999999999998779999999999999999876444444
Q ss_pred -----------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC------------------------------
Q 039302 321 -----------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG------------------------------ 359 (479)
Q Consensus 321 -----------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~------------------------------ 359 (479)
..|...|++++|+|++ .+|++|+.||.|++||+++...
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred cccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 5788999999999998 8999999999999999987541
Q ss_pred -------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 360 -------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 360 -------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
...++..+.+|...|++++|+|++ .+|++++.||.|++||+....
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC--
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCC
Confidence 124577788899999999999965 999999999999999999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-29 Score=253.49 Aligned_cols=250 Identities=16% Similarity=0.122 Sum_probs=198.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCC--CCcccccccccccCCCCCccccCCCcEEec--CCCCceEEEE
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFR--SHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEGYAID 240 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~ 240 (479)
..+|.+.|++++|+|++..++|+|+.||.|+|||+. . ...+..+. .|...|.+++
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~---------------------~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS---------------------KNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS---------------------SSCEEEEEEEECSSCEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC---------------------CceeeeeecccCCCCceEEE
Confidence 347888999999999996667999999999999998 4 45556665 5678999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---ESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
|+|++. +|++|+.+|.|++|++.+..........+.+|...|++++|+|+ +. +|++|+.|++|++||++++. .+
T Consensus 157 ~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~-~~ 233 (450)
T 2vdu_B 157 IAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCF-IV 233 (450)
T ss_dssp ECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTT-CE
T ss_pred EcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCc-ee
Confidence 999998 99999999999999997755422123467889999999999999 76 99999999999999999876 44
Q ss_pred eE-EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-------------------------CC
Q 039302 318 MS-FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-------------------------HK 371 (479)
Q Consensus 318 ~~-~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-------------------------h~ 371 (479)
.. +.+|...|++++|+ ++ .+|++|+.|+.|++||+++++ ++..+.. +.
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp EEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCc----Eeeeecchhhhhhhhhhcccccccccccccccce
Confidence 44 56899999999999 77 899999999999999999887 6666652 24
Q ss_pred CCeEEEEEeCCCCCEEEEEe-CCCcEEEEEC--CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeC
Q 039302 372 HPVTSIEWSPHEGSTLAVSS-ADNQLTIWDL--SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p 448 (479)
..|.+++|+|++ .+|++++ .|+.|+||++ ..... ...+....++..|.+++|+|
T Consensus 308 ~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~----------------------l~~~~~~~~~~~v~~~~~~~ 364 (450)
T 2vdu_B 308 FAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGD----------------------LALKQIITFPYNVISLSAHN 364 (450)
T ss_dssp CCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTC----------------------EEEEEEEECSSCEEEEEEET
T ss_pred EEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCc----------------------eeeccEeccCCceEEEEecC
Confidence 579999999965 8888888 8999999999 32210 12233333446799999999
Q ss_pred CCCcEEEEEcC-------CC-ceEEeeec
Q 039302 449 QVPGMIVSTAA-------DG-FNILMPSN 469 (479)
Q Consensus 449 ~~~~ll~s~~~-------dg-i~iw~~~~ 469 (479)
+ .++++++. +. |.+|.+..
T Consensus 365 ~--~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 365 D--EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp T--EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred C--cEEEEEecccCCCCCCcceEEEEEEc
Confidence 5 35555433 22 78887653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=259.07 Aligned_cols=264 Identities=14% Similarity=0.238 Sum_probs=200.9
Q ss_pred EEecCCcceeEEEEecC---CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-----CCCCc
Q 039302 164 RKVAHQGCVNRIRAMSQ---NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-----GHKDE 235 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~---~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~ 235 (479)
...+|.+.|++++|+|. +..++++++.++.|+|||+.. ...+..+. .|...
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~---------------------~~~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS---------------------QGEIRLLQSYVDADADEN 71 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG---------------------GGCEEEEEEEECSCTTCC
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC---------------------CcEEEeeeeccccCCCCc
Confidence 45589999999999984 434555556667999999986 22333333 26678
Q ss_pred eEEEEeCCCCC---CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcC
Q 039302 236 GYAIDWNPVAP---GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 236 v~~l~~s~~~~---~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~ 311 (479)
|++++|+|++. .+|++|+.||.|++||+.++... ..+.+|...|.+++|+| ++. +|++|+.||.|++||++
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI----KHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE----EEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETT
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe----eeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEee
Confidence 99999999932 28999999999999999875442 34678999999999999 565 99999999999999999
Q ss_pred CCCceeeEE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC------------------------CceE
Q 039302 312 VGKSALMSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG------------------------DSVV 364 (479)
Q Consensus 312 ~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~------------------------~~~~ 364 (479)
+++ .+..+ ..|...|.+++|+|++ .+|++|+.||.|++||+++.... ....
T Consensus 147 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 147 TDT-LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTE-EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred cCe-EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 875 55566 6899999999999988 89999999999999999976410 0112
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeee
Q 039302 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKE 443 (479)
Q Consensus 365 ~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~ 443 (479)
.....|...|++++|+ +.+|++++.|+.|++||+........ ..........++....++ ..|++
T Consensus 225 ~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~ 290 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDID-----------KIKPSESNVTILGRFDYSQCDIWY 290 (366)
T ss_dssp EECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGG-----------GCCTTCCCEEEEEEEECSSCCSSC
T ss_pred ccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCcccccc-----------ccccCCcchheeccccccCCcEEE
Confidence 3344599999999999 37999999999999999987643211 000111111233333333 46999
Q ss_pred EEEeCC--CCcEEEEEcCCC-ceEEeeecc
Q 039302 444 LHWHTQ--VPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 444 v~w~p~--~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++|+|+ +. +|++++.+| |++|++...
T Consensus 291 ~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 291 MRFSMDFWQK-MLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CCCEECTTSS-EEEEECTTSCEEEEECCSS
T ss_pred EEEcCCCCCc-EEEEEecCCcEEEEECCCC
Confidence 999999 74 788888887 999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-31 Score=264.55 Aligned_cols=280 Identities=12% Similarity=0.186 Sum_probs=202.1
Q ss_pred eEEEE-ecCCcceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 161 LQLRK-VAHQGCVNRIRAMS-QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 161 ~~~~~-~~H~~~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
+...+ .+|.+.|++++|+| ++ .+||+|+.||+|+|||+....... ...+...+ +|...|++
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~---------------~~~~~~~~-~h~~~v~~ 116 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGE---------------VYSSSLTY-DCSSTVTQ 116 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTC---------------CCSCSEEE-ECSSCEEE
T ss_pred EEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCc---------------ccceeeec-cCCCCEEE
Confidence 33455 78999999999999 77 799999999999999986521100 12334444 48999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecC---CCCcccc------CCCCccc--CCCcEEEEE--ECCCCCcEEEEEeCCCcE
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPA---SDATWNV------DPNPFIG--HAASVEDLQ--WSPTESDVFASCSVDGNI 305 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~---~~~~~~~------~~~~~~~--h~~~V~~l~--~sp~~~~~l~s~s~dg~I 305 (479)
++|+|++. +|++|+.||.|++||+. .+..... ....+.. +...+.++. +++++. +|++|+.||.|
T Consensus 117 ~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i 194 (437)
T 3gre_A 117 ITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRV 194 (437)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEE
T ss_pred EEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeE
Confidence 99999887 99999999999999995 3221110 0001111 556677777 567777 99999999999
Q ss_pred EEEEcCCCCceeeEEec--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKA--HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~ 382 (479)
++||+++.+ ++..+.. |...|++++|+|++ .+|++|+.||.|++||+++.. ++..+. .|..+|++++|+|.
T Consensus 195 ~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 195 IIFDIRTLE-RLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV----LIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp EEEETTTCC-EEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE----EEEEEBCTTCEEEEEEEECTT
T ss_pred EEEeCCCCe-eeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc----EEEEEecCCCCceEEEEeccc
Confidence 999999986 6777776 89999999999998 999999999999999999876 788776 78889999988773
Q ss_pred ---CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccc-----ccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEE
Q 039302 383 ---EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTRE-----QVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMI 454 (479)
Q Consensus 383 ---~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll 454 (479)
++.+|++|+.|+.|++||++....... +...... .......+....+....+...|++++|+ .+ .+|
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l 343 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYA---FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KIL 343 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEE---EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEE
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEE---EEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEE
Confidence 346999999999999999987642100 0000000 0000000000001110122469999999 44 588
Q ss_pred EEEcCCC-ceEEeeecc
Q 039302 455 VSTAADG-FNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dg-i~iw~~~~~ 470 (479)
++++.|+ |++|++.+.
T Consensus 344 ~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 344 LTDEATSSIVMFSLNEL 360 (437)
T ss_dssp EEEGGGTEEEEEETTCG
T ss_pred EecCCCCeEEEEECCCc
Confidence 8888888 999998654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-29 Score=244.92 Aligned_cols=236 Identities=12% Similarity=0.119 Sum_probs=192.6
Q ss_pred EEEecCCcceeEEEEecCCCc-EEEEEeCCceEEEEeC-CCCcccccccccccCCCCCccccCCCcEEecC--CCCceEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPH-ICASWADTGHVQVWDF-RSHLNALAESETVAGHGAPQVLNQSPLVKFGG--HKDEGYA 238 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~-~lat~s~dg~V~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~ 238 (479)
....+|.+.|++++|+|++ . +|++|+.||.|++||+ .. . ....+.+ |...|.+
T Consensus 50 ~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~---------------------~-~~~~~~~~~~~~~v~~ 106 (342)
T 1yfq_A 50 LQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGS---------------------P-SFQALTNNEANLGICR 106 (342)
T ss_dssp EEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSS---------------------S-SEEECBSCCCCSCEEE
T ss_pred eeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccC---------------------C-ceEeccccCCCCceEE
Confidence 4566999999999999998 6 8889999999999999 65 2 3367778 9999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCC---------CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPAS---------DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~---------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
++|+| +. +|++|+.||.|++||+.+ ... ...+. |...|.+++|+|++ +++++.|+.|++||
T Consensus 107 l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d 176 (342)
T 1yfq_A 107 ICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLN----SNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFR 176 (342)
T ss_dssp EEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESC----SSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEE
T ss_pred EEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCe----eeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEE
Confidence 99999 65 999999999999999875 322 22333 88999999999875 89999999999999
Q ss_pred cCC-CCc-eeeEEecCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCC--CCCCceEEEeecCCC---------CeE
Q 039302 310 TRV-GKS-ALMSFKAHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLL--KGGDSVVAHFEYHKH---------PVT 375 (479)
Q Consensus 310 ~~~-~~~-~~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~--~~~~~~~~~~~~h~~---------~I~ 375 (479)
++. ... .......|...|.+++|+| ++ .+|++|+.||.|++||++.. .........+..|.. +|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp SSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred CCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence 998 543 2334467888999999999 88 89999999999999999887 111126788888865 999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC--CCeeeEEEeCCCCcE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ--KDLKELHWHTQVPGM 453 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~--~~V~~v~w~p~~~~l 453 (479)
+++|+|++ .+|++++.||.|++||+.... ++....++ ..|.+++ |++. +
T Consensus 256 ~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-------------------------~~~~~~~~h~~~v~~~~--~~~~-~ 306 (342)
T 1yfq_A 256 SIEFSPRH-KFLYTAGSDGIISCWNLQTRK-------------------------KIKNFAKFNEDSVVKIA--CSDN-I 306 (342)
T ss_dssp EEEECTTT-CCEEEEETTSCEEEEETTTTE-------------------------EEEECCCCSSSEEEEEE--ECSS-E
T ss_pred EEEEcCCC-CEEEEecCCceEEEEcCccHh-------------------------HhhhhhcccCCCceEec--CCCC-e
Confidence 99999965 899999999999999998763 23333333 4699999 8875 7
Q ss_pred EEEEcCCC
Q 039302 454 IVSTAADG 461 (479)
Q Consensus 454 l~s~~~dg 461 (479)
|++++.||
T Consensus 307 l~s~s~Dg 314 (342)
T 1yfq_A 307 LCLATSDD 314 (342)
T ss_dssp EEEEEECT
T ss_pred EEEEecCC
Confidence 77777776
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.1e-30 Score=256.10 Aligned_cols=248 Identities=21% Similarity=0.315 Sum_probs=199.9
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|+++.| ++ .+|++|+.||.|++||+.. .+.+..+.+|...|.+++|
T Consensus 166 ~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~l~~ 221 (435)
T 1p22_A 166 KRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNT---------------------GEMLNTLIHHCEAVLHLRF 221 (435)
T ss_dssp EEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSS---------------------CCEEEEECCCCSCEEEEEC
T ss_pred EEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcCCCCcEEEEEE
Confidence 3467799999999999 44 7899999999999999987 6778889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++ +.|++|+.||.|++||+.+..... ....+.+|...|.+++| ++. +|++|+.||.|++||+++++ ++..+.
T Consensus 222 ~~---~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~ 293 (435)
T 1p22_A 222 NN---GMMVTCSKDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTCE-FVRTLN 293 (435)
T ss_dssp CT---TEEEEEETTSCEEEEECSSSSCCE-EEEEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTCC-EEEEEE
T ss_pred cC---CEEEEeeCCCcEEEEeCCCCCCce-eeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcCc-EEEEEc
Confidence 74 399999999999999998754421 11346789999999999 455 99999999999999999985 778889
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|...|.+++|+ + .+|++|+.||.|++||++++. ++..+.+|...|++++|+ +.+|++|+.||.|++||+
T Consensus 294 ~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~---~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 294 GHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEEH
T ss_pred CCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC----EEEEEeCCcCcEEEEEec---CCEEEEEeCCCcEEEEEC
Confidence 999999999996 3 799999999999999999987 899999999999999993 489999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
....... . ......+....+| ..|.+++|+ + ..|++++.|| |++|++.+-
T Consensus 364 ~~~~~~~---------------~-~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 364 VAALDPR---------------A-PAGTLCLRTLVEHSGRVFRLQFD--E-FQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp HHHTSTT---------------S-CTTTTEEEEECCCSSCCCCEEEC--S-SCEEECCSSSEEEEEC----
T ss_pred CCCCCcc---------------c-cccchheeeccCCCCCeEEEEeC--C-CEEEEEeCCCEEEEEECCCC
Confidence 7553110 0 0000122222333 479999993 3 4688888888 999998765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-29 Score=242.45 Aligned_cols=247 Identities=20% Similarity=0.189 Sum_probs=202.7
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+...+.+|.+.|++++| |++ .+|++|+.||.|+|||+.. ......+..|...|.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~---------------------~~~~~~~~~~~~~v~ 63 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDD---------------------QWLGTVVYTGQGFLN 63 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESS---------------------SEEEEEEEECSSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCC---------------------CEEEEEeecCCccEE
Confidence 33555678999999999999 877 6788999999999999976 456677888999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|+|++. +|++|+.||.|++|++....... ....+.+|...|.+++|+ +. +|++++.||.|++|| .. ...
T Consensus 64 ~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~-~~~ 135 (313)
T 3odt_A 64 SVCYDSEKE-LLLFGGKDTMINGVPLFATSGED-PLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EG-SLV 135 (313)
T ss_dssp EEEEETTTT-EEEEEETTSCEEEEETTCCTTSC-C-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TT-EEE
T ss_pred EEEECCCCC-EEEEecCCCeEEEEEeeecCCCC-cccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CC-cEE
Confidence 999999998 99999999999999997653321 235577899999999993 44 899999999999999 22 367
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
..+..|...+.+++|.|..+.+|++++.||.|++||.. . .+..+.. |...|++++|+|++ . |++++.|+.|
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~----~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i 207 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--K----VIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLI 207 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--E----EEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEE
T ss_pred EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--c----eEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeE
Confidence 77889999999999998444899999999999999933 2 6677777 99999999999965 4 9999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++||++... .+....+ ...|++++|+|++ . +++++.|+ |++|++.+.
T Consensus 208 ~i~d~~~~~-------------------------~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 208 KLVDMHTGD-------------------------VLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEEETTTCC-------------------------EEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTC
T ss_pred EEEECCchh-------------------------hhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCC
Confidence 999998763 2222222 3579999999998 3 66666676 999987554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=242.56 Aligned_cols=266 Identities=18% Similarity=0.233 Sum_probs=206.9
Q ss_pred CceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 039302 71 WPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDD 150 (479)
Q Consensus 71 wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (479)
-+..++.|-|+. .+|++|+ .++.|.||++..-
T Consensus 12 ~~v~~~~~~~~~-----------~~l~~~~-----~dg~i~iw~~~~~-------------------------------- 43 (351)
T 3f3f_A 12 DLVHDVVYDFYG-----------RHVATCS-----SDQHIKVFKLDKD-------------------------------- 43 (351)
T ss_dssp SCEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECSS--------------------------------
T ss_pred cceeEEEEcCCC-----------CEEEEee-----CCCeEEEEECCCC--------------------------------
Confidence 355677887763 2577763 6789999998310
Q ss_pred ccCCCCCCceeEEEEecCCcceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE
Q 039302 151 EEEGGSGTPILQLRKVAHQGCVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK 228 (479)
Q Consensus 151 ~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479)
.....+...+.+|.+.|++++|+|. + .+|++|+.||.|+|||+........ ....+++..
T Consensus 44 -----~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~------------~~~~~~~~~ 105 (351)
T 3f3f_A 44 -----TSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECS------------GRRWNKLCT 105 (351)
T ss_dssp -----SCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTS------------SCSEEEEEE
T ss_pred -----CCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCccccc------------ccCcceeee
Confidence 0123445567899999999999994 5 7999999999999999986311100 001245778
Q ss_pred ecCCCCceEEEEeCCC--CCCeEEEEeCCCeEEEEecCCCCcccc---------CCCCcccCCCcEEEEEECCC---CCc
Q 039302 229 FGGHKDEGYAIDWNPV--APGRLVSGDCNSCIHLWEPASDATWNV---------DPNPFIGHAASVEDLQWSPT---ESD 294 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~---------~~~~~~~h~~~V~~l~~sp~---~~~ 294 (479)
+.+|...|.+++|+|+ +. +|++|+.||.|++||+.+...... .......|...+.+++|+|+ +.
T Consensus 106 ~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 183 (351)
T 3f3f_A 106 LNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE- 183 (351)
T ss_dssp ECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-
T ss_pred ecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc-
Confidence 8899999999999999 76 999999999999999987543210 01112368889999999997 55
Q ss_pred EEEEEeCCCcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCCC-----------
Q 039302 295 VFASCSVDGNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLAS---CLLASGSDDGTFSIHDLRLLKG----------- 359 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~---~~l~sgs~dg~i~iwDlr~~~~----------- 359 (479)
+|++++.++.+.+|+...... .+..+.+|...|++++|+|+++ .+|++|+.||.|++||++....
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 263 (351)
T 3f3f_A 184 KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263 (351)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------
T ss_pred EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence 999999999998888877642 3566788999999999999874 6999999999999999987421
Q ss_pred -------------------------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 360 -------------------------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 360 -------------------------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
...++..+.+|...|++++|+|++ .+|++++.||.|+||++....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred eccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence 013677788999999999999965 899999999999999998764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=255.56 Aligned_cols=243 Identities=22% Similarity=0.330 Sum_probs=202.4
Q ss_pred eEEEEecCCcce-eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 161 LQLRKVAHQGCV-NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V-~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
....+.+|.+.| .++.+. + .+|++|+.||+|++||+.. .+.+..+.+|...|+++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~---------------------~~~~~~~~~h~~~V~~l 168 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSIN---------------------KKFLLQLSGHDGGVWAL 168 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCC---------------------CcEEEEEeCCCcCEEEE
Confidence 335788999885 666654 4 6899999999999999987 67788899999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCce-
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSA- 316 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~- 316 (479)
+|++++ +|++|+.||+|++||+.++.. ...+.+|...|.+++|++ ++. +|++|+.||+|++||+++....
T Consensus 169 ~~~~~~--~l~s~s~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 169 KYAHGG--ILVSGSTDRTVRVWDIKKGCC----THVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EECSTT--EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC-
T ss_pred EEcCCC--EEEEEeCCCCEEEEECCCCcE----EEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccc
Confidence 999876 899999999999999987543 245778999999999985 555 9999999999999999976421
Q ss_pred ---------------------eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE
Q 039302 317 ---------------------LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375 (479)
Q Consensus 317 ---------------------~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~ 375 (479)
+..+.+|...|.++.. ++ .+|++|+.||.|++||+++.. ++..+.+|...|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~ 314 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--HG-NIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIY 314 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--ET-TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEcC--CC-CEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCEE
Confidence 4456788888888754 45 899999999999999999887 8899999999999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMI 454 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll 454 (479)
+++|+|++ .+|++|+.|+.|++||+.... .+....+| ..|.+++|++ .++
T Consensus 315 ~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~-------------------------~~~~~~~h~~~v~~~~~~~---~~l 365 (464)
T 3v7d_B 315 STIYDHER-KRCISASMDTTIRIWDLENGE-------------------------LMYTLQGHTALVGLLRLSD---KFL 365 (464)
T ss_dssp EEEEETTT-TEEEEEETTSCEEEEETTTTE-------------------------EEEEECCCSSCEEEEEECS---SEE
T ss_pred EEEEcCCC-CEEEEEeCCCcEEEEECCCCc-------------------------EEEEEeCCCCcEEEEEEcC---CEE
Confidence 99999955 899999999999999998763 23333333 4799999984 478
Q ss_pred EEEcCCC-ceEEeeecc
Q 039302 455 VSTAADG-FNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dg-i~iw~~~~~ 470 (479)
++++.|| |++|++.+.
T Consensus 366 ~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEETTSEEEEEETTTC
T ss_pred EEEeCCCcEEEEECCCC
Confidence 8888888 999998654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=253.04 Aligned_cols=205 Identities=12% Similarity=0.148 Sum_probs=168.3
Q ss_pred cCCcceeEEEEecCCCcE-EEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHI-CASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+...+.+++|+|+|..+ +|+++.|++|+|||+.. .+++..+. |..+|++|+|+|++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~V~~v~fspdg 188 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD---------------------LTEKFEIE-TRGEVKDLHFSTDG 188 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT---------------------TEEEEEEE-CSSCCCEEEECTTS
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC---------------------CcEEEEeC-CCCceEEEEEccCC
Confidence 344568899999999544 34556799999999987 55666664 77789999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCc---eee
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG----NIAIWDTRVGKS---ALM 318 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg----~I~iwD~~~~~~---~~~ 318 (479)
. +|++++.+ .+++|+..++.... .....+|...|.+++|+|++. ++++++.|+ .+++|++..... ...
T Consensus 189 ~-~l~s~s~~-~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~ 263 (365)
T 4h5i_A 189 K-VVAYITGS-SLEVISTVTGSCIA--RKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSK 263 (365)
T ss_dssp S-EEEEECSS-CEEEEETTTCCEEE--EECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEE
T ss_pred c-eEEeccce-eEEEEEeccCccee--eeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeee
Confidence 8 99998855 56666665544322 134567889999999999998 889988887 688999887643 234
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+..|...|++++|+|++ .+||+|+.|++|+|||+++++ ++..+ .+|..+|++|+|+|++ .+|||||.|++|+
T Consensus 264 ~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~----~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvr 337 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS----MSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIH 337 (365)
T ss_dssp EEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE----EEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEE
T ss_pred eecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc----EEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEE
Confidence 567899999999999999 999999999999999999987 77775 7899999999999965 9999999999999
Q ss_pred EEECCCC
Q 039302 398 IWDLSLE 404 (479)
Q Consensus 398 iwdl~~~ 404 (479)
||++...
T Consensus 338 vw~ip~~ 344 (365)
T 4h5i_A 338 IIKLPLN 344 (365)
T ss_dssp EEECCTT
T ss_pred EEEcCCC
Confidence 9999754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=246.98 Aligned_cols=254 Identities=22% Similarity=0.285 Sum_probs=202.5
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+. .+|++|+ .++.|.||++..
T Consensus 11 ~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~iw~~~~-------------------------------- 42 (379)
T 3jrp_A 11 NELIHDAVLDYYG-----------KRLATCS-----SDKTIKIFEVEG-------------------------------- 42 (379)
T ss_dssp CCCEEEEEECSSS-----------SEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred cccEEEEEEcCCC-----------CEEEEEE-----CCCcEEEEecCC--------------------------------
Confidence 3455677777763 2577763 578899999841
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (479)
........+.+|.+.|++++|+++ + .+|++|+.||.|+|||+... ....+.
T Consensus 43 -------~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~-------------------~~~~~~ 95 (379)
T 3jrp_A 43 -------ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIA 95 (379)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETT-------------------EEEEEE
T ss_pred -------CcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCC-------------------ceeEee
Confidence 022344567799999999999977 5 79999999999999999872 112667
Q ss_pred EecCCCCceEEEEeCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-------------C
Q 039302 228 KFGGHKDEGYAIDWNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-------------E 292 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-------------~ 292 (479)
.+.+|...|.+++|+|+ +. +|++|+.||.|++||+....... ...+.+|...|.+++|+|. +
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 96 VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC----------CTT
T ss_pred eecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 78889999999999999 76 99999999999999998754322 1346689999999999994 6
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCCc-eEEE
Q 039302 293 SDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGDS-VVAH 366 (479)
Q Consensus 293 ~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~~-~~~~ 366 (479)
. +|++|+.||.|++||++.... ....+..|...|++++|+|++ +.+|++|+.||.|++||++....... .+..
T Consensus 173 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 251 (379)
T 3jrp_A 173 R-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 251 (379)
T ss_dssp C-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred C-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec
Confidence 6 999999999999999987642 345667899999999999993 39999999999999999998652100 1122
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 367 ~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...|...|++++|+|++ .+|++++.||.|++|++..
T Consensus 252 ~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 252 EEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred cccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence 23488999999999965 8999999999999999984
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=287.18 Aligned_cols=252 Identities=16% Similarity=0.254 Sum_probs=211.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .++|+|+.||+|+|||+.+ .+.+.++.+|...|.+++|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~---------------------~~~~~~~~~h~~~v~~~~~ 665 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAET---------------------GEKLLDIKAHEDEVLCCAF 665 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEE
T ss_pred eEEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEeccCCCCEEEEEE
Confidence 35678999999999999999 7889999999999999987 6778889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+|++. +|++|+.||.|++||+.++.. ...+.+|...|.+++|+|++ ..++++|+.||.|++||++++. ++..+
T Consensus 666 s~~~~-~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~ 739 (1249)
T 3sfz_A 666 SSDDS-YIATCSADKKVKIWDSATGKL----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTM 739 (1249)
T ss_dssp CTTSS-EEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEE
T ss_pred ecCCC-EEEEEeCCCeEEEEECCCCce----EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhhee
Confidence 99998 999999999999999988654 24577899999999999953 2389999999999999999986 77788
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------------------
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------------- 360 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------------- 360 (479)
.+|...|++++|+|++ .+|++|+.||.|++||+++....
T Consensus 740 ~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 740 FGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp CCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred cCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 9999999999999998 89999999999999998765310
Q ss_pred ----------CceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC
Q 039302 361 ----------DSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP 429 (479)
Q Consensus 361 ----------~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 429 (479)
...+..+ .+|...|++++|+|++ .++++++.|+.|++||+....
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~------------------------ 873 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL------------------------ 873 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE------------------------
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc------------------------
Confidence 0011112 2688899999999955 999999999999999998763
Q ss_pred ceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 430 QLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 430 ~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+....+| ..|++++|+|++. .+++++.|+ +++|++.+
T Consensus 874 -~~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 874 -KVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp -EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEHHH
T ss_pred -eeeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEEEccc
Confidence 23333333 4699999999986 667777777 99999764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=246.56 Aligned_cols=253 Identities=13% Similarity=0.111 Sum_probs=199.0
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+|.+.|++++|+|++ .+|++++.||.|+||++..... ..+...+.+|...|.+++|+|++
T Consensus 8 ~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLCCNFIDNT 68 (342)
T ss_dssp SCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEEEEEEESS
T ss_pred cCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCc------------------cccceeeeecCCceEEEEECCCC
Confidence 4899999999999998 6888999999999999986210 11245556899999999999986
Q ss_pred CC-eEEEEeCCCeEEEEec-CCCCccccCCCCccc--CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC---------
Q 039302 246 PG-RLVSGDCNSCIHLWEP-ASDATWNVDPNPFIG--HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--------- 312 (479)
Q Consensus 246 ~~-~l~sg~~dg~I~lwd~-~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~--------- 312 (479)
. +|++|+.||.|++|++ .++.. ..+.+ |...|.+++|+| +. +|++++.||.|++||+++
T Consensus 69 -~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 69 -DLQIYVGTVQGEILKVDLIGSPSF-----QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp -SEEEEEEETTSCEEEECSSSSSSE-----EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred -CcEEEEEcCCCeEEEEEeccCCce-----EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccccc
Confidence 4 7999999999999999 76543 34667 999999999999 66 999999999999999987
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCCceEEEeecCCCCeEEEEEeC-CCCCEEEEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGDSVVAHFEYHKHPVTSIEWSP-HEGSTLAVS 390 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~h~~~I~~v~~sp-~~~~~las~ 390 (479)
.+ ++..+. |...|.+++|+|++ |++++.|+.|++||++. ... ........|...|++++|+| ++ .+|+++
T Consensus 141 ~~-~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~ 212 (342)
T 1yfq_A 141 NL-NSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQ-EGYACS 212 (342)
T ss_dssp ES-CSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGG-CEEEEE
T ss_pred CC-eeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCC-CEEEEE
Confidence 53 444444 88999999999855 99999999999999998 542 13345556889999999999 76 899999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-------CCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-------QKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-------~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
+.||.|++|++...... ....+...+..|.. ...|.+++|+|++. +|++++.+| |
T Consensus 213 ~~dg~i~i~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i 275 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDD----------------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGII 275 (342)
T ss_dssp ETTSEEEEEECCTTCCS----------------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCE
T ss_pred ecCCcEEEEEEcCCCcc----------------cccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceE
Confidence 99999999999875100 00011233333432 12799999999986 566666676 9
Q ss_pred eEEeeecc
Q 039302 463 NILMPSNI 470 (479)
Q Consensus 463 ~iw~~~~~ 470 (479)
++|++.+.
T Consensus 276 ~vwd~~~~ 283 (342)
T 1yfq_A 276 SCWNLQTR 283 (342)
T ss_dssp EEEETTTT
T ss_pred EEEcCccH
Confidence 99998654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=247.96 Aligned_cols=239 Identities=19% Similarity=0.321 Sum_probs=200.8
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|+++.|++ .++++|+.||+|++||+.. .+.+..+.+|...|.+++|
T Consensus 152 ~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 152 LRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET---------------------GECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp EEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEE
T ss_pred EEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCc---------------------CcEEEEECCCCCcEEEEEe
Confidence 346779999999999983 5899999999999999987 5677889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++ . .|++|+.||.|++||+.++... ..+.+|...|.+++| ++. .+++|+.||.|++||++++. ++..+.
T Consensus 208 ~~--~-~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~ 276 (445)
T 2ovr_B 208 HE--K-RVVSGSRDATLRVWDIETGQCL----HVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETET-CLHTLQ 276 (445)
T ss_dssp ET--T-EEEEEETTSEEEEEESSSCCEE----EEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTE-EEEEEC
T ss_pred cC--C-EEEEEeCCCEEEEEECCCCcEE----EEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCc-EeEEec
Confidence 63 3 8999999999999999876542 346789999999999 455 89999999999999999875 777888
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|...|.+++| ++ .+|++|+.||.|++||+++++ ++..+.+|...+.++.+++ .+|++|+.||.|++||+
T Consensus 277 ~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 277 GHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN----CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDI 346 (445)
T ss_dssp CCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC----EEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEET
T ss_pred CCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC----EEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEEC
Confidence 99999999999 44 799999999999999999987 8899999999999999864 79999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+..... ..+..+. +...|.+++|++ .++++++.|| |++|++.+.
T Consensus 347 ~~~~~~----------------------~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 347 KTGQCL----------------------QTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp TTCCEE----------------------EEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC
T ss_pred CCCcEE----------------------EEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCC
Confidence 876310 1122211 234799999975 4788888888 999997653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=280.65 Aligned_cols=208 Identities=21% Similarity=0.376 Sum_probs=181.7
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+||+|+.||.|+|||+.+ .+.+..+.+|...|.+++|
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~---------------------~~~~~~~~~~~~~v~~~~~ 707 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSAT---------------------GKLVHTYDEHSEQVNCCHF 707 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEEE
T ss_pred EEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCC---------------------CceEEEEcCCCCcEEEEEE
Confidence 34677999999999999999 7889999999999999987 6788899999999999999
Q ss_pred CCCCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce----
Q 039302 242 NPVAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA---- 316 (479)
Q Consensus 242 s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~---- 316 (479)
+|++.. ++++|+.||.|++||+.++... ..+.+|...|++++|+|++. +|++|+.||+|++||++++...
T Consensus 708 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~----~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 708 TNKSNHLLLATGSNDFFLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSIN 782 (1249)
T ss_dssp CSSSSCCEEEEEETTSCEEEEETTSSSEE----EEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred ecCCCceEEEEEeCCCeEEEEECCCcchh----heecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceec
Confidence 995432 8999999999999999876542 34678999999999999998 9999999999999998765210
Q ss_pred -------------------------------------------------eeE-EecCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 317 -------------------------------------------------LMS-FKAHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 317 -------------------------------------------------~~~-~~~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
... ..+|...|.+++|+|++ .++++|+.|
T Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d 861 (1249)
T 3sfz_A 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQ 861 (1249)
T ss_dssp CCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSS
T ss_pred ccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCC
Confidence 001 12678889999999999 899999999
Q ss_pred CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 347 GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 347 g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|.|++||+.+.. .+..+.+|...|++++|+|++ .+|++++.|+.|++|++.
T Consensus 862 g~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 862 YCVELWNIDSRL----KVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SCEEEEETTTTE----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHH
T ss_pred CeEEEEEcCCCc----eeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEcc
Confidence 999999999877 789999999999999999955 899999999999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=258.86 Aligned_cols=253 Identities=14% Similarity=0.192 Sum_probs=206.7
Q ss_pred eEEEEecCCcc-eeEEEEec--CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 161 LQLRKVAHQGC-VNRIRAMS--QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 161 ~~~~~~~H~~~-V~~v~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
....+.+|.+. |++++|+| ++ .+||+|+.||.|+|||+........ .....+..+..|...|.
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~ 120 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNS-------------VEVNVKSEFQVLAGPIS 120 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTE-------------EEEEEEEEEECCSSCEE
T ss_pred cceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCccccc-------------ccccccchhhcccccEE
Confidence 44578899999 99999999 88 7899999999999999964100000 01345667888999999
Q ss_pred EEEeCCCCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 238 AIDWNPVAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
+++|+|++. +|++++.+ +.|++||.. .. ...+.+|...|.+++|+|+++.+|++++.||.|++||+++.
T Consensus 121 ~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~~--~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 121 DISWDFEGR-RLCVVGEGRDNFGVFISWDSG--NS----LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 193 (615)
T ss_dssp EEEECTTSS-EEEEEECCSSCSEEEEETTTC--CE----EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred EEEEeCCCC-EEEEeccCCCCccEEEEEECC--Cc----ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence 999999998 99999987 799999942 22 24467899999999999999878999999999999999887
Q ss_pred CceeeEEecCCC---CEEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-e---cCCCCeEEEEEeCCCCC
Q 039302 314 KSALMSFKAHNA---DVNVISWNRL-ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-E---YHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 314 ~~~~~~~~~h~~---~v~~l~~~p~-~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~---~h~~~I~~v~~sp~~~~ 385 (479)
+ .+..+..|.. .|++++|+|+ + .+|++|+.||.|++||+++.+ .+..+ . .|..+|++++|+ ++.
T Consensus 194 ~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~--~~~ 265 (615)
T 1pgu_A 194 K-FSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL--DSQ 265 (615)
T ss_dssp E-EEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES--SSS
T ss_pred c-eeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc--CCC
Confidence 5 6778888998 9999999999 7 899999999999999999887 78888 6 899999999999 459
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-----CCeeeEEEeCCCCcEEEEEcCC
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-----KDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-----~~V~~v~w~p~~~~ll~s~~~d 460 (479)
+|++++.|+.|++||+.... .+.....+ ..+..+.|. ++. .+++++.+
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~ 318 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSK-------------------------CVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLD 318 (615)
T ss_dssp EEEEEETTSEEEEEETTTTE-------------------------EEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETT
T ss_pred EEEEEcCCCcEEEEECCCCc-------------------------EEEEEcCCCCcccCceeEEEeC-CCC-eEEEEECC
Confidence 99999999999999998763 22222222 358888886 554 66666666
Q ss_pred C-ceEEeeec
Q 039302 461 G-FNILMPSN 469 (479)
Q Consensus 461 g-i~iw~~~~ 469 (479)
+ +.+|++.+
T Consensus 319 g~i~~~d~~~ 328 (615)
T 1pgu_A 319 GTLNFYELGH 328 (615)
T ss_dssp SCEEEEETTE
T ss_pred CCEEEEECCC
Confidence 6 99998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=246.15 Aligned_cols=241 Identities=20% Similarity=0.321 Sum_probs=200.3
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+.+|.+.|+++.+.+ ..+++|+.||.|++||+.. .+.+..+.+|...|.++
T Consensus 190 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~---------------------~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET---------------------GQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSS---------------------CCEEEEEECCSSCEEEE
T ss_pred cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCC---------------------CcEEEEEcCCcccEEEE
Confidence 34456778999999999964 5788999999999999987 67788899999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+| ++. +|++|+.||.|++||+.++.. ...+.+|...|.+++| ++. .+++|+.||.|++||+++++ ++..
T Consensus 246 ~~--~~~-~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~-~~~~ 314 (445)
T 2ovr_B 246 QY--DGR-RVVSGAYDFMVKVWDPETETC----LHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGN-CIHT 314 (445)
T ss_dssp EE--CSS-CEEEEETTSCEEEEEGGGTEE----EEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCC-EEEE
T ss_pred EE--CCC-EEEEEcCCCEEEEEECCCCcE----eEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCC-EEEE
Confidence 99 455 999999999999999977543 2446789999999999 455 89999999999999999986 7788
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+..|...+.++.+++ .+|++|+.||.|++||++++. ++..+.. |..+|++++|++ .+|++|+.||.|
T Consensus 315 ~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v 384 (445)
T 2ovr_B 315 LTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTV 384 (445)
T ss_dssp ECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCC----EEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEE
T ss_pred EcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCCc----EEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeE
Confidence 889999999999863 689999999999999999887 7888876 889999999964 799999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe---ecCCCCeeeEEEeCCCCcEEEEEcCCC-----ceEEeee
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI---HQGQKDLKELHWHTQVPGMIVSTAADG-----FNILMPS 468 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---h~g~~~V~~v~w~p~~~~ll~s~~~dg-----i~iw~~~ 468 (479)
++||+..+... ..+.. ......|.+++|+|++. ++++++.|| +.||++.
T Consensus 385 ~iwd~~~~~~~----------------------~~~~~~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 385 KLWDLKTGEFI----------------------RNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEETTTCCEE----------------------EEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECC
T ss_pred EEEECCCCcee----------------------eeeeccccCCCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEECC
Confidence 99999877411 11111 12224699999999984 778888877 7777764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=246.42 Aligned_cols=242 Identities=21% Similarity=0.360 Sum_probs=202.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE--ecCCCCceEEEEeCCCCCCe
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK--FGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~~~~~ 248 (479)
.++.|.|++++ +||+|. |++|+|||..+ ++.+.. +.+|...|++|+|+|++. +
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~t---------------------g~~~~~~~~~~~~~~V~sv~fspdg~-~ 161 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASS---------------------GDILQLLQMEQPGEYISSVAWIKEGN-Y 161 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTT---------------------CCEEEEEECCSTTCCEEEEEECTTSS-E
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCC---------------------CCEEEEEEecCCCCcEEEEEECCCCC-E
Confidence 47889999854 888865 89999999987 444444 456788999999999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
|++|+.||.|+|||+.++.. ...+.+|...|.+++|++ . +|++|+.|+.+++||.+.....+..+.+|...+.
T Consensus 162 lasgs~Dg~v~iWd~~~~~~----~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKR----LRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEEECCCeEEEEEcCCCcE----EEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 99999999999999987644 245778999999999864 4 8999999999999999988767788899999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE--eCCCcEEEEECCCCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS--SADNQLTIWDLSLEKD 406 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~--s~Dg~I~iwdl~~~~~ 406 (479)
.+.|+|++ .+|++++.|+.|++||.+........+..+..|...|.+++|+|.+..+++++ +.|++|+|||+....
T Consensus 235 ~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~- 312 (420)
T 4gga_A 235 GLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA- 312 (420)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-
T ss_pred eeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-
Confidence 99999999 89999999999999999987754556778889999999999999888888775 479999999998873
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCC-ceEEeeecc
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADG-FNILMPSNI 470 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dg-i~iw~~~~~ 470 (479)
.+.....+..|.++.|+|++..++++++ .|+ |+||++.+.
T Consensus 313 ------------------------~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 313 ------------------------CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp ------------------------EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred ------------------------cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 3334444568999999999987766554 455 999998654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=275.48 Aligned_cols=206 Identities=13% Similarity=0.115 Sum_probs=174.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|.+.|++++|+|++ .+||+|+.||+|+||+... .+....+ .|...|.+|+|+
T Consensus 11 ~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~---------------------~~~~~~~-~~~~~V~~l~fs 67 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQ---------------------VEVVIKL-EDRSAIKEMRFV 67 (902)
T ss_dssp EEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTT---------------------CEEEEEC-SSCCCEEEEEEE
T ss_pred ccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCC---------------------cEEEEEc-CCCCCEEEEEEc
Confidence 4567999999999999999 7999999999999999865 3333333 478899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-----
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL----- 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~----- 317 (479)
| +. +|++++.|++|+|||+.++... ..+ .|...|++++|+|++. +|++|+.||+|++||+++.....
T Consensus 68 p-g~-~L~S~s~D~~v~lWd~~~~~~~----~~~-~~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 68 K-GI-YLVVINAKDTVYVLSLYSQKVL----TTV-FVPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp T-TT-EEEEEETTCEEEEEETTTCSEE----EEE-ECSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred C-CC-EEEEEECcCeEEEEECCCCcEE----EEE-cCCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceecc
Confidence 9 76 8999999999999999875442 223 3668999999999998 99999999999999999874211
Q ss_pred -----eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------------------CCCe
Q 039302 318 -----MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------------------KHPV 374 (479)
Q Consensus 318 -----~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------------------~~~I 374 (479)
..+.+|...|++++|+|++..+|++|+.||.| +||+++.. ++..+..| ...|
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE----IKQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE----EEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc----eEEEEecccCCcCCCcccccccccccCCCe
Confidence 22356889999999999765799999999999 99999877 67777765 5789
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
++++|+|++ .+|++|+.|+.|++||++.++
T Consensus 215 ~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 215 IQSLYHPNS-LHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECTTS-SEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence 999999964 999999999999999998763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-29 Score=259.26 Aligned_cols=250 Identities=18% Similarity=0.237 Sum_probs=205.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-eEEEEeCC-
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-GYAIDWNP- 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~- 243 (479)
..|.+.|++++|+|++ .+||+++ ++.|+||++..... .......+.+|... |++++|+|
T Consensus 15 ~~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~-----------------~~~~~~~~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDS-----------------KVPPVVQFTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CCCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCC-----------------SSCSEEEECTTTTSCEEEEEECSS
T ss_pred CCccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCC-----------------ccccceEEecCCCceEEEEEECcC
Confidence 3688999999999999 6777766 78999999986100 01678889999999 99999999
Q ss_pred -CCCCeEEEEeCCCeEEEEecCCCCc----cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCC
Q 039302 244 -VAPGRLVSGDCNSCIHLWEPASDAT----WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----GNIAIWDTRVGK 314 (479)
Q Consensus 244 -~~~~~l~sg~~dg~I~lwd~~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~I~iwD~~~~~ 314 (479)
++. +|++|+.||.|++|++.++.. .......+..|...|.+++|+|++. +|++++.+ +.|++||. .
T Consensus 76 ~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~--~- 150 (615)
T 1pgu_A 76 KGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDS--G- 150 (615)
T ss_dssp TTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTT--C-
T ss_pred CCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC-EEEEeccCCCCccEEEEEEC--C-
Confidence 988 999999999999999964310 0011245677899999999999998 88888887 68999983 3
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC---CeEEEEEeCCCCCEEEEEe
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH---PVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~---~I~~v~~sp~~~~~las~s 391 (479)
..+..+..|...|++++|+|++..+|++|+.||.|++||++..+ .+..+.+|.. .|++++|+|+++.+|++++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc----eeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 26777889999999999999995599999999999999999887 7889999999 9999999997359999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-----cCCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-----QGQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-----~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
.|+.|++||+.... .+... .+...|.+++|+ ++ .+|++++.++ |++|
T Consensus 227 ~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 227 SDRKISCFDGKSGE-------------------------FLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVW 279 (615)
T ss_dssp TTCCEEEEETTTCC-------------------------EEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEE
T ss_pred CCCeEEEEECCCCC-------------------------EeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEE
Confidence 99999999998763 22222 233579999999 66 4777788777 9999
Q ss_pred eeecc
Q 039302 466 MPSNI 470 (479)
Q Consensus 466 ~~~~~ 470 (479)
++.+.
T Consensus 280 d~~~~ 284 (615)
T 1pgu_A 280 DVTTS 284 (615)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-28 Score=241.50 Aligned_cols=235 Identities=20% Similarity=0.368 Sum_probs=196.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|...|+++.+ ++ .++++|+.||.|++||+.+ .+.+..+.+|...|.+++|
T Consensus 128 ~~~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~---------------------~~~~~~~~~h~~~v~~l~~-- 181 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNT---------------------LECKRILTGHTGSVLCLQY-- 181 (435)
T ss_dssp CCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSS---------------------CCEEEEECCCSSCEEEEEC--
T ss_pred cccCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCC---------------------CeEEEEEcCCCCcEEEEEE--
Confidence 34467788999887 45 7899999999999999987 6778889999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce--eeEEe
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA--LMSFK 321 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~--~~~~~ 321 (479)
++. +|++|+.||.|++||+.++... ..+.+|...|.+++|++ . .+++|+.||.|++||+++.... ...+.
T Consensus 182 ~~~-~l~sg~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 182 DER-VIITGSSDSTVRVWDVNTGEML----NTLIHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp CSS-EEEEEETTSCEEEEESSSCCEE----EEECCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred CCC-EEEEEcCCCeEEEEECCCCcEE----EEEcCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 455 9999999999999999886542 44678999999999974 3 8999999999999999987532 25668
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|++++|+ + .+|++|+.||.|++||+++.. ++..+.+|...|.++.|++ .+|++|+.||.|++||+
T Consensus 254 ~~~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 254 GHRAAVNVVDFD--D-KYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp CCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCcCc----EEEEEcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEEC
Confidence 899999999993 4 799999999999999999987 8999999999999999963 79999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+... .+....+| ..|.+++|+ + .+|++++.|| |++|++...
T Consensus 324 ~~~~-------------------------~~~~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 324 ECGA-------------------------CLRVLEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp TTCC-------------------------EEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHHH
T ss_pred CCCC-------------------------EEEEEeCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCCC
Confidence 8763 22222333 479999993 3 4788888888 999998654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=237.91 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=160.1
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCC--CC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNP--VA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~--~~ 245 (479)
.+.|+++.++|. +++++.|++|++|+........... ....+..+. +|...|.+++|+| ++
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK------------TNKVLREIEVDSANEIIYMYGHNEVNT 139 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT------------TCCEEEEEECCCSSCEEEEECCC---C
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC------------CcceeEEeecCCCCCEEEEEcCCCCCC
Confidence 567888899886 8899999999999987532111000 123233333 6778999999999 88
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec-CC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-HN 324 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~-h~ 324 (479)
. +|++|+.||.|++||+.++..... ....|...|++++|+|++. +|++|+.||.|+|||++++......+.. |.
T Consensus 140 ~-~l~s~s~dg~i~~wd~~~~~~~~~---~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~ 214 (343)
T 3lrv_A 140 E-YFIWADNRGTIGFQSYEDDSQYIV---HSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEE 214 (343)
T ss_dssp C-EEEEEETTCCEEEEESSSSCEEEE---ECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTT
T ss_pred C-EEEEEeCCCcEEEEECCCCcEEEE---EecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCC
Confidence 7 999999999999999987654221 1234566799999999998 9999999999999999998643367777 99
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE--EEEEeCCCCCEEEEEeC-CCcEEEEEC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT--SIEWSPHEGSTLAVSSA-DNQLTIWDL 401 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~--~v~~sp~~~~~las~s~-Dg~I~iwdl 401 (479)
..|++++|+|++ .+|++|++ +.|++||+++.... ..+..+..|...+. +++|+|++ .+|++++. |+.|+||++
T Consensus 215 ~~v~~l~fs~~g-~~l~s~~~-~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 215 AKIKEVKFADNG-YWMVVECD-QTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp SCEEEEEECTTS-SEEEEEES-SBEEEEETTSSTTC-BSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEeCCC-CEEEEEeC-CeEEEEEcCCCCcc-eeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEE
Confidence 999999999999 89999994 59999999988731 11222223444444 69999965 89999888 999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
....
T Consensus 291 ~~~~ 294 (343)
T 3lrv_A 291 DKKT 294 (343)
T ss_dssp CTTT
T ss_pred cccc
Confidence 7653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=245.48 Aligned_cols=282 Identities=11% Similarity=0.049 Sum_probs=190.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc---cccccccccc------------------CCCC----Cc----
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL---NALAESETVA------------------GHGA----PQ---- 219 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~---~~~~~~~~~~------------------~~~~----~~---- 219 (479)
..++++++|+|++. +|+++ .++.|++||+.... ....-..... .... ..
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999995 66554 57899999986643 1000000000 0000 00
Q ss_pred -------cccCCCcEEecCCCCceEEEEeCCCCCCeE-EEEeCCCeEEEEecC--CCCccccCCCCcc--cCCCcEEEEE
Q 039302 220 -------VLNQSPLVKFGGHKDEGYAIDWNPVAPGRL-VSGDCNSCIHLWEPA--SDATWNVDPNPFI--GHAASVEDLQ 287 (479)
Q Consensus 220 -------~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l-~sg~~dg~I~lwd~~--~~~~~~~~~~~~~--~h~~~V~~l~ 287 (479)
.....+.....+|...|++++|+|++. +| ++|+.||.|+||++. ++... ..+. .|...|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES-RLIACADSDKSLLVFDVDKTSKNVL----KLRKRFCFSKRPNAIS 156 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSS-EEEEEEGGGTEEEEEEECSSSSSCE----EEEEEEECSSCEEEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCC-EEEEEECCCCeEEEEECcCCCCcee----eeeecccCCCCceEEE
Confidence 000111223346777899999999998 75 899999999999998 54332 2232 5778999999
Q ss_pred ECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCC---CCcEEEEEeCCCeEEEEeCCCCCCCC
Q 039302 288 WSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRL---ASCLLASGSDDGTFSIHDLRLLKGGD 361 (479)
Q Consensus 288 ~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~---~~~~l~sgs~dg~i~iwDlr~~~~~~ 361 (479)
|+|++. +|++|+.+|.|++|++..... +...+.+|...|++++|+|+ + .+|++|+.|+.|++||+++..
T Consensus 157 ~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~--- 231 (450)
T 2vdu_B 157 IAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCF--- 231 (450)
T ss_dssp ECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTT---
T ss_pred EcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCc---
Confidence 999998 999999999999999988752 22366789999999999999 6 899999999999999999877
Q ss_pred ceEEE-eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee---cC
Q 039302 362 SVVAH-FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH---QG 437 (479)
Q Consensus 362 ~~~~~-~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h---~g 437 (479)
.+.. +.+|...|++++|+ + +.+|++++.|+.|++||+........... . ............++..+... ..
T Consensus 232 -~~~~~~~~h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 232 -IVDKWLFGHKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDY-N-SLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp -CEEEECCCCSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEEC-H-HHHGGGCCTTSBC----------CB
T ss_pred -eeeeeecCCCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecc-h-hhhhhhhhhcccccccccccccccc
Confidence 5665 66899999999999 4 59999999999999999987642100000 0 00000000000011000000 11
Q ss_pred CCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 438 QKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 438 ~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
...|.+++|+|++..+++++..++ |.||++
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 236999999999976666663666 999998
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=243.02 Aligned_cols=232 Identities=12% Similarity=0.117 Sum_probs=174.1
Q ss_pred cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeE
Q 039302 179 SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCI 258 (479)
Q Consensus 179 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I 258 (479)
+++ .++++|+.||+|++||+.. .+.+..+. ...|.++.|+|. +++|+.|++|
T Consensus 46 ~d~-~~l~sg~~Dg~v~iwd~~~---------------------~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i 97 (343)
T 3lrv_A 46 YDK-WVCMCRCEDGALHFTQLKD---------------------SKTITTIT--TPNPRTGGEHPA----IISRGPCNRL 97 (343)
T ss_dssp EEE-EEEEEEEETTEEEEEEESS---------------------SSCEEEEE--EECCCTTCCCCS----EEEECSTTEE
T ss_pred CCC-CEEEEECCCCcEEEEECCC---------------------CcEEEEEe--cCCceeeeeCCc----eEEecCCCeE
Confidence 444 7899999999999999987 45555554 456788888886 9999999999
Q ss_pred EEEecCCCC------ccccCCCCcccCCCcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCCEEE
Q 039302 259 HLWEPASDA------TWNVDPNPFIGHAASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNADVNV 329 (479)
Q Consensus 259 ~lwd~~~~~------~~~~~~~~~~~h~~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~v~~ 329 (479)
++|+..... ..........+|...|.+++|+| ++. +|++|+.||+|++||+++++ +.... ..|...|++
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSS 175 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCE
T ss_pred EEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEE
Confidence 999875321 00000111235668999999999 888 99999999999999999886 44444 445668999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE-EEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV-AHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~-~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
++|+|++ .+|++|+.||.|+|||+++.. .+ ..+.. |..+|++++|+|++ .+|++++ |+.|++||++.....
T Consensus 176 ~~~~pdg-~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 176 GVLHKDS-LLLALYSPDGILDVYNLSSPD----QASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp EEECTTS-CEEEEECTTSCEEEEESSCTT----SCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC
T ss_pred EEECCCC-CEEEEEcCCCEEEEEECCCCC----CCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc
Confidence 9999999 899999999999999999987 44 77888 99999999999965 8999999 559999999887421
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCC-CCe--eeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDL--KELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V--~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
..+..+..+ ..+ .+++|+|++..++++++.++ ++||++..
T Consensus 249 ----------------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 249 ----------------------LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp ----------------------BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ----------------------eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 001111111 123 46999999974444444255 99998743
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=224.99 Aligned_cols=241 Identities=20% Similarity=0.354 Sum_probs=198.1
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--cCCCCceEEEEeCCCCCCeE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--GGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~~~l 249 (479)
+++|+|++++ +||+|. |++|+|||+.+ ++.+..+ .+|...|++++|+|++. +|
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~t---------------------g~~~~~~~~~~~~~~V~~v~~~~~~~-~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASS---------------------GDILQLLQMEQPGEYISSVAWIKEGN-YL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTT---------------------CCEEEEEECCSTTCCEEEEEECTTSS-EE
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCC---------------------CCEEEEEEecCCCCeEEEEEECCCCC-EE
Confidence 5889999876 788754 89999999987 4555544 46778999999999998 99
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++|+.||+|++|++.++... ..+.+|...+.++.+. +. ++++++.++.+++|+.......+..+.+|...+..
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~----~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRL----RNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp EEEETTSEEEEEETTTTEEE----EEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred EEEECCCcEEEeecCCceeE----EEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence 99999999999999876542 4577899988887765 44 89999999999999999887677888999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE--EEEeCCCcEEEEECCCCCCh
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL--AVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l--as~s~Dg~I~iwdl~~~~~~ 407 (479)
+.|++.+ .+|++++.||.|++||+++.+...........|...|.++.|+|.+..++ ++++.++.|++||.....
T Consensus 156 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-- 232 (318)
T 4ggc_A 156 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-- 232 (318)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--
T ss_pred EEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--
Confidence 9999999 89999999999999999987654445677778999999999999877765 455678999999998763
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE-cCCC-ceEEeeecc
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST-AADG-FNILMPSNI 470 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~-~~dg-i~iw~~~~~ 470 (479)
..........+..+.|+|.+..+++++ +.|+ |+||++.+.
T Consensus 233 -----------------------~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 233 -----------------------CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp -----------------------EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred -----------------------ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 233344456799999999998766554 3566 999987654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=242.95 Aligned_cols=262 Identities=8% Similarity=0.085 Sum_probs=190.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccc---------cccCCCCCccccCCCcEEec-CC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESE---------TVAGHGAPQVLNQSPLVKFG-GH 232 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~h 232 (479)
+........|.+|+|+|+| .++||++.|++|+ |.... ..+.... .....+.......+....+. .|
T Consensus 9 ~~~~~~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~-~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~ 84 (588)
T 2j04_A 9 VDRKEFEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYA-KDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP 84 (588)
T ss_dssp ECSCCCSSSSCCEEECTTS-CEEEECSSSEEEE--EECCC-SCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC
T ss_pred ccHhHhhccEEEEEECCCC-CEEEEEcCCceee--ccccc-ceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC
Confidence 3445567899999999999 8999999999998 53322 1110000 00000000111112111222 55
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC-----cEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA-----SVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
...|.+++|+|+|. +||+++.||.|+||+... . ...+. |.. .|.+++|||+|+ +||+|+.||+|+|
T Consensus 85 ~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~----l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkI 155 (588)
T 2j04_A 85 VCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--M----LTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQF 155 (588)
T ss_dssp SCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--E----EEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEE
T ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--e----eeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEE
Confidence 77999999999998 999999999999999533 1 12234 444 599999999999 9999999999999
Q ss_pred EEcCCCCc------eeeEE----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEE
Q 039302 308 WDTRVGKS------ALMSF----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTS 376 (479)
Q Consensus 308 wD~~~~~~------~~~~~----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~ 376 (479)
||+.++.. .+..+ .+|...|.+++|+|++ |++++.|++|++||+..... .....++ .+|...|.+
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~-~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH-QPVSRMIQNASRRKITD 231 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS-CCCEEEEECCCSSCCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc-ccceeeecccccCcEEE
Confidence 99998742 24555 5677899999999987 78889999999999987662 1124566 478899999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEE--eCCCCcEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHW--HTQVPGMI 454 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w--~p~~~~ll 454 (479)
++|+ + ..||+++ +++|++||+.... ...+.++++..|.+++| +|++ ..+
T Consensus 232 vaFs--g-~~LASa~-~~tIkLWd~~~~~------------------------~~~~~~gh~~~V~~va~~~s~d~-~~L 282 (588)
T 2j04_A 232 LKIV--D-YKVVLTC-PGYVHKIDLKNYS------------------------ISSLKTGSLENFHIIPLNHEKES-TIL 282 (588)
T ss_dssp EEEE--T-TEEEEEC-SSEEEEEETTTTE------------------------EEEEECSCCSCCCEEEETTCSSC-EEE
T ss_pred EEEE--C-CEEEEEe-CCeEEEEECCCCe------------------------EEEEEcCCCceEEEEEeeeCCCC-CEE
Confidence 9999 4 8899887 6999999998763 11333344457999999 9998 478
Q ss_pred EEEcCCCceEEeeecc
Q 039302 455 VSTAADGFNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dgi~iw~~~~~ 470 (479)
++++.+|.++|....+
T Consensus 283 a~a~edG~klw~~d~~ 298 (588)
T 2j04_A 283 LMSNKTSYKVLLEDEL 298 (588)
T ss_dssp EECSSCEEEEEESSSE
T ss_pred EEEcCCCCEEEeeccE
Confidence 8888777678876543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=260.05 Aligned_cols=220 Identities=24% Similarity=0.335 Sum_probs=183.0
Q ss_pred eeEEEEecCCcceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.....+.+|.+.|++++|+|+ + .+|++|+.||.|++||+... ....+..+.+|...|+
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~-------------------~~~~~~~~~~h~~~V~ 103 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIAVHAVHSASVN 103 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSSCEE
T ss_pred ccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCC-------------------cccccccccCCCCCeE
Confidence 344567899999999999987 5 79999999999999998862 1235677889999999
Q ss_pred EEEeCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-------------CCcEEEEEeCC
Q 039302 238 AIDWNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-------------ESDVFASCSVD 302 (479)
Q Consensus 238 ~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-------------~~~~l~s~s~d 302 (479)
+++|+|+ +. .|++|+.||.|++||+.+..... ...+.+|...|.+++|+|. +. +|++|+.|
T Consensus 104 ~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~d 179 (753)
T 3jro_A 104 SVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGAD 179 (753)
T ss_dssp EEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETT
T ss_pred EEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECC
Confidence 9999999 76 99999999999999998753322 2346789999999999995 55 89999999
Q ss_pred CcEEEEEcCCCC---ceeeEEecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCC-ceEEEeecCCCCeEE
Q 039302 303 GNIAIWDTRVGK---SALMSFKAHNADVNVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGD-SVVAHFEYHKHPVTS 376 (479)
Q Consensus 303 g~I~iwD~~~~~---~~~~~~~~h~~~v~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~-~~~~~~~~h~~~I~~ 376 (479)
|.|++||+++.. .+...+.+|...|++++|+|++ +.+|++|+.||.|++||++...... ..+.....|...|++
T Consensus 180 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 999999999874 2455678899999999999993 3999999999999999999864211 123334568899999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
++|+|++ .+|++|+.||.|++|++...
T Consensus 260 l~~spdg-~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 260 ASWSLSG-NVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEECTTT-CCEEEECSSSCEECCBCCSS
T ss_pred EEEcCCC-CEEEEEcCCCEEEEEecCCC
Confidence 9999965 89999999999999999853
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=227.35 Aligned_cols=242 Identities=11% Similarity=0.094 Sum_probs=189.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+...+.+++|+|++..++++++.++.|++||+.. .+.+..+..+. .+.+++|+|++.
T Consensus 29 ~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---------------------~~~~~~~~~~~-~v~~~~~spdg~ 86 (391)
T 1l0q_A 29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---------------------NNVIATVPAGS-SPQGVAVSPDGK 86 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECTTSS
T ss_pred ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC---------------------CeEEEEEECCC-CccceEECCCCC
Confidence 34456999999999977778988999999999976 45566666555 899999999998
Q ss_pred CeE-EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 247 GRL-VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 247 ~~l-~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
+| ++++.++.|++||+.++.... .+. +...+.+++|+|+++.++++++.++.|++||+++++ .+..+..+ .
T Consensus 87 -~l~~~~~~~~~v~v~d~~~~~~~~----~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~ 158 (391)
T 1l0q_A 87 -QVYVTNMASSTLSVIDTTSNTVAG----TVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-R 158 (391)
T ss_dssp -EEEEEETTTTEEEEEETTTTEEEE----EEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-S
T ss_pred -EEEEEECCCCEEEEEECCCCeEEE----EEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-C
Confidence 66 556677999999998754321 222 345789999999998555888899999999999875 55555544 5
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCcEEEEECC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS---ADNQLTIWDLS 402 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s---~Dg~I~iwdl~ 402 (479)
.+.+++|+|++..++++++.++.|++||+++.. .+..+. +...+.+++|+|++ .+|++++ .++.|++||+.
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe----EEEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECC
Confidence 679999999995555788899999999999876 566555 56789999999966 6677666 79999999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
... .+.....+..+.+++|+|++..++++++.++ |++|++.+
T Consensus 233 ~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 233 TNK-------------------------ITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp TTE-------------------------EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred CCe-------------------------EEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 763 2222233456899999999987778888887 99998764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=252.85 Aligned_cols=206 Identities=14% Similarity=0.128 Sum_probs=166.7
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|...|++++|+| + .+|++++.|++|+|||+.. .+.+.++. |...|++++|+|+
T Consensus 54 ~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~---------------------~~~~~~~~-~~~~V~~v~~sp~ 109 (902)
T 2oaj_A 54 KLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYS---------------------QKVLTTVF-VPGKITSIDTDAS 109 (902)
T ss_dssp ECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTT---------------------CSEEEEEE-CSSCEEEEECCTT
T ss_pred EcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCC---------------------CcEEEEEc-CCCCEEEEEECCC
Confidence 456889999999999 6 5899999999999999987 45666675 6679999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCC-------CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDP-------NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~-------~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+. +|++|+.||.|++||+.+........ ..+.+|.+.|++++|+|++...|++|+.||.| +||+++.+ ++
T Consensus 110 g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-~~ 186 (902)
T 2oaj_A 110 LD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-IK 186 (902)
T ss_dssp CS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-EE
T ss_pred CC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-eE
Confidence 98 99999999999999998754311000 34578999999999999865589999999999 99999875 55
Q ss_pred eEEecC------------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE--e---ec-----
Q 039302 318 MSFKAH------------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH--F---EY----- 369 (479)
Q Consensus 318 ~~~~~h------------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~--~---~~----- 369 (479)
..+..| ...|++++|+|++ .+||+|+.||.|++||+++++ ++.. + ..
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~----~~~~r~l~~~~~~~~~~ 261 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH----MIMARTVFETEINVPQP 261 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCC----EEEEECSSCSCTTSCCT
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc----EEEEEeecccccCCCCC
Confidence 566544 5779999999998 899999999999999999876 5543 2 11
Q ss_pred --------CCCCeEEEEEeC----CCCCEEEEEeCC-----CcEEEEECC
Q 039302 370 --------HKHPVTSIEWSP----HEGSTLAVSSAD-----NQLTIWDLS 402 (479)
Q Consensus 370 --------h~~~I~~v~~sp----~~~~~las~s~D-----g~I~iwdl~ 402 (479)
|..+|++++|+| +++.+|++|+.| ..|.+|++.
T Consensus 262 ~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 355899999964 333678888776 379999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-26 Score=220.68 Aligned_cols=256 Identities=14% Similarity=0.137 Sum_probs=180.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+..+.+.+.+..++++++.+++|+|||+.. .+++..+. |...|.+++|+++ .++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~---------------------~~~~~~~~-~~~~v~~v~~~~~---~~~ 114 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK---------------------KQDVSRIK-VDAPVKDLFLSRE---FIV 114 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTT---------------------TEEEEEEE-CSSCEEEEEECSS---EEE
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCC---------------------CcEEEEEE-CCCceEEEEEcCC---EEE
Confidence 5888999998866667888899999999987 55666665 5669999999875 444
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE--EeCCCcEEEEEcCCCC--------------
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS--CSVDGNIAIWDTRVGK-------------- 314 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s--~s~dg~I~iwD~~~~~-------------- 314 (479)
++. ++.|++||+.+.... ...+.. +...+++++ . +++. |+.||.|++||++++.
T Consensus 115 ~~~-~~~i~i~d~~~~~~~---~~~~~~---~~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 115 VSY-GDVISVFKFGNPWKR---ITDDIR---FGGVCEFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp EEE-TTEEEEEESSTTCCB---SSCCEE---EEEEEEEET--T-EEEEEESSCTTCEEEEECCC----------------
T ss_pred EEE-cCEEEEEECCCCcee---eEEecc---CCceEEEEc--c-EEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 444 789999999875221 122333 445566777 3 5665 5889999999999753
Q ss_pred ce-eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEee-c-CCCCeEEEEEeCCCCCEEEEE
Q 039302 315 SA-LMSFKAHNADVNVISWNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFE-Y-HKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 315 ~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~-~-h~~~I~~v~~sp~~~~~las~ 390 (479)
.+ +..+.+|...|++++|+|++ .+||+|+.||+ |+|||+++++ ++..+. + |..+|++++|+|++ .+|+++
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~----~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~ 258 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGV----LVREFRRGLDRADVVDMKWSTDG-SKLAVV 258 (355)
T ss_dssp --CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCC----EEEEEECTTCCSCEEEEEECTTS-CEEEEE
T ss_pred CcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCc----EEEEEEcCCCCCcEEEEEECCCC-CEEEEE
Confidence 12 67789999999999999998 99999999998 9999999988 788888 5 99999999999965 999999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+.|++|+|||+........ ..+..... ................. .......++|++++. .+++++.|| +.+|.+.
T Consensus 259 s~d~~v~iw~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 259 SDKWTLHVFEIFNDQDNKR-HALKGWIN-MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVV 335 (355)
T ss_dssp ETTCEEEEEESSCCSCCCS-EETTTTEE-CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEE
T ss_pred ECCCEEEEEEccCCCCccc-ccccceee-ccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEE
Confidence 9999999999986531100 00000000 00000000011111111 112357799999986 666666677 8888876
Q ss_pred cc
Q 039302 469 NI 470 (479)
Q Consensus 469 ~~ 470 (479)
.-
T Consensus 336 ~~ 337 (355)
T 3vu4_A 336 FD 337 (355)
T ss_dssp EE
T ss_pred cC
Confidence 53
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=231.16 Aligned_cols=243 Identities=13% Similarity=0.082 Sum_probs=193.4
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|.+.|++++|+|++ .++++++.++.|++||+.. .+.+..+..|...+.+++|+|+
T Consensus 165 ~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 165 YKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKT---------------------LAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp HHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTT---------------------CCEEEEEECSSSSEEEEEEETT
T ss_pred ccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCC---------------------ceEEEEEcCCCCCeeEEEEcCC
Confidence 34789999999999888 7999999999999999986 5667788889999999999999
Q ss_pred CCCeE-EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--------CCCcEEEEEcCCCCc
Q 039302 245 APGRL-VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--------VDGNIAIWDTRVGKS 315 (479)
Q Consensus 245 ~~~~l-~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--------~dg~I~iwD~~~~~~ 315 (479)
+. +| ++++.++.|++||+.++.... .+.. ...+.+++|+|++. .+++++ .||.|++||+++++
T Consensus 223 ~~-~l~~~~~~~~~i~~~d~~~~~~~~----~~~~-~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~- 294 (433)
T 3bws_A 223 RD-LVYCSNWISEDISVIDRKTKLEIR----KTDK-IGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK- 294 (433)
T ss_dssp TT-EEEEEETTTTEEEEEETTTTEEEE----ECCC-CSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE-
T ss_pred CC-EEEEEecCCCcEEEEECCCCcEEE----EecC-CCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc-
Confidence 98 66 566689999999997754321 2222 34699999999998 777776 58899999999874
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC---
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA--- 392 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~--- 392 (479)
.+. ...|...+.+++|+|++..++++++.++.|++||+++.+ .+..+. +...+.+++|+|++ .+|++++.
T Consensus 295 ~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~ 367 (433)
T 3bws_A 295 LID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK----VQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPN 367 (433)
T ss_dssp EEE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTS-SEEEEEECCCC
T ss_pred EEe-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc----EEEEec-CCCCCCeEEEcCCC-CEEEEEecCCC
Confidence 333 335566899999999996677888999999999999776 566665 67889999999965 77777765
Q ss_pred ------------CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 393 ------------DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 393 ------------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
||.|++||+.... ++....++..+.+++|+|++..+++++..+
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTDT-------------------------VKEFWEAGNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTTE-------------------------EEEEEECSSSEEEEEECTTSCEEEEEETTT
T ss_pred ccccccccccccceEEEEEECCCCc-------------------------EEEEecCCCCCceEEEcCCCCEEEEEECCC
Confidence 5799999998763 233333346799999999998666666656
Q ss_pred C-ceEEeeec
Q 039302 461 G-FNILMPSN 469 (479)
Q Consensus 461 g-i~iw~~~~ 469 (479)
+ |.+|++..
T Consensus 423 ~~i~v~~~~~ 432 (433)
T 3bws_A 423 HQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEETT
T ss_pred CeEEEEEecC
Confidence 6 99998754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=232.79 Aligned_cols=208 Identities=16% Similarity=0.267 Sum_probs=152.1
Q ss_pred EEecCCcceeEEEEec--------CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc
Q 039302 164 RKVAHQGCVNRIRAMS--------QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE 235 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p--------~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (479)
.+.+|.+.|++|+|+| ++ ++||||+.|++|+|||+.. ..++..+.+|...
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~---------------------~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTD---------------------EGPILAGYPLSSP 188 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEET---------------------TEEEEEEEECSSC
T ss_pred ccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCC---------------------CceeeeecCCCCC
Confidence 3568999999999998 45 8999999999999999976 4556677788899
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---------------------CCCCcccCCCcEEEEEEC-CCCC
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---------------------DPNPFIGHAASVEDLQWS-PTES 293 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---------------------~~~~~~~h~~~V~~l~~s-p~~~ 293 (479)
|.+++|+|++..+|++|+.||+|++||+.++..... ......+|...|.++.|+ |++.
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~ 268 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS 268 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC
Confidence 999999999865899999999999999987543110 011234688889999997 6776
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEE-------------------EcCCCCcEEEEEeCCCeEEEEeC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVIS-------------------WNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~-------------------~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.+++++.|+++++||++..+ ....+..|...+..+. +.+.+..++++|+.||.|+|||+
T Consensus 269 -~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 269 -GILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp -EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred -EEEEEeCCCCEEEEECccCC-CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence 99999999999999998764 3333333433333332 22334357788999999999999
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.++. .+..+..|..+|++|+|+|++ ++||+++.+| +.+|.+
T Consensus 347 ~~~~----~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 347 YEKD----SNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TCTT----CCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEE
T ss_pred CCCc----EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEE
Confidence 9887 567778899999999999965 9999998776 555655
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=223.65 Aligned_cols=253 Identities=17% Similarity=0.222 Sum_probs=192.2
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+... ..+|++|+ .++.|.||++..
T Consensus 39 ~~~v~~~~~~~~~~~--------g~~l~~~~-----~dg~i~iw~~~~-------------------------------- 73 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLP--------GNFLIAGS-----WANDVRCWEVQD-------------------------------- 73 (368)
T ss_dssp SSCEEEEEECCTTSS--------SEEEEEEE-----TTSEEEEEEECT--------------------------------
T ss_pred CCceEEEEEcCCCCC--------ceEEEEEC-----CCCcEEEEEcCC--------------------------------
Confidence 345667888887310 24677764 678999998831
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
....+...+.+|.+.|++++|+|++ .+|++++.||.|++||+.. .+. ..+
T Consensus 74 -------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~---------------------~~~-~~~ 123 (368)
T 3mmy_A 74 -------SGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSS---------------------NQA-IQI 123 (368)
T ss_dssp -------TSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEE-EEE
T ss_pred -------CCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCC---------------------CCc-eee
Confidence 0123335678899999999999988 7888999999999999987 333 335
Q ss_pred cCCCCceEEEEe--CCCCCCeEEEEeCCCeEEEEecCCCCccccCC----------------------------------
Q 039302 230 GGHKDEGYAIDW--NPVAPGRLVSGDCNSCIHLWEPASDATWNVDP---------------------------------- 273 (479)
Q Consensus 230 ~~h~~~v~~l~~--s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~---------------------------------- 273 (479)
.+|...|.+++| ++++. +|++|+.||.|++||+.++.......
T Consensus 124 ~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 124 AQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp EECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred ccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence 679999999999 88887 89999999999999998754311100
Q ss_pred ---CCcccCCCcEEEEEECCCCC---cEEEEEeCCCcEEEEEcCCCC--ceeeEEecCCC------------CEEEEEEc
Q 039302 274 ---NPFIGHAASVEDLQWSPTES---DVFASCSVDGNIAIWDTRVGK--SALMSFKAHNA------------DVNVISWN 333 (479)
Q Consensus 274 ---~~~~~h~~~V~~l~~sp~~~---~~l~s~s~dg~I~iwD~~~~~--~~~~~~~~h~~------------~v~~l~~~ 333 (479)
.....+...+.++++.+... ..+++++.||.|++||++... .....+..|.. .|++++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 00001223344555544333 239999999999999999874 24566677765 79999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|++ .+|++|+.||.|++||+++.. ++..+..|..+|++++|+|++ .+|++++.|+..+.|++-..
T Consensus 283 p~~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g-~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 283 PVH-GTLATVGSDGRFSFWDKDART----KLKTSEQLDQPISACCFNHNG-NIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp TTT-CCEEEEETTSCEEEEETTTTE----EEEECCCCSSCEEEEEECTTS-SCEEEEECCCSTTCGGGCCT
T ss_pred cCC-CEEEEEccCCeEEEEECCCCc----EEEEecCCCCCceEEEECCCC-CeEEEEecccccccccccCC
Confidence 998 899999999999999999887 789999999999999999965 89999999987666665443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=223.14 Aligned_cols=241 Identities=10% Similarity=0.072 Sum_probs=172.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|.+.|++++|+|++ .+||+|+.+| ++||++.. ........ ...+..++|.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~---------------------~~~~~~~~--~~~~~~~~~~~ 68 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHP---------------------VAHIMSQE--MRHLSKVRMLH 68 (355)
T ss_dssp -----CCCCCEEEECTTS-SEEEEECSSE-EEEEEETT---------------------EEEEEEEE--CSCCCEEEECT
T ss_pred ccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCC---------------------cceeeeee--cCCeEEEEEcC
Confidence 557899999999999999 7888988775 78999876 22222222 22477888888
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
.+...+++|+.|+.|+|||+.++.... .+ .|...|.+++|+++. ++++. |+.|++||+++....+..+..
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~----~~-~~~~~v~~v~~~~~~---~~~~~-~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVS----RI-KVDAPVKDLFLSREF---IVVSY-GDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEE----EE-ECSSCEEEEEECSSE---EEEEE-TTEEEEEESSTTCCBSSCCEE-
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEE----EE-ECCCceEEEEEcCCE---EEEEE-cCEEEEEECCCCceeeEEecc-
Confidence 887344678888999999998754422 22 356799999999763 44443 789999999987224444443
Q ss_pred CCCEEEEEEcCCCCcEEEE--EeCCCeEEEEeCCCCCCC-----------Cce-EEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 324 NADVNVISWNRLASCLLAS--GSDDGTFSIHDLRLLKGG-----------DSV-VAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~s--gs~dg~i~iwDlr~~~~~-----------~~~-~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
....+++++ .++++ |+.+|.|++||+++.... ..+ +..+.+|..+|++++|+|++ .+|++
T Consensus 139 --~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s 212 (355)
T 3vu4_A 139 --FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVAT 212 (355)
T ss_dssp --EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred --CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEE
Confidence 445566777 34444 689999999999975410 012 77899999999999999955 99999
Q ss_pred EeCCCc-EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-c-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 390 SSADNQ-LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-Q-GQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 390 ~s~Dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
|+.|++ |+|||++... .+.... . +...|++++|+|++. +|++++.|+ |+||
T Consensus 213 ~s~d~~~v~iwd~~~~~------------------------~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGV------------------------LVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVF 267 (355)
T ss_dssp EETTCSEEEEEETTTCC------------------------EEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEE
T ss_pred EeCCCCEEEEEECCCCc------------------------EEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEE
Confidence 999998 9999998763 122222 1 235799999999986 778888887 9999
Q ss_pred eeecc
Q 039302 466 MPSNI 470 (479)
Q Consensus 466 ~~~~~ 470 (479)
++...
T Consensus 268 ~~~~~ 272 (355)
T 3vu4_A 268 EIFND 272 (355)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=219.07 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=147.5
Q ss_pred CCcceeEEEEecC----CCcEEEEEeC--------------------CceEEEEeCCCCcccccccccccCCCCCccccC
Q 039302 168 HQGCVNRIRAMSQ----NPHICASWAD--------------------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQ 223 (479)
Q Consensus 168 H~~~V~~v~~~p~----~~~~lat~s~--------------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (479)
|.+.|++|+++|+ + .++++++. |+.|++|++.. .+
T Consensus 110 ~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~--------------------dG 168 (356)
T 2w18_A 110 EIREIRALFCSSDDESEK-QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE--------------------DG 168 (356)
T ss_dssp SEEEEEEECC------CC-EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT--------------------TS
T ss_pred cccceEEEEECCCccccc-cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC--------------------CC
Confidence 4567888888888 5 45555442 66666666644 35
Q ss_pred CCcEEecCCCCceEEEEeCC---CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC---CCcEEEEEECCCCCcEE-
Q 039302 224 SPLVKFGGHKDEGYAIDWNP---VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH---AASVEDLQWSPTESDVF- 296 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~---~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~~l- 296 (479)
+.+..+.+|...+..++|++ ++. +|++|+.|++|+|||+.+++.. ..+.+| ...|.+++|+|++. ++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l----~tL~g~~~~v~~v~~vafSpdG~-~lv 242 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLL----KKMHIDDSYQASVCHKAYSEMGL-LFI 242 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEE----EEEECCC---CCCEEEEEEETTE-EEE
T ss_pred ceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEE----EEEcCCCcceeeeEEEEECCCCC-EEE
Confidence 66777889999999999999 555 9999999999999999987653 234443 34688889999987 44
Q ss_pred -----------EEEeCCCcEEEEEcCCCCceeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 039302 297 -----------ASCSVDGNIAIWDTRVGKSALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG 360 (479)
Q Consensus 297 -----------~s~s~dg~I~iwD~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~ 360 (479)
++|+.|++|++||..+++ .+..+ .+|...+.+..++ + .++|+|+.|++|+|||+++++
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk-- 316 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ-- 316 (356)
T ss_dssp EEC------------CCEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS--
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCCE-EEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc--
Confidence 678899999999999875 33333 3566555555555 4 789999999999999999988
Q ss_pred CceEEEeecCCCCeE-EEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 361 DSVVAHFEYHKHPVT-SIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 361 ~~~~~~~~~h~~~I~-~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.+.++.+|...+. +++|+|++ .+|++|+.|++|+|||+.
T Consensus 317 --~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 317 --CTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp --EEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEEC
T ss_pred --EEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecCC
Confidence 8999999987655 68999965 999999999999999963
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-26 Score=227.69 Aligned_cols=197 Identities=11% Similarity=0.112 Sum_probs=160.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----ceEEEEe
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-----EGYAIDW 241 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~ 241 (479)
.|...|.+++|+|+| .+||+++.||.|+|||... .+..+. |.. .+.+++|
T Consensus 83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-----------------------~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-----------------------MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-----------------------EEEECC-CSSCSTTTCEEEEEE
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-----------------------eeeecc-CCCccccccEEEEEE
Confidence 668899999999999 7889999999999999543 334445 554 5999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCc-------cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDAT-------WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
||++. +||+|+.||+|+||++.++.. .........+|...|.+++|+|++ +++++.|++|++||+....
T Consensus 138 SPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 138 NPIES-SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp CSSSS-CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSS
T ss_pred cCCCC-EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCc
Confidence 99998 999999999999999987532 011011236788999999999988 7888999999999998875
Q ss_pred c--eeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE--eCCCCCEEEE
Q 039302 315 S--ALMSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW--SPHEGSTLAV 389 (479)
Q Consensus 315 ~--~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~--sp~~~~~las 389 (479)
. ....+ .+|...|.+++|+ + ..||+++ ++.|++||+.... ......+|...|++|+| +|++ ..|++
T Consensus 214 ~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~----~~~~~~gh~~~V~~va~~~s~d~-~~La~ 284 (588)
T 2j04_A 214 HQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYS----ISSLKTGSLENFHIIPLNHEKES-TILLM 284 (588)
T ss_dssp SCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTE----EEEEECSCCSCCCEEEETTCSSC-EEEEE
T ss_pred cccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCe----EEEEEcCCCceEEEEEeeeCCCC-CEEEE
Confidence 2 22345 4788999999999 5 7889887 6999999999876 42333389999999999 9955 89999
Q ss_pred EeCCCcEEEEECC
Q 039302 390 SSADNQLTIWDLS 402 (479)
Q Consensus 390 ~s~Dg~I~iwdl~ 402 (479)
++.||+ ++|.+.
T Consensus 285 a~edG~-klw~~d 296 (588)
T 2j04_A 285 SNKTSY-KVLLED 296 (588)
T ss_dssp CSSCEE-EEEESS
T ss_pred EcCCCC-EEEeec
Confidence 999999 999985
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=208.79 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=140.1
Q ss_pred CceEEEEeCCC----CCCeEEEEeC--------------------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC
Q 039302 234 DEGYAIDWNPV----APGRLVSGDC--------------------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 234 ~~v~~l~~s~~----~~~~l~sg~~--------------------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 289 (479)
.+|.+|+++|+ +. .+++++. |+.|++|++...+... ..+.+|...++.++|+
T Consensus 112 ~~v~sla~spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~---~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 112 REIRALFCSSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK---ENQFLMPPEETILTFA 187 (356)
T ss_dssp EEEEEECC------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE---EEEEECCCSSCEEEEE
T ss_pred cceEEEEECCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee---eeeccCCCceeeEEee
Confidence 36778888888 55 6666553 7777788775433221 3355777788888888
Q ss_pred C---CCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC---CCEEEEEEcCCCCcEE------------EEEeCCCeEEE
Q 039302 290 P---TESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN---ADVNVISWNRLASCLL------------ASGSDDGTFSI 351 (479)
Q Consensus 290 p---~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l------------~sgs~dg~i~i 351 (479)
| ++. +|++++.|++|+|||+++++ ++.++.+|. ..+.+++|+|++ .++ ++|+.|++|++
T Consensus 188 ~~~g~~~-~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 188 EVQGMQE-ALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEETSTT-EEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEE
T ss_pred ccCCCCc-eEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEE
Confidence 8 445 89999999999999999986 777777643 367788999988 554 67889999999
Q ss_pred EeCCCCCCCCceEEEe-----ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 352 HDLRLLKGGDSVVAHF-----EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~-----~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
||..++. .+..+ .+|...+.+..++ +.++++++.|++|+|||+.+++
T Consensus 265 Wd~~tgk----~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk--------------------- 316 (356)
T 2w18_A 265 INPKTTL----SVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQ--------------------- 316 (356)
T ss_dssp EETTTTE----EEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCS---------------------
T ss_pred EECCCCE----EEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCc---------------------
Confidence 9999877 55554 3677666666665 4799999999999999999874
Q ss_pred CCCceEEeecCCC-Ce-eeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 427 LPPQLLFIHQGQK-DL-KELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 427 ~p~~l~~~h~g~~-~V-~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
++....+|. .+ ..++|+|+++ +|+|++.|+ |+||++
T Consensus 317 ----~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 ----CTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ----EEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred ----EEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence 333333443 34 4689999996 888899888 999986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=218.19 Aligned_cols=246 Identities=12% Similarity=0.057 Sum_probs=190.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-----EecCCCCceEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-----KFGGHKDEGYA 238 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~ 238 (479)
....+...+.+++|+| +..++++++.++.|++||+.. .+.+. .+.+|...|.+
T Consensus 117 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~---------------------g~~~~~~~~~~~~~~~~~v~~ 174 (433)
T 3bws_A 117 SRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINS---------------------GQTVRLSPPEKYKKKLGFVET 174 (433)
T ss_dssp EEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTT---------------------CCEEEECCCHHHHTTCCEEEE
T ss_pred EEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCC---------------------CeEeeecCcccccccCCceeE
Confidence 4445556678999999 548999989999999999986 23333 35688899999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|++++. ++++++.|+.|++||+.++... ..+..|...+.+++|+|++..++++++.|+.|++||+++++ .+.
T Consensus 175 ~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~ 248 (433)
T 3bws_A 175 ISIPEHNE-LWVSQMQANAVHVFDLKTLAYK----ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIR 248 (433)
T ss_dssp EEEGGGTE-EEEEEGGGTEEEEEETTTCCEE----EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEE
T ss_pred EEEcCCCE-EEEEECCCCEEEEEECCCceEE----EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEE
Confidence 99999887 9999999999999999775442 33557888999999999999555677789999999999874 444
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEe--------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGS--------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs--------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.+.. ...+.+++|+|++ .+|++++ .||.|++||+++.+ .+..+ .|...+.+++|+|++..+++++
T Consensus 249 ~~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~~~-~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 249 KTDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEK----LIDTI-GPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp ECCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTE----EEEEE-EEEECEEEEEECSSTTEEEEEE
T ss_pred EecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCc----EEeec-cCCCCcceEEECCCCCEEEEEe
Confidence 4444 4569999999999 6777777 58899999999876 45544 4566899999999775677888
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC-----------
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA----------- 459 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~----------- 459 (479)
+.|+.|++||+.... ++........+.+++|+|++..+++++..
T Consensus 322 ~~~~~v~v~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 322 MCCSKIEVYDLKEKK-------------------------VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp TTTTEEEEEETTTTE-------------------------EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred cCCCEEEEEECCCCc-------------------------EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 999999999998653 22222233579999999999756665553
Q ss_pred ---CC-ceEEeeec
Q 039302 460 ---DG-FNILMPSN 469 (479)
Q Consensus 460 ---dg-i~iw~~~~ 469 (479)
|| |.+|++.+
T Consensus 377 g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 377 GLVLGKVYVIDTTT 390 (433)
T ss_dssp CSSCCEEEEEETTT
T ss_pred cccceEEEEEECCC
Confidence 34 88898754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=208.22 Aligned_cols=227 Identities=10% Similarity=0.096 Sum_probs=176.3
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE-EEEeCCCeEEEE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL-VSGDCNSCIHLW 261 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l-~sg~~dg~I~lw 261 (479)
.++++++.++.|++||+.. .+.+..+.+|. .+.+++|+|++. +| ++++.++.|++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~---------------------~~~~~~~~~~~-~~~~~~~s~dg~-~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS---------------------NKVTATIPVGS-NPMGAVISPDGT-KVYVANAHSNDVSII 59 (391)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECTTSS-EEEEEEGGGTEEEEE
T ss_pred EEEEEcCCCCEEEEEECCC---------------------CeEEEEeecCC-CcceEEECCCCC-EEEEECCCCCeEEEE
Confidence 6889999999999999987 56666777665 589999999997 55 778899999999
Q ss_pred ecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEE
Q 039302 262 EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLA 341 (479)
Q Consensus 262 d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 341 (479)
|+.++... ..+..+ ..+.+++|+|+++.++++++.++.|++||+.+++ .+..+. +...+.+++|+|++..+++
T Consensus 60 d~~~~~~~----~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 60 DTATNNVI----ATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVK-TGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp ETTTTEEE----EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred ECCCCeEE----EEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEe-CCCCcceEEECCCCCEEEE
Confidence 99775442 223333 3899999999999555667778999999999875 444454 4457899999999944558
Q ss_pred EEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc
Q 039302 342 SGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV 421 (479)
Q Consensus 342 sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 421 (479)
+++.++.|++||+++.+ .+..+..| ..+.+++|+|++..++++++.|+.|++||++...
T Consensus 133 ~~~~~~~v~~~d~~~~~----~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------------- 191 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKA----VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------------- 191 (391)
T ss_dssp EETTTTEEEEEETTTTE----EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----------------
T ss_pred EeCCCCEEEEEECCCCc----EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe----------------
Confidence 89999999999999877 67777765 4669999999774455788889999999998763
Q ss_pred CCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc--CCC-ceEEeeec
Q 039302 422 NAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA--ADG-FNILMPSN 469 (479)
Q Consensus 422 ~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~--~dg-i~iw~~~~ 469 (479)
......++..+.+++|+|++..+++++. .++ |.+|++.+
T Consensus 192 ---------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 192 ---------VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp ---------EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred ---------EEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 2222233457999999999976666664 445 99998754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=203.39 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=184.4
Q ss_pred CceeEEEEecCCcceeEEEEecC--------------CCcEEEEEeC--C---ceEEEEeCCCCcccccccccccCCCCC
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQ--------------NPHICASWAD--T---GHVQVWDFRSHLNALAESETVAGHGAP 218 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~--------------~~~~lat~s~--d---g~V~iwd~~~~~~~~~~~~~~~~~~~~ 218 (479)
+.+....+.+|...+.++++.+. +..++.++.. + +.|++||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----------------- 168 (415)
T 2hqs_A 106 TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----------------- 168 (415)
T ss_dssp CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----------------
T ss_pred CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----------------
Confidence 33444568899999988888752 4344444333 2 7999999875
Q ss_pred ccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC---eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcE
Q 039302 219 QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS---CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDV 295 (479)
Q Consensus 219 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 295 (479)
.....+.+|...+.+++|+|++. +|++++.++ .|++||+.++.. ..+..|...+.+++|+|+++.+
T Consensus 169 -----~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~-----~~l~~~~~~~~~~~~spdg~~l 237 (415)
T 2hqs_A 169 -----YNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPDGSKL 237 (415)
T ss_dssp -----CSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTTSSEE
T ss_pred -----CCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcE-----EEeecCCCcccCEEEcCCCCEE
Confidence 33566778899999999999998 999998875 999999987644 2355677899999999999944
Q ss_pred EEEEeCCCc--EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CC--eEEEEeCCCCCCCCceEEEeecC
Q 039302 296 FASCSVDGN--IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DG--TFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 296 l~s~s~dg~--I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg--~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+++++.++. |++||+++++ ...+..|...+.+++|+|++ ..|++++. ++ .|++||+.... ...+..|
T Consensus 238 a~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~ 309 (415)
T 2hqs_A 238 AFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGA-----PQRITWE 309 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC-----CEECCCS
T ss_pred EEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCC-----EEEEecC
Confidence 447776665 9999999875 35677788899999999999 66776665 45 67888988765 3445667
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH 447 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~ 447 (479)
...+.+++|+|++ .+|++++.+ ..|.+||+.... +..... +..+.+++|+
T Consensus 310 ~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~-------------------------~~~l~~-~~~~~~~~~s 362 (415)
T 2hqs_A 310 GSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG-------------------------VQVLSS-TFLDETPSLA 362 (415)
T ss_dssp SSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC-------------------------EEECCC-SSSCEEEEEC
T ss_pred CCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC-------------------------EEEecC-CCCcCCeEEc
Confidence 7889999999966 777777654 589999998763 111112 2379999999
Q ss_pred CCCCcEEEEEcCCC---ceEEeee
Q 039302 448 TQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 448 p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
|++..+++++.+++ |.+|++.
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCCEEEEEEcCCCccEEEEEECC
Confidence 99986666666554 6666653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=189.17 Aligned_cols=241 Identities=10% Similarity=0.017 Sum_probs=172.8
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s 242 (479)
.+..|.+.|.+++|+|++ .+|++++ ++.|++||+... .+....+.+| ...+.+++|+
T Consensus 36 ~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGD--------------------PSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSC--------------------CSCEECCCTTCCCBCSCCEEC
T ss_pred eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCC--------------------CCceEeccccccccccceEEC
Confidence 566789999999999999 5666655 789999998751 2233333444 3678999999
Q ss_pred CCCCCeEEEEe--CCCeEEEEec--CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 243 PVAPGRLVSGD--CNSCIHLWEP--ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 243 ~~~~~~l~sg~--~dg~I~lwd~--~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|++. +|++++ .++.+.||.+ .++.. ..+..+ ..+..++|+|+++.++++++.++.++||+++.......
T Consensus 94 pdg~-~l~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 94 PDGA-LYAISDKVEFGKSAIYLLPSTGGTP-----RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp TTSS-EEEEEECTTTSSCEEEEEETTCCCC-----EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCC-EEEEEEeCCCCcceEEEEECCCCce-----EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 9998 888888 3345555554 33221 122222 34899999999995555888899999999754333455
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEE-EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC----
Q 039302 319 SFKAHNADVNVISWNRLASCLLAS-GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD---- 393 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~s-gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D---- 393 (479)
.+..+...+.+++|+|++ .+|++ +..++.++||++..... .+..+..|...+.+++|+|++ .+|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPSPSG-DKVVFVSYDADVF 241 (297)
T ss_dssp ECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEEEEEEECTTS-SEEEEEEEETTCC
T ss_pred EcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC---CcEEEecCCcccCCeEECCCC-CEEEEEEcCCCCC
Confidence 667788899999999999 55554 44689999999873332 577788888899999999965 777777765
Q ss_pred -------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 394 -------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 394 -------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
+.|.+||+..... ..+.....+...+..++|+|++..+++++.++
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNV----------------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSC----------------------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCc----------------------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999987631 12222223335799999999998666666554
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-21 Score=193.62 Aligned_cols=222 Identities=10% Similarity=0.018 Sum_probs=168.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCc---eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTG---HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
.+.+|.+.|.+++|+|++ ..||+++.++ .|++||+.. .+. ..+..|...+.+++
T Consensus 173 ~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t---------------------g~~-~~l~~~~~~~~~~~ 229 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN---------------------GAV-RQVASFPRHNGAPA 229 (415)
T ss_dssp EEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT---------------------CCE-EEEECCSSCEEEEE
T ss_pred EEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC---------------------CcE-EEeecCCCcccCEE
Confidence 566789999999999999 5677777765 999999986 333 35667888999999
Q ss_pred eCCCCCCeEE-EEeCCCe--EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CC--cEEEEEcCCCC
Q 039302 241 WNPVAPGRLV-SGDCNSC--IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DG--NIAIWDTRVGK 314 (479)
Q Consensus 241 ~s~~~~~~l~-sg~~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg--~I~iwD~~~~~ 314 (479)
|+|++. +|+ +++.++. |++||+.++.. ..+..|...+.+++|+|+++ .|++++. ++ .|.+||+.++.
T Consensus 230 ~spdg~-~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 230 FSPDGS-KLAFALSKTGSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp ECTTSS-EEEEEECTTSSCEEEEEETTTCCE-----EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC
T ss_pred EcCCCC-EEEEEEecCCCceEEEEECCCCCE-----EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC
Confidence 999998 677 6766654 99999977543 33566788999999999998 6776665 45 67777888764
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
...+..+...+.+++|+|++ .+|++++.+ ..|++||+.+.. . ..+..|. .+.+++|+|++ .+|++++
T Consensus 303 --~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~----~-~~l~~~~-~~~~~~~spdg-~~l~~~s 372 (415)
T 2hqs_A 303 --PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG----V-QVLSSTF-LDETPSLAPNG-TMVIYSS 372 (415)
T ss_dssp --CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC----E-EECCCSS-SCEEEEECTTS-SEEEEEE
T ss_pred --EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC----E-EEecCCC-CcCCeEEcCCC-CEEEEEE
Confidence 34455677789999999999 667666653 589999998766 3 4555554 89999999966 7888877
Q ss_pred CCC---cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 392 ADN---QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 392 ~Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.++ .|++||+.... +.....+...|.+++|+|..
T Consensus 373 ~~~~~~~l~~~d~~g~~-------------------------~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRF-------------------------KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EETTEEEEEEEETTSCC-------------------------EEECCCSSSEEEEEEECCCC
T ss_pred cCCCccEEEEEECCCCc-------------------------EEEeeCCCCCCcCCcccccc
Confidence 776 79999987442 22222223579999999965
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=199.57 Aligned_cols=219 Identities=15% Similarity=0.155 Sum_probs=157.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...++.+++++.+ .++++++.+| |+||+.......... ...........+...+ .+...|.+++|+|++. +
T Consensus 36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~-~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKP-----GDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNL-T 106 (434)
T ss_dssp CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCT-----TCCTTCEEECCCCEEE-CCSSCEEEEEECTTSC-E
T ss_pred CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhccc-----ccCcccccccCccccc-cCCCcccEEEEcCCCC-E
Confidence 3468999999988 6777888888 999886532110000 0000000011222233 4567899999999998 8
Q ss_pred EE----EEeCCCeEEEEecCCC-----Cc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 249 LV----SGDCNSCIHLWEPASD-----AT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 249 l~----sg~~dg~I~lwd~~~~-----~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
|+ +|+.|+.|+|||+.+. .. .......+.+|...|.+++|+|++.++|++++.||+|++||+++.. .+
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~ 185 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KV 185 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ce
Confidence 88 7889999999998653 11 0001234667999999999999855599999999999999999874 45
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------CCCeEEEEEeCCCCCEEE-E
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------KHPVTSIEWSPHEGSTLA-V 389 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------~~~I~~v~~sp~~~~~la-s 389 (479)
.....|...|++++|+|++ .+|++|+.||.|++||++ +. ....+..| ...|.+++|+++. .+++ .
T Consensus 186 ~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~----~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~ 258 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQ----EKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVY 258 (434)
T ss_dssp EEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CC----EEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEE
T ss_pred eeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cc----ccccccCCcccCCCCceeEEEEEEecCc-eEEEEE
Confidence 5567788999999999998 899999999999999998 43 44555443 2389999999955 4443 3
Q ss_pred EeCCCc------EEEEECCCC
Q 039302 390 SSADNQ------LTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg~------I~iwdl~~~ 404 (479)
++.||. +++|+++..
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EETTCCSSSCCEEEEEECCCT
T ss_pred ccCCCccCCCCceEEEEeccC
Confidence 444543 899999875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-21 Score=183.27 Aligned_cols=263 Identities=8% Similarity=0.022 Sum_probs=171.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.....|...+.+++|+|++..+++++..++.|.+|++..... ....+..+..+. .+.+++|+
T Consensus 31 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~s 92 (343)
T 1ri6_A 31 TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-----------------ALTFAAESALPG-SLTHISTD 92 (343)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-----------------CEEEEEEEECSS-CCSEEEEC
T ss_pred eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-----------------ceeeccccccCC-CCcEEEEc
Confidence 455678899999999999955555544459999999973100 112333444444 78899999
Q ss_pred CCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCC-CCce-ee
Q 039302 243 PVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRV-GKSA-LM 318 (479)
Q Consensus 243 ~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~-~~~~-~~ 318 (479)
|++. +|++++ .++.|.+|++..+.... ....+. ....+.+++|+|+++ .+++++ .++.|.+||+.+ ++.. ..
T Consensus 93 ~dg~-~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 93 HQGQ-FVFVGSYNAGNVSVTRLEDGLPVG-VVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp TTSS-EEEEEETTTTEEEEEEEETTEEEE-EEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred CCCC-EEEEEecCCCeEEEEECCCCcccc-cccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeec
Confidence 9998 666555 48899999995221111 011222 234588999999998 555555 899999999987 4311 11
Q ss_pred --EEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---C---CCCeEEEEEeCCCCCEEEE
Q 039302 319 --SFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---H---KHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 319 --~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h---~~~I~~v~~sp~~~~~las 389 (479)
.+. .....+..++|+|++..+++++..++.|.+||+............+.. . ...+..++|+|++..++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence 222 234578899999999445566668999999999642211112333321 1 2357789999976444456
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+..++.|.+|++..... ....+.....+..+..++|+|++..+++++..++ +.+|++.
T Consensus 249 ~~~~~~i~v~d~~~~~~---------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 249 DRTASLITVFSVSEDGS---------------------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ETTTTEEEEEEECTTSC---------------------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ecCCCEEEEEEEcCCCC---------------------ceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 66899999999984210 0122222222234899999999986777765666 9999664
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-20 Score=177.35 Aligned_cols=253 Identities=7% Similarity=0.007 Sum_probs=176.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCC-cEEecCCCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP-LVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+...+ .++|+|++..+++++..++.|.+||+.. .+. ...+..+..+..+++|+|++
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL---------------------EPPKVVAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS---------------------SSCEEEEEEECSSCCCCEEECTTS
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CceeEEecccCCCCccceEECCCC
Confidence 445566 9999999976777777799999999987 344 55666666666669999999
Q ss_pred CCeEEEEeCCC---eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCcee---e
Q 039302 246 PGRLVSGDCNS---CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN-IAIWDTRVGKSAL---M 318 (479)
Q Consensus 246 ~~~l~sg~~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~-I~iwD~~~~~~~~---~ 318 (479)
. +|+++..++ .|.+||+.++.... .+ .+.....+++|+|+++.+++++..++. |.+|++....... .
T Consensus 96 ~-~l~~~~~~~~~~~i~v~d~~~~~~~~----~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 96 Q-FAVTVTGLNHPFNMQSYSFLKNKFIS----TI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp S-EEEECCCSSSSCEEEEEETTTTEEEE----EE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred C-EEEEecCCCCcccEEEEECCCCCeEE----EE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 8 888555453 89999997754322 12 233457899999999867777777788 9999998653211 1
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
...........++|+|++..+++++..++.|.+||+.+.+. ...+..+.. ...+..++|+|++..++++...++.|.+
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 22234566899999999954667777889999999987761 011666664 4667899999976334455556889999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee----cC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH----QG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h----~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
||+....... ...+..+ .. ...+..++|+|++..+++++..++ |.+|++..
T Consensus 248 ~d~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 248 FNQLSGTLSF--------------------VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EETTTTEEEE--------------------EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EECCCCceee--------------------ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 9998763100 0000000 10 012356899999987778887776 99998754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-20 Score=179.33 Aligned_cols=293 Identities=7% Similarity=0.056 Sum_probs=193.6
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcce
Q 039302 93 TAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCV 172 (479)
Q Consensus 93 ~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V 172 (479)
..++.+|+.+.+ ....|+||.+.. + ...........+...+
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~-------------------------------~-------tg~~~~~~~~~~~~~p 42 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDT-------------------------------T-------AKTLTNDGLLAATQNP 42 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEET-------------------------------T-------TTEEEEEEEEEECSCC
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcC-------------------------------C-------CCeEEEeeeeeccCCc
Confidence 356778888764 456799998821 0 0112223456677888
Q ss_pred eEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 173 NRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
..++|+|++. ++++... ++.|++|++... ..+.+..+..+...+..++|+|++. +|+
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-------------------~~~~~~~~~~~~~~p~~~a~spdg~-~l~ 101 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-------------------TAHKLNTVVAPGTPPAYVAVDEARQ-LVY 101 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETT-------------------EEEEEEEEEEESCCCSEEEEETTTT-EEE
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCC-------------------cEEEeeeeecCCCCCEEEEECCCCC-EEE
Confidence 9999999995 6666543 689999999641 1223444455667888999999998 788
Q ss_pred EEe-CCCeEEEEecCCCCccccCCC-Ccc-------cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCc-eeeE
Q 039302 251 SGD-CNSCIHLWEPASDATWNVDPN-PFI-------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV-GKS-ALMS 319 (479)
Q Consensus 251 sg~-~dg~I~lwd~~~~~~~~~~~~-~~~-------~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~-~~~-~~~~ 319 (479)
+++ .++.|.+|++...+....... ... .+...+.+++|+|+++ +++++..++.|++||+.. +.. ....
T Consensus 102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~ 180 (347)
T 3hfq_A 102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSV 180 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeee
Confidence 777 789999999964332111000 011 1234588999999999 888888899999999983 321 1112
Q ss_pred Eec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC------CCeEEEEEeCCCCCEEEEEeC
Q 039302 320 FKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK------HPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 320 ~~~-h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~------~~I~~v~~sp~~~~~las~s~ 392 (479)
+.. ....+..++|+|++..+++++..++.|.+|++.........+..+.... ..+..++|+|++..+++++..
T Consensus 181 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 181 LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 222 2346788999999944666677889999999875221011233333332 358899999976334466777
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++.|.+|++..... ...+..... ...+..++|+|++..++++...++ +.+|++.
T Consensus 261 ~~~v~v~~~~~~g~----------------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 261 YNTLAVFAVTADGH----------------------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTEEEEEEECGGGC----------------------EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEECCCCc----------------------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99999999974311 022222222 245899999999986766666655 9999663
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-20 Score=189.21 Aligned_cols=253 Identities=9% Similarity=0.112 Sum_probs=181.3
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeC--CCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC----CC
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDF--RSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP----VA 245 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~----~~ 245 (479)
+..++|+|++ ++|++++.+++|++||+ .+ .+.+.++. +......++|+| ++
T Consensus 181 ~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t---------------------~~~~~~i~-~g~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 181 VHISRMSASG-RYLLVIGRDARIDMIDLWAKE---------------------PTKVAEIK-IGIEARSVESSKFKGYED 237 (543)
T ss_dssp EEEEEECTTS-CEEEEEETTSEEEEEETTSSS---------------------CEEEEEEE-CCSEEEEEEECCSTTCTT
T ss_pred cceEEECCCC-CEEEEECCCCeEEEEECcCCC---------------------CcEEEEEe-cCCCcceEEeCCCcCCCC
Confidence 8999999999 67777788899999999 44 45566666 445689999999 99
Q ss_pred CCeEEEEe-CCCeEEEEecCCCCccccCCC-C--cc---cCC-CcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 246 PGRLVSGD-CNSCIHLWEPASDATWNVDPN-P--FI---GHA-ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 246 ~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~-~--~~---~h~-~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
. +|++++ .+++|.+||..+......... . .. -|. ..+..+.++|++..++++...++.|.+||+.+.+...
T Consensus 238 ~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 238 R-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp T-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred C-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence 8 888877 489999999877554221110 0 00 122 3789999999988788888899999999998865332
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----CCCCeEEEEEeCCCCCEEEEEe-C
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----HKHPVTSIEWSPHEGSTLAVSS-A 392 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----h~~~I~~v~~sp~~~~~las~s-~ 392 (479)
.....+...+..+.|+|++..+++++..+++|.+||+.+++ ++..+.. |.+....+ ++|+++.++++++ .
T Consensus 317 ~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 317 VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG 391 (543)
T ss_dssp EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC
Confidence 22334566788999999994456666678999999999887 7777764 65544444 5787667888876 5
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEE--c-----CCCceE
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVST--A-----ADGFNI 464 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~--~-----~dgi~i 464 (479)
|++|.+||+...... ....+.+....++ ..+..+++||+++.+.+.. + .+.|.|
T Consensus 392 d~~V~v~d~~~~~~~------------------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 392 DGSISLIGTDPKNHP------------------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp SSEEEEEECCTTTCT------------------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred CceEEEEEeCCCCCc------------------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 899999999874210 0001223332333 3578899999998555544 1 345999
Q ss_pred EeeeccC
Q 039302 465 LMPSNIQ 471 (479)
Q Consensus 465 w~~~~~~ 471 (479)
|++.+..
T Consensus 454 ~d~~~~~ 460 (543)
T 1nir_A 454 FDLKNLD 460 (543)
T ss_dssp EETTCTT
T ss_pred EECCCCC
Confidence 9988764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-20 Score=189.52 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=186.5
Q ss_pred EecCCcceeEEEEec----CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---------
Q 039302 165 KVAHQGCVNRIRAMS----QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG--------- 231 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p----~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 231 (479)
.+.+...+..++|+| ++..++++...+++|.|||..+ .+++.++..
T Consensus 217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---------------------~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---------------------LEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---------------------CCEEEEEECCEECSSSCC
T ss_pred EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---------------------cccceeecccCcccCccc
Confidence 344566789999999 9955544444689999999876 455555543
Q ss_pred -CC-CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 232 -HK-DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 232 -h~-~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
|. ..+.++.++|++..++++...++.|.+||+.+...... . ...+...+.++.|+|+++.+++++..+++|.+||
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~--~-~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV--T-SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE--E-EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee--E-EeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 22 37899999998875778888899999999977543221 1 1234566888999999995555666789999999
Q ss_pred cCCCCceeeEEec----CCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCC---CCceEEEeecCCCCeEEEEEeC
Q 039302 310 TRVGKSALMSFKA----HNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKG---GDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 310 ~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~---~~~~~~~~~~h~~~I~~v~~sp 381 (479)
+.+++ ++..+.. |......+ ++|+++.+++++. .|++|.|||+.+... ....+.++..|...+..|+++|
T Consensus 353 ~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 353 SKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp TTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred CCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 99985 5555543 55433333 5777547888886 689999999988210 1238999999999999999999
Q ss_pred CCCCEEEEEe-------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe------ecCCCCeeeEEEeC
Q 039302 382 HEGSTLAVSS-------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI------HQGQKDLKELHWHT 448 (479)
Q Consensus 382 ~~~~~las~s-------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------h~g~~~V~~v~w~p 448 (479)
++ ..|++++ .+++|.|||+.+... ..+.+.+ ..+...+..+.|+|
T Consensus 431 dg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~---------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 431 KS-SHLYVDTTFNPDARISQSVAVFDLKNLDA---------------------KYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp TC-CEEEECCTTCSSHHHHTCEEEEETTCTTS---------------------CCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred CC-CcEEEecCCCCCcccCceEEEEECCCCCC---------------------CeEEeechhhcccCCCCCceEeccCCC
Confidence 65 8888887 277999999998742 1122211 12345799999999
Q ss_pred CCCcEEEEEc----CCC-ceEEeeecc
Q 039302 449 QVPGMIVSTA----ADG-FNILMPSNI 470 (479)
Q Consensus 449 ~~~~ll~s~~----~dg-i~iw~~~~~ 470 (479)
++..+++|.. .++ |.||+..+.
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 9998887753 345 999988765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-18 Score=168.16 Aligned_cols=292 Identities=9% Similarity=0.043 Sum_probs=187.5
Q ss_pred CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCc
Q 039302 91 PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQG 170 (479)
Q Consensus 91 ~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~ 170 (479)
+...++.+||.+.+ ..+.|++|.+.. + .++... .... |..
T Consensus 11 ~~~~~~~vg~y~~~-~~~~i~~~~~d~-------------------------------~------~g~~~~-~~~~-~~~ 50 (361)
T 3scy_A 11 DSELTMLVGTYTSG-NSKGIYTFRFNE-------------------------------E------TGESLP-LSDA-EVA 50 (361)
T ss_dssp GGEEEEEEEECCSS-SCCEEEEEEEET-------------------------------T------TCCEEE-EEEE-ECS
T ss_pred CCceEEEEEeccCC-CCCCEEEEEEeC-------------------------------C------CCCEEE-eecc-cCC
Confidence 34678889999875 567899998831 0 011122 2333 778
Q ss_pred ceeEEEEecCCCcEEEEEeCC----ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 171 CVNRIRAMSQNPHICASWADT----GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+..++|+|++ .+|++++.+ |.|.+|++..... ....+.....+......+++ ++.
T Consensus 51 ~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------~~~~~~~~~~~~~~p~~~~~--dg~ 110 (361)
T 3scy_A 51 NPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKG-----------------TLHLLNTQKTMGADPCYLTT--NGK 110 (361)
T ss_dssp CCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTT-----------------EEEEEEEEECSSSCEEEEEE--CSS
T ss_pred CCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCC-----------------cEEEeeEeccCCCCcEEEEE--CCC
Confidence 88999999999 455555654 8999999876210 01233344445556777888 565
Q ss_pred CeEEEEe-CCCeEEEEecCCCCccccCCC----------CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 247 GRLVSGD-CNSCIHLWEPASDATWNVDPN----------PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 247 ~~l~sg~-~dg~I~lwd~~~~~~~~~~~~----------~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
+|++++ .++.|.+|++...+....... ....+...+.+++|+|+++.+++++..++.|.+|++.....
T Consensus 111 -~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 111 -NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp -EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred -EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 566655 688999999975443211000 01122345789999999985556666689999999886532
Q ss_pred ------e------eeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEE
Q 039302 316 ------A------LMSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEW 379 (479)
Q Consensus 316 ------~------~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~ 379 (479)
. ......+......++|+|++ .+|++++ .++.|.+||+..+.. ..+..+. .+...+..++|
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~--~~~~~~~~~~~~~~~~~~i~~ 266 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGML--DEIQTVAADTVNAQGSGDIHL 266 (361)
T ss_dssp TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEE--EEEEEEESCSSCCCCEEEEEE
T ss_pred cccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCce--EEeEEEecCCCCCCCcccEEE
Confidence 1 11123345668899999999 5555544 789999999985531 1233332 23455789999
Q ss_pred eCCCCCEEEEEeC--CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE
Q 039302 380 SPHEGSTLAVSSA--DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 380 sp~~~~~las~s~--Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~ 457 (479)
+|++ ++|++++. ++.|.+|++..... ....+........+..++|+|++..++++.
T Consensus 267 spdg-~~l~v~~~~~~~~i~v~~~~~~~g---------------------~~~~~~~~~~g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 267 SPDG-KYLYASNRLKADGVAIFKVDETNG---------------------TLTKVGYQLTGIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp CTTS-SEEEEEECSSSCEEEEEEECTTTC---------------------CEEEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred CCCC-CEEEEECCCCCCEEEEEEEcCCCC---------------------cEEEeeEecCCCCCceEEECCCCCEEEEEE
Confidence 9976 66655554 58999999973310 011222222234688999999998777776
Q ss_pred cCCC-ceEEeee
Q 039302 458 AADG-FNILMPS 468 (479)
Q Consensus 458 ~~dg-i~iw~~~ 468 (479)
..++ +.+|++.
T Consensus 325 ~~~~~v~v~~~d 336 (361)
T 3scy_A 325 RDTNVIQIFERD 336 (361)
T ss_dssp TTTTEEEEEEEC
T ss_pred CCCCCEEEEEEE
Confidence 5655 8897664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-19 Score=169.98 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=172.9
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---------ceE
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---------EGY 237 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~ 237 (479)
.+...+..+.|+|++..++++...++.|.+||... .+.+..+..+.. .+.
T Consensus 86 ~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 86 HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT---------------------GEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT---------------------CCEEEEEESCCCCCCSSCCCCEEE
T ss_pred ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC---------------------CeeEEEEecCCCccccccCCCCCc
Confidence 33456889999999977888888889999999986 444455544332 268
Q ss_pred EEEeCCCCCCeEEEEe--CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 238 AIDWNPVAPGRLVSGD--CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
+++|+|++. +|++++ .++.|.+||+.++.... .+..+...+.+++|+|+++ .+++++.++.|.+||+.+++
T Consensus 145 ~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~- 217 (353)
T 3vgz_A 145 ELVADDATN-TVYISGIGKESVIWVVDGGNIKLKT----AIQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNK- 217 (353)
T ss_dssp EEEEETTTT-EEEEEEESSSCEEEEEETTTTEEEE----EECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTE-
T ss_pred eEEECCCCC-EEEEEecCCCceEEEEcCCCCceEE----EecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCe-
Confidence 899999997 666665 47899999997754322 2222445578899999998 78888889999999999875
Q ss_pred eeeEEec----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 316 ALMSFKA----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 316 ~~~~~~~----h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
....+.. +...+..++|+|++..++++...++.|.+||+.+++ .+..+.... + ..++|+|++..++++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~-~-~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 218 ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN----ILAKVAAPE-S-LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC----EEEEEECSS-C-CCEEEETTTTEEEEEET
T ss_pred EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc----EEEEEEcCC-C-ceEEECCCCCEEEEEEC
Confidence 4444432 456788999999995555666666999999998877 666666533 2 57999997744566666
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
.++.|.+||+.... ++........+..++|+|++..++++...
T Consensus 292 ~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 292 QAGKVSVIDAKSYK-------------------------VVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEETTTTE-------------------------EEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEEEECCCCe-------------------------EEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 79999999998763 22222223468999999999877777765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-21 Score=189.86 Aligned_cols=206 Identities=17% Similarity=0.209 Sum_probs=150.6
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-----------cccCCCCcccCCCcEEEEEECCCCCcEEE----E
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-----------WNVDPNPFIGHAASVEDLQWSPTESDVFA----S 298 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-----------~~~~~~~~~~h~~~V~~l~~sp~~~~~l~----s 298 (479)
..+..|++++.+. +|++++.++ |++|+...... ..........+...|++++|+|++. +|+ +
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEec
Confidence 3578899999886 999999887 88887532100 0000011123567899999999998 777 7
Q ss_pred EeCCCcEEEEEcCCC-----C--ce---eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee
Q 039302 299 CSVDGNIAIWDTRVG-----K--SA---LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~-----~--~~---~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~ 368 (479)
|+.|++|+|||+++. + .+ +..+.+|...|++++|+|+.+.+|++|+.||+|++||+++.. .+....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~----~~~~~~ 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV----KVCATL 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE----EEEEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc----ceeecc
Confidence 888999999998754 1 11 334467899999999999855899999999999999999875 566677
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec----CC-CCeee
Q 039302 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ----GQ-KDLKE 443 (479)
Q Consensus 369 ~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~----g~-~~V~~ 443 (479)
+|...|++++|+|+ +.+|++|+.||.|++||++.... ..+..|. .+ ..|.+
T Consensus 190 ~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 190 PSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPTLQEK-----------------------KVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp CGGGCEEEEEECTT-SSCEEEEETTSCEEEECTTCCEE-----------------------EEECCCTTCCTTSCEEEEE
T ss_pred CCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccCCccc-----------------------ccccCCcccCCCCceeEEE
Confidence 78999999999996 59999999999999999982210 1111111 11 26999
Q ss_pred EEEeCCCCcEEEEEcCCC-------ceEEeeecc
Q 039302 444 LHWHTQVPGMIVSTAADG-------FNILMPSNI 470 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg-------i~iw~~~~~ 470 (479)
++|+++...+++.+..+| +.+|.+.+.
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999998765555454442 567776654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=169.47 Aligned_cols=246 Identities=11% Similarity=0.052 Sum_probs=176.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeC------CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWAD------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
......+..++++|++..++++... ++.|.+||... .+.+..+.. ...+.++
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~-~~~~~~~ 94 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---------------------LEVTQAIHN-DLKPFGA 94 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---------------------CCEEEEEEE-SSCCCSE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---------------------CeEEEEEec-CCCcceE
Confidence 3445678899999999666655433 67899999987 445555543 3357789
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCC---------CcEEEEEECCCCCcEEEEE-eCCCcEEEEE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHA---------ASVEDLQWSPTESDVFASC-SVDGNIAIWD 309 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~~l~s~-s~dg~I~iwD 309 (479)
+|+|++...++++..++.|.+||+.++..... +..+. ..+.+++|+|+++.+++++ +.++.|.+||
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR----LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEE----EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEE----EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 99999973445556679999999987654221 11111 1378999999998444444 3588999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----CCCCeEEEEEeCCCCC
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----HKHPVTSIEWSPHEGS 385 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----h~~~I~~v~~sp~~~~ 385 (479)
+.+.+ .+..+..+...+..++|+|++ .+|++++.++.|.+||+.+.+ .+..+.. +...+.+++|+|++..
T Consensus 171 ~~~~~-~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 171 GGNIK-LKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNK----ILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp TTTTE-EEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTE----EEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred CCCCc-eEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCe----EEEEEEcCCCCCCcccceEEECCCCCE
Confidence 99875 555555466668899999999 778888889999999999877 5666554 5567889999997744
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
++++...++.|.+||+.... ++...... ....++|+|++..++++...++ |.+
T Consensus 245 l~~~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRNGN-------------------------ILAKVAAP-ESLAVLFNPARNEAYVTHRQAGKVSV 298 (353)
T ss_dssp EEEEESSSSEEEEEETTTCC-------------------------EEEEEECS-SCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEEEECCCCc-------------------------EEEEEEcC-CCceEEECCCCCEEEEEECCCCeEEE
Confidence 55555556999999997763 11111111 2367999999987888876666 999
Q ss_pred Eeeec
Q 039302 465 LMPSN 469 (479)
Q Consensus 465 w~~~~ 469 (479)
|++.+
T Consensus 299 ~d~~~ 303 (353)
T 3vgz_A 299 IDAKS 303 (353)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=192.69 Aligned_cols=240 Identities=10% Similarity=0.076 Sum_probs=170.5
Q ss_pred CcceeEEEEecCCCcEEEEEeC-Cc-----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC---------
Q 039302 169 QGCVNRIRAMSQNPHICASWAD-TG-----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK--------- 233 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~-dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------- 233 (479)
...|+.++|+|+| ..|++++. +| .|++||+... +....+..+.
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g---------------------~~~~~~~~~~~~~~~~~~~ 93 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSG---------------------QTRLLVDSKVVLPGTETLS 93 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTC---------------------CEEEEECGGGTC-------
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCC---------------------ceeEccchhhccccccccc
Confidence 4568999999999 56677776 88 8999999763 2222221111
Q ss_pred ---------------CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE
Q 039302 234 ---------------DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS 298 (479)
Q Consensus 234 ---------------~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 298 (479)
..+.+++|+|++. +|++++. +.|++||+.++.... ...+..|...+.+++|+|+|+ .|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~--~~~l~~~~~~~~~~~~SPDG~-~la~ 168 (741)
T 2ecf_A 94 DEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAA--VRQLTHGEGFATDAKLSPKGG-FVSF 168 (741)
T ss_dssp -------------CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTTS--CCBCCCSSSCEEEEEECTTSS-EEEE
T ss_pred chhhhhhhhhhhccccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcce--EEEcccCCcccccccCCCCCC-EEEE
Confidence 2478999999998 8888886 999999998752000 244667788899999999999 7888
Q ss_pred EeCCCcEEEEEcCCCCceeeEEecCCCC----------------EEEEEEcCCCCcEEEEEeCCC---------------
Q 039302 299 CSVDGNIAIWDTRVGKSALMSFKAHNAD----------------VNVISWNRLASCLLASGSDDG--------------- 347 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~~~~~~~~~h~~~----------------v~~l~~~p~~~~~l~sgs~dg--------------- 347 (479)
++ ++.|++||+.++. .......+... +..++|+|++ ..|++++.|+
T Consensus 169 ~~-~~~i~~~d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 169 IR-GRNLWVIDLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp EE-TTEEEEEETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSC
T ss_pred Ee-CCcEEEEecCCCC-EEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCc
Confidence 77 5699999998864 22222222222 4779999999 7777776655
Q ss_pred ------------------eEEEEeCCC-CCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEEeC-----CCcEEEEEC
Q 039302 348 ------------------TFSIHDLRL-LKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVSSA-----DNQLTIWDL 401 (479)
Q Consensus 348 ------------------~i~iwDlr~-~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~s~-----Dg~I~iwdl 401 (479)
.|++||+.+ .. ...... .|...+.+++| |++ ..|++++. +..|++||+
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQ----TQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCC----CEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEET
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCc----eEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEEC
Confidence 889999987 65 333332 47788999999 966 76766553 568999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC---CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK---DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~---~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..... ..++..+. .. .+..++|+|++. ++++++.++ ++||.+.
T Consensus 320 ~~g~~----------------------~~~~~~~~-~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 320 ASNQQ----------------------RVLAHETS-PTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTCCE----------------------EEEEEEEC-SSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred CCCce----------------------EEEEEcCC-CCcCCcCCceEECCCCe-EEEEecCCCccEEEEEc
Confidence 87642 12222232 12 357899999997 778877777 7888664
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=168.02 Aligned_cols=243 Identities=9% Similarity=-0.039 Sum_probs=168.6
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeC-
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDC- 254 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~- 254 (479)
.|.+.+..++++++.++.|++||+.. .+.+..+..+.... +++|+|++. +|++++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~-~~~~s~dg~-~l~~~~~~ 60 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT---------------------LEILNQITLGYDFV-DTAITSDCS-NVVVTSDF 60 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT---------------------CCEEEEEECCCCEE-EEEECSSSC-EEEEEEST
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc---------------------cceeeeEEccCCcc-eEEEcCCCC-EEEEEeCC
Confidence 45566668899999999999999987 45556666666666 999999997 6665554
Q ss_pred CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCceeeEEecCCCCEEEEE
Q 039302 255 NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG---NIAIWDTRVGKSALMSFKAHNADVNVIS 331 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~~~~~~~~~~~~h~~~v~~l~ 331 (479)
++.|.+||+.++.... ..+..+..+..+++|+|+++ +++++..++ .|.+||+.+++ .+..+. .......++
T Consensus 61 ~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~~~~~~~~ 134 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKV---VAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK-FISTIP-IPYDAVGIA 134 (331)
T ss_dssp TCEEEEEECSSSSCEE---EEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE-EEEEEE-CCTTEEEEE
T ss_pred CCeEEEEECCCCceeE---EecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC-eEEEEE-CCCCccceE
Confidence 8899999998754311 23444555555599999999 666555443 89999999875 444444 345579999
Q ss_pred EcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 332 WNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 332 ~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
|+|++..+++++..++. |.+|++...................+..++|+|++..+++++..++.|.+||+.....
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~---- 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN---- 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS----
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc----
Confidence 99999667777777788 9999998644200000122234556899999997634556666799999999986631
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+.+........+..++|+|++..++++...++ |.+|++.+
T Consensus 211 ------------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 211 ------------------ITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp ------------------CEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred ------------------cceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 011222223357899999999986777665554 88888654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-19 Score=189.19 Aligned_cols=237 Identities=9% Similarity=0.061 Sum_probs=170.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCC--CcEEecCCCCceEEEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS--PLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
..|..++|+|++ ..|++++. +.|++||+.. .. ....+..|...+.+++|+|++.
T Consensus 109 ~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~---------------------~~~~~~~~l~~~~~~~~~~~~SPDG~- 164 (741)
T 2ecf_A 109 TGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQ---------------------EGKAAVRQLTHGEGFATDAKLSPKGG- 164 (741)
T ss_dssp EESCCCEECTTS-SEEEEEET-TEEEEEESSS---------------------CSTTSCCBCCCSSSCEEEEEECTTSS-
T ss_pred cCcceeEECCCC-CEEEEEeC-CcEEEEECCC---------------------CCcceEEEcccCCcccccccCCCCCC-
Confidence 458999999999 55666565 9999999986 21 2334566778899999999998
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCC----------------cEEEEEECCCCCcEEEEEeCCC--------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA----------------SVEDLQWSPTESDVFASCSVDG-------- 303 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~----------------~V~~l~~sp~~~~~l~s~s~dg-------- 303 (479)
+|++++ ++.|++||+.++....+ ...+.. .+.+++|+|+++ .|++++.|+
T Consensus 165 ~la~~~-~~~i~~~d~~~g~~~~~----~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~ 238 (741)
T 2ecf_A 165 FVSFIR-GRNLWVIDLASGRQMQL----TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKR 238 (741)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEC----CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEE
T ss_pred EEEEEe-CCcEEEEecCCCCEEEe----ccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEec
Confidence 888887 56999999977543221 111222 247899999999 777776665
Q ss_pred -------------------------cEEEEEcCC-CCceeeEEe--cCCCCEEEEEEcCCCCcEEEEEeC-----CCeEE
Q 039302 304 -------------------------NIAIWDTRV-GKSALMSFK--AHNADVNVISWNRLASCLLASGSD-----DGTFS 350 (479)
Q Consensus 304 -------------------------~I~iwD~~~-~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~sgs~-----dg~i~ 350 (479)
.|.+||+.+ ++ ...... .|...+..++| |++ ..|++++. +..|+
T Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~ 315 (741)
T 2ecf_A 239 YEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLV 315 (741)
T ss_dssp EEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEE
T ss_pred CCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEE
Confidence 789999988 65 222221 47778999999 999 66665543 56899
Q ss_pred EEeCCCCCCCCceEEEeecCCC----CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKH----PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~----~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
+||+.++. ....+..|.. .+.+++|+|++ .++++++.|+.+.||.+....
T Consensus 316 ~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~--------------------- 369 (741)
T 2ecf_A 316 EVTLASNQ----QRVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKG--------------------- 369 (741)
T ss_dssp EEETTTCC----EEEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSS---------------------
T ss_pred EEECCCCc----eEEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCC---------------------
Confidence 99999877 5555555443 45689999976 699999999999999876432
Q ss_pred CCCceEEeecCCCCeeeE-EEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 427 LPPQLLFIHQGQKDLKEL-HWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V~~v-~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
.+.....+...|..+ .|+|++..++++++.++ ++||++.
T Consensus 370 ---~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 370 ---KAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp ---CEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred ---CeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 111112223467777 59999987777777764 7899875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-19 Score=167.59 Aligned_cols=226 Identities=13% Similarity=0.121 Sum_probs=157.7
Q ss_pred EEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCC-
Q 039302 187 SWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPAS- 265 (479)
Q Consensus 187 t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~- 265 (479)
+++.++.|++||+.. .+. ..+..|...+.+++|+|++. +|++++ ++.|++||+.+
T Consensus 17 ~~~~~~~i~~~d~~~---------------------~~~-~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~ 72 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT---------------------RKM-RVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGD 72 (297)
T ss_dssp -CCCCEEEEEEETTT---------------------TEE-EEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSC
T ss_pred CCCcceeEEEEeCCC---------------------Cce-eeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCC
Confidence 456789999999976 232 34556788999999999998 888887 88999999987
Q ss_pred CCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEe--CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE
Q 039302 266 DATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCS--VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 266 ~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s--~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 342 (479)
+.... ....+ ...+.+++|+|+++ .|++++ .++.+.||.+.........+..+ ..+..++|+|++..++++
T Consensus 73 ~~~~~----~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~ 146 (297)
T 2ojh_A 73 PSPEK----VDTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYC 146 (297)
T ss_dssp CSCEE----CCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEE
T ss_pred CCceE----eccccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEE
Confidence 54422 22333 46788999999998 788887 34556666554322223344433 348999999999445558
Q ss_pred EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCCChHHHHHHhhhccccc
Q 039302 343 GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLEKDEEEEAEFKAKTREQV 421 (479)
Q Consensus 343 gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 421 (479)
++.++.++||+++.... ....+..|...+.+++|+|++ ..|+.++ .++.+.||++.....
T Consensus 147 ~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~--------------- 207 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS--------------- 207 (297)
T ss_dssp EEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS---------------
T ss_pred ECCCCceEEEEEECCCC---cceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC---------------
Confidence 88999999999754332 456677788899999999976 6555554 699999999874321
Q ss_pred CCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC----------C-ceEEeeec
Q 039302 422 NAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD----------G-FNILMPSN 469 (479)
Q Consensus 422 ~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d----------g-i~iw~~~~ 469 (479)
.+.....+...+..++|+|++..+++++..+ + |.+|++.+
T Consensus 208 --------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 208 --------SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp --------CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred --------CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 1111222224688999999997665555542 2 77777643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-19 Score=169.47 Aligned_cols=236 Identities=10% Similarity=0.036 Sum_probs=165.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-C----CCceEEEEeCCCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-H----KDEGYAIDWNPVA 245 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~s~~~ 245 (479)
.+..++|+|++..++++++.++.|.+||+.. .+.+..+.. + ...+.+++|+|++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------GETLGRIDLSTPEERVKSLFGAALSPDG 93 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTT---------------------CCEEEEEECCBTTEEEECTTCEEECTTS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CCeEeeEEcCCcccccccccceEECCCC
Confidence 5889999999977888888899999999976 344444432 1 1256789999999
Q ss_pred CCeEEEEe------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 246 PGRLVSGD------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 246 ~~~l~sg~------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
. +|++++ .++.|.+||+.++.... .+. ....+.+++|+|+++ .++++ ++.|.+||+.++
T Consensus 94 ~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~----~~~-~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 94 K-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK----AFE-APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp S-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE----EEE-CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTT
T ss_pred C-EEEEEecccccccccccccCceEEEEECCCCcEEE----EEe-CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCC
Confidence 7 788875 57999999997643321 122 234577899999998 55555 689999999987
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC-----------------------eEEEEeCCCCCCCCceEEEeecC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDG-----------------------TFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg-----------------------~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+ ....+..+.. ...+.|+|++..+++++..++ .|.+||+.+.+. ....+..+
T Consensus 165 ~-~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~~ 239 (337)
T 1pby_B 165 T-LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREVRIM 239 (337)
T ss_dssp E-EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEEEEC
T ss_pred c-Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---eEeecCCC
Confidence 5 4444443331 112378998854444443443 468999998773 23445667
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
...+.+++|+|++ .+|+++ ++.|.+||+...+ .+........+.+++|+|++
T Consensus 240 ~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg 291 (337)
T 1pby_B 240 DVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------------------------SIKRVPLPHSYYSVNVSTDG 291 (337)
T ss_dssp SSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------------------------EEEEEECSSCCCEEEECTTS
T ss_pred CCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc-------------------------CcceecCCCceeeEEECCCC
Confidence 7788999999965 777777 7999999997753 22222223468899999999
Q ss_pred CcEEEEEcCCC-ceEEeeecc
Q 039302 451 PGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 451 ~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..++++ +.++ |.+|++.+.
T Consensus 292 ~~l~~~-~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 292 STVWLG-GALGDLAAYDAETL 311 (337)
T ss_dssp CEEEEE-SBSSEEEEEETTTC
T ss_pred CEEEEE-cCCCcEEEEECcCC
Confidence 756655 5555 999987543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-19 Score=188.77 Aligned_cols=247 Identities=9% Similarity=0.066 Sum_probs=163.6
Q ss_pred EecCCc---ceeEEEEecCCCcEEEEEeCC---------ceEEEEeCCCCcccccccccccCCCCCccccCCC--cEEec
Q 039302 165 KVAHQG---CVNRIRAMSQNPHICASWADT---------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP--LVKFG 230 (479)
Q Consensus 165 ~~~H~~---~V~~v~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 230 (479)
+..|.. .|..++|+|++ ..||+++.+ +.|++||+.. .+. +....
T Consensus 53 ~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~---------------------~~~~~l~~~~ 110 (723)
T 1xfd_A 53 IEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPH---------------------GDPQSLDPPE 110 (723)
T ss_dssp ECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSS---------------------CCCEECCCTT
T ss_pred eccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCC---------------------CceEeccCCc
Confidence 344544 49999999999 566666653 7899999987 222 12223
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC------------------cEEEEEECCCC
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA------------------SVEDLQWSPTE 292 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~------------------~V~~l~~sp~~ 292 (479)
+|...+..++|||++. +|+.++. +.|++|++.++....+ ...+.. .+.+++|+|++
T Consensus 111 ~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~----~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg 184 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRV----VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (723)
T ss_dssp CCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEE----ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred cccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEE----ecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence 4555688999999998 8998885 8999999987544221 111122 33789999999
Q ss_pred CcEEEEEeCCC----------------------------------cEEEEEcCCCCceeeEEecC------CCCEEEEEE
Q 039302 293 SDVFASCSVDG----------------------------------NIAIWDTRVGKSALMSFKAH------NADVNVISW 332 (479)
Q Consensus 293 ~~~l~s~s~dg----------------------------------~I~iwD~~~~~~~~~~~~~h------~~~v~~l~~ 332 (479)
+ .|++++.++ .|++||+.+++ ....+..+ ...+..++|
T Consensus 185 ~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 262 (723)
T 1xfd_A 185 T-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKW 262 (723)
T ss_dssp S-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEE
T ss_pred C-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEE
Confidence 9 777776543 79999998875 33444433 567899999
Q ss_pred cCCCCcEEEEEeC----CCeEEEEeCCCCCCCCceEEEeec-CCCCeE----EEEEeCCCCCEEEE-EeCCC------cE
Q 039302 333 NRLASCLLASGSD----DGTFSIHDLRLLKGGDSVVAHFEY-HKHPVT----SIEWSPHEGSTLAV-SSADN------QL 396 (479)
Q Consensus 333 ~p~~~~~l~sgs~----dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~----~v~~sp~~~~~las-~s~Dg------~I 396 (479)
+|++ .+|++.+. +..|++||+.+++ ....+.. |...+. .++|+|++..++++ +..++ .|
T Consensus 263 SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 337 (723)
T 1xfd_A 263 ATST-KVAVTWLNRAQNVSILTLCDATTGV----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (723)
T ss_dssp SSSS-EEEEEEEETTSCEEEEEEEETTTCC----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred eCCC-eEEEEEEcCCCCeEEEEEEeCCCCc----ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEE
Confidence 9999 67766643 3579999998876 4444433 444443 88999977444444 55677 46
Q ss_pred EEEEC-CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee-EEEeCCCCcEEEEEcCC--C-ceEEeee
Q 039302 397 TIWDL-SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE-LHWHTQVPGMIVSTAAD--G-FNILMPS 468 (479)
Q Consensus 397 ~iwdl-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~-v~w~p~~~~ll~s~~~d--g-i~iw~~~ 468 (479)
.+||+ ..... .....+ ..++..+.. ++|+|++..+++++..+ + +++|++.
T Consensus 338 ~~~d~~~~~~~-------------------~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 338 TVSSSQPNSSN-------------------DNIQSI---TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEECSSCCSSS-------------------CCCCBS---CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEEeccCCCCc-------------------cceeEe---ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 66663 32210 000111 122344554 69999998776666664 4 8899875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=183.57 Aligned_cols=261 Identities=10% Similarity=0.085 Sum_probs=171.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCC-----CcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRS-----HLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
.+..|.+.+..++|+|++ ..||+ +.++.|++|++.. ........ ........+.+ ....+...+.+
T Consensus 115 ~l~~~~~~~~~~~~SpdG-~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~-----~~~~~~~~g~~--~~~ee~~~~~~ 185 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVG-DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTI-----DGTETLVYGQA--VHQREFGIEKG 185 (706)
T ss_dssp EEECCTTCCTTCEECTTS-SEEEE-EETTEEEEEECBCTTSCCCCCEESCS-----CCBTTEEESSC--CGGGCTTCCCS
T ss_pred EccCCcccccCCcCCCCC-CEEEE-EECCeEEEEecCcccccCCCcEEecc-----CCCCCeEcccc--hhhhhcCCCce
Confidence 456678889999999999 55666 4679999999975 21000000 00000000000 01111223589
Q ss_pred EEeCCCCCCeEEEEe---------------------------------CCCeEEEEecCCCCccccCCCCcccCCCcEEE
Q 039302 239 IDWNPVAPGRLVSGD---------------------------------CNSCIHLWEPASDATWNVDPNPFIGHAASVED 285 (479)
Q Consensus 239 l~~s~~~~~~l~sg~---------------------------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~ 285 (479)
++|+|++. +|++++ .+..|++||+.++..... .....|...+.+
T Consensus 186 ~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~ 262 (706)
T 2z3z_A 186 TFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL--QTGEPKEKFLTN 262 (706)
T ss_dssp EEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC--CCCSCTTCEEEE
T ss_pred EEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee--ccCCCCceeEee
Confidence 99999998 888887 446899999977543221 222356778999
Q ss_pred EEECCCCCcEEEEEeCCC-----cEEEEEcCCCCceeeEE-ecCCC---CEEEEEEcC--CCCcEEEEEeCCCeEEEEeC
Q 039302 286 LQWSPTESDVFASCSVDG-----NIAIWDTRVGKSALMSF-KAHNA---DVNVISWNR--LASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 286 l~~sp~~~~~l~s~s~dg-----~I~iwD~~~~~~~~~~~-~~h~~---~v~~l~~~p--~~~~~l~sgs~dg~i~iwDl 354 (479)
++|+|+++ .|++++.++ .|.+||+.+++...... ..+.. .+..++|+| ++ .+|++++.+|.++||++
T Consensus 263 ~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~ 340 (706)
T 2z3z_A 263 LSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLY 340 (706)
T ss_dssp EEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEE
T ss_pred EEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEE
Confidence 99999999 777777665 89999999873222222 22222 246789999 88 79999999999999988
Q ss_pred C-CCCCCCceEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCC----cEEEEECCCCCChHHHHHHhhhcccccCCCCCCC
Q 039302 355 R-LLKGGDSVVAHFEYHKHPVTS-IEWSPHEGSTLAVSSADN----QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP 428 (479)
Q Consensus 355 r-~~~~~~~~~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p 428 (479)
. ... .+..+..|...+.+ ++|+|++..++++++.++ .|..||+.....
T Consensus 341 ~~~~~----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---------------------- 394 (706)
T 2z3z_A 341 DTTGR----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT---------------------- 394 (706)
T ss_dssp ETTSC----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC----------------------
T ss_pred ECCCC----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc----------------------
Confidence 6 333 67778888888887 799997644555555555 566666654421
Q ss_pred CceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC----ceEEeee
Q 039302 429 PQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG----FNILMPS 468 (479)
Q Consensus 429 ~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg----i~iw~~~ 468 (479)
.. ..| ...+.+++|+|++..++++++... +.+|++.
T Consensus 395 -~~-l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 395 -KD-LTP--ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp -EE-SCC--SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred -ee-ccC--CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 11 112 246889999999987777666543 7788754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=167.80 Aligned_cols=241 Identities=9% Similarity=0.052 Sum_probs=159.5
Q ss_pred CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC-CeEE
Q 039302 181 NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN-SCIH 259 (479)
Q Consensus 181 ~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d-g~I~ 259 (479)
+..++++++.++.|++|++.... ....+..+ .|...+.+++|+|++. +|++++.+ +.|.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~------------------~~~~~~~~-~~~~~~~~~~~spdg~-~l~~~~~~~~~v~ 63 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEG------------------ALTLTQVV-DVPGQVQPMVVSPDKR-YLYVGVRPEFRVL 63 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTS------------------CEEEEEEE-ECSSCCCCEEECTTSS-EEEEEETTTTEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCC------------------cEEEeeeE-ecCCCCceEEECCCCC-EEEEeecCCCeEE
Confidence 33567777889999999996410 01222333 4667889999999998 88888876 9999
Q ss_pred EEecC--CCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ceeeEEecCCCCEEEEEEcCC
Q 039302 260 LWEPA--SDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWNRL 335 (479)
Q Consensus 260 lwd~~--~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~~~~~~~h~~~v~~l~~~p~ 335 (479)
+|++. ++.... ...+..+ ..+.+++|+|+++.+++++..++.|.+||+..+. .....+. ....+.+++|+|+
T Consensus 64 ~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d 139 (343)
T 1ri6_A 64 AYRIAPDDGALTF--AAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPD 139 (343)
T ss_dssp EEEECTTTCCEEE--EEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTT
T ss_pred EEEecCCCCceee--ccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCC
Confidence 99997 332211 1122223 3788999999999444555568999999995321 1233333 3446899999999
Q ss_pred CCcEEEEEe-CCCeEEEEeCCCCCCCCceEE--Eeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHH
Q 039302 336 ASCLLASGS-DDGTFSIHDLRLLKGGDSVVA--HFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEA 411 (479)
Q Consensus 336 ~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~--~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~ 411 (479)
+ .+|++++ .++.|++||+..... ...+. .+.. ....+..++|+|++..+++++..++.|.+|++.....
T Consensus 140 g-~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g----- 212 (343)
T 1ri6_A 140 N-RTLWVPALKQDRICLFTVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG----- 212 (343)
T ss_dssp S-SEEEEEEGGGTEEEEEEECTTSC-EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-----
T ss_pred C-CEEEEecCCCCEEEEEEecCCCc-eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----
Confidence 9 5555555 899999999987221 00111 2333 3457889999997633555666899999999964210
Q ss_pred HHhhhcccccCCCCCCCCceEEe-------ecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 412 EFKAKTREQVNAPEDLPPQLLFI-------HQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 412 ~~~~~~~~~~~~~~~~p~~l~~~-------h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
....... +.+...+..++|+|++..+++++..++ |.+|++.
T Consensus 213 ----------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 213 ----------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp ----------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ----------------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 0011111 112235778999999987877886666 9999986
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=188.49 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=167.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---ceEEEEeCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---EGYAIDWNPVAP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~ 246 (479)
..+..++|+|++. ++++ +.||+|++||+.+ ++....+.+|.. .+.+++|||++.
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~---------------------g~~~~~~~~~~~~~~~v~~~~~SpDg~ 73 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVET---------------------NTSTVLIEGKKIESLRAIRYEISPDRE 73 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGG---------------------CCCEEEECTTTTTTTTCSEEEECTTSS
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCC---------------------CcEEEEeccccccccccceEEECCCCC
Confidence 3467889999994 6666 7899999999987 455566666654 499999999998
Q ss_pred CeEEEEeCC---------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 247 GRLVSGDCN---------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 247 ~~l~sg~~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+|++++.+ +.|.+||+.++.... .....+|...+..++|+|+|+ .||.++. +.|++||+.++. ..
T Consensus 74 -~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~-~~ 147 (723)
T 1xfd_A 74 -YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--LDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQ-AI 147 (723)
T ss_dssp -EEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--CCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSC-CE
T ss_pred -EEEEEecCccceeecceeeEEEEECCCCceEe--ccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCc-eE
Confidence 89998764 788999998765422 223345666688999999998 7787775 899999998875 33
Q ss_pred eEEecCCCC------------------EEEEEEcCCCCcEEEEEeCCC--------------------------------
Q 039302 318 MSFKAHNAD------------------VNVISWNRLASCLLASGSDDG-------------------------------- 347 (479)
Q Consensus 318 ~~~~~h~~~------------------v~~l~~~p~~~~~l~sgs~dg-------------------------------- 347 (479)
.....+... +.+++|+|++ ..|++++.++
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 333333333 3789999999 7777776543
Q ss_pred --eEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCCCEEEEEeC----CCcEEEEECCCCCChHHHHHHhh
Q 039302 348 --TFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEGSTLAVSSA----DNQLTIWDLSLEKDEEEEAEFKA 415 (479)
Q Consensus 348 --~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~~~las~s~----Dg~I~iwdl~~~~~~~~~~~~~~ 415 (479)
.|++||+.+.. ....+..+ ...+.+++|+|++ .+|++.+. +..|.+||+..+..
T Consensus 227 ~~~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~--------- 292 (723)
T 1xfd_A 227 SISLHVIGLNGPT----HDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVC--------- 292 (723)
T ss_dssp EEEEEEEESSSSC----CCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCE---------
T ss_pred eeEEEEEECCCCc----eeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcc---------
Confidence 79999998776 34455543 5679999999966 77766643 35799999987631
Q ss_pred hcccccCCCCCCCCceEEeecCCCCe----eeEEEeCCCCcEEEE-EcCCC
Q 039302 416 KTREQVNAPEDLPPQLLFIHQGQKDL----KELHWHTQVPGMIVS-TAADG 461 (479)
Q Consensus 416 ~~~~~~~~~~~~p~~l~~~h~g~~~V----~~v~w~p~~~~ll~s-~~~dg 461 (479)
..++..+. ...+ ..++|+|++..+++. +..++
T Consensus 293 -------------~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 293 -------------TKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp -------------EEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred -------------eEEEEecc-CCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 02222221 1223 388999999877765 54554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=179.69 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=163.7
Q ss_pred CcceeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAP 246 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~ 246 (479)
..+|++++|+|+| ..||+++. +|+++||++.. +. ...+..|. ..+..++|+|+ .
T Consensus 21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~---------------------g~-~~~lt~~~~~~~~~~~~spd-~ 76 (582)
T 3o4h_A 21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDG---------------------GE-TVKLNREPINSVLDPHYGVG-R 76 (582)
T ss_dssp HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEET---------------------TE-EEECCSSCCSEECEECTTCS-E
T ss_pred ccchheeecCCCC-CeEEEEEccCCceeEEEEcC---------------------CC-cEeeecccccccccccCCCC-e
Confidence 4579999999999 55566565 99999999743 22 34455555 58999999998 5
Q ss_pred CeEEEEeC---CCeEEEEecCC--CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 247 GRLVSGDC---NSCIHLWEPAS--DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 247 ~~l~sg~~---dg~I~lwd~~~--~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++++++. +....||.+.. .+.... .... ..+...+|+|+++..+++.+.++.+.|||+.+++ . ..+.
T Consensus 77 -~l~~~~~~~g~~~~~l~~~~~~~~g~~~~-l~~~----~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~-~~l~ 148 (582)
T 3o4h_A 77 -VILVRDVSKGAEQHALFKVNTSRPGEEQR-LEAV----KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-L-RELA 148 (582)
T ss_dssp -EEEEEECSTTSCCEEEEEEETTSTTCCEE-CTTS----CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-E-EEEE
T ss_pred -EEEEeccCCCCcceEEEEEeccCCCcccc-ccCC----CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-E-EEee
Confidence 7887775 45566765543 222111 1111 1234668888886555555555556699998874 2 2333
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC--c
Q 039302 322 AHNADVNVISWNRLASCLLASGSDD----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN--Q 395 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~d----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg--~ 395 (479)
.+.. .+++|+|+| .+|++++.+ +.|++||+.++. ...+..|...+.+++|+|++ ..|+++..++ .
T Consensus 149 ~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 149 RLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGM-KVTAGLETAREAR 219 (582)
T ss_dssp EESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEE
T ss_pred cCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCC-CEEEEccCCCeeE
Confidence 3333 889999999 888877777 789999998776 34677888999999999965 8888888888 8
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEE--------EeCCCCcEEEEEcCCC-ceEEe
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH--------WHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~--------w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
|++||+.... ......+...+..++ |+|++ .++++++.++ +++|.
T Consensus 220 i~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 220 LVTVDPRDGS-------------------------VEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEECTTTCC-------------------------EEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCc-------------------------EEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEE
Confidence 9999998763 111112223466666 99999 7888888888 89998
Q ss_pred e
Q 039302 467 P 467 (479)
Q Consensus 467 ~ 467 (479)
+
T Consensus 274 ~ 274 (582)
T 3o4h_A 274 D 274 (582)
T ss_dssp T
T ss_pred E
Confidence 7
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-18 Score=178.62 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=168.2
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.+++|+|+ ..++++. ++.|++||+.. .+. ..+..+...+.+++|+|++. +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~---------------------~~~-~~l~~~~~~~~~~~~SpdG~-~ 134 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT--QGGLVGFDMLA---------------------RKV-TYLFDTNEETASLDFSPVGD-R 134 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE--TTEEEEEETTT---------------------TEE-EEEECCTTCCTTCEECTTSS-E
T ss_pred ccCceeEEECCC-CeEEEEE--CCEEEEEECCC---------------------Cce-EEccCCcccccCCcCCCCCC-E
Confidence 357999999999 4666653 49999999976 222 33445667788999999998 8
Q ss_pred EEEEeCCCeEEEEecCC-----CCccccCCCCcccCCC--------------cEEEEEECCCCCcEEEEEe---------
Q 039302 249 LVSGDCNSCIHLWEPAS-----DATWNVDPNPFIGHAA--------------SVEDLQWSPTESDVFASCS--------- 300 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~-----~~~~~~~~~~~~~h~~--------------~V~~l~~sp~~~~~l~s~s--------- 300 (479)
|+++ .++.|++|++.+ +....+ ...+.. .+.++.|+|+++ .|++++
T Consensus 135 la~~-~~~~i~v~~~~~~~~~~g~~~~~----~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~ 208 (706)
T 2z3z_A 135 VAYV-RNHNLYIARGGKLGEGMSRAIAV----TIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPT 208 (706)
T ss_dssp EEEE-ETTEEEEEECBCTTSCCCCCEES----CSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCE
T ss_pred EEEE-ECCeEEEEecCcccccCCCcEEe----ccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceE
Confidence 8885 589999999987 543221 111222 258899999999 777776
Q ss_pred ------------------------CCCcEEEEEcCCCCceeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCC-----eEE
Q 039302 301 ------------------------VDGNIAIWDTRVGKSALMSF-KAHNADVNVISWNRLASCLLASGSDDG-----TFS 350 (479)
Q Consensus 301 ------------------------~dg~I~iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg-----~i~ 350 (479)
.+..|.+||+.++....... ..|...+.+++|+|++ ..|++++.++ .|+
T Consensus 209 ~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~ 287 (706)
T 2z3z_A 209 PIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVN 287 (706)
T ss_dssp EEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEE
T ss_pred EeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEE
Confidence 44679999998875211111 2566789999999999 7777777665 899
Q ss_pred EEeCCCCCCCCceEEEee-cCCC---CeEEEEEeC--CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 351 IHDLRLLKGGDSVVAHFE-YHKH---PVTSIEWSP--HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~-~h~~---~I~~v~~sp--~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
+||+.++.. ...... .+.. .+.++.|+| ++ .+|++++.|+.++||.+.....
T Consensus 288 ~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~------------------ 345 (706)
T 2z3z_A 288 AYDAETGRF---VRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR------------------ 345 (706)
T ss_dssp EEETTTCCE---EEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC------------------
T ss_pred EEECCCCce---eeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC------------------
Confidence 999998731 222221 2222 347789999 76 7899999999999998863211
Q ss_pred CCCCCceEEeecCCCCeee-EEEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 425 EDLPPQLLFIHQGQKDLKE-LHWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 425 ~~~p~~l~~~h~g~~~V~~-v~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
.+.....+...+.. ++|+|++..+++++..++ +.||.+.
T Consensus 346 -----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 346 -----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp -----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred -----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 12222233345766 899999987877777765 5777653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=184.25 Aligned_cols=243 Identities=10% Similarity=-0.001 Sum_probs=175.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC-CCCCCeE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN-PVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~~l 249 (479)
.+..++|+|++. .||.+ .++.|++|++... .+.... .. .......+..|...+.+++|+ |++. +|
T Consensus 246 ~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~~--~l~~l~---~~------~~~~~~~~~~~~~~v~~~~~S~pdG~-~l 311 (1045)
T 1k32_A 246 DYYPRHLNTDGR-RILFS-KGGSIYIFNPDTE--KIEKIE---IG------DLESPEDRIISIPSKFAEDFSPLDGD-LI 311 (1045)
T ss_dssp SSCEEEEEESSS-CEEEE-ETTEEEEECTTTC--CEEECC---CC------CCCBCCSEEEECGGGGEEEEEECGGG-CE
T ss_pred CcceeeEcCCCC-EEEEE-eCCEEEEecCCce--Eeeeec---cC------cccccccccccccccceeeecCCCCC-EE
Confidence 477889999995 45554 4899999998331 000000 00 000000111245578999999 9998 88
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCC-cEEEEEECCCCCcEEEEEeCCCcEE-EEEcCCCCceeeEEecCCCCE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAA-SVEDLQWSPTESDVFASCSVDGNIA-IWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~l~s~s~dg~I~-iwD~~~~~~~~~~~~~h~~~v 327 (479)
++++ ++.|.+|++..+.. ..+..|.. .+.+++|+ +++ .|++++.++.|. +||+..+. ...+..|...+
T Consensus 312 a~~~-~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~ 381 (1045)
T 1k32_A 312 AFVS-RGQAFIQDVSGTYV-----LKVPEPLRIRYVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGK--AEKFEENLGNV 381 (1045)
T ss_dssp EEEE-TTEEEEECTTSSBE-----EECSCCSCEEEEEECSS-SEE-EEEEEETTEEEEEEEETTTCC--EEECCCCCCSE
T ss_pred EEEE-cCEEEEEcCCCCce-----EEccCCCcceEEeeeEc-CCC-eEEEEECCCceEEEEECCCCC--ceEecCCccce
Confidence 8887 88999999876432 22455666 89999999 887 788888888888 99998764 33444778899
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC----------cEE
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN----------QLT 397 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg----------~I~ 397 (479)
..++|+|++ .+|++++.++.|++||+.++. ....+..|...+.+++|+|++ .+|++++.++ .|+
T Consensus 382 ~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~----~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~ 455 (1045)
T 1k32_A 382 FAMGVDRNG-KFAVVANDRFEIMTVDLETGK----PTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIH 455 (1045)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEE
T ss_pred eeeEECCCC-CEEEEECCCCeEEEEECCCCc----eEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEE
Confidence 999999999 899999999999999999877 666676899999999999965 7777776644 899
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+||+.... +.....+...+..++|+|++..+++.+..++..+|...
T Consensus 456 l~d~~~g~-------------------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 456 VYDMEGRK-------------------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEETTTTE-------------------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EEECCCCc-------------------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99998652 12222223458889999999866655555556777644
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=159.03 Aligned_cols=231 Identities=11% Similarity=0.015 Sum_probs=157.7
Q ss_pred EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCCeEEEEe
Q 039302 175 IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l~sg~ 253 (479)
+++.+.+ .++++++.++.|++||+.+ .+.+..+..+. ..+..++|+|++...++++.
T Consensus 5 ~~~~~~~-~~~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 5 PALKAGH-EYMIVTNYPNNLHVVDVAS---------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 62 (349)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTT---------------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccccCCC-EEEEEeCCCCeEEEEECCC---------------------CcEEEEEecCCCCCCceeEECCCCCEEEEEeC
Confidence 3556655 7888999999999999986 44455554433 25779999999972345666
Q ss_pred CCCeEEEEecCCCCccccCCCCcc-cC-----CCcEEEEEECCCCCcEEEEEeCC------------CcEEEEEcCCCCc
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFI-GH-----AASVEDLQWSPTESDVFASCSVD------------GNIAIWDTRVGKS 315 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~-~h-----~~~V~~l~~sp~~~~~l~s~s~d------------g~I~iwD~~~~~~ 315 (479)
.++.|.+||+.++.... .+. .+ ...+.+++|+|+++ .+++++.+ +.|.+||+.+++.
T Consensus 63 ~~~~i~~~d~~t~~~~~----~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTF----HANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp TTTEEEEEETTTTEEEE----EEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred CCCcEEEEeCCCCcEEE----EEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 78999999997754321 111 11 23377899999999 67766654 8999999987431
Q ss_pred --eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-----------------------
Q 039302 316 --ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH----------------------- 370 (479)
Q Consensus 316 --~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h----------------------- 370 (479)
.+..+. +...+.+++|+|++ .+++ ++. .|.+||+.+++ .+..+..+
T Consensus 138 ~~~~~~~~-~~~~~~~~~~s~dg-~l~~-~~~--~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 138 AKPVRTFP-MPRQVYLMRAADDG-SLYV-AGP--DIYKMDVKTGK----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp BCCSEEEE-CCSSCCCEEECTTS-CEEE-ESS--SEEEECTTTCC----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred cceeeecc-CCCcccceeECCCC-cEEE-ccC--cEEEEeCCCCc----eeccccccccCCccccCccceeeecCCCcce
Confidence 222333 34468899999999 5444 443 49999998766 34443322
Q ss_pred ---------------------------------------------CCCeEEEEEeC-CCCCEEEEEeCCCcEEEEECCCC
Q 039302 371 ---------------------------------------------KHPVTSIEWSP-HEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 371 ---------------------------------------------~~~I~~v~~sp-~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
...+.+++|+| ++ .+|+++ ++.|.+||+...
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTT
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccC
Confidence 12455777888 66 677777 889999999876
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+ ++........+.+++|+|++..++++ +.++ |.+|++.+.
T Consensus 286 ~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 286 K-------------------------LIKAANLDHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTL 326 (349)
T ss_dssp E-------------------------EEEEEECSSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTT
T ss_pred e-------------------------EEEEEcCCCCccceEECCCCCEEEEe-cCCCeEEEEecccc
Confidence 3 22222222457899999999767664 4445 999998653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=153.52 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=149.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---------CCCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---------GHKD 234 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~ 234 (479)
....|...+..++|+|++..++++...++.|.+|++..... ...+..+. .+..
T Consensus 80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~------------------~~~~~~~~~~~~~p~~~~~~~ 141 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA------------------LTLTDTVQHSGHGPRPEQDGS 141 (347)
T ss_dssp EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC------------------EEEEEEEECCCCCSSTTCSSC
T ss_pred eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC------------------eeecceeecCCCCCCccccCC
Confidence 44567888999999999965655555789999999964110 01111111 1233
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV- 312 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~- 312 (479)
.+.+++|+|++. .++++..++.|.+|++...+.... ...+.. ....+..++|+|+++.+++++..++.|.+|++..
T Consensus 142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSE-QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEE-eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 588999999998 888888899999999983332211 011111 2336788999999985566677889999999885
Q ss_pred -CCc-eeeEEecCC------CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 313 -GKS-ALMSFKAHN------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 313 -~~~-~~~~~~~h~------~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
+.. .+..+.... ..+..++|+|++..+++++..++.|.+||+..... ...+..+..+...+..++|+|++
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~spdg- 297 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-LTLIQQISTEGDFPRDFDLDPTE- 297 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC-EEEEEEEECSSSCCCEEEECTTS-
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc-EEEeEEEecCCCCcCeEEECCCC-
Confidence 221 122232222 34889999999944557777899999999973221 12566667677778999999966
Q ss_pred CEEEEEeC-CCcEEEEECCC
Q 039302 385 STLAVSSA-DNQLTIWDLSL 403 (479)
Q Consensus 385 ~~las~s~-Dg~I~iwdl~~ 403 (479)
.+|++++. ++.|.+|++..
T Consensus 298 ~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp SEEEEEETTTTEEEEEEECT
T ss_pred CEEEEEEcCCCcEEEEEEeC
Confidence 66666665 58999996654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=180.32 Aligned_cols=245 Identities=14% Similarity=0.099 Sum_probs=181.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.+.++.|+++ .++++++.+|.+.||.+.. .......+..|. .+..++|+|
T Consensus 198 ~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~--------------------~g~~~~~l~~~~-~~~~~~~Sp 254 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDL--------------------DGKDLRKHTSFT-DYYPRHLNT 254 (1045)
T ss_dssp EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEET--------------------TSCSCEECCCCC-SSCEEEEEE
T ss_pred ECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeC--------------------CCCcceEecCCC-CcceeeEcC
Confidence 45799999999999987 5777888899999998765 133445555555 467789999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCC------CCcccCCCcEEEEEEC-CCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDP------NPFIGHAASVEDLQWS-PTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~------~~~~~h~~~V~~l~~s-p~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++. .|+++. ++.|++|++.......... .....|...+.+++|+ |+++ .+++++ ++.|.+|++..+.
T Consensus 255 DG~-~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~-- 328 (1045)
T 1k32_A 255 DGR-RILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTY-- 328 (1045)
T ss_dssp SSS-CEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSB--
T ss_pred CCC-EEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCc--
Confidence 998 888875 8999999984322110000 0011245578999999 9998 677776 8899999998764
Q ss_pred eeEEecCCC-CEEEEEEcCCCCcEEEEEeCCCeEE-EEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 317 LMSFKAHNA-DVNVISWNRLASCLLASGSDDGTFS-IHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 317 ~~~~~~h~~-~v~~l~~~p~~~~~l~sgs~dg~i~-iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
...+..|.. .+..++|+ ++ ..|++++.++.+. +||+.... ...+..|...+..++|+|++ .+|++++.++
T Consensus 329 ~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~ 400 (1045)
T 1k32_A 329 VLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNG-KFAVVANDRF 400 (1045)
T ss_dssp EEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTS-SEEEEEETTS
T ss_pred eEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCC-----ceEecCCccceeeeEECCCC-CEEEEECCCC
Confidence 344566777 89999999 87 7888888888888 99988654 34455788899999999965 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC----------CceE
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD----------GFNI 464 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d----------gi~i 464 (479)
.|++||+..+.. ......+...|..++|+|++..+++++..+ .|.+
T Consensus 401 ~v~~~d~~tg~~------------------------~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 401 EIMTVDLETGKP------------------------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EEEEEETTTCCE------------------------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred eEEEEECCCCce------------------------EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 999999987631 111112234689999999998666655543 3888
Q ss_pred Eeeec
Q 039302 465 LMPSN 469 (479)
Q Consensus 465 w~~~~ 469 (479)
|++..
T Consensus 457 ~d~~~ 461 (1045)
T 1k32_A 457 YDMEG 461 (1045)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 87643
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-17 Score=172.73 Aligned_cols=236 Identities=16% Similarity=0.162 Sum_probs=156.2
Q ss_pred ceeEEEEecCCCcEEEEEeC---------CceEEEEeCCCCcccccccccccCCCCCccccCCCc--EEecCCCCceEEE
Q 039302 171 CVNRIRAMSQNPHICASWAD---------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL--VKFGGHKDEGYAI 239 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~---------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l 239 (479)
.|.+++|+|+| +.||+++. ++.|++||+... +.+ ..+ ...+..+
T Consensus 61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g---------------------~~~~~~~l---~~~~~~~ 115 (719)
T 1z68_A 61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNG---------------------EFVRGNEL---PRPIQYL 115 (719)
T ss_dssp TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTT---------------------EECCSSCC---CSSBCCE
T ss_pred ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCC---------------------ccccceec---Ccccccc
Confidence 39999999999 56666555 689999999872 110 111 2458889
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE-----------------EEEEECCCCCcEEEEEeCC
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV-----------------EDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V-----------------~~l~~sp~~~~~l~s~s~d 302 (479)
+|||+|+ .|+.+. ++.|++|++.++....+ ...++...| .+++|+|+|+ .|++++.|
T Consensus 116 ~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l---~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d 189 (719)
T 1z68_A 116 CWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQI---TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFN 189 (719)
T ss_dssp EECSSTT-CEEEEE-TTEEEEESSTTSCCEEC---CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEE
T ss_pred eECCCCC-EEEEEE-CCeEEEEeCCCCCcEEE---ecCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEEC
Confidence 9999998 888886 78999999977544221 112222222 4899999999 78887755
Q ss_pred C----------------------------------cEEEEEcCCCCce----e---eEEecCCCCEEEEEEcCCCCcEEE
Q 039302 303 G----------------------------------NIAIWDTRVGKSA----L---MSFKAHNADVNVISWNRLASCLLA 341 (479)
Q Consensus 303 g----------------------------------~I~iwD~~~~~~~----~---~~~~~h~~~v~~l~~~p~~~~~l~ 341 (479)
. .|++||+.++... + ..+..|...+..++|+|++ .+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~ 268 (719)
T 1z68_A 190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCL 268 (719)
T ss_dssp CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEE
T ss_pred CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEE
Confidence 2 7889999876421 0 1123577789999999997 7777
Q ss_pred EEeCC----CeEEEEe----CCCCCCCCceEEEe----ecCCCCeE-----EEEEeCCCCCEEE-EEeCCCc--EEEEEC
Q 039302 342 SGSDD----GTFSIHD----LRLLKGGDSVVAHF----EYHKHPVT-----SIEWSPHEGSTLA-VSSADNQ--LTIWDL 401 (479)
Q Consensus 342 sgs~d----g~i~iwD----lr~~~~~~~~~~~~----~~h~~~I~-----~v~~sp~~~~~la-s~s~Dg~--I~iwdl 401 (479)
+.... ..|.+|| +.+++. ...+ ..|...+. .+.|+|++..+++ ++..++. |.+||+
T Consensus 269 ~~~~~~~~~~~l~~~d~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 269 QWLKRVQNVSVLSICDFREDWQTWDC----PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEEESSTTEEEEEEEEECSSSSSEEC----CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred EEeccccCeEEEEEEcccCCCCCCce----EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 75433 2488899 766552 2222 46777776 8999997744444 4545664 555665
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC----CC-ceEEeee
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA----DG-FNILMPS 468 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~----dg-i~iw~~~ 468 (479)
.... ......+...|..+.+. ++..+++++.. ++ .++|.+.
T Consensus 345 ~~~~-------------------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 345 TVEN-------------------------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CSTT-------------------------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCCc-------------------------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 4432 11112233457777777 77667777665 34 8888875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=166.14 Aligned_cols=199 Identities=9% Similarity=0.007 Sum_probs=145.0
Q ss_pred EEecCC-cceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 164 RKVAHQ-GCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 164 ~~~~H~-~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
++..|. ..|..+.|+|+ .++++++. +....||.+.... .+... .+..+. .+...
T Consensus 58 ~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~------------------~g~~~-~l~~~~-~~~~~ 115 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSR------------------PGEEQ-RLEAVK-PMRIL 115 (582)
T ss_dssp ECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTS------------------TTCCE-ECTTSC-SBEEE
T ss_pred eeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccC------------------CCccc-cccCCC-Cceee
Confidence 445555 68999999998 57777665 4555666554300 01111 232222 34466
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCc
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----GNIAIWDTRVGKS 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~I~iwD~~~~~~ 315 (479)
+|+|++.+.+++.+.++.+.+||+.++.... +..+.. .+++|+|+|+ .+++++.+ +.|++||+.+++
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-----l~~~~~--~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~- 186 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRE-----LARLPG--FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGG- 186 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEE-----EEEESS--CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCC-
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEE-----eecCCC--ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCC-
Confidence 8888887655555555666699997754321 222323 7899999999 88877766 789999998875
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEE--------EeCCCCC
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE--------WSPHEGS 385 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~--------~sp~~~~ 385 (479)
...+..|...+..++|+|++ ..|+++..++ .|++||+.++. .. .+..|...+..+. |+|++ .
T Consensus 187 -~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~ 258 (582)
T 3o4h_A 187 -LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGS----VE-DLELPSKDFSSYRPTAITWLGYLPDG-R 258 (582)
T ss_dssp -CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCC----EE-ECCCSCSHHHHHCCSEEEEEEECTTS-C
T ss_pred -ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCc----EE-EccCCCcChhhhhhccccceeEcCCC-c
Confidence 44677888889999999999 7888888888 89999998876 45 6777887777777 99977 9
Q ss_pred EEEEEeCCCcEEEEEC
Q 039302 386 TLAVSSADNQLTIWDL 401 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl 401 (479)
++++++.|+++++|++
T Consensus 259 ~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 259 LAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEEETTEEEEEET
T ss_pred EEEEEEcCCcEEEEEE
Confidence 9999999999999999
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-15 Score=147.49 Aligned_cols=251 Identities=8% Similarity=0.005 Sum_probs=156.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCC-CCcccccccccccCCCCCccccCCCcE--EecCCCCceEEEEeCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFR-SHLNALAESETVAGHGAPQVLNQSPLV--KFGGHKDEGYAIDWNP 243 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~ 243 (479)
++...+..++|+|++ .+|++++.+ .|.+|++. . ++... ....+. ...+++|+|
T Consensus 37 ~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~---------------------g~~~~~~~~~~~g-~~~~~~~sp 92 (365)
T 1jof_A 37 PQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSP---------------------TEIVHEASHPIGG-HPRANDADT 92 (365)
T ss_dssp CTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEET---------------------TEEEEEEEEECCS-SGGGGCTTS
T ss_pred CCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCC---------------------CCEEEeeEeecCC-CCccEEECC
Confidence 345578899999999 555666666 99999986 3 22211 111112 355689999
Q ss_pred CCCCe--EEEEe-------------CCCeEEEEecCCCCccccCCCCc-ccCCCcEEEEEECCCCCcEEEEEe-CCCcEE
Q 039302 244 VAPGR--LVSGD-------------CNSCIHLWEPASDATWNVDPNPF-IGHAASVEDLQWSPTESDVFASCS-VDGNIA 306 (479)
Q Consensus 244 ~~~~~--l~sg~-------------~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~ 306 (479)
++. + +++++ .+|.+.+|++...+........+ ..+...+.+++|+|+++ +++++. .++.|+
T Consensus 93 dg~-~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~ 170 (365)
T 1jof_A 93 NTR-AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLW 170 (365)
T ss_dssp CCE-EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEE
T ss_pred CCC-EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEE
Confidence 986 4 34443 68999999997433221100111 12456799999999998 555554 478999
Q ss_pred EEEcC-CCCce-eeEEe--cCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceE---EEee-------cCC
Q 039302 307 IWDTR-VGKSA-LMSFK--AHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVV---AHFE-------YHK 371 (479)
Q Consensus 307 iwD~~-~~~~~-~~~~~--~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~---~~~~-------~h~ 371 (479)
+||+. +++.. +..+. .|...+..++|+|++ .+|++++ .++.|.+|++..... ... ..+. +|.
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 171 THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATH--MPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTC--CEEEEEEEEESSCTTCCCBC
T ss_pred EEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCC--cEEEccceEEcCCCCcCCcc
Confidence 99998 55421 22233 246679999999999 6665555 578999998753211 021 1222 122
Q ss_pred C------CeEEEE-EeCCCCCEEEEEeC-CC-----cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE-EeecC
Q 039302 372 H------PVTSIE-WSPHEGSTLAVSSA-DN-----QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL-FIHQG 437 (479)
Q Consensus 372 ~------~I~~v~-~sp~~~~~las~s~-Dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~h~g 437 (479)
. .+..++ |+|++ ++|++++. ++ +|.+|++...... ..+. .....
T Consensus 248 ~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~---------------------~~~~~~~~~~ 305 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSI---------------------EKQLFLSPTP 305 (365)
T ss_dssp TTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCE---------------------EEEEEEEECS
T ss_pred cccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCE---------------------EEeeeeeecC
Confidence 2 588999 99966 66666554 33 8999999632110 0111 12112
Q ss_pred CCCeeeEEEeC---CCCcEEEEEcCCC-ceEEeee
Q 039302 438 QKDLKELHWHT---QVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 438 ~~~V~~v~w~p---~~~~ll~s~~~dg-i~iw~~~ 468 (479)
...+..++|+| ++.+++++...++ |.+|++.
T Consensus 306 ~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 23578899999 6865555544445 9999874
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-15 Score=147.55 Aligned_cols=196 Identities=10% Similarity=0.052 Sum_probs=140.8
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC------CCceEEEEeCCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH------KDEGYAIDWNPV 244 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~s~~ 244 (479)
.+..++|+|++..+++++..++.|.+||+.. .+.+..+..+ ...+.+++|+|+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---------------------~~~~~~~~~~~~~~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---------------------CKNTFHANLSSVPGEVGRSMYSFAISPD 102 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCC---------------------CcEEEEEEcccccccccccccceEECCC
Confidence 6889999999966777878899999999976 3333334322 223788999999
Q ss_pred CCCeEEEEeCC------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 245 APGRLVSGDCN------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 245 ~~~~l~sg~~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
+. +|++++.+ +.|.+||+.++.... ......+...+.+++|+|+++ +++ ++ +.|.+||+.+
T Consensus 103 g~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~ 175 (349)
T 1jmx_B 103 GK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--PVRTFPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKT 175 (349)
T ss_dssp SS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--CSEEEECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTT
T ss_pred CC-EEEEEcccccccccccccCCCeEEEEECCCccccc--eeeeccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCC
Confidence 98 88888765 899999997643211 111222344688999999998 665 33 4499999987
Q ss_pred CCceeeEEecC--------------------------------------------------------------------C
Q 039302 313 GKSALMSFKAH--------------------------------------------------------------------N 324 (479)
Q Consensus 313 ~~~~~~~~~~h--------------------------------------------------------------------~ 324 (479)
++ .+..+..+ .
T Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
T 1jmx_B 176 GK-YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 254 (349)
T ss_dssp CC-EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred Cc-eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence 75 33333211 1
Q ss_pred CCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 325 ADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 325 ~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..+..++|+| ++ .+|+++ ++.|.+||+.+.+ .+..+.. ...+.+++|+|++ .+|++++.++.|.+||+.+
T Consensus 255 ~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~----~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 255 ELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRK----LIKAANL-DHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp SCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTE----EEEEEEC-SSCCCEEEECSSS-SCEEEESBSSEEEEEETTT
T ss_pred CcceeeEecCCCC-CEEEEE--cCeEEEEECccCe----EEEEEcC-CCCccceEECCCC-CEEEEecCCCeEEEEeccc
Confidence 1355778889 88 677776 8899999999876 5666653 3457899999966 6666678899999999987
Q ss_pred C
Q 039302 404 E 404 (479)
Q Consensus 404 ~ 404 (479)
.
T Consensus 326 ~ 326 (349)
T 1jmx_B 326 L 326 (349)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=175.80 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=138.0
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---ceEEEEeCCCCCCeEE
Q 039302 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---EGYAIDWNPVAPGRLV 250 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~~l~ 250 (479)
.++|+|++ .++++ +.+|+|++||+.. +++...+.+|.. .+.+++|||+++ +|+
T Consensus 20 ~~~~s~dg-~~~~~-~~d~~i~~~~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la 75 (719)
T 1z68_A 20 FPNWISGQ-EYLHQ-SADNNIVLYNIET---------------------GQSYTILSNRTMKSVNASNYGLSPDRQ-FVY 75 (719)
T ss_dssp CCEESSSS-EEEEE-CTTSCEEEEESSS---------------------CCEEEEECHHHHHTTTCSEEEECTTSS-EEE
T ss_pred ccEECCCC-eEEEE-cCCCCEEEEEcCC---------------------CcEEEEEccccccccceeeEEECCCCC-eEE
Confidence 67999999 67666 5699999999987 444455544432 389999999998 888
Q ss_pred EEeC---------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 251 SGDC---------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 251 sg~~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+++. ++.|++||+.++.... ...+ ...+.+++|||+|+ .|+.++ ++.|++||+.++........
T Consensus 76 ~~~~~~~~~~~s~~~~i~~~d~~~g~~~~--~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 76 LESDYSKLWRYSYTATYYIYDLSNGEFVR--GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECC--SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred EEecCceeEEeecceEEEEEECCCCcccc--ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 8876 7899999998754310 0112 24688899999999 777775 78999999988753222222
Q ss_pred cCCCCE-----------------EEEEEcCCCCcEEEEEeCCC----------------------------------eEE
Q 039302 322 AHNADV-----------------NVISWNRLASCLLASGSDDG----------------------------------TFS 350 (479)
Q Consensus 322 ~h~~~v-----------------~~l~~~p~~~~~l~sgs~dg----------------------------------~i~ 350 (479)
++...| .+++|+|++ ..||+++.|. .|+
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 333222 489999999 7888877542 788
Q ss_pred EEeCCCCCCCCceE--------EEeecCCCCeEEEEEeCCCCCEEEEEeCC----CcEEEEE----CCCC
Q 039302 351 IHDLRLLKGGDSVV--------AHFEYHKHPVTSIEWSPHEGSTLAVSSAD----NQLTIWD----LSLE 404 (479)
Q Consensus 351 iwDlr~~~~~~~~~--------~~~~~h~~~I~~v~~sp~~~~~las~s~D----g~I~iwd----l~~~ 404 (479)
+||+.+.. .. ..+.+|...+.+++|+|+ +.++++.... ..|.+|| +..+
T Consensus 228 ~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 228 IIDTTYPA----YVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp EEESSCHH----HHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred EEECCCCC----ccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 99998765 21 123458888999999997 4777764432 2488889 6554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-15 Score=143.64 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=140.3
Q ss_pred ceeEEEEecCCCcEEEEEe------------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 171 CVNRIRAMSQNPHICASWA------------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
.+..++|+|++. .+++++ .++.|.+||+.. .+.+..+.. ...+.+
T Consensus 83 ~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------------------~~~~~~~~~-~~~~~~ 139 (337)
T 1pby_B 83 SLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAET---------------------LSRRKAFEA-PRQITM 139 (337)
T ss_dssp CTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTT---------------------TEEEEEEEC-CSSCCC
T ss_pred cccceEECCCCC-EEEEEecccccccccccccCceEEEEECCC---------------------CcEEEEEeC-CCCcce
Confidence 688899999995 444544 579999999976 344444443 346788
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---------------
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--------------- 303 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--------------- 303 (479)
++|+|++. +|+++ ++.|.+||+.++..... .....+..+ +.|+|++..+++++..++
T Consensus 140 ~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~--~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1pby_B 140 LAWARDGS-KLYGL--GRDLHVMDPEAGTLVED--KPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp EEECTTSS-CEEEE--SSSEEEEETTTTEEEEE--ECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred eEECCCCC-EEEEe--CCeEEEEECCCCcEeee--eeccccCCC---ceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence 99999998 77777 68999999987543211 011111122 278898874444443333
Q ss_pred --------cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE
Q 039302 304 --------NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375 (479)
Q Consensus 304 --------~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~ 375 (479)
.|.+||+.+++.....+..+...+.+++|+|++ .+|+++ ++.|.+||+.+.+ .+..+.. ...+.
T Consensus 212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~----~~~~~~~-~~~~~ 283 (337)
T 1pby_B 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA----SIKRVPL-PHSYY 283 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE----EEEEEEC-SSCCC
T ss_pred ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc----CcceecC-CCcee
Confidence 468999998864334456677788999999999 677776 6999999998876 5666654 35678
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+++|+|++ .+|++++.++.|.+||+...+
T Consensus 284 ~~~~s~dg-~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 284 SVNVSTDG-STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEEECTTS-CEEEEESBSSEEEEEETTTCC
T ss_pred eEEECCCC-CEEEEEcCCCcEEEEECcCCc
Confidence 99999965 778888889999999998764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-16 Score=164.12 Aligned_cols=200 Identities=10% Similarity=0.089 Sum_probs=141.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-----eEEEEeCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-----GYAIDWNPV 244 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~~ 244 (479)
.....++|+|++ .+++++ +|+|++||+.+ ++....+.+|... ...++|||+
T Consensus 17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~Spd 72 (740)
T 4a5s_A 17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEY---------------------GNSSVFLENSTFDEFGHSINDYSISPD 72 (740)
T ss_dssp CCCCCEEECSSS-EEEEEE--TTEEEEEETTT---------------------CCEEEEECTTTTTTCCSCCCEEEECTT
T ss_pred ccccccEECCCC-cEEEEc--CCcEEEEECCC---------------------CceEEEEechhhhhhcccccceEECCC
Confidence 456689999999 788875 89999999987 4445556666532 245889999
Q ss_pred CCCeEEEEeCC---------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 245 APGRLVSGDCN---------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 245 ~~~~l~sg~~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
+. +|+.++.+ +.+.+||+.++.. ..+..|...+...+|||+|+ .||.++ ++.|++||+.++..
T Consensus 73 g~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-----~~l~~~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 73 GQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQL-----ITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp SS-EEEEEEEEEECSSSCEEEEEEEEETTTTEE-----CCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCC
T ss_pred CC-EEEEEECCeeeEEEccceEEEEEECCCCcE-----EEcccCCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCce
Confidence 98 88888875 6677999987643 33566778899999999999 677775 78999999988753
Q ss_pred eeeEEecCCCCE-----------------EEEEEcCCCCcEEEEEeCCC-------------------------------
Q 039302 316 ALMSFKAHNADV-----------------NVISWNRLASCLLASGSDDG------------------------------- 347 (479)
Q Consensus 316 ~~~~~~~h~~~v-----------------~~l~~~p~~~~~l~sgs~dg------------------------------- 347 (479)
...+..++...+ ..+.|+|+| ..||.++.|.
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 222223333222 358999999 7777764321
Q ss_pred -----eEEEEeCCC---CCCCCceEEEee------cCCCCeEEEEEeCCCCCEEEEEeC----CCcEEEEECCCCC
Q 039302 348 -----TFSIHDLRL---LKGGDSVVAHFE------YHKHPVTSIEWSPHEGSTLAVSSA----DNQLTIWDLSLEK 405 (479)
Q Consensus 348 -----~i~iwDlr~---~~~~~~~~~~~~------~h~~~I~~v~~sp~~~~~las~s~----Dg~I~iwdl~~~~ 405 (479)
.|++||+.+ +.. .....+. +|...+..++|+|++ .+++.... +..|.+||+.++.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTN--ATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSC--CCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCeeEEEEEECCCCCCCCc--ceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCc
Confidence 578889887 521 0122333 377789999999976 65554432 3479999998763
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-13 Score=132.57 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=172.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCC------------------------ceEEEEeCCCCcccccccccccCCCCCccccCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADT------------------------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~d------------------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (479)
-+.|..|+++|++ +++++.+.+ ++|.+||..+ ++
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------------------g~ 80 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---------------------AE 80 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---------------------CC
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---------------------Ce
Confidence 3779999999999 677777777 4688888765 33
Q ss_pred CcEEec-CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC-ccccCCC-----CcccCCCcEEEEEECC-CCCcEE
Q 039302 225 PLVKFG-GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA-TWNVDPN-----PFIGHAASVEDLQWSP-TESDVF 296 (479)
Q Consensus 225 ~~~~~~-~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~-~~~~~~~-----~~~~h~~~V~~l~~sp-~~~~~l 296 (479)
.+..+. ++-....+|++++++. ++++...++.|++|+..... ....... .-.++......|+++| ++. ++
T Consensus 81 ~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-ly 158 (329)
T 3fvz_A 81 ILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VF 158 (329)
T ss_dssp EEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EE
T ss_pred EEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EE
Confidence 333333 3445788999999998 88888889999999985431 1110000 0023455789999999 565 88
Q ss_pred EEEe-CCCcEEEEEcCCCCceeeEEecC----------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE
Q 039302 297 ASCS-VDGNIAIWDTRVGKSALMSFKAH----------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA 365 (479)
Q Consensus 297 ~s~s-~dg~I~iwD~~~~~~~~~~~~~h----------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~ 365 (479)
++.+ .++.|++||. .+. .+..+... -.....|+++|+++.++++...++.|++||..+++ .+.
T Consensus 159 v~d~~~~~~I~~~~~-~g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----~~~ 232 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSP-SGK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----FVR 232 (329)
T ss_dssp EEECSSCCEEEEECT-TSC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEE
T ss_pred EEeCCCCCeEEEEcC-CCC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----EEE
Confidence 8886 6999999994 343 34444322 23489999999844899999999999999998666 677
Q ss_pred Eee--cCCCCeEEEEEeCCCCCEEEEEeC-------CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-
Q 039302 366 HFE--YHKHPVTSIEWSPHEGSTLAVSSA-------DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH- 435 (479)
Q Consensus 366 ~~~--~h~~~I~~v~~sp~~~~~las~s~-------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h- 435 (479)
.+. .+...+.+++|+| + ..+++.+. +.+|++|++..+. ++...
T Consensus 233 ~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~-------------------------~~~~~~ 285 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGE-------------------------IIDVFK 285 (329)
T ss_dssp EECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCC-------------------------EEEEEC
T ss_pred EEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCe-------------------------EEEEEc
Confidence 663 4667889999999 3 55555443 4489999988763 22221
Q ss_pred ---cCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 436 ---QGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 436 ---~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+...+..|+++|++ .++++...++ |.+|++...
T Consensus 286 ~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred CCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 122358999999999 5777776666 888887653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-14 Score=138.56 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=137.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--------cCCCCce
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--------GGHKDEG 236 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v 236 (479)
...+......+++ ++..++++...++.|.+|++........ ....... ..+...+
T Consensus 95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~---------------~~~~~~~~g~~~~~~~~~~~~~ 157 (361)
T 3scy_A 95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP---------------ASDVIEFKGSGPDKERQTMPHL 157 (361)
T ss_dssp EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS---------------CSEEEECCCCCSCTTTCSSCCE
T ss_pred eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc---------------cceeEEccCCCCCccccCCCcc
Confidence 3345566777777 6656666666789999999975211000 0000001 1123346
Q ss_pred EEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCc------cccC---CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 237 YAIDWNPVAPGRLVSGD-CNSCIHLWEPASDAT------WNVD---PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~------~~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
.+++|+|++. +|++++ .++.|.+|++..... .... ......+...+..++|+|+++.+++++..++.|.
T Consensus 158 ~~~~~spdg~-~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 158 HCVRITPDGK-YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp EEEEECTTSS-EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred eEEEECCCCC-EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 8899999997 565544 588999999875432 1000 0111223456789999999984444444799999
Q ss_pred EEEcCCCCc-eeeEE---ecCCCCEEEEEEcCCCCcEEEE-EeC-CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 307 IWDTRVGKS-ALMSF---KAHNADVNVISWNRLASCLLAS-GSD-DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 307 iwD~~~~~~-~~~~~---~~h~~~v~~l~~~p~~~~~l~s-gs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+||+.++.. .+..+ ..+......++|+|++ .+|++ ... ++.|.+|++.........+..+.. ...+.+++|+
T Consensus 237 v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 237 AFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred EEEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 999986531 12222 2233557899999999 55544 444 589999999632211123444544 5678899999
Q ss_pred CCCCCEEEEEe-CCCcEEEEECCC
Q 039302 381 PHEGSTLAVSS-ADNQLTIWDLSL 403 (479)
Q Consensus 381 p~~~~~las~s-~Dg~I~iwdl~~ 403 (479)
|++ .+|++++ .++.|.+|.+..
T Consensus 315 pdg-~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 315 PNG-KYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp TTS-CEEEEEETTTTEEEEEEECT
T ss_pred CCC-CEEEEEECCCCCEEEEEEEC
Confidence 966 6666666 679999977654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-14 Score=132.20 Aligned_cols=240 Identities=10% Similarity=0.040 Sum_probs=166.5
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec------CCCCceEEEEe
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------GHKDEGYAIDW 241 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~ 241 (479)
|-..+.++++.+++ .++++.+.++.|.+||.... .+..+. +|...+.++++
T Consensus 28 ~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~----------------------~~~~~~~~~~~~~~~~~p~~i~~ 84 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGR----------------------FKFQFGECGKRDSQLLYPNRVAV 84 (286)
T ss_dssp CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSC----------------------EEEEECCBSSSTTCBSSEEEEEE
T ss_pred ccCCCceEEECCCC-CEEEEECCCCEEEEECCCCc----------------------EEEEecccCCCcccccCceEEEE
Confidence 44678899999998 68888788999999997641 122221 34457889999
Q ss_pred -CCCCCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 242 -NPVAPGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 -s~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.+++. ++++... ++.|.+|+. ++..... ....+...+.+++++|++. ++++...++.|.+||.... .+..
T Consensus 85 ~~~~g~-l~v~~~~~~~~i~~~d~-~g~~~~~---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~--~~~~ 156 (286)
T 1q7f_A 85 VRNSGD-IIVTERSPTHQIQIYNQ-YGQFVRK---FGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN--VLHK 156 (286)
T ss_dssp ETTTTE-EEEEECGGGCEEEEECT-TSCEEEE---ECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC--EEEE
T ss_pred EcCCCe-EEEEcCCCCCEEEEECC-CCcEEEE---ecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC--EEEE
Confidence 45554 5555433 889999994 3332111 0112345789999999997 8888888899999996532 3444
Q ss_pred Ee--cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--CCCeEEEEEeCCCCCEEEEEeCCC-
Q 039302 320 FK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--KHPVTSIEWSPHEGSTLAVSSADN- 394 (479)
Q Consensus 320 ~~--~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~~~I~~v~~sp~~~~~las~s~Dg- 394 (479)
+. .+...++.|++++++ .++++...++.|++||... . .+..+..+ ...+..|+++|++ .++++...++
T Consensus 157 ~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~----~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~ 229 (286)
T 1q7f_A 157 FGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-Q----YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNF 229 (286)
T ss_dssp EECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-C----EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSC
T ss_pred eCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-C----EEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCE
Confidence 43 344578999999998 7888888899999999743 3 45666543 3678999999965 8888888776
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.|.+|+..... ...+..+.....+.+++++|++. ++++..++.|.+|++..
T Consensus 230 ~i~~~~~~g~~-----------------------~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 230 NLTIFTQDGQL-----------------------ISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEECTTSCE-----------------------EEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSC
T ss_pred EEEEECCCCCE-----------------------EEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEccc
Confidence 99999954321 01222233223478999999985 77765543499998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-14 Score=141.44 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=154.2
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE--eCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID--WNPV 244 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~~ 244 (479)
+|...+..+.|+|++ ..|+.++.++.|++||+.. .+....+..+...+.... ++++
T Consensus 78 ~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~d 135 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLAT---------------------LEENVVYQVPAEWVGYGTWVANSD 135 (388)
T ss_dssp SSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEECCTTEEEEEEEEECTT
T ss_pred CCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcceeeeechhhcccccceeECCC
Confidence 444555578899999 5666778888999999987 344444445555444344 4788
Q ss_pred CCCeEEEE----------------------eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeC
Q 039302 245 APGRLVSG----------------------DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSV 301 (479)
Q Consensus 245 ~~~~l~sg----------------------~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~ 301 (479)
+. +|+.. ..+..|.+||+.++.. ..+..+...+..++|+| +++ .|+.++.
T Consensus 136 g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~~~~~~sp~dg~-~l~~~~~ 208 (388)
T 3pe7_A 136 CT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQENQWLGHPIYRPYDDS-TVAFCHE 208 (388)
T ss_dssp SS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEETTEEE-EEEEEEC
T ss_pred CC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCCccccccEECCCCCC-EEEEEEe
Confidence 86 66532 2346899999987643 23445667789999999 888 6766665
Q ss_pred C------CcEEEEEcCCCCceeeEEecCC--CCEEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEEEeec
Q 039302 302 D------GNIAIWDTRVGKSALMSFKAHN--ADVNVISWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 302 d------g~I~iwD~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
+ ..|.++|+.... ...+..+. ..+..++|+|++..+++++..++ .|++||+.+++. ..+..+.+
T Consensus 209 ~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~ 284 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPA 284 (388)
T ss_dssp SCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECC
T ss_pred cCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCC
Confidence 3 378888876653 33343343 25778999999944444443332 399999988762 12333332
Q ss_pred CCCC---eEEEEEeCCCCCEEEEE--------eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-
Q 039302 370 HKHP---VTSIEWSPHEGSTLAVS--------SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG- 437 (479)
Q Consensus 370 h~~~---I~~v~~sp~~~~~las~--------s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g- 437 (479)
+... ...+.|+|++..++++. ..+..|++||+..... ..+..+.+
T Consensus 285 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----------------------~~l~~~~~~ 341 (388)
T 3pe7_A 285 CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-----------------------HRVARHDTS 341 (388)
T ss_dssp EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-----------------------EEEEECCCC
T ss_pred ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-----------------------EEeccccCc
Confidence 1100 11237999764443332 4567899999987531 22333332
Q ss_pred --------CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 438 --------QKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 438 --------~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
...+..++|+|++..+++++..++ .+||.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 004788999999987777766666 7777653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=141.20 Aligned_cols=208 Identities=12% Similarity=-0.016 Sum_probs=139.8
Q ss_pred EEEecCCcceeE-----EEEecCCCcEEEEEeCCce--EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc
Q 039302 163 LRKVAHQGCVNR-----IRAMSQNPHICASWADTGH--VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE 235 (479)
Q Consensus 163 ~~~~~H~~~V~~-----v~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (479)
.++..|.+.+.. .+|+|++..++.+...+|. |.+||+.. .+......++...
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~---------------------g~~~~lt~~~~~~ 82 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT---------------------QVATQLTEGRGDN 82 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---------------------CEEEECCCSSCBC
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC---------------------CceEEeeeCCCCC
Confidence 456677766666 8999999655555444774 77778765 3333334455555
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEE--ECCCCCcEEEEE--------------
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ--WSPTESDVFASC-------------- 299 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~--~sp~~~~~l~s~-------------- 299 (479)
+.++.|+|++. .|+.++.++.|++||+.++.... .+..+...+.... ++|++. +++..
T Consensus 83 ~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~~----~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 83 TFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEENV----VYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp SSSCEECTTSS-EEEEEETTTEEEEEETTTCCEEE----EEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHH
T ss_pred ccceEEcCCCC-EEEEEeCCCeEEEEECCCCccee----eeechhhcccccceeECCCCC-eeccccccCcccccccccc
Confidence 66788999998 99999999999999998765422 1223344444444 489888 55532
Q ss_pred --------eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcC-CCCcEEEEEeCC------CeEEEEeCCCCCCCCceE
Q 039302 300 --------SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNR-LASCLLASGSDD------GTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 300 --------s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~d------g~i~iwDlr~~~~~~~~~ 364 (479)
+.+..|.+||+.+++ ...+..+...+..++|+| ++ ..|+..+.. ..|.++|+.... .
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~ 228 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN-----M 228 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC-----C
T ss_pred hhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc-----e
Confidence 234679999999875 344555667799999999 88 777766653 378888876544 3
Q ss_pred EEeecCC--CCeEEEEEeCCCCCEEEEEeCCC----cEEEEECCCCC
Q 039302 365 AHFEYHK--HPVTSIEWSPHEGSTLAVSSADN----QLTIWDLSLEK 405 (479)
Q Consensus 365 ~~~~~h~--~~I~~v~~sp~~~~~las~s~Dg----~I~iwdl~~~~ 405 (479)
..+..+. ..+..+.|+|++..+++++..++ .|++||+..+.
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 3444444 35888999997744434443322 39999998764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-13 Score=127.78 Aligned_cols=240 Identities=11% Similarity=0.029 Sum_probs=162.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..+.....+++|+|++..+++++..++.|++|+... . ...+..+...+.++++++
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------------------~--~~~~~~~~~~~~~l~~~~ 78 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------------------Q--LSPEMHPSHHQNGHCLNK 78 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------------------C--EEEEESSCSSEEEEEECT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------------------C--eEEEECCCCCcceeeECC
Confidence 34456677889999999965888989999999999876 2 455666777899999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeC-----------------CCcE
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSV-----------------DGNI 305 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~-----------------dg~I 305 (479)
++. ++++...++.|.+||..++..... .....+ ....+++++++|++. ++++.+. .+.|
T Consensus 79 dg~-l~v~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 79 QGH-LIACSHGLRRLERQREPGGEWESI-ADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp TCC-EEEEETTTTEEEEECSTTCCEEEE-ECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred CCc-EEEEecCCCeEEEEcCCCCcEEEE-eeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEE
Confidence 987 777766678999999976543221 011111 123567899999998 7776321 2345
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce---EEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV---VAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~---~~~~~~h~~~I~~v~~sp~ 382 (479)
..++.. + .+..+..+....+.++|+|++ .+|++.+.++.|.+||+..... . ...+..+...+..++++++
T Consensus 156 ~~~~~~-g--~~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~---~~~~~~~~~~~~~~p~~i~~d~~ 228 (296)
T 3e5z_A 156 FRLAPD-G--TLSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGE---TEYQGVHFTVEPGKTDGLRVDAG 228 (296)
T ss_dssp EEECTT-S--CEEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSC---EEEEEEEECCSSSCCCSEEEBTT
T ss_pred EEECCC-C--CEEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCc---CcCCCeEeeCCCCCCCeEEECCC
Confidence 555544 2 244455566778999999999 6668888889999999973221 2 2333335566788999996
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg 461 (479)
+ +++++. ++.|.+|+.... .+.....+.. +.+++|. |++..|.++ +.++
T Consensus 229 G-~l~v~~--~~~v~~~~~~g~-------------------------~~~~~~~~~~-~~~~~f~~~d~~~L~v~-t~~~ 278 (296)
T 3e5z_A 229 G-LIWASA--GDGVHVLTPDGD-------------------------ELGRVLTPQT-TSNLCFGGPEGRTLYMT-VSTE 278 (296)
T ss_dssp S-CEEEEE--TTEEEEECTTSC-------------------------EEEEEECSSC-CCEEEEESTTSCEEEEE-ETTE
T ss_pred C-CEEEEc--CCeEEEECCCCC-------------------------EEEEEECCCC-ceeEEEECCCCCEEEEE-cCCe
Confidence 5 666655 889999998622 1222222223 8999994 777645554 4564
Q ss_pred ceEEeee
Q 039302 462 FNILMPS 468 (479)
Q Consensus 462 i~iw~~~ 468 (479)
+|++.
T Consensus 279 --l~~~~ 283 (296)
T 3e5z_A 279 --FWSIE 283 (296)
T ss_dssp --EEEEE
T ss_pred --EEEEE
Confidence 55443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=148.12 Aligned_cols=201 Identities=10% Similarity=0.119 Sum_probs=132.1
Q ss_pred eEEEEecCCCcEEEEEeCC---------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 173 NRIRAMSQNPHICASWADT---------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
+.+.|+|++ ..|+.++.+ +.+.+||+.+. + ...+..|...+...+|||
T Consensus 65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~---------------------~-~~~l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKR---------------------Q-LITEERIPNNTQWVTWSP 121 (740)
T ss_dssp CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTT---------------------E-ECCSSCCCTTEEEEEECS
T ss_pred cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCC---------------------c-EEEcccCCCcceeeEECC
Confidence 458899999 555565654 66789999872 2 223556777899999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE-----------------EEEEECCCCCcEEEEEeCCC---
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV-----------------EDLQWSPTESDVFASCSVDG--- 303 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V-----------------~~l~~sp~~~~~l~s~s~dg--- 303 (479)
+|. .||.+. ++.|++|++.++.... ....++...+ ..+.|||+|+ .||.++.|.
T Consensus 122 dG~-~la~~~-~~~i~~~~~~~~~~~~---lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v 195 (740)
T 4a5s_A 122 VGH-KLAYVW-NNDIYVKIEPNLPSYR---ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEV 195 (740)
T ss_dssp STT-CEEEEE-TTEEEEESSTTSCCEE---CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTC
T ss_pred CCC-EEEEEE-CCeEEEEECCCCceEE---EcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCC
Confidence 998 888885 7899999997755422 1122332222 3589999999 777765322
Q ss_pred ---------------------------------cEEEEEcCC---CCc-eeeEEe------cCCCCEEEEEEcCCCCcEE
Q 039302 304 ---------------------------------NIAIWDTRV---GKS-ALMSFK------AHNADVNVISWNRLASCLL 340 (479)
Q Consensus 304 ---------------------------------~I~iwD~~~---~~~-~~~~~~------~h~~~v~~l~~~p~~~~~l 340 (479)
.|++||+.+ +.. ....+. .|...+..++|+|++ .++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~ 274 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RIS 274 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEE
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEE
Confidence 478899887 621 122332 277789999999999 655
Q ss_pred EEEeC----CCeEEEEeCCCCC----CCCceEEEeecCCCCeE-----EEEEeCCCCCEEE-EEe-CCC--cEEEEECCC
Q 039302 341 ASGSD----DGTFSIHDLRLLK----GGDSVVAHFEYHKHPVT-----SIEWSPHEGSTLA-VSS-ADN--QLTIWDLSL 403 (479)
Q Consensus 341 ~sgs~----dg~i~iwDlr~~~----~~~~~~~~~~~h~~~I~-----~v~~sp~~~~~la-s~s-~Dg--~I~iwdl~~ 403 (479)
+.... +..|++||+.++. ........-..|...|. .+.|+|++ ..|+ ..+ .+| .|++||+..
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTC
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCC
Confidence 55432 3479999998765 10001111144666554 78999976 5554 555 344 577788765
Q ss_pred C
Q 039302 404 E 404 (479)
Q Consensus 404 ~ 404 (479)
.
T Consensus 354 ~ 354 (740)
T 4a5s_A 354 K 354 (740)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-14 Score=138.08 Aligned_cols=206 Identities=12% Similarity=0.011 Sum_probs=135.9
Q ss_pred cceeEEEEecCCCc-EEEEEe-------------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec----C
Q 039302 170 GCVNRIRAMSQNPH-ICASWA-------------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG----G 231 (479)
Q Consensus 170 ~~V~~v~~~p~~~~-~lat~s-------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (479)
+.+.+++|+|++.. ++++++ .+|.+.+|++... ++....+. .
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~--------------------g~~~~~~~~~~~~ 142 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET--------------------GKLEKNVQNYEYQ 142 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT--------------------CCEEEEEEEEECC
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC--------------------CcCcceEeeEEeC
Confidence 34677999999954 455543 6899999999741 22222222 2
Q ss_pred CCCceEEEEeCCCCCCeEEEEeC-CCeEEEEecC-CCCccccCCCCcc--cCCCcEEEEEECCCCCcEEEEEe-CCCcEE
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDC-NSCIHLWEPA-SDATWNVDPNPFI--GHAASVEDLQWSPTESDVFASCS-VDGNIA 306 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~-dg~I~lwd~~-~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~ 306 (479)
+...+.+++|+|+++ +|++++. ++.|++|++. ++..... ..+. .|...+..++|+|+++ ++++++ .++.|.
T Consensus 143 ~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~--~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~ 218 (365)
T 1jof_A 143 ENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELV--GSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRIC 218 (365)
T ss_dssp TTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEE--EEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEE
T ss_pred CCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEe--eeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEE
Confidence 456799999999998 7777653 6799999997 4432111 1121 2456789999999998 555555 578999
Q ss_pred EEEcCC--CCce--eeEEe-------cCCC------CEEEEE-EcCCCCcEEEEEeC-CC-----eEEEEeCCC-CCCCC
Q 039302 307 IWDTRV--GKSA--LMSFK-------AHNA------DVNVIS-WNRLASCLLASGSD-DG-----TFSIHDLRL-LKGGD 361 (479)
Q Consensus 307 iwD~~~--~~~~--~~~~~-------~h~~------~v~~l~-~~p~~~~~l~sgs~-dg-----~i~iwDlr~-~~~~~ 361 (479)
+|++.. ++.. ...+. +|.. .+..++ |+|++ ++|++++. .+ .|.+|++.. +.
T Consensus 219 v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~--- 294 (365)
T 1jof_A 219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGS--- 294 (365)
T ss_dssp EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSC---
T ss_pred EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCC---
Confidence 998763 3311 11121 1122 488999 99999 55555543 23 899999963 33
Q ss_pred ceEE---EeecCCCCeEEEEEeCC--CCCEEEEEeC-CCcEEEEECCCC
Q 039302 362 SVVA---HFEYHKHPVTSIEWSPH--EGSTLAVSSA-DNQLTIWDLSLE 404 (479)
Q Consensus 362 ~~~~---~~~~h~~~I~~v~~sp~--~~~~las~s~-Dg~I~iwdl~~~ 404 (479)
... ....+...+..++|+|. ++.+|++++. ++.|.+|++...
T Consensus 295 -~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 295 -IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 322 23345556778999994 3478888876 489999998654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-14 Score=146.74 Aligned_cols=248 Identities=10% Similarity=-0.016 Sum_probs=162.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEE--eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE----
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASW--ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY---- 237 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~--s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---- 237 (479)
.+.+|...|..++++++. .++++. +.++...||.... ......+..|...+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~ 75 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRA---------------------DGAEESALPAPWNVRNRVF 75 (662)
T ss_dssp HHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECT---------------------TSCEEESSCTTCCBCCCGG
T ss_pred HHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECC---------------------CCCcceeCCCCcccccccc
Confidence 456799999999999876 566666 5588999999733 122334444544444
Q ss_pred -----EEEeC--CCCCCe-EEEEeC-CCeEEEEecC--C-CCccccCCCCccc-----CCCcEEEEEECCCCCcEEEEEe
Q 039302 238 -----AIDWN--PVAPGR-LVSGDC-NSCIHLWEPA--S-DATWNVDPNPFIG-----HAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 238 -----~l~~s--~~~~~~-l~sg~~-dg~I~lwd~~--~-~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~~l~s~s 300 (479)
...|+ |++. + |+.++. +..|.+|++. . +.. ..+.. |...+.+++|+|+++ .|++++
T Consensus 76 ~~~~~~~~~~~SPDg~-~~la~~~~~~~~l~~~~~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~ 148 (662)
T 3azo_A 76 EYSGFPWAGVPRPAGG-PLLVFTHFGDQRLYAFEPDAPGGAVP-----RPLTPVSAVGGGLRWADPVLLPERG-EVWCMA 148 (662)
T ss_dssp GTCCCCEEEECCSSSS-CEEEEEBTTTCCEEEECTTSTTCCCC-----EECSCCCCSTTCEEEEEEEEETTTT-EEEEEE
T ss_pred ccCCccceeeeecCCC-eEEEEEECCCCeEEEEcCCCCCCCCC-----EeccCCccCCCCccccCcEECCCCC-EEEEEE
Confidence 55565 9998 6 665543 5677777765 2 222 12222 667889999999999 777777
Q ss_pred CC----------CcEEEEEcCC------CCceeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCC
Q 039302 301 VD----------GNIAIWDTRV------GKSALMSFK-AHNADVNVISWNRLASCLLASGSDD--------GTFSIHDLR 355 (479)
Q Consensus 301 ~d----------g~I~iwD~~~------~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr 355 (479)
.+ ..|.+||+.+ +. ...+. .+...+..++|+|++ ..|+.++.+ ..|++||+.
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EEECSSSTTCEEEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred ecccCCCCCCceeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 66 5899999987 43 34444 556678889999999 777766644 479999998
Q ss_pred -CCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc--EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 356 -LLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ--LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 356 -~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
++.. .........|...+..+.|+|++ .++++++.++. |.+||+...... ++.
T Consensus 226 ~~g~~-~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~----------------------~l~ 281 (662)
T 3azo_A 226 EDGRF-ADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAAT----------------------QLC 281 (662)
T ss_dssp TTSCE-EEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEE----------------------ESS
T ss_pred CCCcc-cccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCcee----------------------ecc
Confidence 4510 01344445567899999999976 58888888884 555554333100 011
Q ss_pred EeecCC------CCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 433 FIHQGQ------KDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 433 ~~h~g~------~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
..+... -.+..++|+|++. +++++..+.++||.+.
T Consensus 282 ~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d 322 (662)
T 3azo_A 282 RREEEFAGPLWTPGMRWFAPLANGL-IAVVHGKGAAVLGILD 322 (662)
T ss_dssp CCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBSSSCEEEEEE
T ss_pred cccccccCccccccCceEeEeCCCE-EEEEEEcCccEEEEEE
Confidence 101000 0256789999885 7777766338888553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-12 Score=121.50 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=163.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..+...+.+++|+|++ .+++++..++.|++||... .+.......+...+.+++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~i~~~~ 96 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET---------------------KEIKRPFVSHKANPAAIKIHK 96 (333)
T ss_dssp EEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTT---------------------CCEEEEEECSSSSEEEEEECT
T ss_pred EEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCC---------------------CcEEEEeeCCCCCcceEEECC
Confidence 455677788999999998 6888888899999999876 232222324566899999999
Q ss_pred CCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC------CCcEEEEEcCCC
Q 039302 244 VAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------DGNIAIWDTRVG 313 (479)
Q Consensus 244 ~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------dg~I~iwD~~~~ 313 (479)
++. +++++..+ +.|.+||..+....... . ...+...+++++++|++. ++++... .+.|..+|..+.
T Consensus 97 dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 97 DGR-LFVCYLGDFKSTGGIFAATENGDNLQDII-E-DLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp TSC-EEEEECTTSSSCCEEEEECTTSCSCEEEE-C-SSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC
T ss_pred CCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEE-c-cCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCC
Confidence 986 77776655 68999998765432110 1 112345799999999987 6666553 245666665543
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE--------EeecCCCCeEEEEEeCCCCC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA--------HFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~--------~~~~h~~~I~~v~~sp~~~~ 385 (479)
+ +..+..+...++.++|+|++..++++.+.++.|.+||++.... .+. .+.++ ..+..+++++++ .
T Consensus 173 ~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~---~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~ 245 (333)
T 2dg1_A 173 T--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV---TIQPFGATIPYYFTGH-EGPDSCCIDSDD-N 245 (333)
T ss_dssp C--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS---SEEEEEEEEEEECCSS-SEEEEEEEBTTC-C
T ss_pred E--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc---CcccccceEEEecCCC-CCCCceEECCCC-C
Confidence 3 2233333446889999999844556666788999999974221 121 11222 467889999965 7
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec---CC-CCeeeEEEeCCCCcEEEEEcCC-
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ---GQ-KDLKELHWHTQVPGMIVSTAAD- 460 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~---g~-~~V~~v~w~p~~~~ll~s~~~d- 460 (479)
++++...++.|.+||..... ...+..+. |+ ..+.+++|+|++..|++++..+
T Consensus 246 l~v~~~~~~~v~~~d~~g~~-----------------------~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~ 302 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRGYP-----------------------IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE 302 (333)
T ss_dssp EEEEEETTTEEEEECTTSCE-----------------------EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGG
T ss_pred EEEEEcCCCEEEEECCCCCE-----------------------EEEEEcCCCccccccCcceEEECCCCCEEEEEeCccC
Confidence 88887788999999974221 01111111 11 1588999999876666666653
Q ss_pred ---CceEEeee
Q 039302 461 ---GFNILMPS 468 (479)
Q Consensus 461 ---gi~iw~~~ 468 (479)
+-.||++.
T Consensus 303 ~~~~~~l~~~~ 313 (333)
T 2dg1_A 303 MGGGSMLYTVN 313 (333)
T ss_dssp GTCCEEEEEEE
T ss_pred CCCCceEEEEe
Confidence 23566654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=146.30 Aligned_cols=195 Identities=7% Similarity=-0.053 Sum_probs=132.9
Q ss_pred EEEEe--cCCCc-EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccC-CCcEEecC-----CCCceEEEEeCCC
Q 039302 174 RIRAM--SQNPH-ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQ-SPLVKFGG-----HKDEGYAIDWNPV 244 (479)
Q Consensus 174 ~v~~~--p~~~~-~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----h~~~v~~l~~s~~ 244 (479)
..+|+ |++.. ++++...+..|++|++.. .+ .....+.. |...+.+++|+|+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~--------------------~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDA--------------------PGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTS--------------------TTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCC--------------------CCCCCCEeccCCccCCCCccccCcEECCC
Confidence 56666 99966 555544466677777651 01 12233444 5667889999999
Q ss_pred CCCeEEEEeCC----------CeEEEEecCC------CCccccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeCC-----
Q 039302 245 APGRLVSGDCN----------SCIHLWEPAS------DATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCSVD----- 302 (479)
Q Consensus 245 ~~~~l~sg~~d----------g~I~lwd~~~------~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~d----- 302 (479)
++ .|++++.+ ..|++|++.+ +.. ..+. .+...+..++|+|+|+ .|+.++.+
T Consensus 141 g~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~ 213 (662)
T 3azo_A 141 RG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-----RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMP 213 (662)
T ss_dssp TT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-----EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCT
T ss_pred CC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-----eEEEecCCCcccCceECCCCC-EEEEEECCCCCCC
Confidence 98 88888776 5899999976 322 2233 4556788899999999 77766644
Q ss_pred ---CcEEEEEcC-CCC--ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCC-
Q 039302 303 ---GNIAIWDTR-VGK--SALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHP- 373 (479)
Q Consensus 303 ---g~I~iwD~~-~~~--~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~- 373 (479)
..|.+||+. ++. ........|...+..++|+|++ .+++++..++ .|.+||+..+. .......+...
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~ 288 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGA----ATQLCRREEEFA 288 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCC----EEESSCCSSBSS
T ss_pred CCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCc----eeeccccccccc
Confidence 379999998 451 2333334557789999999999 5888888888 66666665544 33322322221
Q ss_pred -------eEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 374 -------VTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 374 -------I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
+.+++|+|++ .++++++. +.++||.+.
T Consensus 289 ~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEE
T ss_pred CccccccCceEeEeCCC-EEEEEEEc-CccEEEEEE
Confidence 5678898854 89999988 999999554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-13 Score=141.29 Aligned_cols=249 Identities=6% Similarity=-0.066 Sum_probs=157.0
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
|...+..++|+|+|..++.+.+..| .|++||+.+ ++.+.....+ ..+..++|+|
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t---------------------g~~~~~~~~~-~~~~~~~wsp 180 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---------------------AKELPDVLER-VKFSCMAWTH 180 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT---------------------TEEEEEEEEE-ECSCCEEECT
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC---------------------CCCCcccccC-cccceEEEEe
Confidence 4456889999999954444444344 899999987 2222211111 1366899999
Q ss_pred CCCCeEEEEeCCCe----------------EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-----C
Q 039302 244 VAPGRLVSGDCNSC----------------IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-----D 302 (479)
Q Consensus 244 ~~~~~l~sg~~dg~----------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----d 302 (479)
++. .|+.++.++. |++|++.++............|...+..+.|+|+++ .|+.++. +
T Consensus 181 Dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 181 DGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPV 258 (710)
T ss_dssp TSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSC
T ss_pred CCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCc
Confidence 998 7888777765 999999775421111112223455688999999999 5555543 5
Q ss_pred CcEEEEEcCC------CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCC-
Q 039302 303 GNIAIWDTRV------GKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKH- 372 (479)
Q Consensus 303 g~I~iwD~~~------~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~- 372 (479)
..|.+||+.+ +......+..+...+.. .|+|++..+++.+..+ +.|.+||+.+... .....+..|..
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~ 335 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHEK 335 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSS
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCCCCC
Confidence 6899999986 43235556666666655 5888884555554433 3699999987641 01344444544
Q ss_pred -CeEEEEEeCCCCCEEEEEeCCCc--EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCC
Q 039302 373 -PVTSIEWSPHEGSTLAVSSADNQ--LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449 (479)
Q Consensus 373 -~I~~v~~sp~~~~~las~s~Dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~ 449 (479)
.+.++.|++ ++.++++...|+. |.+|++..+.. ...+..+ ...|..++++|+
T Consensus 336 ~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~----------------------~~~l~~~--~~~v~~~~~s~d 390 (710)
T 2xdw_A 336 DVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL----------------------LKIFPLE--VGSVVGYSGQKK 390 (710)
T ss_dssp CEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE----------------------EEEECCC--SSEEEEEECCTT
T ss_pred CeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE----------------------EEecCCC--CceEEEEecCCC
Confidence 688899996 4478888888885 55566644320 0112222 235888999998
Q ss_pred CCcEEEEEcCCC----ceEEeee
Q 039302 450 VPGMIVSTAADG----FNILMPS 468 (479)
Q Consensus 450 ~~~ll~s~~~dg----i~iw~~~ 468 (479)
+..++++.+... +.+|++.
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETT
T ss_pred CCEEEEEEeCCCCCCEEEEEECC
Confidence 876666544432 5666653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=132.58 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=145.6
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE--------------
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA-------------- 238 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------- 238 (479)
..+.|+|++ ..|+..+.++.|++||+... +....+..+......
T Consensus 84 ~~~~~spdg-~~l~~~~~~~~l~~~d~~~~---------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 141 (396)
T 3c5m_A 84 FGGFISTDE-RAFFYVKNELNLMKVDLETL---------------------EEQVIYTVDEEWKGYGTWVANSDCTKLVG 141 (396)
T ss_dssp TTCEECTTS-SEEEEEETTTEEEEEETTTC---------------------CEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred ccceECCCC-CEEEEEEcCCcEEEEECCCC---------------------CcEEEEecccccCCCCCEEEeccCCcccc
Confidence 347899999 56666688889999998762 222222222221111
Q ss_pred -----EEeCCCCCCeEEEE-----eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCC-----
Q 039302 239 -----IDWNPVAPGRLVSG-----DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVD----- 302 (479)
Q Consensus 239 -----l~~s~~~~~~l~sg-----~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~d----- 302 (479)
++|+|++. .++.+ ..+..|++||+.++... .+..+...+..+.|+| ++. .|+.++.+
T Consensus 142 ~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~-----~~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 142 IEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELE-----VIHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLV 214 (396)
T ss_dssp EEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEE-----EEEEESSCEEEEEEETTEEE-EEEEEECSCSSSC
T ss_pred ccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEE-----eeccCCcccccceECCCCCC-EEEEEecCCCCCC
Confidence 45788876 55543 45678999999775432 2234567789999999 666 56655543
Q ss_pred -CcEEEEEcCCCCceeeEEecC--CCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 303 -GNIAIWDTRVGKSALMSFKAH--NADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 303 -g~I~iwD~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
..|.+||+.... ...+..+ ...+..++|+|++ ..|+.++.+ +.|++||+.++. ... +.... ..
T Consensus 215 ~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~----~~~-l~~~~-~~ 285 (396)
T 3c5m_A 215 DARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLE----NEE-VMVMP-PC 285 (396)
T ss_dssp SCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCC----EEE-EEECC-SE
T ss_pred CceEEEEECCCCc--eeEeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCC----eEE-eeeCC-CC
Confidence 368888887653 2233223 2357889999999 555544433 449999998765 222 22112 23
Q ss_pred EEEEEeC-CCCCEEEEEe----------------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC
Q 039302 375 TSIEWSP-HEGSTLAVSS----------------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG 437 (479)
Q Consensus 375 ~~v~~sp-~~~~~las~s----------------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g 437 (479)
. +.|+| ++ .+|++++ .+..|++||+..... ..+..+..
T Consensus 286 ~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----------------------~~l~~~~~ 340 (396)
T 3c5m_A 286 S-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----------------------QKLCKHST 340 (396)
T ss_dssp E-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBC-----------------------CEEEECCC
T ss_pred C-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----------------------EEccCCCC
Confidence 3 89999 76 6777654 347899999876531 22333321
Q ss_pred C---------CCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 438 Q---------KDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 438 ~---------~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
. ..+..++|+|++..+++++..++ ..||.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 0 02567899999976666665555 6777654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-12 Score=119.83 Aligned_cols=239 Identities=9% Similarity=-0.036 Sum_probs=162.6
Q ss_pred ceeEEEEecCCCcEEE-EEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 171 CVNRIRAMSQNPHICA-SWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p~~~~~la-t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
....+++.+++ .+++ +.+.++.|.+|+.... ........+...+.+|++.+++. ++
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~p~~i~~~~~g~-l~ 81 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGST---------------------GTTVLPFNGLYQPQGLAVDGAGT-VY 81 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC--------------------------EECCCCSCCSCCCEEECTTCC-EE
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCc---------------------ccceEeeCCcCCcceeEECCCCC-EE
Confidence 67889999998 5776 5477889999987551 11111112334678899999876 66
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++.. ++.|.+|+......... .......+.++++++++. ++++...++.|.+|+..+.. ...........++.
T Consensus 82 v~~~-~~~i~~~d~~~~~~~~~----~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 82 VTDF-NNRVVTLAAGSNNQTVL----PFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDG 154 (270)
T ss_dssp EEET-TTEEEEECTTCSCCEEC----CCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCC
T ss_pred EEcC-CCEEEEEeCCCceEeee----ecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce-eEeeccccCCCcee
Confidence 6555 88999999865432211 112235689999999987 88887778999999766543 21112223346788
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHH
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEE 409 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~ 409 (479)
+++++++ .++++...++.|.+||..... .......+...+.+|++++++ .++++...++.|.+|+......
T Consensus 155 i~~~~~g-~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~--- 225 (270)
T 1rwi_B 155 VAVDNSG-NVYVTDTDNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS--- 225 (270)
T ss_dssp EEECTTC-CEEEEEGGGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC---
T ss_pred EEEeCCC-CEEEEECCCCEEEEEecCCCc----eEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc---
Confidence 9999988 788887778999999987654 333223334678999999965 8888888889999999865421
Q ss_pred HHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 410 EAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
......+...+.+++++|++. ++++...++ |.+|++..-
T Consensus 226 ---------------------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 226 ---------------------TVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ---------------------EECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred ---------------------eeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence 111112224689999999985 777776666 888877654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=125.62 Aligned_cols=243 Identities=9% Similarity=0.056 Sum_probs=160.0
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|+++.|++.+ ..++..+.++.++.|. ......+..+...+.+++|++++. ++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~g~-l~ 59 (333)
T 2dg1_A 6 QDLPTLFYSGKS-NSAVPIISESELQTIT------------------------AEPWLEISKKGLQLEGLNFDRQGQ-LF 59 (333)
T ss_dssp CCCCBCCSCGGG-GCSSCCCCGGGSCEEE------------------------CEEEEEEESSCCCEEEEEECTTSC-EE
T ss_pred cccceeeecCCc-cceeEEeecccCcccc------------------------cceeEEEeccCccccCcEECCCCC-EE
Confidence 457888899987 4455557788888882 233455666667789999999987 77
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCceeeEEe--cC
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----GNIAIWDTRVGKSALMSFK--AH 323 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~I~iwD~~~~~~~~~~~~--~h 323 (479)
+++..++.|.+||..++..... ...+...+.+++|+|++. ++++...+ +.|.+||..+... ...+. .+
T Consensus 60 ~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~ 133 (333)
T 2dg1_A 60 LLDVFEGNIFKINPETKEIKRP----FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLST 133 (333)
T ss_dssp EEETTTCEEEEECTTTCCEEEE----EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSS
T ss_pred EEECCCCEEEEEeCCCCcEEEE----eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCcc
Confidence 7888899999999876543211 123457899999999997 77777666 6899999887642 21221 24
Q ss_pred CCCEEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 324 NADVNVISWNRLASCLLASGSD------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
...++.++++|++ .++++... .+.|..||..... +..+..+...+..++|+|++..++++.+.++.|.
T Consensus 134 ~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 134 AYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT-----VTPIIQNISVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp CCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC-----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred CCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCE-----EEEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence 4679999999998 77776553 3566667665433 2223233446789999996633556666788999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC-CCceEEee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA-DGFNILMP 467 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~-dgi~iw~~ 467 (479)
+|++....... ............++..+..+++++++. +.+++.. ++|.+|++
T Consensus 208 ~~d~~~~g~~~----------------~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 208 RIALEDDGVTI----------------QPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEECTTSSSE----------------EEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT
T ss_pred EEEecCCCcCc----------------ccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECC
Confidence 99986421100 000001111112223578899999986 5555544 44888875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=116.51 Aligned_cols=199 Identities=11% Similarity=0.090 Sum_probs=142.6
Q ss_pred CCcceeEEEEe-cCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCC
Q 039302 168 HQGCVNRIRAM-SQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPV 244 (479)
Q Consensus 168 H~~~V~~v~~~-p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~ 244 (479)
|...+..+++. +++ .++++... ++.|.+|+... +.+..+. .+...+.+++++++
T Consensus 75 ~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g----------------------~~~~~~~~~~~~~~~~i~~~~~ 131 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQYG----------------------QFVRKFGATILQHPRGVTVDNK 131 (286)
T ss_dssp CBSSEEEEEEETTTT-EEEEEECGGGCEEEEECTTS----------------------CEEEEECTTTCSCEEEEEECTT
T ss_pred cccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCCC----------------------cEEEEecCccCCCceEEEEeCC
Confidence 44678899995 555 67776543 78999999433 3333443 23457899999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH- 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h- 323 (479)
+. ++++...++.|.+|+... ..... .....+...+.+|+++|++. ++++.+.++.|++||.... .+..+..+
T Consensus 132 g~-l~v~~~~~~~i~~~~~~g-~~~~~--~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~--~~~~~~~~g 204 (286)
T 1q7f_A 132 GR-IIVVECKVMRVIIFDQNG-NVLHK--FGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ--YLRQIGGEG 204 (286)
T ss_dssp SC-EEEEETTTTEEEEECTTS-CEEEE--EECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC--EEEEESCTT
T ss_pred CC-EEEEECCCCEEEEEcCCC-CEEEE--eCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC--EEEEEccCC
Confidence 86 788777889999999643 22111 11113445689999999987 8888888999999998543 34444333
Q ss_pred -CCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCCCCCceEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 324 -NADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKGGDSVVAHFEYHKH--PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 324 -~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~~~~~~~~~~~~~~h~~--~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
...+..|++++++ .++++...++ .|.+||.. +. .+..+..+.. .+.+++++|++ .++++ +.|++|++|
T Consensus 205 ~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~----~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 205 ITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQ----LISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIY 276 (286)
T ss_dssp TSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SC----EEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEE
T ss_pred ccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CC----EEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEE
Confidence 3678999999998 8888888776 99999953 33 5666665443 47899999965 76666 579999999
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
++...
T Consensus 277 ~~~~~ 281 (286)
T 1q7f_A 277 RYVQL 281 (286)
T ss_dssp ECSCC
T ss_pred Ecccc
Confidence 98654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-11 Score=120.84 Aligned_cols=247 Identities=11% Similarity=0.023 Sum_probs=153.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG--- 231 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 231 (479)
.+..+..+ .++++|++..+.++.. .++.|.+||..+ .+.+.++..
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t---------------------~~~~~~i~~~~~ 102 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK---------------------LTFEKEISLPPK 102 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT---------------------CCEEEEEEECTT
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC---------------------CcEEEEEEcCcc
Confidence 34445444 8999999955555432 367899999876 344444432
Q ss_pred ---CCCceEEEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 232 ---HKDEGYAIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 232 ---h~~~v~~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
+......++++|+++ +|+++.. +++|.+||+.+.+.. ..+..+. ....+.+.|.+...+++.+.||.+.
T Consensus 103 ~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~----~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~ 176 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYV----EDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLL 176 (361)
T ss_dssp BCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEE----EEEGGGT-TEEEEEECTTSSSEEEEEETTSSEE
T ss_pred ccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEE----EEEecCC-CcceeEEcCCCCeeEEEECCCCcEE
Confidence 224567899999998 8887763 689999999875331 1101111 2233667888766899999999999
Q ss_pred EEEcCCCCceeeE------EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------C---
Q 039302 307 IWDTRVGKSALMS------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------K--- 371 (479)
Q Consensus 307 iwD~~~~~~~~~~------~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~--- 371 (479)
+|++......... +..+...+ .+.+.+++ ..++..+.++.|.++|+..... ..+..+... .
T Consensus 177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~ 252 (361)
T 2oiz_A 177 TINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWV 252 (361)
T ss_dssp EEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCE
T ss_pred EEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccc
Confidence 9998763322211 11222222 23345666 4566667889999999976542 122222110 0
Q ss_pred -CCeEEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCC
Q 039302 372 -HPVTSIEWSPHEGSTLAVSS----------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKD 440 (479)
Q Consensus 372 -~~I~~v~~sp~~~~~las~s----------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~ 440 (479)
.....++|+|++..++++.+ ..+.|.+||+.+.+ .+.....+.
T Consensus 253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-------------------------~v~~i~~~~- 306 (361)
T 2oiz_A 253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-------------------------RVARIPGRD- 306 (361)
T ss_dssp ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-------------------------EEEEEECTT-
T ss_pred cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-------------------------EEEEEecCC-
Confidence 11123789997655555444 13489999998773 232223334
Q ss_pred eeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 441 LKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+.+++|+|++..++ +++.+.|.+|++.+.
T Consensus 307 p~~ia~spdg~~l~-v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 ALSMTIDQQRNLML-TLDGGNVNVYDISQP 335 (361)
T ss_dssp CCEEEEETTTTEEE-EECSSCEEEEECSSS
T ss_pred eeEEEECCCCCEEE-EeCCCeEEEEECCCC
Confidence 99999999998554 444555999987654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=133.97 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=125.8
Q ss_pred eeEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-eEEEEeCCCCCCe
Q 039302 172 VNRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-GYAIDWNPVAPGR 248 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~~ 248 (479)
+..++|+|+|..++++...+| .|.+||+.. .+. ..+..+... ...+.|+|++. +
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~---------------------~~~-~~l~~~~~~~~~~~~~spdg~-~ 94 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET---------------------QQA-VQLTEGKGDNTFGGFISTDER-A 94 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---------------------TEE-EECCCSSCBCTTTCEECTTSS-E
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC---------------------CcE-EEeecCCCCccccceECCCCC-E
Confidence 788999999966565554444 677788765 222 222223223 33478999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEE-------------------EEECCCCCcEEEEE-----eCCCc
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED-------------------LQWSPTESDVFASC-----SVDGN 304 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~~l~s~-----s~dg~ 304 (479)
|+.++.++.|++|++.++....+ +..+.....+ +.|+|+++ .++.+ ..+..
T Consensus 95 l~~~~~~~~l~~~d~~~~~~~~~----~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 95 FFYVKNELNLMKVDLETLEEQVI----YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCR 169 (396)
T ss_dssp EEEEETTTEEEEEETTTCCEEEE----EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEE
T ss_pred EEEEEcCCcEEEEECCCCCcEEE----EecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcce
Confidence 99999899999999977543211 1112222222 35677777 44333 45678
Q ss_pred EEEEEcCCCCceeeEEecCCCCEEEEEEcC-CCCcEEEEEeCC------CeEEEEeCCCCCCCCceEEEeecC--CCCeE
Q 039302 305 IAIWDTRVGKSALMSFKAHNADVNVISWNR-LASCLLASGSDD------GTFSIHDLRLLKGGDSVVAHFEYH--KHPVT 375 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~d------g~i~iwDlr~~~~~~~~~~~~~~h--~~~I~ 375 (479)
|.+||+.+++ ...+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+.... ...+..+ ...+.
T Consensus 170 l~~~d~~~g~--~~~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 170 LIKVDIETGE--LEVIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCT 241 (396)
T ss_dssp EEEEETTTCC--EEEEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEE
T ss_pred EEEEECCCCc--EEeeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCcccc
Confidence 9999998875 233345677899999999 66 656555543 368888986544 2233333 23578
Q ss_pred EEEEeCCCCCEEEEEeCC-----CcEEEEECCCC
Q 039302 376 SIEWSPHEGSTLAVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~D-----g~I~iwdl~~~ 404 (479)
.+.|+|++ ..|+.++.+ +.|++||+...
T Consensus 242 ~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 242 HEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EEEECTTS-SCEEEEEEETTTCCEEEEEECTTTC
T ss_pred ceEECCCC-CEEEEEecCCCCccceEEEEECCCC
Confidence 89999976 555555433 34999999765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-12 Score=122.84 Aligned_cols=222 Identities=9% Similarity=0.061 Sum_probs=138.9
Q ss_pred cceeEEEEecCCCcEEEEEeCC--ce--EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADT--GH--VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~d--g~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
..+..++|+|+|..++.+.... +. |++|++.. ++...... +.. +..++|+|++
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~---------------------g~~~~l~~-~~~-~~~~~wspdg 115 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET---------------------LSSKKILE-AKN-IRSLEWNEDS 115 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT---------------------TEEEEEEE-ESE-EEEEEECTTS
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC---------------------CceEEEEc-CCC-ccceeECCCC
Confidence 5788999999995454443322 33 67777765 22222222 223 8999999999
Q ss_pred CCeEEEEeCC---------------------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE
Q 039302 246 PGRLVSGDCN---------------------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS 298 (479)
Q Consensus 246 ~~~l~sg~~d---------------------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 298 (479)
. .|+.++.+ ..|++|++.++.... .+.. . .+..++|+|++ ++++
T Consensus 116 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~----~l~~-~-~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 116 R-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE----EFEK-P-RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp S-EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE----EEEE-E-TTCEEEEETTE--EEEE
T ss_pred C-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe----eecC-C-CcccccCCCCe--EEEE
Confidence 8 77777632 578999987653301 1222 2 67889999998 6666
Q ss_pred EeCCC-------cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCCCCCce
Q 039302 299 CSVDG-------NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 299 ~s~dg-------~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr~~~~~~~~ 363 (479)
++.++ ...||.+.++ ....+..+ ..+..+ +|++ ..|+.++.+ ..|.+|| ++. .
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~--~~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~----~ 254 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDG--KEEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKE----V 254 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETT--EEEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSC----E
T ss_pred EecccccccccccccEEEeCCC--ceEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCc----e
Confidence 65542 4455555433 23334334 445544 8999 556555533 4688888 333 4
Q ss_pred EEEeecCCCCeEE-EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCee
Q 039302 364 VAHFEYHKHPVTS-IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLK 442 (479)
Q Consensus 364 ~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~ 442 (479)
......|...+.. +.|+ + + ++++++.++.++|| +..+ +......+...|.
T Consensus 255 ~~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g-------------------------~~~~~~~~~~~v~ 305 (347)
T 2gop_A 255 MGILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDG-------------------------EIKPIAKGRHWIM 305 (347)
T ss_dssp EESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESS-------------------------SEEEEECSSSEEE
T ss_pred EeccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCC-------------------------ceEEEecCCCeEE
Confidence 4444556778886 9998 4 4 88899999999999 8732 1122222335699
Q ss_pred eEEEeCCCCcEEEEEcCCC--ceEEee
Q 039302 443 ELHWHTQVPGMIVSTAADG--FNILMP 467 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg--i~iw~~ 467 (479)
+++|+| . ++++++.++ ..+|..
T Consensus 306 ~~~~s~--~-~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 306 GFDVDE--I-VVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEESS--S-EEEEEECSSSCCEEEEE
T ss_pred eeeeeC--c-EEEEEcCCCChHHheEe
Confidence 999999 3 555555444 377765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-12 Score=120.60 Aligned_cols=207 Identities=15% Similarity=0.120 Sum_probs=150.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe---------cCCCCceE
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF---------GGHKDEGY 237 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~ 237 (479)
++-...+.|++.|++ .++++.+.++.|++|+.... ...+..+ .++-....
T Consensus 88 ~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~--------------------~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSK--------------------EGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCS--------------------SCCSEEESBTTBCCCSTTCCSSEE
T ss_pred CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCC--------------------eEEEEEecccCCCCCCccccCCCc
Confidence 344678999999999 58888888999999998652 1133333 23445788
Q ss_pred EEEeCC-CCCCeEEEEe-CCCeEEEEecCCCCccccCCCC------cccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 238 AIDWNP-VAPGRLVSGD-CNSCIHLWEPASDATWNVDPNP------FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 238 ~l~~s~-~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~------~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
+|+++| ++. ++++.+ .++.|++|+.. +......... ..++-.....|+++|++..++++...++.|++||
T Consensus 147 ~ia~~~~~g~-lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~ 224 (329)
T 3fvz_A 147 DVAVEPSTGA-VFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK 224 (329)
T ss_dssp EEEECTTTCC-EEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCe-EEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEE
Confidence 999999 565 777765 68999999953 3321110000 0122345899999999554888888999999999
Q ss_pred cCCCCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEe-------CCCeEEEEeCCCCCCCCceEEEe---ecCCCCeEEE
Q 039302 310 TRVGKSALMSF--KAHNADVNVISWNRLASCLLASGS-------DDGTFSIHDLRLLKGGDSVVAHF---EYHKHPVTSI 377 (479)
Q Consensus 310 ~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs-------~dg~i~iwDlr~~~~~~~~~~~~---~~h~~~I~~v 377 (479)
..+++ .+..+ ..+...+..++|+| + .++++.+ .+..|++||+.+++ .+..+ ..+...+..|
T Consensus 225 ~~~G~-~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~----~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 225 TDTKE-FVREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGE----IIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp TTTCC-EEEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCC----EEEEECCSSSCCSSEEEE
T ss_pred CCCCc-EEEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCe----EEEEEcCCCCccCCeeEE
Confidence 98664 45554 34567789999999 4 4444443 34589999999887 67776 3577789999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+++|++ .++++...+++|++|++...
T Consensus 298 a~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 298 VASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred EECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 999966 89999999999999998643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-12 Score=135.21 Aligned_cols=247 Identities=9% Similarity=-0.045 Sum_probs=153.7
Q ss_pred cCCcceeEEEEecCCCcEEEEE----eCCceEEEEeCCCCcccccccccccCCCCCccccCCCc-E-EecCCCCceEEEE
Q 039302 167 AHQGCVNRIRAMSQNPHICASW----ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-V-KFGGHKDEGYAID 240 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~l~ 240 (479)
+|...+..++|+|+|..++.+. +.+.+|++||+.+. +.+ . .+... ....++
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg---------------------~~~~~~~~~~~--~~~~~~ 174 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG---------------------EWSKVDVIEGG--KYATPK 174 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC---------------------CBCSSCCBSCC--TTCCCE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC---------------------CCcCCcccCcc--cccceE
Confidence 4666799999999995444443 33468999999872 221 0 11111 126799
Q ss_pred eCCCCCCeEEEEeCCCe-------------EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC----
Q 039302 241 WNPVAPGRLVSGDCNSC-------------IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG---- 303 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~-------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---- 303 (479)
|+|++. .|+.++.+.. |++|++.++............|...+..+.|+|+|+ .++.++.++
T Consensus 175 wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 175 WTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSEN 252 (695)
T ss_dssp ECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEE
T ss_pred EecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCce
Confidence 999998 8888887766 999999875431111122334556789999999998 555544444
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCCCceEEEeec-C-CCCeEEEE
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKGGDSVVAHFEY-H-KHPVTSIE 378 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~~~~~~~~~~-h-~~~I~~v~ 378 (479)
.|.+||..++ ....+..+...+....| +++. +++++. .++.|.+||+.+... .....+.. + ...|.+++
T Consensus 253 ~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 253 DVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR--ASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp EEEEECTTCS--SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG--GGCEEEECCCSSCEEEEEE
T ss_pred EEEEEcCCCC--ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc--cCCeEEecCCCCCeEEEEE
Confidence 5666655443 34455556666666667 5664 555544 257899999977541 01233333 3 45688899
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
|+ ++.++++...|+..+||.+...... ...+..+ +...|..++++|++..++++.+
T Consensus 327 ~~--~~~lv~~~~~dg~~~l~~~~~~g~~---------------------~~~l~~~-~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 327 IV--GGHLSLEYLKDATSEVRVATLKGKP---------------------VRTVQLP-GVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp EE--TTEEEEEEEETTEEEEEEEETTCCE---------------------EEECCCS-SSSEECCCBSCTTCSEEEEEEE
T ss_pred EE--CCEEEEEEEECCEEEEEEEeCCCCe---------------------eEEecCC-CCeEEEEeecCCCCCEEEEEEc
Confidence 98 4488999999999888876532110 0011111 1234777888898876665554
Q ss_pred CCC----ceEEeee
Q 039302 459 ADG----FNILMPS 468 (479)
Q Consensus 459 ~dg----i~iw~~~ 468 (479)
... |.+|++.
T Consensus 383 s~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 383 SFTTPRQIYKTSVS 396 (695)
T ss_dssp ETTEEEEEEEEETT
T ss_pred CCCCCCEEEEEECC
Confidence 432 6666653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-11 Score=112.05 Aligned_cols=248 Identities=9% Similarity=0.066 Sum_probs=158.0
Q ss_pred ecCCcceeEEEEecCCCcEEEE-------EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-----CCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICAS-------WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-----GHK 233 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat-------~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~ 233 (479)
...-....+++|.+++ .++++ +..++.|.+||.... +. ..+. ++.
T Consensus 14 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g---------------------~~-~~~~~~~~~~~~ 70 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTG---------------------KK-TVICKPEVNGYG 70 (314)
T ss_dssp ECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTC---------------------CE-EEEECCEETTEE
T ss_pred hccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCC---------------------cE-EEEEecccCCCC
Confidence 3444567899999888 67766 567789999997651 11 1121 244
Q ss_pred CceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEeCC---------
Q 039302 234 DEGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCSVD--------- 302 (479)
Q Consensus 234 ~~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--------- 302 (479)
..+.+++++++ + .|..++..+.|.+|+.. +..... ...........+.++++++++. ++++...+
T Consensus 71 ~~~~~i~~~~~~g--~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 71 GIPAGCQCDRDAN--QLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTR 146 (314)
T ss_dssp CCEEEEEECSSSS--EEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCB
T ss_pred CCCceEEEecCCC--cEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccc
Confidence 57899999998 5 45555545589999987 433211 0000011224588999999987 66666554
Q ss_pred ------CcEEEEEcCCCCceeeEEecCCCCEEEEEEc----CCCCcEEEEEeCCCeEEEEeCC-CCCCC-CceEEEeecC
Q 039302 303 ------GNIAIWDTRVGKSALMSFKAHNADVNVISWN----RLASCLLASGSDDGTFSIHDLR-LLKGG-DSVVAHFEYH 370 (479)
Q Consensus 303 ------g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~l~sgs~dg~i~iwDlr-~~~~~-~~~~~~~~~h 370 (479)
+.|..||.. ++ ...+..+....+.++|+ |++..++++...++.|.+||+. .+... ......+..+
T Consensus 147 ~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp TTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 567777665 32 22333334557899999 9884455666678999999976 22200 0022333334
Q ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCC
Q 039302 371 K-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449 (479)
Q Consensus 371 ~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~ 449 (479)
. ..+..+++++++ .++++...++.|.+||..+.... ..+ ..+...+.+++|+|+
T Consensus 224 ~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~----------------------~~~--~~~~~~~~~i~~~~d 278 (314)
T 1pjx_A 224 HEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPK----------------------MRI--RCPFEKPSNLHFKPQ 278 (314)
T ss_dssp SSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCS----------------------EEE--ECSSSCEEEEEECTT
T ss_pred CCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEe----------------------EEE--eCCCCCceeEEECCC
Confidence 3 567899999965 88888878899999998754210 111 122256899999999
Q ss_pred CCcEEEEEcCCC-ceEEeee
Q 039302 450 VPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 450 ~~~ll~s~~~dg-i~iw~~~ 468 (479)
+..+.+++..++ |..|++.
T Consensus 279 g~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 279 TKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEeCCCCeEEEEeCC
Confidence 865666666544 7777764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-10 Score=116.61 Aligned_cols=259 Identities=11% Similarity=0.053 Sum_probs=169.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC----
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN---- 242 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---- 242 (479)
.....+..+.++|++. ++.+++.++.|.+||+... ..+.+.++... .....++|+
T Consensus 194 ~~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~-------------------t~~~v~~i~~G-~~P~~ia~s~~~~ 252 (567)
T 1qks_A 194 DTGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMK-------------------EPTTVAEIKIG-SEARSIETSKMEG 252 (567)
T ss_dssp ECSSCEEEEEECTTSC-EEEEEETTSEEEEEETTSS-------------------SCCEEEEEECC-SEEEEEEECCSTT
T ss_pred eCCCCccceEECCCCC-EEEEEcCCCeEEEEECCCC-------------------CCcEeEEEecC-CCCceeEEccccC
Confidence 3444677999999995 5556688999999999510 13445555543 346799999
Q ss_pred CCCCCeEEEE-eCCCeEEEEecCCCCccccCC-CC--cc---cCCC-cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 243 PVAPGRLVSG-DCNSCIHLWEPASDATWNVDP-NP--FI---GHAA-SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 243 ~~~~~~l~sg-~~dg~I~lwd~~~~~~~~~~~-~~--~~---~h~~-~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
|+++ +++++ ..+++|.++|..+........ .. .. .|.. .+..+..++.+..++++...+|.|.++|.....
T Consensus 253 pDGk-~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 253 WEDK-YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp CTTT-EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCC-EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 6988 55554 456899999987754422111 10 11 1222 688899999888667777778999999998764
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-----CCCCeEEEEEeCCCCCEEEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-----HKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-----h~~~I~~v~~sp~~~~~las 389 (479)
...............+.|+|++..++++...++.|.++|+.+.+ .+..+.. |.+.-..+ ++|.++.++++
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t 406 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----LVAIEDTGGQTPHPGRGANF-VHPTFGPVWAT 406 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc----EEEEEeccCcCCCCccceee-ECCCCCcEEEe
Confidence 32222223345577889999995556666678999999999876 5555543 43322222 58866566666
Q ss_pred Ee-CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEc-------CC
Q 039302 390 SS-ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTA-------AD 460 (479)
Q Consensus 390 ~s-~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~-------~d 460 (479)
+. .++.|.++|....+.. ....+.+....+. ..-..++.||+++++.++.. .+
T Consensus 407 ~~~g~~~Vsvid~~~~~~~------------------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHP------------------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp EBSSSSEEEEEECCTTTCT------------------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred CCCCCCeEEEecCCCCCCc------------------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 64 4689999999874211 0011222222222 23355788999998888773 23
Q ss_pred CceEEeeecc
Q 039302 461 GFNILMPSNI 470 (479)
Q Consensus 461 gi~iw~~~~~ 470 (479)
.|.||++.++
T Consensus 469 ~v~v~d~~~~ 478 (567)
T 1qks_A 469 SVAVFDIKAM 478 (567)
T ss_dssp CEEEEEGGGC
T ss_pred eEEEEECCcc
Confidence 5999998876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-10 Score=108.87 Aligned_cols=243 Identities=6% Similarity=-0.012 Sum_probs=164.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..+...+.++.+.+++ .+.++...++.|.+||..... ....+..+...+.++++.+
T Consensus 9 ~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~~~---------------------~~~~~~~~~~~~~~i~~~~ 66 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKG-KVWITQHKANMISCINLDGKI---------------------TEYPLPTPDAKVMCLTISS 66 (299)
T ss_dssp ECCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE---------------------EEEECSSTTCCEEEEEECT
T ss_pred cCCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCCCCe---------------------EEecCCcccCceeeEEECC
Confidence 444556789999999998 566665667899999976310 0111122346789999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
++. ++++...++.|..|+.. +..... ........+.++++.+++. ++++...++.|.+||. ++..........
T Consensus 67 ~g~-l~v~~~~~~~i~~~~~~-g~~~~~---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~ 139 (299)
T 2z2n_A 67 DGE-VWFTENAANKIGRITKK-GIIKEY---TLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNK 139 (299)
T ss_dssp TSC-EEEEETTTTEEEEECTT-SCEEEE---ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred CCC-EEEeCCCCCeEEEECCC-CcEEEE---eCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCC
Confidence 886 77776668899999975 222111 1112345789999999887 7777777889999998 443222222334
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE-EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA-HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~-~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...++.+++.+++ .++++...++.|.+||. ++. ... .+..+...+.++++++++ .++++...++.|.+||.
T Consensus 140 ~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~----~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~- 211 (299)
T 2z2n_A 140 GSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGD----ITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT- 211 (299)
T ss_dssp TCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCC----EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-
T ss_pred CCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCc----EEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-
Confidence 5678999999998 78887777889999998 444 222 233345678899999965 77777777889999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE-cCCCceEEee
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST-AADGFNILMP 467 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~-~~dgi~iw~~ 467 (479)
.... ..+....+...+.++++++++. +.++. +.++|.+|++
T Consensus 212 ~g~~-----------------------~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 212 SGEI-----------------------TEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS 253 (299)
T ss_dssp TCCE-----------------------EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred CCcE-----------------------EEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence 4320 1111112234688999999985 66665 4455888875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-10 Score=106.33 Aligned_cols=241 Identities=6% Similarity=-0.058 Sum_probs=162.1
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
+...+..+++.+++ .+.++...++.|..|+..... ....+......+.++++.+++.
T Consensus 55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~---------------------~~~~~~~~~~~~~~i~~~~~g~- 111 (299)
T 2z2n_A 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKGII---------------------KEYTLPNPDSAPYGITEGPNGD- 111 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE---------------------EEEECSSTTCCEEEEEECTTSC-
T ss_pred ccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCcE---------------------EEEeCCCcCCCceeeEECCCCC-
Confidence 45778999999988 577676668889999875310 0111222345788999999886
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
++++...++.|.+|+. ++..... ....+...+.++++.+++. ++++...++.|..||. +++............+
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREY---ELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGP 185 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEE---ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEEecCCceEEEECC-CCCEEEe---cCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcc
Confidence 7777667889999998 4332211 1122345789999999987 7777777889999998 5532211123345668
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
..+++++++ .++++...++.|.+||. +... .......+...+.++++++++ .++++...++.|.+||.. ...
T Consensus 186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~~- 257 (299)
T 2z2n_A 186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEI---TEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN-NII- 257 (299)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETT-TEE-
T ss_pred eeEEECCCC-CEEEEccCCceEEEECC-CCcE---EEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECCC-Cce-
Confidence 899999988 77777777889999998 5441 122233355678999999965 777776678899999983 210
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
..+....+...+.++++ +++. +.+++..+++..+++.+
T Consensus 258 ----------------------~~~~~~~~~~~~~~i~~-~~g~-l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 258 ----------------------EEYPIQIKSAEPHGICF-DGET-IWFAMECDKIGKLTLIK 295 (299)
T ss_dssp ----------------------EEEECSSSSCCEEEEEE-CSSC-EEEEETTTEEEEEEEC-
T ss_pred ----------------------EEEeCCCCCCccceEEe-cCCC-EEEEecCCcEEEEEcCc
Confidence 11111122246899999 7774 66666666677776643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-10 Score=107.07 Aligned_cols=242 Identities=10% Similarity=0.008 Sum_probs=158.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+..-.-+..|+|++..++++....+.|+.||... .. ...+. ....+.++++++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~---------------------~~-~~~~~-~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT---------------------KQ-VQRVT-MDAPVSSVALRQSGG 66 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTT---------------------CC-EEEEE-CSSCEEEEEEBTTSS
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCC---------------------Cc-EEEEe-CCCceEEEEECCCCC
Confidence 34445668899997768888888899999999876 12 12232 345789999999986
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCcee
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV---------DGNIAIWDTRVGKSAL 317 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~~~~~~ 317 (479)
+++ +. ++.|.+||..++................+++++++|++. ++++... ...-.||.+.... .+
T Consensus 67 -l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~ 141 (297)
T 3g4e_A 67 -YVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-HV 141 (297)
T ss_dssp -EEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-CE
T ss_pred -EEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-CE
Confidence 444 44 568999998764332111111111234689999999998 5555432 1334566554332 22
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCCCC-CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR--LLKGG-DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr--~~~~~-~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
..+..+....+.++|+|++..++++.+.++.|.+||+. ++... ...+..+..+...+..+++++++ ++.++....+
T Consensus 142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~ 220 (297)
T 3g4e_A 142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGG 220 (297)
T ss_dssp EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTT
T ss_pred EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCC
Confidence 23333445578999999995566777888999999974 33200 01223333344567899999965 8888887888
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG 461 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg 461 (479)
.|.+||..+++ .+.....+...+++++|. |++..|.++++..+
T Consensus 221 ~v~~~d~~tG~------------------------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 221 RVIRLDPVTGK------------------------RLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEEEECTTTCC------------------------EEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred EEEEEcCCCce------------------------EEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 99999987653 122223333469999999 88877888877654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-11 Score=126.01 Aligned_cols=204 Identities=7% Similarity=-0.056 Sum_probs=136.9
Q ss_pred eeEEEEecCCCcEEEEEeCCce----------------EEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCC
Q 039302 172 VNRIRAMSQNPHICASWADTGH----------------VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHK 233 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~----------------V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~ 233 (479)
+..+.|+|++..++ .++.++. |++|++.+.. ......+. .|.
T Consensus 173 ~~~~~wspDg~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-------------------~~~~~v~~~~~~~ 232 (710)
T 2xdw_A 173 FSCMAWTHDGKGMF-YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-------------------SEDILCAEFPDEP 232 (710)
T ss_dssp SCCEEECTTSSEEE-EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-------------------GGCEEEECCTTCT
T ss_pred cceEEEEeCCCEEE-EEEECCccccccccccccCCCCEEEEEECCCCc-------------------ccceEEeccCCCC
Confidence 67899999995454 4455554 9999997621 11122222 345
Q ss_pred CceEEEEeCCCCCCeEEEEeC-----CCeEEEEecCC------CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDC-----NSCIHLWEPAS------DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~-----dg~I~lwd~~~------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
..+..+.|+|++. +|+.++. +..|++||+.+ +... ...+..+...+.. .|+|++..+++.+..+
T Consensus 233 ~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 233 KWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILK---WVKLIDNFEGEYD-YVTNEGTVFTFKTNRH 307 (710)
T ss_dssp TCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC---CEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred eEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCccc---eEEeeCCCCcEEE-EEeccCCEEEEEECCC
Confidence 5678999999998 7777654 56899999975 3210 1234445555554 4888888444444333
Q ss_pred ---CcEEEEEcCCCCc-eeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 303 ---GNIAIWDTRVGKS-ALMSFKAHNA--DVNVISWNRLASCLLASGSDDGT--FSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 303 ---g~I~iwD~~~~~~-~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
+.|.+||+.++.. ....+..|.. .+..++|++.+ .++++...++. |.+||+.+++ .+..+..+.+.|
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~----~~~~l~~~~~~v 382 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA----LLKIFPLEVGSV 382 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC----EEEEECCCSSEE
T ss_pred CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC----EEEecCCCCceE
Confidence 3699999987642 2344545544 68889999766 88899988884 5667776655 567777788889
Q ss_pred EEEEEeCCCCCEEEEEeC---CCcEEEEECCCCC
Q 039302 375 TSIEWSPHEGSTLAVSSA---DNQLTIWDLSLEK 405 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~---Dg~I~iwdl~~~~ 405 (479)
..+.++|++..++++.+. .++|++||+.++.
T Consensus 383 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 999999966445544443 5789999997654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-10 Score=112.99 Aligned_cols=226 Identities=10% Similarity=0.071 Sum_probs=145.4
Q ss_pred cceeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~ 247 (479)
.....++++|++..++++... ++.|.+||+.. .+.+.+ +.. . ....+.+.|.+..
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~---------------------~~~~~~~i~~-~-~~~~v~~~p~~~~ 164 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK---------------------GDYVEDVTAA-A-GCWSVIPQPNRPR 164 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTT---------------------TEEEEEEGGG-T-TEEEEEECTTSSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCC---------------------CcEEEEEecC-C-CcceeEEcCCCCe
Confidence 457789999999655555433 68999999987 344444 332 1 2233667787755
Q ss_pred eEEEEeCCCeEEEEecCCCCccc-cC--CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-eEEec-
Q 039302 248 RLVSGDCNSCIHLWEPASDATWN-VD--PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL-MSFKA- 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~-~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~-~~~~~- 322 (479)
.+++.+.||.+.+|++...+... .. ...+.....++ .+.++|++. .++..+.++.|.++|+......+ ..+..
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 242 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLL 242 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC-EEEEEeCCCeEEEEEecCCCceeccccccc
Confidence 88889999999999986533211 00 01122222222 233456666 56666788999999997653211 11110
Q ss_pred -----C----CCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 323 -----H----NADVNVISWNRLASCLLASGS----------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 323 -----h----~~~v~~l~~~p~~~~~l~sgs----------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
+ ......++|+|++..++++.. ..+.|.+||+.+.+ .+.++..+. +.+|+|+|++
T Consensus 243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----~v~~i~~~~--p~~ia~spdg 316 (361)
T 2oiz_A 243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----RVARIPGRD--ALSMTIDQQR 316 (361)
T ss_dssp CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----EEEEEECTT--CCEEEEETTT
T ss_pred CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----EEEEEecCC--eeEEEECCCC
Confidence 0 011123689999855555544 13589999999988 788888877 8999999966
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe-ecCCCCeeeEEEeCCCC
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI-HQGQKDLKELHWHTQVP 451 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-h~g~~~V~~v~w~p~~~ 451 (479)
.+|++++. +.|.+||+.+..- +++.. .........++++|++.
T Consensus 317 -~~l~v~n~-~~v~v~D~~t~~l-----------------------~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 317 -NLMLTLDG-GNVNVYDISQPEP-----------------------KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -TEEEEECS-SCEEEEECSSSSC-----------------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred -CEEEEeCC-CeEEEEECCCCcc-----------------------eeeEEeccCCCCcEEEEecCCCC
Confidence 78888776 9999999987620 12222 22224678899999874
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=120.44 Aligned_cols=181 Identities=10% Similarity=0.055 Sum_probs=130.4
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.++.+++++.. .++++|+.++ +.+|++........... . ..++.... .+.. |+.|+| ++. .|+
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~----~------~~~~~~~~-~lp~-V~~l~f--d~~-~L~ 101 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDS----T------PLTFKWEK-EIPD-VIFVCF--HGD-QVL 101 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSS----C------CCCCSEEE-ECTT-EEEEEE--ETT-EEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhcccc----c------cccceEEe-eCCC-eeEEEE--CCC-EEE
Confidence 59999999988 6788888875 66699865332111000 0 02333333 3555 999999 665 888
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
++ .++.|++||+.+.... .....|...+.++.+.+. .+++++.||.|.+||+.... .. . +...|.|+
T Consensus 102 v~-~~~~l~v~dv~sl~~~----~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~-~~-~---~~~~Vs~v 168 (388)
T 1xip_A 102 VS-TRNALYSLDLEELSEF----RTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS-TK-Q---LAQNVTSF 168 (388)
T ss_dssp EE-ESSEEEEEESSSTTCE----EEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC-EE-E---EEESEEEE
T ss_pred EE-cCCcEEEEEchhhhcc----CccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCc-cc-c---ccCCceEE
Confidence 88 7899999999775431 234456778888887754 38889999999999999775 22 2 34589999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce--EEEe------e---cCCCCeEEEEEeCCCCCEEEE
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV--VAHF------E---YHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~--~~~~------~---~h~~~I~~v~~sp~~~~~las 389 (479)
+|+|.| ++.|..||.+++|+..... . ..++ . +|...|.+|.|.+++ .+|++
T Consensus 169 ~WSpkG---~~vg~~dg~i~~~~~~~~~----~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 169 DVTNSQ---LAVLLKDRSFQSFAWRNGE----MEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp EECSSE---EEEEETTSCEEEEEEETTE----EEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred EEcCCc---eEEEEcCCcEEEEcCCCcc----ccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 999988 6789999999999887654 2 4445 2 478899999999955 66665
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-11 Score=116.32 Aligned_cols=218 Identities=9% Similarity=0.113 Sum_probs=133.5
Q ss_pred cceeEEEEecCCCcEEEEEe--------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 170 GCVNRIRAMSQNPHICASWA--------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s--------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
..+..+++ +|..++.+.. .++.|++||+.. .+. ..+ ..+..++|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~---------------------~~~-~~l----~~~~~~~~ 66 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN---------------------NAR-RFI----ENATMPRI 66 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT---------------------CCE-EEE----ESCEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC---------------------Cce-EEc----ccCCCeEE
Confidence 34555666 6655544421 256789999876 222 233 46789999
Q ss_pred CCCCCCeEEEEeCC---C--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------------
Q 039302 242 NPVAPGRLVSGDCN---S--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--------------- 301 (479)
Q Consensus 242 s~~~~~~l~sg~~d---g--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--------------- 301 (479)
+|++. +|+.++.+ + .|.+|++.++... .+..+.. +..++|+|+++ .|+.++.
T Consensus 67 SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 67 SPDGK-KIAFMRANEEKKVSEIWVADLETLSSK-----KILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CTTSS-EEEEEEEETTTTEEEEEEEETTTTEEE-----EEEEESE-EEEEEECTTSS-EEEEEEECCCC---------CC
T ss_pred CCCCC-EEEEEEeccCCCcceEEEEECCCCceE-----EEEcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccc
Confidence 99998 88877643 3 4777787664321 1222334 99999999998 6666553
Q ss_pred ------------CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCCCCCc
Q 039302 302 ------------DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG-------TFSIHDLRLLKGGDS 362 (479)
Q Consensus 302 ------------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg-------~i~iwDlr~~~~~~~ 362 (479)
...|.+||+.++. .+..+.. . .+..++|+|++ +++++..++ ...||.+.++
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~-~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~----- 208 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEE-VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG----- 208 (347)
T ss_dssp CC---------CEEEEEEEETTTTE-EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-----
T ss_pred eeecCcccccCccceEEEEECCCCe-EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC-----
Confidence 2579999998875 3233433 3 78899999988 666665542 3444444422
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCC--------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD--------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI 434 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 434 (479)
....+..+ ..+..+ +|++ ..|+.++.+ ..|.+|| ... ....
T Consensus 209 ~~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~-------------------------~~~l 257 (347)
T 2gop_A 209 KEEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKE-------------------------VMGI 257 (347)
T ss_dssp EEEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSC-------------------------EEES
T ss_pred ceEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCc-------------------------eEec
Confidence 23344444 555554 8966 666665543 3677777 221 1111
Q ss_pred ecC-CCCeee-EEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 435 HQG-QKDLKE-LHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 435 h~g-~~~V~~-v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..+ ...+.. +.|+ ++ ++++++.++ ++|| +.
T Consensus 258 ~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 258 LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EE
T ss_pred cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-Ec
Confidence 122 235775 8998 65 777777776 8888 65
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-11 Score=126.33 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=150.5
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
|...+..++|+|+|..++.+.+..| .|++||+.. ++.+.. ..+...+..++|+|
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t---------------------g~~~~~-~~~~~~~~~~~wsp 218 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD---------------------GKPLAD-ELKWVKFSGLAWLG 218 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT---------------------CCEEEE-EEEEEESCCCEEST
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC---------------------CCCCCc-cCCCceeccEEEEC
Confidence 4457889999999955554444333 599999987 232221 11112235789999
Q ss_pred CCCCeEEEEeCCCe--------------EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----Cc
Q 039302 244 VAPGRLVSGDCNSC--------------IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GN 304 (479)
Q Consensus 244 ~~~~~l~sg~~dg~--------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~ 304 (479)
+ . .|+.++.++. |++|++.++............+...+..+.|+|+|+ .++..+.+ ..
T Consensus 219 D-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 219 N-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNT 295 (741)
T ss_dssp T-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCE
T ss_pred C-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcce
Confidence 9 7 7777766553 899998765421111111223334588999999999 55555543 38
Q ss_pred EEEEEcCCCCce-eeEEecCCCCEEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 305 IAIWDTRVGKSA-LMSFKAHNADVNVISWNRLASCLLASGSD----DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 305 I~iwD~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~----dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
|.+||+.++... ...+..+...+.... .|++ ..|+..+. ++.|.+||+.... ......+..+...+.++.|
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGI 371 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEE
Confidence 999999876222 445555555555543 4777 55555554 3459999987742 1133444555556778888
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEEc
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
+ ++.++++...|+..+||.+..... .+..... +...|..+.|+|++..++++.+
T Consensus 372 ~--~~~lv~~~~~dg~~~l~~~~~~g~-----------------------~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 372 A--GNRLFASYIHDAKSQVLAFDLDGK-----------------------PAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp E--BTEEEEEEEETTEEEEEEEETTSC-----------------------EEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred E--CCEEEEEEEECCEEEEEEEeCCCC-----------------------ceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 7 447888889999888876653211 1111111 1235888999998876766554
Q ss_pred CCC----ceEEeee
Q 039302 459 ADG----FNILMPS 468 (479)
Q Consensus 459 ~dg----i~iw~~~ 468 (479)
... +.+|++.
T Consensus 427 s~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 427 SFTQPATVLALDPA 440 (741)
T ss_dssp ETTEEEEEEEEETT
T ss_pred CCCCCCEEEEEECC
Confidence 432 6667653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-10 Score=110.30 Aligned_cols=239 Identities=10% Similarity=0.055 Sum_probs=156.3
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
....+.+. +..+.++...++.|.+||..+ .+.+.++. .......+++++++. .++
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t---------------------~~~~~~i~-~~~~p~~i~~~~~g~-lyv 99 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINT---------------------FKEVGRIT-GFTSPRYIHFLSDEK-AYV 99 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTT---------------------CCEEEEEE-CCSSEEEEEEEETTE-EEE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECcc---------------------cEEEEEcC-CCCCCcEEEEeCCCe-EEE
Confidence 34566664 336777778889999999987 55556664 345788999988874 555
Q ss_pred EEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 251 SGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
+...++.|.+||+.+...... ......+.......+++ ++..++++.. .++.|.++|+.+.+ .+..+.. .....
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~ 175 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPT 175 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBC
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCcc
Confidence 544789999999987543211 01110111124556777 3443555554 48999999999875 4444443 33457
Q ss_pred EEEEcCCCCcEEEEEeCC----------CeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 329 VISWNRLASCLLASGSDD----------GTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~d----------g~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+.++|++ .+++++..+ +.|.++|..+.+ ....+... ......++|+|++ ..|.++.. .|.
T Consensus 176 ~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~ 247 (328)
T 3dsm_A 176 SLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIW 247 (328)
T ss_dssp CCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEE
T ss_pred ceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCe----EEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEE
Confidence 88999998 676666554 789999998876 55555432 2468999999966 66665544 899
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE----cCCC-ceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST----AADG-FNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~----~~dg-i~iw~~~ 468 (479)
+||+...... ...+...+...+..++++|.+..+.++. ..++ |.+|++.
T Consensus 248 ~~d~~t~~~~----------------------~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 248 RMPVEADRVP----------------------VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEETTCSSCC----------------------SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEECCCCcee----------------------eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 9999776310 0001111124688999999666677776 4444 8888764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-09 Score=102.82 Aligned_cols=234 Identities=10% Similarity=-0.034 Sum_probs=149.0
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
-....+|+|++..++++...++.|.+||.... + ...+. ....+.+++|++++. +++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---------------------~-~~~~~-~~~~v~~i~~~~dg~-l~v 105 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG---------------------R-KTVHA-LPFMGSALAKISDSK-QLI 105 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---------------------E-EEEEE-CSSCEEEEEEEETTE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---------------------c-EEEEE-CCCcceEEEEeCCCe-EEE
Confidence 45678999987688888888899999998761 1 12222 235789999999875 555
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC------CCcEEEEEcCCCCceeeEEecCC
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------DGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
+ +. ..|.+||..++................+++++++|++. ++++... .+.|..++ +++ +..+..+.
T Consensus 106 ~-~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~ 178 (326)
T 2ghs_A 106 A-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADI 178 (326)
T ss_dssp E-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEE
T ss_pred E-EC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCC
Confidence 4 44 45999998765432111110011124689999999998 5555432 24455555 332 33333334
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CC-CCCC-ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLR--LL-KGGD-SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr--~~-~~~~-~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
...+.++|+|++..++++.+.++.|.+||+. ++ .... ..+..+......+..+.+.+++ .++++...++.|.+|+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEEC
Confidence 4678999999994455666677899999986 43 2101 1233333344567889999865 7777776778999998
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG 461 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg 461 (479)
.. .. .+.....+...+++++|. |++..+++++..++
T Consensus 258 ~~-g~------------------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 258 TD-GN------------------------HIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp TT-CC------------------------EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred CC-CC------------------------EEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 73 21 111112222369999999 88777777777664
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=123.86 Aligned_cols=201 Identities=7% Similarity=-0.046 Sum_probs=129.8
Q ss_pred CCCCceEEEEeCCCCCCeEE-----EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-
Q 039302 231 GHKDEGYAIDWNPVAPGRLV-----SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN- 304 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~-----sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~- 304 (479)
+|...+.+++|||++. +|| +|+.+..|++||+.++..... ..+... ....++|+|+++ .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~--~~~~~~wspDg~-~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGG--KYATPKWTPDSK-GFYYEWLPTDP 191 (695)
T ss_dssp SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCC--TTCCCEECTTSS-EEEEEECCCCT
T ss_pred CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcc--cccceEEecCCC-EEEEEEecCCC
Confidence 4555789999999998 777 344456899999988654200 112111 125789999999 7888887776
Q ss_pred ------------EEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEE
Q 039302 305 ------------IAIWDTRVGKS---ALMSFKAHNADVNVISWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVA 365 (479)
Q Consensus 305 ------------I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~ 365 (479)
|++|++.++.. .+.....+...+..+.|+|++ .+|+.++.++ .|++||..... ..
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-----~~ 265 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-----FR 265 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-----CE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-----eE
Confidence 99999988752 222223455678999999999 5555555444 66666554333 44
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEe---CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCee
Q 039302 366 HFEYHKHPVTSIEWSPHEGSTLAVSS---ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLK 442 (479)
Q Consensus 366 ~~~~h~~~I~~v~~sp~~~~~las~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~ 442 (479)
.+..+...+....| |++. +++++. .++.|.+||+...... ..+.+..+.....|.
T Consensus 266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~--------------------~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA--------------------SWKEIVPEDSSASLL 323 (695)
T ss_dssp EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG--------------------GCEEEECCCSSCEEE
T ss_pred EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc--------------------CCeEEecCCCCCeEE
Confidence 55556667777777 4464 555544 2578999998765210 012333333234588
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.++|+ . ..++++...++ .+||..
T Consensus 324 ~~~~~-~-~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 324 SVSIV-G-GHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEEEE-T-TEEEEEEEETTEEEEEEE
T ss_pred EEEEE-C-CEEEEEEEECCEEEEEEE
Confidence 88998 3 36888888887 566644
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-10 Score=106.84 Aligned_cols=200 Identities=4% Similarity=-0.087 Sum_probs=143.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAP 246 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~ 246 (479)
+...+..+++.+++ .++++.. ++.|.+||.... ....+. .....+.++++.+++.
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~----------------------~~~~~~~~~~~~p~~i~~~~~g~ 120 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSN----------------------NQTVLPFDGLNYPEGLAVDTQGA 120 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCS----------------------CCEECCCCSCSSEEEEEECTTCC
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCc----------------------eEeeeecCCcCCCcceEECCCCC
Confidence 33567889999988 4666655 889999997652 112222 2224688999999886
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
++++...++.|.+|+..+..... . .......+.+|++++++. ++++...++.|.+||..... .......+...
T Consensus 121 -l~v~~~~~~~i~~~~~~~~~~~~---~-~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 193 (270)
T 1rwi_B 121 -VYVADRGNNRVVKLAAGSKTQTV---L-PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN-QVVLPFTDITA 193 (270)
T ss_dssp -EEEEEGGGTEEEEECTTCCSCEE---C-CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC-EEECCCSSCCS
T ss_pred -EEEEECCCCEEEEEECCCceeEe---e-ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc-eEeecccCCCC
Confidence 77777778899999765432211 1 112234578899999987 88887778999999988764 22222233367
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+..|++++++ .++++...++.|.+||..... .......+...+.+++++|++ .++++.+.+++|.++++...
T Consensus 194 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 194 PWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEECTTC-CEEEEETTTSCEEEECTTCSC----CEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGG
T ss_pred ceEEEECCCC-CEEEEECCCCcEEEEcCCCCc----ceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCc
Confidence 8999999998 888888888999999987644 222222234578999999965 78889899999999998765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=118.24 Aligned_cols=187 Identities=12% Similarity=-0.041 Sum_probs=129.1
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc------cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN------VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
.++.|++++... +|++|+.+ .+.+|++....... ........+.. |+.|+| ++. +|+++ .++.|++|
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~-~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGD-QVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETT-EEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCC-EEEEE-cCCcEEEE
Confidence 688999999986 99999987 55669875322100 11112334566 999999 676 88888 78999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
|+++.. .......|...+.++.+.+. -+++++.||.|.+||+.... ... +...|++++|+|.+ ++
T Consensus 112 dv~sl~-~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~----~~~----~~~~Vs~v~WSpkG---~~ 176 (388)
T 1xip_A 112 DLEELS-EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS----TKQ----LAQNVTSFDVTNSQ---LA 176 (388)
T ss_dssp ESSSTT-CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC----EEE----EEESEEEEEECSSE---EE
T ss_pred Echhhh-ccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCc----ccc----ccCCceEEEEcCCc---eE
Confidence 999875 44456677888998887753 38888999999999999776 332 34689999999965 78
Q ss_pred EEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEE
Q 039302 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~ 457 (479)
.|..||.|++|+........ ...-..|+.+ ..+. +...|.+|.|.+++..+++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~-------------k~~I~~Pp~~-~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEK-------------QFEFSLPSEL-EELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEE-------------EEEECCCHHH-HTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccc-------------cceecCCccc-ccccCCCeeEEEEEEecCCeEEEEEc
Confidence 89999999999876652100 0000111111 1111 234699999999886555433
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-09 Score=100.40 Aligned_cols=242 Identities=5% Similarity=-0.053 Sum_probs=161.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
......+.++.+.+++ .+.++...++.|.+||..... . ...+..+...+.++++.+++
T Consensus 16 ~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~--------------------~-~~~~~~~~~~~~~i~~~~~g 73 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDG-KVWFTQHKANKISSLDQSGRI--------------------K-EFEVPTPDAKVMCLIVSSLG 73 (300)
T ss_dssp SSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE--------------------E-EEECSSTTCCEEEEEECTTS
T ss_pred CCCCCCcceeeECCCC-CEEEEcCCCCeEEEECCCCce--------------------E-EEECCCCCCcceeEEECCCC
Confidence 3445688999999998 577666678999999976310 0 11122334578899999888
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
. ++++...++.|..||.. +.... .........+.++++.+++. ++++...++.|..+|.. ++.....+.....
T Consensus 74 ~-l~v~~~~~~~v~~~d~~-g~~~~---~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 74 D-IWFTENGANKIGKLSKK-GGFTE---YPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp C-EEEEETTTTEEEEECTT-SCEEE---EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred C-EEEEecCCCeEEEECCC-CCeEE---ecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 6 66666667899999986 33311 11122335789999999887 77777768899999987 4322122233456
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+..+++.+++ .++++...++.|.+||. .... .......+...+..+++++++ .++++....+.|.+|+.. ..
T Consensus 147 ~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~ 219 (300)
T 2qc5_A 147 YPAFITLGSDN-ALWFTENQNNSIGRITN-TGKL---EEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT-GE 219 (300)
T ss_dssp CEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT-CC
T ss_pred CceeEEECCCC-CEEEEecCCCeEEEECC-CCcE---EEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC-Cc
Confidence 78999999998 67777777889999998 4331 112222345678999999955 777777777889999983 21
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC-CCceEEee
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA-DGFNILMP 467 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~-dgi~iw~~ 467 (479)
. .......+...+.++++++++. +.++... ++|..|++
T Consensus 220 ~-----------------------~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 220 I-----------------------SEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN 258 (300)
T ss_dssp E-----------------------EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred E-----------------------EEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence 0 1111112234688999999985 6666644 44777765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-10 Score=104.42 Aligned_cols=199 Identities=11% Similarity=0.058 Sum_probs=134.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---C-CCCceEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---G-HKDEGYAI 239 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~v~~l 239 (479)
.+..+...+.++++.|++ .++++...++.|.+||.... +...... + ....+.++
T Consensus 63 ~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g---------------------~~~~~~~~~~~~~~~~~~~i 120 (296)
T 3e5z_A 63 PEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGG---------------------EWESIADSFEGKKLNSPNDV 120 (296)
T ss_dssp EEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTC---------------------CEEEEECEETTEECCCCCCE
T ss_pred EEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCC---------------------cEEEEeeccCCCCCCCCCCE
Confidence 344567789999999999 67777677789999998551 1111111 1 11246789
Q ss_pred EeCCCCCCeEEE----Ee-------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 240 DWNPVAPGRLVS----GD-------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 240 ~~s~~~~~~l~s----g~-------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
+++|++. ++++ |. ..+.|..++.. +.. ..+..+....+.++|+|+++ .+++.+.+
T Consensus 121 ~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~~~~~~~~gi~~s~dg~-~lv~~~~~ 192 (296)
T 3e5z_A 121 CLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----SAPIRDRVKPNGLAFLPSGN-LLVSDTGD 192 (296)
T ss_dssp EECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----EEEECCCSSEEEEEECTTSC-EEEEETTT
T ss_pred EECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCE-----EEeecCCCCCccEEECCCCC-EEEEeCCC
Confidence 9999987 7776 32 13456666554 221 12334556789999999999 56777888
Q ss_pred CcEEEEEcC-CCCce---eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 303 GNIAIWDTR-VGKSA---LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 303 g~I~iwD~~-~~~~~---~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
+.|.+||+. .+. . ...+..+...+..+++++++ +++++. ++.|.+||.. ++ .+..+..+.. +++++
T Consensus 193 ~~i~~~~~~~~g~-~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~----~~~~~~~~~~-~~~~~ 262 (296)
T 3e5z_A 193 NATHRYCLNARGE-TEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GD----ELGRVLTPQT-TSNLC 262 (296)
T ss_dssp TEEEEEEECSSSC-EEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SC----EEEEEECSSC-CCEEE
T ss_pred CeEEEEEECCCCc-CcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CC----EEEEEECCCC-ceeEE
Confidence 999999997 332 2 12223345567789999999 666665 7899999986 44 6777777777 99999
Q ss_pred Ee-CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 379 WS-PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 379 ~s-p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|. |++ ..|++++.++ +..+++.+.
T Consensus 263 f~~~d~-~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 263 FGGPEG-RTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EESTTS-CEEEEEETTE-EEEEECSCC
T ss_pred EECCCC-CEEEEEcCCe-EEEEEcccc
Confidence 95 644 7777777653 444555544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-09 Score=110.85 Aligned_cols=191 Identities=10% Similarity=0.021 Sum_probs=139.9
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
.++++...+++|.++|..+ .+.+.++.. ...+..+.|+|++. +|++++.++.|.+||
T Consensus 168 ~~~V~~~~~~~V~viD~~t---------------------~~v~~~i~~-g~~p~~v~~SpDGr-~lyv~~~dg~V~viD 224 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST---------------------YEIKTVLDT-GYAVHISRLSASGR-YLFVIGRDGKVNMID 224 (567)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------CCEEEEEEC-SSCEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCC---------------------CeEEEEEeC-CCCccceEECCCCC-EEEEEcCCCeEEEEE
Confidence 6778888899999999987 556666653 33567999999998 899999999999999
Q ss_pred cC--CCCccccCCCCcccCCCcEEEEEEC----CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec----------C-CC
Q 039302 263 PA--SDATWNVDPNPFIGHAASVEDLQWS----PTESDVFASCSVDGNIAIWDTRVGKSALMSFKA----------H-NA 325 (479)
Q Consensus 263 ~~--~~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~----------h-~~ 325 (479)
+. +.... ..+.. ......++|+ |+++.++++...+++|.|+|..+.+ ++..+.. | ..
T Consensus 225 ~~~~t~~~v----~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 225 LWMKEPTTV----AEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp TTSSSCCEE----EEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCC
T ss_pred CCCCCCcEe----EEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCC
Confidence 95 43221 12222 2346789999 6999666667778999999998875 4444432 1 12
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+..+..+++++.++++....|.|.++|...... ..+..+ ........+.|+|++..+++++..++.|.++|+.+.+
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc--ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 6788999998877888888889999999987652 122233 2345677899999774445555578999999998763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.9e-10 Score=102.68 Aligned_cols=182 Identities=9% Similarity=0.078 Sum_probs=136.1
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCCeEEEEeCCCeEEEE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPGRLVSGDCNSCIHLW 261 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l~sg~~dg~I~lw 261 (479)
++|++++.++.|.+||..+ ++.+.++..+. ..+.++.+.|++. +|+ +.++.|..|
T Consensus 6 ~~lv~~~~~~~v~~~d~~t---------------------G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~ 61 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT---------------------KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMI 61 (276)
T ss_dssp EEEEECTTCSEEEEEETTT---------------------TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEE
T ss_pred cEEEeeCCCCEEEEEECCC---------------------CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEE
Confidence 6888999999999999876 66777887766 4789999999987 777 347789999
Q ss_pred ecCCCCc-cccCCCCcccC-CCcEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCceeeEEe------cCCCCEEEEEE
Q 039302 262 EPASDAT-WNVDPNPFIGH-AASVEDLQWSPTESDVFASCSV-DGNIAIWDTRVGKSALMSFK------AHNADVNVISW 332 (479)
Q Consensus 262 d~~~~~~-~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~-dg~I~iwD~~~~~~~~~~~~------~h~~~v~~l~~ 332 (479)
|. +++. |. +..+ ...+.++++.+++. ++++.+. ++.|..+|. +++ .+..+. .+......+++
T Consensus 62 d~-~G~~~W~-----~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 62 TR-DGRELWN-----IAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGE-VLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp CT-TSCEEEE-----EECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEE
T ss_pred CC-CCCEEEE-----EcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCC-EEEEEeccCCCCcccccccCceE
Confidence 98 5443 22 2222 34688999999998 7777776 777777775 443 333332 11123445678
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 333 NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 333 ~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+++ .+|++...++.|..||.. ++ .+..+..+ ..+.++...+++ .++++++.+++|..+|..+++
T Consensus 133 ~~~G-~~lv~~~~~~~v~~~d~~-G~----~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 133 NKKG-NYLVPLFATSEVREIAPN-GQ----LLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CTTS-CEEEEETTTTEEEEECTT-SC----EEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCC
T ss_pred CCCC-CEEEEecCCCEEEEECCC-CC----EEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCc
Confidence 8888 899999999999999987 76 67777764 455677788854 888888888899999988663
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-09 Score=98.16 Aligned_cols=239 Identities=7% Similarity=-0.052 Sum_probs=159.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
+...+..+.+.+++ .+.++...++.|..||..... ....+......+.++++.+++.
T Consensus 60 ~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g~~---------------------~~~~~~~~~~~~~~i~~~~~g~- 116 (300)
T 2qc5_A 60 PDAKVMCLIVSSLG-DIWFTENGANKIGKLSKKGGF---------------------TEYPLPQPDSGPYGITEGLNGD- 116 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE---------------------EEEECSSTTCCEEEEEECSTTC-
T ss_pred CCCcceeEEECCCC-CEEEEecCCCeEEEECCCCCe---------------------EEecCCCCCCCCccceECCCCC-
Confidence 44678999999988 566666667889999876311 1112222335688999998886
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
++++...++.|..++.. +..... .+......+.++++.+++. ++++...++.|..+|. ++.........+...+
T Consensus 117 l~v~~~~~~~i~~~~~~-g~~~~~---~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 190 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD-GTIYEY---DLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAP 190 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEE---ECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEEccCCCeEEEECCC-CCEEEc---cCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCc
Confidence 67766668899999986 333211 1222345789999999988 7777777889999998 4432221222344578
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
..+++.+++ .++++....+.|.+||. .+.. ....+..+...+.++++++++ .++++...++.|..|+.. ...
T Consensus 191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~- 262 (300)
T 2qc5_A 191 VGITSGNDG-ALWFVEIMGNKIGRITT-TGEI---SEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITND-NTI- 262 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE-
T ss_pred ceEEECCCC-CEEEEccCCCEEEEEcC-CCcE---EEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECCC-CcE-
Confidence 999999988 77777777788999998 3331 122233345678999999965 777777677899999983 210
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
..+....+...+.++++.+++. +.+++.. +|..+++
T Consensus 263 ----------------------~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 263 ----------------------QEYQLQTENAEPHGITFGKDGS-VWFALKC-KIGKLNL 298 (300)
T ss_dssp ----------------------EEEECCSTTCCCCCEEECTTSC-EEEECSS-EEEEEEE
T ss_pred ----------------------EEEECCccCCccceeEeCCCCC-EEEEccC-ceEEeCC
Confidence 1111112234689999999985 6665553 6666654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-09 Score=104.51 Aligned_cols=201 Identities=11% Similarity=0.028 Sum_probs=135.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.....|++.+++ .++++...++.|++||... ......... ..... ++|++++. .|
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~---------------------g~~~~~~~~-~~~~~-ia~~~~g~-~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDD---------------------NKVTTVHPG-FKGGK-PAVTKDKQ-RV 185 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTT---------------------TEEEEEEET-CCBCB-CEECTTSS-EE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCC---------------------CEEEEeecc-CCCCc-eeEecCCC-cE
Confidence 467889999988 6888878889999999875 222222222 33344 99999997 88
Q ss_pred EEEeCCC--eEEEEecCCCCccccCCCCc-ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE---EecC
Q 039302 250 VSGDCNS--CIHLWEPASDATWNVDPNPF-IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS---FKAH 323 (479)
Q Consensus 250 ~sg~~dg--~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~---~~~h 323 (479)
++++.++ .|.+|+.......... ..+ ......+.+++++|++..+++ +..++.|+.||..+....+.. ...+
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~-g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRI-GQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEE-EECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred EEEecCCCceEEEEEcCCCceeEEe-eeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCC
Confidence 8888766 7888887654321110 001 113456788999996552444 677889999999876421110 1112
Q ss_pred CCC--EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC---------------CCeEEEEEeCCCCCE
Q 039302 324 NAD--VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK---------------HPVTSIEWSPHEGST 386 (479)
Q Consensus 324 ~~~--v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~---------------~~I~~v~~sp~~~~~ 386 (479)
... .+.++|+|++..++++....+.|+.|+.... +..+.++. .....|+++|++ .+
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~l 336 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NF 336 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CE
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CE
Confidence 111 2389999965488888888899999987532 33333332 347899999965 78
Q ss_pred EEEEe-CCCcEEEEECCCC
Q 039302 387 LAVSS-ADNQLTIWDLSLE 404 (479)
Q Consensus 387 las~s-~Dg~I~iwdl~~~ 404 (479)
+++-+ .+++|+.|++..+
T Consensus 337 yvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EEEETTTTCEEEEEETTTT
T ss_pred EEEeCCCCCEEEEEECCCC
Confidence 88887 8999999997654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=121.12 Aligned_cols=206 Identities=10% Similarity=0.038 Sum_probs=131.4
Q ss_pred CCcceeEEEEecCCCcEEEEEeCC----ceEEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEeC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADT----GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDWN 242 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s 242 (479)
|...+..++|+|++..++.+.+.. .+|++||+.+ ++.+. .+.+ .....++|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t---------------------g~~~~~~~~~--~k~~~~~Ws 183 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES---------------------KQPLETPLKD--VKFSGISWL 183 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT---------------------CSEEEEEEEE--EESCCCEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC---------------------CCCCccccCC--ceeccEEEe
Confidence 445688889999995555444333 5799999987 33222 1111 113578899
Q ss_pred CCCCCeEEEEeCCC-------------eEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeC---CCcE
Q 039302 243 PVAPGRLVSGDCNS-------------CIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSV---DGNI 305 (479)
Q Consensus 243 ~~~~~~l~sg~~dg-------------~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~---dg~I 305 (479)
+++ .|+.++.+. .|++|++.+............. |...+..+.|+|+++.++++.+. ...|
T Consensus 184 -Dg~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 184 -GNE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp -TTT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred -CCC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 988 777777663 4999998775432111122233 44557889999999955555543 3589
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.++|+.++......+..+....... |++++..++++...+ +.|.++|+.+... .....+..|...+. .|+|+
T Consensus 262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCE--EEEEE
T ss_pred EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEE--EEEEE
Confidence 9999987643455666666655554 666665666666554 6899999987651 12345666666665 88887
Q ss_pred CCCEEEEEeCCC--cEEEEECCC
Q 039302 383 EGSTLAVSSADN--QLTIWDLSL 403 (479)
Q Consensus 383 ~~~~las~s~Dg--~I~iwdl~~ 403 (479)
+..++++...++ .|.+|++..
T Consensus 337 g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 337 SGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp TTEEEEEEEETTEEEEEEECTTS
T ss_pred CCEEEEEEEECCeeEEEEEECCC
Confidence 644444444555 688888764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-09 Score=97.61 Aligned_cols=193 Identities=11% Similarity=-0.021 Sum_probs=136.7
Q ss_pred EEEecCC-cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEE
Q 039302 163 LRKVAHQ-GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAID 240 (479)
Q Consensus 163 ~~~~~H~-~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 240 (479)
-++..+. ..++.+.+.|++ +++++ .++.|+.||. + ++.+..+..+. ..+.++.
T Consensus 29 w~~~~~~~~~~~~~~~~pdG-~ilvs--~~~~V~~~d~-~---------------------G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 29 WEYPLEKGWECNSVAATKAG-EILFS--YSKGAKMITR-D---------------------GRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp EEEECCTTCCCCEEEECTTS-CEEEE--CBSEEEEECT-T---------------------SCEEEEEECCTTCEEEEEE
T ss_pred EEeCCCccCCCcCeEECCCC-CEEEe--CCCCEEEECC-C---------------------CCEEEEEcCCCCccccccE
Confidence 3444454 478999999999 67773 5678999998 4 45666676543 4788999
Q ss_pred eCCCCCCeEEEEeC-CCeEEEEecCCCCccccCCC-CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 241 WNPVAPGRLVSGDC-NSCIHLWEPASDATWNVDPN-PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 241 ~s~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+.+++. .|++.+. ++.|..++......+..... ....+......+++.+++. ++++.+.++.|..||.. ++ .+.
T Consensus 84 ~~~dG~-~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G~-~~w 159 (276)
T 3no2_A 84 ILPDGN-ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-GQ-LLN 159 (276)
T ss_dssp ECTTSC-EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-SC-EEE
T ss_pred ECCCCC-EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-CC-EEE
Confidence 999997 8888776 77888888632211221111 1112223455667889888 89999999999999988 65 556
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC------CCeEEEEEeCCCCCEEEEEe
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK------HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~------~~I~~v~~sp~~~~~las~s 391 (479)
.+... ....++.+.+++ .++++++.++.|..+|..+++ .+..+..+. ..++.+...+++ .++++..
T Consensus 160 ~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~----~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~~ 231 (276)
T 3no2_A 160 SVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNR----IVRRVNANDIEGVQLFFVAQLFPLQNG-GLYICNW 231 (276)
T ss_dssp EEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCC----EEEEEEGGGSBSCCCSEEEEEEECTTS-CEEEEEE
T ss_pred EEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCc----EEEEecCCCCCCccccccccceEcCCC-CEEEEec
Confidence 66544 345667888888 888888888899999999888 777776432 237888888855 7777764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-09 Score=102.87 Aligned_cols=199 Identities=7% Similarity=-0.053 Sum_probs=134.1
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-----CceEEEEe
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-----DEGYAIDW 241 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~ 241 (479)
........+++++++ .+.++...++.|.+||..+ .+....+.... .....|++
T Consensus 81 ~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t---------------------~~~~~~i~~g~~~~~~~~p~~i~~ 138 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT---------------------YEITGYIECPDMDMESGSTEQMVQ 138 (328)
T ss_dssp ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT---------------------TEEEEEEECTTCCTTTCBCCCEEE
T ss_pred CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC---------------------CeEEEEEEcCCccccCCCcceEEE
Confidence 445678899999988 7777765889999999886 22222332211 14456666
Q ss_pred CCCCCCeEEEEe--CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----------CcEEEEE
Q 039302 242 NPVAPGRLVSGD--CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----------GNIAIWD 309 (479)
Q Consensus 242 s~~~~~~l~sg~--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----------g~I~iwD 309 (479)
.+. .|+.++ .++.|.++|+.++..... +.. ......+.++|+++ +++++..+ +.|.++|
T Consensus 139 --~~~-~lyv~~~~~~~~v~viD~~t~~~~~~----i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 139 --YGK-YVYVNCWSYQNRILKIDTETDKVVDE----LTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp --ETT-EEEEEECTTCCEEEEEETTTTEEEEE----EEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred --ECC-EEEEEcCCCCCEEEEEECCCCeEEEE----EEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEE
Confidence 333 555554 488999999987543221 111 22346789999988 77666554 7899999
Q ss_pred cCCCCceeeEEecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 310 TRVGKSALMSFKAH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 310 ~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
..+.+ ....+... ....+.++|+|++ ..|.++.. .|.+||+.+.+... ...+..+......++++|+++.+++
T Consensus 210 ~~t~~-v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~--~~~~~~~~~~p~gi~vdp~~g~lyv 283 (328)
T 3dsm_A 210 AETFT-VEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV--RPFLEFRDTKYYGLTVNPNNGEVYV 283 (328)
T ss_dssp TTTTE-EEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS--SCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred CCCCe-EEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee--eeeecCCCCceEEEEEcCCCCeEEE
Confidence 98874 44344322 3468999999988 55555443 89999998776210 0111222457889999997778888
Q ss_pred EE----eCCCcEEEEECC
Q 039302 389 VS----SADNQLTIWDLS 402 (479)
Q Consensus 389 s~----s~Dg~I~iwdl~ 402 (479)
+. ..++.|.+||..
T Consensus 284 a~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 284 ADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSSSEEEEEEECTT
T ss_pred EcccccccCCEEEEECCC
Confidence 87 678999999987
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-09 Score=100.93 Aligned_cols=237 Identities=7% Similarity=-0.061 Sum_probs=148.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
++..+........|+|++..++++...++.|..|+... . ...+..+...+.++++++
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----------------------~-~~~~~~~~~~~~gl~~d~ 95 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----------------------T-VDVLLDATAFTNGNAVDA 95 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----------------------C-EEEEEESCSCEEEEEECT
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----------------------C-EEEEeCCCCccceeeECC
Confidence 34455667788999999966888988999999998743 1 234444566789999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEE----EeC-------------CCcE
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFAS----CSV-------------DGNI 305 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s----~s~-------------dg~I 305 (479)
++. ++++...++.|.+|+.. +..... .....+ ....+++++++|++. ++++ |.. .+.|
T Consensus 96 dG~-l~v~~~~~~~v~~~~~~-g~~~~~-~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 96 QQR-LVHCEHGRRAITRSDAD-GQAHLL-VGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp TSC-EEEEETTTTEEEEECTT-SCEEEE-ECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCC-EEEEECCCCEEEEECCC-CCEEEE-EeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeE
Confidence 986 55555556899999975 332111 111111 123577899999998 7765 332 2457
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEE
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIE 378 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~ 378 (479)
..||..+++. ..+. .....+.++|+|++ ..|+.+... +.|.+||+..... .....+ .........++
T Consensus 172 ~~~d~~~g~~--~~~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l--~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 172 YRLPPDGSPL--QRMA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL--HDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEECSSSCCC--EEEE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE--EEEEEEECCSSSCCCSEE
T ss_pred EEEcCCCCcE--EEEe-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc--cCCeEEEECCCCCCCeEE
Confidence 7777765542 2222 34567899999999 555554443 7899999864320 011111 11234456788
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
+++++ ++.++ +.+ .|.+|+.... .+..... ...+..++|.|++..|.+++.
T Consensus 246 ~d~~G-~lwv~-~~~-gv~~~~~~g~-------------------------~~~~~~~-~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 246 VDRGG-WLWSS-SGT-GVCVFDSDGQ-------------------------LLGHIPT-PGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp ECTTS-CEEEC-CSS-EEEEECTTSC-------------------------EEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred ECCCC-CEEEe-cCC-cEEEECCCCC-------------------------EEEEEEC-CCceeEEEEeCCCCEEEEEcC
Confidence 99865 64444 444 4899987432 1222222 235889999988865666554
Q ss_pred CCCce
Q 039302 459 ADGFN 463 (479)
Q Consensus 459 ~dgi~ 463 (479)
+++.
T Consensus 297 -~~l~ 300 (305)
T 3dr2_A 297 -PCLW 300 (305)
T ss_dssp -TEEE
T ss_pred -CeEE
Confidence 5433
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-09 Score=98.53 Aligned_cols=205 Identities=5% Similarity=0.019 Sum_probs=135.6
Q ss_pred CCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCC
Q 039302 168 HQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVA 245 (479)
Q Consensus 168 H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~ 245 (479)
+...+..+.+.++ + .++++.. .+.|.+||........ . .....+ ....+.++++.+++
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~g~~~~~-----------------~-~~~~~~~~~~~~~~i~~d~~g 128 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTDGTFEEI-----------------A-KKDSEGRRMQGCNDCAFDYEG 128 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETTSCEEEC-----------------C-SBCTTSCBCBCCCEEEECTTS
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCCCCEEEE-----------------E-eccCCCccccCCcCEEECCCC
Confidence 4567899999999 6 6665544 3478889876210000 0 000001 12357899999988
Q ss_pred CCeEEEEeCC---------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEEC----CCCCcEEEEEeCCCcEE
Q 039302 246 PGRLVSGDCN---------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS----PTESDVFASCSVDGNIA 306 (479)
Q Consensus 246 ~~~l~sg~~d---------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~dg~I~ 306 (479)
. ++++...+ +.|..|+.. +.. . .+..+......++|+ |+++.++++...++.|.
T Consensus 129 ~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~----~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~ 201 (314)
T 1pjx_A 129 N-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-I----QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW 201 (314)
T ss_dssp C-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-E----EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred C-EEEEecCcccccccccccccCCCCeEEEECCC-CCE-E----EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEE
Confidence 6 66665544 567777754 222 1 122233456889999 99874566666789999
Q ss_pred EEEcC-CCCc----eeeEEecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 307 IWDTR-VGKS----ALMSFKAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 307 iwD~~-~~~~----~~~~~~~h~-~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+||+. .+.. ....+..+. ..+..+++++++ .++++...++.|.+||..+++ .+..+..+...+++++|+
T Consensus 202 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~i~~~ 276 (314)
T 1pjx_A 202 SYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFK 276 (314)
T ss_dssp EEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEEC
T ss_pred EEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCc----EeEEEeCCCCCceeEEEC
Confidence 99986 3321 112223333 567899999998 888888788999999998665 455666666789999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|++..++++...++.|..|++...
T Consensus 277 ~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 277 PQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCEEEEEeCCCCeEEEEeCCCC
Confidence 966326666666789999998754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-08 Score=109.02 Aligned_cols=199 Identities=10% Similarity=0.005 Sum_probs=126.9
Q ss_pred eeEEEEecCCCcEEEEEeCCc--------------eEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCc
Q 039302 172 VNRIRAMSQNPHICASWADTG--------------HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDE 235 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg--------------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~ 235 (479)
+..+.|+|+ ..++.+ +.++ .|++|++.+.. ......+. .+...
T Consensus 211 ~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-------------------~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQ-------------------SADQPVFATPELPKR 269 (741)
T ss_dssp SCCCEESTT-SEEEEE-ECCCC--------CCCCCEEEEEETTSCG-------------------GGCEEEECCTTCTTC
T ss_pred eccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEEEECCCCc-------------------hhCEEEeccCCCCeE
Confidence 467899999 666665 4433 38899986521 11122232 33335
Q ss_pred eEEEEeCCCCCCeEEEEeCCC-----eEEEEecCCC--CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC----CCc
Q 039302 236 GYAIDWNPVAPGRLVSGDCNS-----CIHLWEPASD--ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV----DGN 304 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg-----~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~----dg~ 304 (479)
+..+.|+|++. +|+..+.++ .|++||+.++ ..+ ..+..+...+.... +|++. .|+..+. ++.
T Consensus 270 ~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~----~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 270 GHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPV----TALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKK 342 (741)
T ss_dssp EEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCC----EEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCE
T ss_pred EEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCccc----EEecCCCCceEEEE-eccCC-EEEEEECCCCCCCE
Confidence 88999999998 777766543 8999999765 201 22333444444443 47888 5655554 345
Q ss_pred EEEEEcCCC-CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCCceEEEeec-CCCCeEEEEEeC
Q 039302 305 IAIWDTRVG-KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGDSVVAHFEY-HKHPVTSIEWSP 381 (479)
Q Consensus 305 I~iwD~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~-h~~~I~~v~~sp 381 (479)
|.+||+.++ ......+..+...+..++|. .+ .++++...++..+||.+.. +. ....+.. +...|..+.++|
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~----~~~~l~~~~~~~v~~~~~s~ 416 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGK----PAGAVSLPGIGSASGLSGRP 416 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSC----EEEECBCSSSCEEEEEECCB
T ss_pred EEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC----ceeeccCCCCeEEEEeecCC
Confidence 999998874 22233334444556677887 34 7889999999877776542 22 4555654 366789999999
Q ss_pred CCCCEEEEEeC---CCcEEEEECCCC
Q 039302 382 HEGSTLAVSSA---DNQLTIWDLSLE 404 (479)
Q Consensus 382 ~~~~~las~s~---Dg~I~iwdl~~~ 404 (479)
++..++++.+. .++|++||+.++
T Consensus 417 d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 417 GDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp TCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 76455554443 578999998764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-08 Score=96.00 Aligned_cols=195 Identities=10% Similarity=0.072 Sum_probs=128.1
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC--CCCceEEEEeCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG--HKDEGYAIDWNP 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~ 243 (479)
..+...+.++.+.+++. ++++ . ++.|.+||..... ...+..... ....++++++.|
T Consensus 50 ~~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~-------------------~~~~~~~~~~~~~~~~~di~~d~ 107 (297)
T 3g4e_A 50 VTMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQS-------------------AVVLATVDNDKKNNRFNDGKVDP 107 (297)
T ss_dssp EECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTE-------------------EEEEEECCTTCSSEEEEEEEECT
T ss_pred EeCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCc-------------------EEEEEecCCCCCCCCCCCEEECC
Confidence 34567899999999995 5554 3 5679999986521 111111111 123578899999
Q ss_pred CCCCeEEEEeCC---------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC--C
Q 039302 244 VAPGRLVSGDCN---------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR--V 312 (479)
Q Consensus 244 ~~~~~l~sg~~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~--~ 312 (479)
++. ++++.... ....||.+...+... .+..+....+.++|+|+++.++++.+.++.|.+||+. +
T Consensus 108 dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~ 182 (297)
T 3g4e_A 108 AGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVK----KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT 182 (297)
T ss_dssp TSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE----EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred CCC-EEEecCCcccccccccCCCcEEEEEECCCCEE----EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence 986 55544221 234555554322211 1223334568999999998566777778999999984 3
Q ss_pred CCc----eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe-CCCCCEE
Q 039302 313 GKS----ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTL 387 (479)
Q Consensus 313 ~~~----~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~l 387 (479)
+.. ....+..+......+++.+++ ++.++....+.|.+||..+++ .+..+..+...+++++|. |+...++
T Consensus 183 G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~----~~~~i~~p~~~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 183 GQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGK----RLQTVKLPVDKTTSCCFGGKNYSEMY 257 (297)
T ss_dssp CCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCC----EEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred CcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCce----EEEEEECCCCCceEEEEeCCCCCEEE
Confidence 321 112222334567899999998 888888888899999998777 778888777789999998 7654455
Q ss_pred EEEeC
Q 039302 388 AVSSA 392 (479)
Q Consensus 388 as~s~ 392 (479)
++...
T Consensus 258 vt~~~ 262 (297)
T 3g4e_A 258 VTCAR 262 (297)
T ss_dssp EEEBC
T ss_pred EEcCC
Confidence 55543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-07 Score=91.40 Aligned_cols=237 Identities=11% Similarity=0.049 Sum_probs=144.2
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..+.++.. .++.|.+||..+ .+.+.++... ...-.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t---------------------~~~~~~i~~~~~~~~~~g~~p~ 128 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFDVGPYSW 128 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC---------------------CcEEEEEECCCccccccCCCcc
Confidence 8999999966665532 367899999976 2233322111 12345
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
.++|+|+++ +|+++.. ++.|.++| .++.... .+.... .++.+.|.+...+++.+.||.+.++|. +++
T Consensus 129 ~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~----~~i~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~- 197 (373)
T 2mad_H 129 MNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDD----QLLSSP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG- 197 (373)
T ss_pred ceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEe----EEcCCC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCc-
Confidence 899999998 8877763 57899999 7754321 101111 135566777668888889999999999 665
Q ss_pred eeeEEe-----cCCCC-EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----------CCCCeEEEEE
Q 039302 316 ALMSFK-----AHNAD-VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----------HKHPVTSIEW 379 (479)
Q Consensus 316 ~~~~~~-----~h~~~-v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----------h~~~I~~v~~ 379 (479)
...... ....+ .....+.+++..++++. ..+.+.+.|+..... ..+..+.. .......+.+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~--~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA--TNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc--eEeeeeeecCCcccccceecCceEeEEE
Confidence 221111 11122 23345666664444444 678999999975431 12222221 1223445788
Q ss_pred eCCCCCEEEEEe---------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 380 SPHEGSTLAVSS---------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 380 sp~~~~~las~s---------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
+|++..++++.. ..+.|.++|+.+.+. +.....+ .....++|+|++
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v------------------------v~~i~~g-~~p~~i~~s~Dg 329 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT------------------------SSQISLG-HDVDAISVAQDG 329 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE------------------------EEEEECC-CCcCeEEECCCC
Confidence 886644444432 135799999987631 1222222 358999999999
Q ss_pred CcEEEEEc-CCC-ceEEeeecc
Q 039302 451 PGMIVSTA-ADG-FNILMPSNI 470 (479)
Q Consensus 451 ~~ll~s~~-~dg-i~iw~~~~~ 470 (479)
..+++++. .++ |.+|++.+.
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCC
Confidence 74555554 344 999998765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-07 Score=90.02 Aligned_cols=233 Identities=12% Similarity=0.002 Sum_probs=141.8
Q ss_pred cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec------C-CCCceEEEEeCCCCCCeEEE
Q 039302 179 SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------G-HKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 179 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~s~~~~~~l~s 251 (479)
++...+++++..+++|+|+|+.+....+ +...++. . ....-..+..+|++ .+++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p-----------------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs 153 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP-----------------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYIS 153 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC-----------------EEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc-----------------eeeeeechhhcccccCCCcccceeECCCe--EEEE
Confidence 7778899999999999999997632211 2222221 0 11134567788887 6666
Q ss_pred EeCC------CeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEe-------------------CCCcE
Q 039302 252 GDCN------SCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCS-------------------VDGNI 305 (479)
Q Consensus 252 g~~d------g~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s-------------------~dg~I 305 (479)
+..+ |.|.+.|..+....... ..... ..--.++-|+|+++ .+++.. ...+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~--~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKW--EIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEEC--CSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEE--ccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEE
Confidence 6555 78999999876543211 11111 12234688999998 777764 37899
Q ss_pred EEEEcCCCCceeeEEecCC--CCEEEEEE--cCCCCcEEEEEe-----CCCeEEEEeCCCCCCCCceEEEe--ecC----
Q 039302 306 AIWDTRVGKSALMSFKAHN--ADVNVISW--NRLASCLLASGS-----DDGTFSIHDLRLLKGGDSVVAHF--EYH---- 370 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~--~~v~~l~~--~p~~~~~l~sgs-----~dg~i~iwDlr~~~~~~~~~~~~--~~h---- 370 (479)
.+||+.+.+ .+.++.... .....|.| +|++...++++- .+++|.+|....+. ......+ ...
T Consensus 231 ~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~--~~~~~vIdi~~~~v~~ 307 (462)
T 2ece_A 231 HFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK--WNAEKVIEIPAEPLEG 307 (462)
T ss_dssp EEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--EEEEEEEEECCEECCS
T ss_pred EEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc--eeEEEEEeCCCccccc
Confidence 999999863 555554321 23344545 999955555555 77788877654321 1111111 110
Q ss_pred ------------CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-
Q 039302 371 ------------KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG- 437 (479)
Q Consensus 371 ------------~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g- 437 (479)
......|.++|++..+.++.-..+.|.+||+..... +..+-.+..|
T Consensus 308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~---------------------~~lv~~I~tGG 366 (462)
T 2ece_A 308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK---------------------PVLTGKVKLGG 366 (462)
T ss_dssp SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS---------------------CEEEEEEECBT
T ss_pred cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC---------------------cEEEEEEEeCC
Confidence 234688999997744444444588999999963311 0111122221
Q ss_pred C-------------CCeeeEEEeCCCCcEEEEE
Q 039302 438 Q-------------KDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 438 ~-------------~~V~~v~w~p~~~~ll~s~ 457 (479)
. .....++++|++..++++.
T Consensus 367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 1368899999998777777
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-07 Score=92.11 Aligned_cols=194 Identities=10% Similarity=-0.021 Sum_probs=131.0
Q ss_pred EEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEe----cCCCCceEEEEeCCCCCCe
Q 039302 175 IRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF----GGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~~~ 248 (479)
++|+|++. .|+.+..++ .|.+|+.... .....+ ........+++++|.+. .
T Consensus 176 ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~---------------------~~~~~~g~~~~~~~~~p~~iav~p~~g-~ 232 (409)
T 3hrp_A 176 PAVTKDKQ-RVYSIGWEGTHTVYVYMKASG---------------------WAPTRIGQLGSTFSGKIGAVALDETEE-W 232 (409)
T ss_dssp CEECTTSS-EEEEEBSSTTCEEEEEEGGGT---------------------TCEEEEEECCTTSCSCCCBCEECTTSS-E
T ss_pred eeEecCCC-cEEEEecCCCceEEEEEcCCC---------------------ceeEEeeeccchhcCCcEEEEEeCCCC-e
Confidence 89999995 444445544 7888887651 111222 11345678899999654 6
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE--EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC--
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV--EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN-- 324 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~-- 324 (479)
|+.+..++.|+.|++.+............++...- ..++|+|++..++++-..++.|+.|+.... +..+.++.
T Consensus 233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~ 309 (409)
T 3hrp_A 233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQ 309 (409)
T ss_dssp EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTC
T ss_pred EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCC
Confidence 66678889999999976543211000111222222 389999976657888788899999987653 22333222
Q ss_pred -------------CCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecC---------------CCCeE
Q 039302 325 -------------ADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYH---------------KHPVT 375 (479)
Q Consensus 325 -------------~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h---------------~~~I~ 375 (479)
.....+++++++ .++++-+ .++.|+.||+..+. +.++.++ -....
T Consensus 310 ~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~-----v~~~~g~~~~~g~~~g~~~~~~~~~P~ 383 (409)
T 3hrp_A 310 KTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGY-----VSTVAGQVDVASQIDGTPLEATFNYPY 383 (409)
T ss_dssp CSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTE-----EEEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred CCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCE-----EEEEeCCCCCCCcCCCChhceEeCCce
Confidence 347899999999 7888888 88999999986553 4555554 24578
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|+++|+ +.++++-..+++|+.+++
T Consensus 384 giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 384 DICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred EEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 9999996 588888888899988775
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-07 Score=88.25 Aligned_cols=188 Identities=9% Similarity=0.047 Sum_probs=120.7
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----C-CCceEEEEe
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----H-KDEGYAIDW 241 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h-~~~v~~l~~ 241 (479)
.+...+.++.+.+++ .++++ +.+ .|.+||.... +. ..+.. . ...+.++++
T Consensus 87 ~~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g---------------------~~-~~~~~~~~~~~~~~~~~i~~ 141 (326)
T 2ghs_A 87 ALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATG---------------------VL-TLHAELESDLPGNRSNDGRM 141 (326)
T ss_dssp ECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTC---------------------CE-EEEECSSTTCTTEEEEEEEE
T ss_pred ECCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCC---------------------cE-EEEeeCCCCCCCCCCCCEEE
Confidence 345789999999998 55554 344 4999998651 11 11111 1 235889999
Q ss_pred CCCCCCeEEEEeC------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CC
Q 039302 242 NPVAPGRLVSGDC------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR--VG 313 (479)
Q Consensus 242 s~~~~~~l~sg~~------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~--~~ 313 (479)
+|++. ++++... .+.|..++ + +... .+..+....+.++|+|+++.++++.+.++.|.+||+. ++
T Consensus 142 d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~~~----~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 142 HPSGA-LWIGTMGRKAETGAGSIYHVA--K-GKVT----KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp CTTSC-EEEEEEETTCCTTCEEEEEEE--T-TEEE----EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred CCCCC-EEEEeCCCcCCCCceEEEEEe--C-CcEE----EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 99986 5554432 24455555 3 2211 1222334578999999998455666667899999986 43
Q ss_pred -Cc----eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe-CCCCCEE
Q 039302 314 -KS----ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTL 387 (479)
Q Consensus 314 -~~----~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~l 387 (479)
.. ....+.........+++.+++ .++++...++.|.+||. .++ .+..+..+...+++++|. |++..++
T Consensus 214 l~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~----~~~~i~~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 214 LPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGN----HIARYEVPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCC----EEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred CcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCC----EEEEEECCCCCcEEEEEecCCCCEEE
Confidence 21 111222234557889999998 77777767789999998 444 567777777789999998 7654444
Q ss_pred EEEeCC
Q 039302 388 AVSSAD 393 (479)
Q Consensus 388 as~s~D 393 (479)
++...+
T Consensus 288 vt~~~~ 293 (326)
T 2ghs_A 288 VTSARE 293 (326)
T ss_dssp EEEBCT
T ss_pred EEecCC
Confidence 555444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-08 Score=94.94 Aligned_cols=245 Identities=13% Similarity=0.009 Sum_probs=144.7
Q ss_pred cceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
..++.|+++|++ +++++.. .++.++||.+... . ..... ... ....+|...+.++++.+++.
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g-~-~~~~p-----------~~~--~~~~~~~~~p~gv~~d~~g~- 79 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQD-G-LIPFP-----------PQS--GNAIITFDTVLGIKSDGNGI- 79 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETT-E-EEESC-----------CCC--SSCCCCCSCEEEEEECSSSE-
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCC-C-eecCC-----------Ccc--cCcccceeEeeEEEEcCCCc-
Confidence 689999999999 6777753 2343556655421 1 10000 000 01124556899999999875
Q ss_pred eEEEEeC-----CCeEEEEecCCCCcccc-CC-CCcccCCCcEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCcee
Q 039302 248 RLVSGDC-----NSCIHLWEPASDATWNV-DP-NPFIGHAASVEDLQWSPTESDVFASCS---VDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 248 ~l~sg~~-----dg~I~lwd~~~~~~~~~-~~-~~~~~h~~~V~~l~~sp~~~~~l~s~s---~dg~I~iwD~~~~~~~~ 317 (479)
++++-.. ++.|.+||+.++..... .. .....+...++++++++++..++++.+ .++.|.+||+.+++ ..
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~ 158 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AA 158 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EE
Confidence 4444322 57999999987542211 01 111223456789999987664667766 68899999998664 22
Q ss_pred eEEecC-----------------------------CCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCC---CCCCC---
Q 039302 318 MSFKAH-----------------------------NADVNVISWNRLASCLLASGSDDG-TFSIHDLRL---LKGGD--- 361 (479)
Q Consensus 318 ~~~~~h-----------------------------~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~---~~~~~--- 361 (479)
..+..| ...++.|+|+|++ ..|+.+...+ .|..++... .....
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 222111 1246899999999 6666665555 565555321 11000
Q ss_pred -ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCC
Q 039302 362 -SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKD 440 (479)
Q Consensus 362 -~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~ 440 (479)
..+. ..++......++++++ +.++++...++.|.+||...+. ...+.....-..
T Consensus 238 ~~~~~-~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~-----------------------~~~~~~~~~~~~ 292 (343)
T 2qe8_A 238 GSKIE-RYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRA-----------------------YKLLVTDEKLSW 292 (343)
T ss_dssp HTTCE-EEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTE-----------------------EEEEEECGGGSC
T ss_pred hcceE-ecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCC-----------------------EEEEEECCceec
Confidence 0011 1233445678999996 4899999999999999983331 012222211235
Q ss_pred eeeEEEeCCCCcEEEEEcC
Q 039302 441 LKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~ 459 (479)
+.+++|.+++. ++++++.
T Consensus 293 p~~va~~~~g~-l~v~~~~ 310 (343)
T 2qe8_A 293 TDSFNFGSDGY-LYFDCNQ 310 (343)
T ss_dssp EEEEEECTTSC-EEEEECC
T ss_pred CCeeEECCCCc-EEEEeCc
Confidence 89999999875 5555553
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-07 Score=88.04 Aligned_cols=238 Identities=11% Similarity=0.078 Sum_probs=144.5
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..++++.+ .++.|.+||..+ .+.+.++... ...-.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---------------------~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---------------------LLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGG
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---------------------CeEEEEEECCCccccccCCCCc
Confidence 3999999976666542 467899999987 4444444311 12456
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
.++++|++. +|+++.. ++.|.++|+.+.+..... ... + |..+.|.+...|++.+.||++.+.++.....
T Consensus 141 ~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI--~v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 141 MTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRML--DVP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp GEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEE--ECC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred eEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEE--ECC---C---cceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 799999998 7777653 689999999886442211 111 1 1223355555788888899999999986322
Q ss_pred eeeEEecC----CCCE-EEEEEc-CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee----------cCCCCeEEEEE
Q 039302 316 ALMSFKAH----NADV-NVISWN-RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE----------YHKHPVTSIEW 379 (479)
Q Consensus 316 ~~~~~~~h----~~~v-~~l~~~-p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~----------~h~~~I~~v~~ 379 (479)
.......+ ...+ +...|. +++ .+++ .+.+|.|++.|+..... ..+..+. .....+..+++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~ 287 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAY 287 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred EEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeE
Confidence 22211111 1112 123554 455 4444 56689999999976541 0111121 01233445778
Q ss_pred eCCCCCEEEEEeC---------CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 380 SPHEGSTLAVSSA---------DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 380 sp~~~~~las~s~---------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
+|.+..++++... .+.|.+.|+.+.+. +.....+ ..+..|+++|++
T Consensus 288 ~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv------------------------~~~i~vg-~~~~~lavs~D~ 342 (386)
T 3sjl_D 288 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER------------------------LAKFEMG-HEIDSINVSQDE 342 (386)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE------------------------EEEEEEE-EEECEEEECSSS
T ss_pred CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE------------------------EEEEECC-CCcceEEECCCC
Confidence 9876444444331 25799999988742 2222222 268899999998
Q ss_pred C-cEEEEEcCCC-ceEEeeecc
Q 039302 451 P-GMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 451 ~-~ll~s~~~dg-i~iw~~~~~ 470 (479)
. .|+++...++ |.+++..+.
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTC
T ss_pred CeEEEEEcCCCCeEEEEECCCC
Confidence 5 4555555555 999987654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-06 Score=83.20 Aligned_cols=201 Identities=10% Similarity=0.039 Sum_probs=125.8
Q ss_pred eeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCCCeE
Q 039302 172 VNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~l 249 (479)
-..+.++|++..++++... ++.|.++| .. .+.+.+ +.. .. ++.+.|.+...+
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t---------------------~~~~~~~i~~-~~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QG---------------------GSSDDQLLSS-PT---CYHIHPGAPSTF 180 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CC---------------------CCEEeEEcCC-Cc---eEEEEeCCCceE
Confidence 4578999999666655433 58899999 76 444444 322 11 245556665567
Q ss_pred EEEeCCCeEEEEecCCCCccccCC-CCcccCCCc-EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEec----
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDP-NPFIGHAAS-VEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKA---- 322 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~-V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~---- 322 (479)
++.+.||.+.+++. +++...... ........+ .....+.+++..++++ +..+.+.+.|+..... .+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCc
Confidence 77888999999999 654421100 011111122 2334566666634444 4678999999976531 1112211
Q ss_pred ------CCCCEEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 323 ------HNADVNVISWNRLASCLLASGS---------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 323 ------h~~~v~~l~~~p~~~~~l~sgs---------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
.......+.++|++..++++.. ..+.|.++|+.+.+ .+..+.. .....+++|+|++..++
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----vv~~i~~-g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----TSSQISL-GHDVDAISVAQDGGPDL 333 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE----EEEEEEC-CCCcCeEEECCCCCeEE
Confidence 1223445788998854444433 23589999999887 6777754 44679999999764377
Q ss_pred EEEe-CCCcEEEEECCCCC
Q 039302 388 AVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 388 as~s-~Dg~I~iwdl~~~~ 405 (479)
+++. .++.|.+||+.+.+
T Consensus 334 ~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 334 YALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEcCCCCeEEEEECCCCC
Confidence 7776 58999999998874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-08 Score=103.03 Aligned_cols=200 Identities=12% Similarity=0.092 Sum_probs=127.2
Q ss_pred CCCceEEEEeCCCCCCeEEE-----EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---
Q 039302 232 HKDEGYAIDWNPVAPGRLVS-----GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--- 303 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~s-----g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--- 303 (479)
|...+..++|||++. +||- |+....|++||+.++..... .+.. .....++|+ +++ .|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~--~k~~~~~Ws-Dg~-~l~y~~~~~~~~ 198 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLET---PLKD--VKFSGISWL-GNE-GFFYSSYDKPDG 198 (693)
T ss_dssp SCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEE--EESCCCEEE-TTT-EEEEEESSCCC-
T ss_pred CcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcc---ccCC--ceeccEEEe-CCC-EEEEEEecCccc
Confidence 445788899999998 7763 23335799999988653211 1111 112467899 988 666666664
Q ss_pred ----------cEEEEEcCCCCce-eeEE--ec-CCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEE
Q 039302 304 ----------NIAIWDTRVGKSA-LMSF--KA-HNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAH 366 (479)
Q Consensus 304 ----------~I~iwD~~~~~~~-~~~~--~~-h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~ 366 (479)
.|++|++.+.... ...+ .. |...+..+.|+|++..++++.+.+ +.|+++|+..... ....
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~---~~~~ 275 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA---PLLT 275 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC---CCEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC---ceEE
Confidence 3999999876431 2222 33 455678899999995555555432 5899999987643 3455
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee
Q 039302 367 FEYHKHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE 443 (479)
Q Consensus 367 ~~~h~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~ 443 (479)
+..+....... |+++++.+++.+..+ +.|..+++...... ..+.+..|. ..+.
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--------------------~~~~l~~~~--~~~~- 331 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--------------------HWRDLIPER--QQVL- 331 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--------------------GCEEEECCC--SSCE-
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--------------------ccEEEecCC--CCEE-
Confidence 66666666665 666565666666554 57889998765310 012233333 2343
Q ss_pred EEEeCCCCcEEEEEcCCC---ceEEee
Q 039302 444 LHWHTQVPGMIVSTAADG---FNILMP 467 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg---i~iw~~ 467 (479)
.|++.+..++++...++ |.+|++
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 88888887888877776 555554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-07 Score=88.86 Aligned_cols=114 Identities=7% Similarity=-0.089 Sum_probs=74.3
Q ss_pred CCCcEEEEEeCC----ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe--
Q 039302 180 QNPHICASWADT----GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD-- 253 (479)
Q Consensus 180 ~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~-- 253 (479)
++..++++...+ +.|.++|..+ .+.+.++..-..+ .++++|+++ +|+++.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t---------------------~~vv~~I~vG~~P--gia~SpDgk-~lyVan~~ 138 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGST---------------------GRILGMTDGGFLP--HPVAAEDGS-FFAQASTV 138 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECSSC--EEEECTTSS-CEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCC---------------------CEEEEEEECCCCC--ceEECCCCC-EEEEEecc
Confidence 444555555544 7999999987 5556666544445 899999998 666654
Q ss_pred --------CCCeEEEEecCCCCccccCC----CCcccCCCcEEEEEECCCCCcEEEEEe-C-CCcEEEEEcCCCCceeeE
Q 039302 254 --------CNSCIHLWEPASDATWNVDP----NPFIGHAASVEDLQWSPTESDVFASCS-V-DGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 254 --------~dg~I~lwd~~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~~l~s~s-~-dg~I~iwD~~~~~~~~~~ 319 (479)
.++.|.++|..+........ ..+. .......+.|+|+++ +++++. . ++.|.+.|+.+.+ .+..
T Consensus 139 ~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~-~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~k-vv~~ 215 (426)
T 3c75_H 139 FERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL-VGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKT-FDRM 215 (426)
T ss_dssp EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-BSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTE-EEEE
T ss_pred ccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-cCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCe-EEEE
Confidence 46799999998865422100 0000 012345689999999 555554 3 6889999999875 3434
Q ss_pred E
Q 039302 320 F 320 (479)
Q Consensus 320 ~ 320 (479)
+
T Consensus 216 I 216 (426)
T 3c75_H 216 L 216 (426)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-07 Score=87.80 Aligned_cols=203 Identities=11% Similarity=0.022 Sum_probs=130.0
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+........+..|++++..+++++..++.|..|+. ++.. ..+..+...+..++++++++ ++++...++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-----~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~ 107 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-----DVLLDATAFTNGNAVDAQQR-LVHCEHGRR 107 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-----EEEEESCSCEEEEEECTTSC-EEEEETTTT
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-----EEEeCCCCccceeeECCCCC-EEEEECCCC
Confidence 3445555556677899999998746777778899999987 3332 22344556789999999998 666655668
Q ss_pred cEEEEEcCCCCceeeEEec-----CCCCEEEEEEcCCCCcEEEE----EeC-------------CCeEEEEeCCCCCCCC
Q 039302 304 NIAIWDTRVGKSALMSFKA-----HNADVNVISWNRLASCLLAS----GSD-------------DGTFSIHDLRLLKGGD 361 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~l~s----gs~-------------dg~i~iwDlr~~~~~~ 361 (479)
.|.+|+.. ++ ...+.. ....++.+++.+++ .++++ |.. .+.|..||..++.
T Consensus 108 ~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--- 180 (305)
T 3dr2_A 108 AITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--- 180 (305)
T ss_dssp EEEEECTT-SC--EEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---
T ss_pred EEEEECCC-CC--EEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---
Confidence 89999986 43 222211 12346789999999 77776 332 2567888876555
Q ss_pred ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 362 ~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
..... .......++|+|++ ..|+.+... +.|.+|++..... .....+..
T Consensus 181 -~~~~~--~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l---------------------~~~~~~~~ 235 (305)
T 3dr2_A 181 -LQRMA--DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL---------------------HDRRHFAS 235 (305)
T ss_dssp -CEEEE--EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE---------------------EEEEEEEC
T ss_pred -EEEEe--cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc---------------------cCCeEEEE
Confidence 22222 33456889999966 656555544 7899999864310 00111221
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
.....+..+++.+++. +.+++ .++|.+|++
T Consensus 236 ~~~~~pdgi~~d~~G~-lwv~~-~~gv~~~~~ 265 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGW-LWSSS-GTGVCVFDS 265 (305)
T ss_dssp CSSSCCCSEEECTTSC-EEECC-SSEEEEECT
T ss_pred CCCCCCCeEEECCCCC-EEEec-CCcEEEECC
Confidence 1223466788999886 54444 556777765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-05 Score=72.83 Aligned_cols=201 Identities=6% Similarity=-0.055 Sum_probs=131.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..+..+++.+.+..++++-...+.|.++++.. ......+........++++.+.+...+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---------------------~~~~~~~~~~~~~p~~ia~d~~~~~ly 94 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTIIRQDLGSPEGIALDHLGRTIF 94 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEEECTTCCCEEEEEEETTTTEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCC---------------------CCcEEEEECCCCCccEEEEEecCCeEE
Confidence 45789999997768888877889999999875 122222222224678999998765244
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCceeeEE-ecCCCC
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--DGNIAIWDTRVGKSALMSF-KAHNAD 326 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--dg~I~iwD~~~~~~~~~~~-~~h~~~ 326 (479)
++-...+.|.++++........ ..........++++|++..++++... .+.|..+++.... ...+ ...-..
T Consensus 95 v~d~~~~~I~~~~~~g~~~~~~----~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~ 168 (267)
T 1npe_A 95 WTDSQLDRIEVAKMDGTQRRVL----FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGL 168 (267)
T ss_dssp EEETTTTEEEEEETTSCSCEEE----ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSC
T ss_pred EEECCCCEEEEEEcCCCCEEEE----EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCC
Confidence 5555677999999864322111 11112457899999976645555543 4688888886542 2222 223345
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+.+++++++..++++-...+.|.++|+.... ....+.. ......++.. ++.++++....+.|.++|....
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~----~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG----RRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEE----EEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCc----eEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 78999999875777787788899999997543 2222332 2334567664 4466666666789999998766
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-06 Score=84.64 Aligned_cols=203 Identities=11% Similarity=0.014 Sum_probs=119.3
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..+.++.+ .++.|.+||..+ .+.+.++... .....
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T---------------------~~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---------------------CCEEEEEEETTSCSCCBSCCTT
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---------------------CCEEEEEECCCccccccCCCcc
Confidence 7999999976666642 478899999998 5556665432 12456
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEE--EecCCCCccccCC--CCcccC---------CCcEEEEEE--------------
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHL--WEPASDATWNVDP--NPFIGH---------AASVEDLQW-------------- 288 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~l--wd~~~~~~~~~~~--~~~~~h---------~~~V~~l~~-------------- 288 (479)
.++++|+++ +|+++.. ...|.+ +|+.+-....+.. ..+..+ .+.+..+..
T Consensus 128 ~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 128 IIGNCASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp SEEECTTSS-CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred eEEEcCCCC-EEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 899999998 7777764 457888 8885510000000 000000 000000100
Q ss_pred ------------CCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEec-------C---CCCEEEEEEcCCCCcEEEEEe-
Q 039302 289 ------------SPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKA-------H---NADVNVISWNRLASCLLASGS- 344 (479)
Q Consensus 289 ------------sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~-------h---~~~v~~l~~~p~~~~~l~sgs- 344 (479)
.+++. .++..+. +.|.+.|+..... .+..+.. + ......+.++|++..++++..
T Consensus 207 t~~i~vg~~P~~~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 207 TGAQNCSSQAAQANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp CTTSCBCSCCEEETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeeeCCCCccccccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 22233 2333333 6677777654321 1111100 0 011122689999855555443
Q ss_pred C-------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCC
Q 039302 345 D-------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~-------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~~ 405 (479)
. ++.+.++|+.+.+ .+..+.... ....|.|+|++..++++.. .++.|.++|+.+.+
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQ----TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCC----EEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCcccccCCCEEEEECCCCe----EEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2 2356699999987 677766533 5789999997756788888 69999999999874
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-09 Score=102.67 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=95.8
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
.++++++.||.|+.||..+ ++.+..+.. ..+.+..+..++. .+++++.||.|+.||
T Consensus 10 ~~v~~gs~dg~v~a~d~~t---------------------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRT---------------------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLG 65 (369)
T ss_dssp TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-
T ss_pred CEEEEEcCCCEEEEEECCC---------------------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEE
Confidence 5777889999999999887 566666655 4455555555555 778888999999999
Q ss_pred cCCCCc-cccCCCCccc--CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcE
Q 039302 263 PASDAT-WNVDPNPFIG--HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 263 ~~~~~~-~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
..+++. |... ..... ...++ +. .+. .+++++.++.|+.||.++++ .+..+..+. ...++|.+ ..
T Consensus 66 ~~tG~~~w~~~-~~~~~~~~~sp~----~~-~~~-~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~-~~ 132 (369)
T 2hz6_A 66 SKNNEGLTKLP-FTIPELVQASPC----RS-SDG-ILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPST-SL 132 (369)
T ss_dssp ----CCSEECS-CCHHHHHTTCSC----C-------CCCCEEEEEEEEECCC----------------------------
T ss_pred CCCCceeeeee-ccCccccccCce----Ee-cCC-EEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccC-CE
Confidence 977654 2211 10000 11111 11 233 67788889999999999986 444444332 23456666 78
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCC
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE--GSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~--~~~las~s~Dg~I~iwdl~~~~ 405 (479)
|++++.++.|+.||.++++. +..+..+. .....+.+.. ...+++++.||.|..||..+++
T Consensus 133 v~~~~~dg~v~a~d~~tG~~----~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTREL----RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSC----CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred EEEEecCCEEEEEECCCCCE----EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 88899999999999998873 33332211 1122233211 1456778889999999998763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-06 Score=81.38 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=125.5
Q ss_pred ceeEEEEecCCCcEEEEEe-CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 171 CVNRIRAMSQNPHICASWA-DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.-..+.++|++..++++.. .++.|.++|+.+ .+.+.++.... |..+.|.+...+
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t---------------------~~vv~tI~v~g----~~~~~P~g~~~~ 192 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---------------------KAFKRMLDVPD----CYHIFPTAPDTF 192 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTT---------------------TEEEEEEECCS----EEEEEEEETTEE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCC---------------------CcEEEEEECCC----cceeecCCCcee
Confidence 4667899999966666643 368999999987 45555553211 112235444477
Q ss_pred EEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEE-EEEEC-CCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEe----
Q 039302 250 VSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVE-DLQWS-PTESDVFASCSVDGNIAIWDTRVGKS-ALMSFK---- 321 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~-~l~~s-p~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~---- 321 (479)
++.+.||.+.+.++.+.+.... ....+..-..++. ...|. ++++ ++..+.+|.|.+.|+..... ....+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc--EEEEeCCCEEEEEECCCCcceeecceecccc
Confidence 7888899998888866322111 0011111112221 23554 5664 33356689999999986531 111111
Q ss_pred ------cCCCCEEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 322 ------AHNADVNVISWNRLASCLLASGSD---------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 322 ------~h~~~v~~l~~~p~~~~~l~sgs~---------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
-.......+++++++..++++-.. .+.|.++|+.+.+ .+..+.. ...+++|+++|++..+
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----v~~~i~v-g~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----RLAKFEM-GHEIDSINVSQDEKPL 345 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEE-EEEECEEEECSSSSCE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe----EEEEEEC-CCCcceEEECCCCCeE
Confidence 012233457778988555554321 2579999999988 6777654 3478899999977446
Q ss_pred EEE-EeCCCcEEEEECCCCC
Q 039302 387 LAV-SSADNQLTIWDLSLEK 405 (479)
Q Consensus 387 las-~s~Dg~I~iwdl~~~~ 405 (479)
|++ ...++.|.++|..+.+
T Consensus 346 ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEcCCCCeEEEEECCCCc
Confidence 555 4559999999998874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.3e-06 Score=82.31 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=119.7
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..++++.. .++.|.++|..+ .+.+.++.-- .....
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t---------------------~~vv~~I~v~g~~r~~~g~~P~ 180 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFLVGTYQW 180 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGG
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC---------------------CcEEEEEECCCccccccCCCcc
Confidence 7999999977776643 467899999987 3444444211 12346
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccC--------------------------CCcEE-----
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGH--------------------------AASVE----- 284 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h--------------------------~~~V~----- 284 (479)
.+.++|+++ +|+++.. ++.|.+.|+.+.+...... ..+. ...|.
T Consensus 181 ~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~--v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~ 257 (426)
T 3c75_H 181 MNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLD--VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE 257 (426)
T ss_dssp GSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEE--CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred eEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEE--cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence 789999998 7777763 5789999998754321100 0000 00000
Q ss_pred -----------EEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-eEEec----------CCCCEEEEEEcCCCCcEEEE
Q 039302 285 -----------DLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL-MSFKA----------HNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 285 -----------~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~-~~~~~----------h~~~v~~l~~~p~~~~~l~s 342 (479)
.+.|.+++. .++..+..+.|.+.|+......+ ..+.. .......++++|++..++++
T Consensus 258 ~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa 336 (426)
T 3c75_H 258 VFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL 336 (426)
T ss_dssp CCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred eeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence 012233333 22222334455555554322100 00000 01111236888888555555
Q ss_pred Ee---------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCC
Q 039302 343 GS---------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 343 gs---------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~~ 405 (479)
.. ..+.|.++|+.+.+ .+.++.. ......|.|+|++..+++++. .++.|.++|+.+.+
T Consensus 337 ~~~~~~gthk~~s~~VsVID~~T~k----vv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 337 VDQRDEWKHKAASRFVVVLNAETGE----RINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCC----EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ecccccccccCCCCEEEEEECCCCe----EEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 43 13579999999988 7777764 235789999997642777777 59999999998874
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.5e-07 Score=86.65 Aligned_cols=104 Identities=5% Similarity=-0.165 Sum_probs=67.8
Q ss_pred cEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe-----
Q 039302 183 HICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD----- 253 (479)
Q Consensus 183 ~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~----- 253 (479)
.++++-..++ +|.++|..+ .+.+.++.....+ .+.++|++. +|+++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t---------------------~~v~~~i~vG~~P--~i~~spDg~-~lyVan~~~~r 88 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGC---------------------GVTLGHSLGAFLS--LAVAGHSGS-DFALASTSFAR 88 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECTTC--EEEECTTSS-CEEEEEEEETT
T ss_pred eEEEECCccCCccceEEEEECCC---------------------CeEEEEEeCCCCC--ceEECCCCC-EEEEEcccccc
Confidence 4555545444 888999887 5666666544445 799999998 677665
Q ss_pred -----CCCeEEEEecCCCCccccCCCCcc--c---CCCcEEEEEECCCCCcEEEEEeC-CCcEEE--EEcCC
Q 039302 254 -----CNSCIHLWEPASDATWNVDPNPFI--G---HAASVEDLQWSPTESDVFASCSV-DGNIAI--WDTRV 312 (479)
Q Consensus 254 -----~dg~I~lwd~~~~~~~~~~~~~~~--~---h~~~V~~l~~sp~~~~~l~s~s~-dg~I~i--wD~~~ 312 (479)
.++.|.+||+.+....... ... . .......++++|+++.++++... +..|.+ +|+.+
T Consensus 89 ~~~G~~~~~VsviD~~T~~vv~~I--~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 89 SAKGKRTDYVEVFDPVTFLPIADI--ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TTSSSEEEEEEEECTTTCCEEEEE--EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cccCCCCCEEEEEECCCCCEEEEE--ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 3689999999886542211 010 0 01234578999999944444333 467888 88865
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.7e-05 Score=70.09 Aligned_cols=161 Identities=7% Similarity=-0.029 Sum_probs=106.7
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
....+++|++.+...+++-...+.|..+++........ ..........++++|.+..++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~----~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI----IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE----ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE----EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 35679999997652444555678999999865432111 11122467899999977657777777889999998754
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEE
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~--dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~ 390 (479)
. ............+.++++|+++.++++... .+.|..+++.... ...+ ...-.....++++|+++.++++-
T Consensus 112 ~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-----~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 112 Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-----RRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-----CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred C-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-----cEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 3 111222222467899999976466666544 4788888876432 2222 22234578999999765677777
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
...+.|.++++...
T Consensus 186 ~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 186 AGTHRAECLNPAQP 199 (267)
T ss_dssp TTTTEEEEEETTEE
T ss_pred CCCCEEEEEecCCC
Confidence 77889999998643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-05 Score=72.15 Aligned_cols=204 Identities=7% Similarity=-0.036 Sum_probs=136.1
Q ss_pred EEEecCCcc--eeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceE
Q 039302 163 LRKVAHQGC--VNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGY 237 (479)
Q Consensus 163 ~~~~~H~~~--V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~ 237 (479)
+..++|... ...+.|++++ .+.++.+. ++.|+++|+.+ ++.+..+.- ......
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~t---------------------g~v~~~i~l~~~~fge 69 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQT---------------------GKVENIHKMDDSYFGE 69 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTT---------------------CCEEEEEECCTTCCEE
T ss_pred EEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCC---------------------CCEEEEEecCCCcceE
Confidence 466778754 5799999986 66666543 67999999987 444554432 112333
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.+++. +....++.-.++.+.++|..+...... .... ... ...+++++..++++- .++.|.++|..+.+ .+
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~--i~~g--~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~-v~ 139 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN--FTHQ--MKD--GWGLATDGKILYGSD-GTSILYEIDPHTFK-LI 139 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE--EECC--SSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCC-EE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE--EECC--CCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCc-EE
Confidence 45554 332445555688999999987544221 1111 011 123455677566554 68899999999875 34
Q ss_pred eEEecC-----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------------CCCeEEEEE
Q 039302 318 MSFKAH-----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------------KHPVTSIEW 379 (479)
Q Consensus 318 ~~~~~h-----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------------~~~I~~v~~ 379 (479)
..+... -..++.+.|. ++ .+++....++.|.+.|..+++ .+..+... ....+.|+|
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~ 213 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGT----LLGWILLPNLRKKLIDEGFRDIDVLNGIAW 213 (266)
T ss_dssp EEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCC----EEEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred EEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCc----EEEEEECCCcccccccccccccCceEEEEE
Confidence 444321 1247888888 56 677777678999999999988 67776531 135689999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+|.+..+++++...+.|.+.++...
T Consensus 214 ~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 214 DQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCCCCEEEEECCCCCeEEEEEEecc
Confidence 9987788888888999999988654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-06 Score=80.88 Aligned_cols=205 Identities=6% Similarity=-0.073 Sum_probs=125.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeC-----CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec------CCCCc
Q 039302 167 AHQGCVNRIRAMSQNPHICASWAD-----TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------GHKDE 235 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~-----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~ 235 (479)
.|-..+..+++.+++ .++++-.. ++.|.+||+.+. +.+.++. .+...
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg---------------------~~~~~~~~~~~~~~~~~~ 121 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNN---------------------QLSRVIYLPPPITLSNSF 121 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTT---------------------EEEEEEECCTTTSCTTCC
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCC---------------------eEEEEEECChhhcccccc
Confidence 355689999999998 56665433 578999998752 2222222 12235
Q ss_pred eEEEEeCCCCCCeEEEEe---CCCeEEEEecCCCCccccCCC--Cc---------cc--------------CCCcEEEEE
Q 039302 236 GYAIDWNPVAPGRLVSGD---CNSCIHLWEPASDATWNVDPN--PF---------IG--------------HAASVEDLQ 287 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~---~dg~I~lwd~~~~~~~~~~~~--~~---------~~--------------h~~~V~~l~ 287 (479)
...+++++.+...+++.. .++.|.+||+.++..+..... .+ .+ ....++.|+
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia 201 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV 201 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence 678999986542445544 578999999976544332110 00 00 012468999
Q ss_pred ECCCCCcEEEEEeCCC-cEEEEEcC---CCC----ce--eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 288 WSPTESDVFASCSVDG-NIAIWDTR---VGK----SA--LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 288 ~sp~~~~~l~s~s~dg-~I~iwD~~---~~~----~~--~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
|+|+++ .|+.+...+ .|..++.. ... .. .....++......+++++++ .++++...++.|.+||...+
T Consensus 202 ~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 202 LDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp ECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTT
T ss_pred eccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCC
Confidence 999998 566655554 55555532 110 00 01122334456778999998 89999999999999998444
Q ss_pred CCCCceEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 358 KGGDSVVAHFE-YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 358 ~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
+ ...... .+...+++++|.++ +.++++.+..+.+.+|.
T Consensus 280 ~----~~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 280 A----YKLLVTDEKLSWTDSFNFGSD-GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp E----EEEEEECGGGSCEEEEEECTT-SCEEEEECCGGGSGGGB
T ss_pred C----EEEEEECCceecCCeeEECCC-CcEEEEeCccccccccc
Confidence 3 222221 12456899999985 47777777655554443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-05 Score=76.95 Aligned_cols=193 Identities=19% Similarity=0.143 Sum_probs=120.3
Q ss_pred ceeEEEEecCCCcEEEEEeCC------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC---CCceEEEEe
Q 039302 171 CVNRIRAMSQNPHICASWADT------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH---KDEGYAIDW 241 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~d------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~ 241 (479)
.-..+.+.|++ +++++..+ |.|.++|..+ .+.+.++... ..-.+.+.|
T Consensus 139 ~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T---------------------~~v~~~~~~~~~~~~~~Yd~~~ 195 (462)
T 2ece_A 139 RLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS---------------------FEPLGKWEIDRGDQYLAYDFWW 195 (462)
T ss_dssp EEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT---------------------CCEEEECCSBCTTCCCCCCEEE
T ss_pred cccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC---------------------CeEEEEEccCCCCccccceEEE
Confidence 44567888998 55555555 7899999886 4555555422 123567889
Q ss_pred CCCCCCeEEEEe-------------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE--CCCCCcEEEEEe
Q 039302 242 NPVAPGRLVSGD-------------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW--SPTESDVFASCS 300 (479)
Q Consensus 242 s~~~~~~l~sg~-------------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~s 300 (479)
+|+++ .+++.. ...+|.+||+.+++.... ..+.........|.| +|+++..++++-
T Consensus 196 ~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t--I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 196 NLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS--LTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp ETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE--EESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred CCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE--EecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 99998 787774 368999999987432111 111111223455655 999996677777
Q ss_pred -----CCCcEEEEEcCCCCc-eeeE--EecC----------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 301 -----VDGNIAIWDTRVGKS-ALMS--FKAH----------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 301 -----~dg~I~iwD~~~~~~-~~~~--~~~h----------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
.+++|.+|....+.- .... +... ......|.+++++..+.++.-..+.|.+||+..
T Consensus 273 ~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 273 VSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred eeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 788898776554311 0111 1110 244678999999966666666788999999964
Q ss_pred CCCCCceEEEeecCC--------------CCeEEEEEeCCCCCEEEEEe
Q 039302 357 LKGGDSVVAHFEYHK--------------HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 357 ~~~~~~~~~~~~~h~--------------~~I~~v~~sp~~~~~las~s 391 (479)
... ...+..+.... +.-..++++|++ ++|+++.
T Consensus 353 ~~~-~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~LyVaN 399 (462)
T 2ece_A 353 PFK-PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RRVYVTN 399 (462)
T ss_dssp TTS-CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SEEEEEC
T ss_pred CCC-cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CEEEEEc
Confidence 321 22444443211 125789999976 6666665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.9e-05 Score=71.10 Aligned_cols=220 Identities=12% Similarity=-0.023 Sum_probs=121.2
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.....+++.+++ .++.++..++.|..|+..... ..+.... ........................+|++.+... .
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~ 93 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYAS---PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q 93 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESC---TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEeccc---ccccccccccccchhccccCCCCceEEEcCCCC-c
Confidence 456778899987 555567888999999876511 0000000 000000000000000000012468899987332 6
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECC-CCCcEEEEEeC-----------------CCcEEEEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSP-TESDVFASCSV-----------------DGNIAIWD 309 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp-~~~~~l~s~s~-----------------dg~I~iwD 309 (479)
|+.++..+.|..++..++..... .....+ .....+++++.+ ++. ++++-.. ++.|..||
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQL-ATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEE-ESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCCEEEEe-cccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEe
Confidence 77776666788888764322111 011111 123578999999 887 6665432 36788888
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
..++. +..+.......+.|+|+|++..++++-+..+.|.+|++..... . ....+....+ ...+++.+++ +++++
T Consensus 172 ~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~-~~~~~~~~~g-P~gi~~d~~G-~l~va 245 (322)
T 2fp8_A 172 PSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-G-TAEVLVKIPN-PGNIKRNADG-HFWVS 245 (322)
T ss_dssp TTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-T-CEEEEEECSS-EEEEEECTTS-CEEEE
T ss_pred CCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-C-ccceEEeCCC-CCCeEECCCC-CEEEE
Confidence 87653 2222222234577999999844566666778999999875321 0 1222221223 7889999965 66665
Q ss_pred EeC----------CCcEEEEECC
Q 039302 390 SSA----------DNQLTIWDLS 402 (479)
Q Consensus 390 ~s~----------Dg~I~iwdl~ 402 (479)
... .+.|..+|..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT
T ss_pred ecCcccccccCCCccEEEEECCC
Confidence 544 4567777753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=7.8e-05 Score=78.43 Aligned_cols=156 Identities=13% Similarity=0.136 Sum_probs=100.3
Q ss_pred EEEeCCCCCCeEEEEeCCC-------------------eEEEEecCCCCc-cccCCCCcccC-------CCcEEEEEECC
Q 039302 238 AIDWNPVAPGRLVSGDCNS-------------------CIHLWEPASDAT-WNVDPNPFIGH-------AASVEDLQWSP 290 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg-------------------~I~lwd~~~~~~-~~~~~~~~~~h-------~~~V~~l~~sp 290 (479)
.+++.+.+. +|+.+..++ .|..+|..+++. |... ...| .....-+....
T Consensus 247 ~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~---~~~~d~wd~~~~~~p~l~~~~~ 322 (677)
T 1kb0_A 247 SMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ---ETPGDNWDYTSTQPMILADIKI 322 (677)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE---SSTTCCSCCCCCSCCEEEEEEE
T ss_pred ceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe---cCCCcccccccCCCcEEEeccc
Confidence 567778775 888777664 599999988654 2211 1111 11122223333
Q ss_pred CCC--cEEEEEeCCCcEEEEEcCCCCceeeEEecCC-----------CCE------------------------EEEEEc
Q 039302 291 TES--DVFASCSVDGNIAIWDTRVGKSALMSFKAHN-----------ADV------------------------NVISWN 333 (479)
Q Consensus 291 ~~~--~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~-----------~~v------------------------~~l~~~ 333 (479)
+++ ..++.++.+|.|+++|.++++ .+..+.... ..+ ..++++
T Consensus 323 dG~~~~~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d 401 (677)
T 1kb0_A 323 AGKPRKVILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (677)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc
Confidence 552 378999999999999999986 333332110 011 146888
Q ss_pred CCCCcEEEEEeC-------------------------------------------CCeEEEEeCCCCCCCCceEEEeecC
Q 039302 334 RLASCLLASGSD-------------------------------------------DGTFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 334 p~~~~~l~sgs~-------------------------------------------dg~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
|+. .++++... .|.|..||+.+++ .+-.+..
T Consensus 402 p~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~----~~W~~~~- 475 (677)
T 1kb0_A 402 PQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK----AAWSVEH- 475 (677)
T ss_dssp TTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE----EEEEEEE-
T ss_pred CCC-CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc----EEeecCC-
Confidence 887 55555432 2789999999987 5666553
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..++....+...+ .+++.++.|+.|++||+.+++
T Consensus 476 ~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 476 VSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred CCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCc
Confidence 3445555566545 677888999999999999884
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00012 Score=66.96 Aligned_cols=207 Identities=11% Similarity=0.072 Sum_probs=131.2
Q ss_pred CcEEecCCCC--ceEEEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe
Q 039302 225 PLVKFGGHKD--EGYAIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 225 ~~~~~~~h~~--~v~~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 300 (479)
.+.++ .|.. ....|+|++++. ++++.+. ++.|++.|+.+++.... ..+.. ......+++. +..++++.-
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~--i~l~~-~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENI--HKMDD-SYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEE--EECCT-TCCEEEEEEE--TTEEEEEET
T ss_pred EEEEE-ECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEE--EecCC-CcceEEEEEe--CCEEEEEEe
Confidence 34445 3443 357999998853 4444332 57999999988765331 11112 1233456665 444777777
Q ss_pred CCCcEEEEEcCCCCceeeEEecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--C---CCe
Q 039302 301 VDGNIAIWDTRVGKSALMSFKAH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--K---HPV 374 (479)
Q Consensus 301 ~dg~I~iwD~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~---~~I 374 (479)
.++.+.++|..+.+ .+..+... ... ..+++++..++++- .++.|.++|..+.+ .+..+..- . ..+
T Consensus 84 ~~~~v~viD~~t~~-v~~~i~~g~~~g---~glt~Dg~~l~vs~-gs~~l~viD~~t~~----v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 84 LKNIGFIYDRRTLS-NIKNFTHQMKDG---WGLATDGKILYGSD-GTSILYEIDPHTFK----LIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp TCSEEEEEETTTTE-EEEEEECCSSSC---CEEEECSSSEEEEC-SSSEEEEECTTTCC----EEEEEECEETTEECCCE
T ss_pred cCCEEEEEECCCCc-EEEEEECCCCCe---EEEEECCCEEEEEC-CCCeEEEEECCCCc----EEEEEEECCCCcccccc
Confidence 89999999999875 55555432 222 23445664566554 68899999999887 56665431 1 236
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-----------cCCCCeee
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-----------QGQKDLKE 443 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-----------~g~~~V~~ 443 (479)
+.+.|. ++.+++....++.|.+.|..+.+.. ..+... ......+.
T Consensus 155 nele~~--dg~lyvn~~~~~~V~vID~~tg~V~----------------------~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 155 NELEYI--NGEVWANIWQTDCIARISAKDGTLL----------------------GWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp EEEEEE--TTEEEEEETTSSEEEEEETTTCCEE----------------------EEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred eeEEEE--CCEEEEecCCCCeEEEEECCCCcEE----------------------EEEECCCcccccccccccccCceEE
Confidence 788888 3466666667899999999887521 111110 00124689
Q ss_pred EEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 444 LHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
++|+|.+..+++++.... +.+.++....
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999999988888887776 7777776553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-05 Score=69.56 Aligned_cols=190 Identities=11% Similarity=0.058 Sum_probs=119.8
Q ss_pred EEEecCCcce--eEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 163 LRKVAHQGCV--NRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 163 ~~~~~H~~~V--~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
++..+|...- ..+.|+ ++ .+..+.+.+| .|+++|+.+ ++.+..+... ...+.
T Consensus 34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T---------------------gkv~~~~~l~-~~~Fg 89 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES---------------------GKTLQQIELG-KRYFG 89 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT---------------------CCEEEEEECC-TTCCE
T ss_pred EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCC---------------------CcEEEEEecC-Cccce
Confidence 4566887655 778888 55 6777777766 899999987 4555555432 23333
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
....+.+....+..-.++.+.++|..+.+.... ..+.++. ..++ +++..++++- .++.|.++|..+.+ .+.
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t--i~~~~eG---~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~-v~~ 160 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS--FNYDGEG---WGLT--HNDQYLIMSD-GTPVLRFLDPESLT-PVR 160 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTCCEEEE--EECSSCC---CCEE--ECSSCEEECC-SSSEEEEECTTTCS-EEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE--EECCCCc---eEEe--cCCCEEEEEC-CCCeEEEEcCCCCe-EEE
Confidence 222233442444445688999999988655322 1121211 2333 4566455554 47889999999875 444
Q ss_pred EEecC--C---CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------------CCCeEEEEEeC
Q 039302 319 SFKAH--N---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------------KHPVTSIEWSP 381 (479)
Q Consensus 319 ~~~~h--~---~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------------~~~I~~v~~sp 381 (479)
++... . ..+|-+.|. ++ .+++..-.++.|.+.|.++++ .+..+... ....+.|+|+|
T Consensus 161 ~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~----V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 161 TITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGK----VTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp EEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCB----EEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred EEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCc----EEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 44321 1 346778887 55 677777678899999999988 66666532 13568999999
Q ss_pred CCCCEEEEEe
Q 039302 382 HEGSTLAVSS 391 (479)
Q Consensus 382 ~~~~~las~s 391 (479)
....++++|-
T Consensus 235 ~~~~lfVTGK 244 (262)
T 3nol_A 235 EHHRLFVTGK 244 (262)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEECC
Confidence 7756666653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.2e-05 Score=67.49 Aligned_cols=189 Identities=10% Similarity=0.022 Sum_probs=122.4
Q ss_pred EEEecCCcce--eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCV--NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V--~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+..++|...- ..+.|.. ..+..+.+.+|.|+++|+.+ ++.+..+-....-.-.++
T Consensus 46 v~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~T---------------------gkv~~~~l~~~~FgeGit 102 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLES---------------------AQPVWMERLGNIFAEGLA 102 (268)
T ss_dssp EEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSC---------------------SSCSEEEECTTCCEEEEE
T ss_pred EEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCC---------------------CcEEeEECCCCcceeEEE
Confidence 4566787655 5777773 47888889999999999987 455555411111223355
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+. +....+..-.++.+.+||..+.+.... ..+.+. -..++ +++. .|+.+..++.|.++|..+.+ .+.++
T Consensus 103 ~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t--i~~~~e---GwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~-v~~~I 171 (268)
T 3nok_A 103 SD--GERLYQLTWTEGLLFTWSGMPPQRERT--TRYSGE---GWGLC--YWNG-KLVRSDGGTMLTFHEPDGFA-LVGAV 171 (268)
T ss_dssp EC--SSCEEEEESSSCEEEEEETTTTEEEEE--EECSSC---CCCEE--EETT-EEEEECSSSEEEEECTTTCC-EEEEE
T ss_pred Ee--CCEEEEEEccCCEEEEEECCcCcEEEE--EeCCCc---eeEEe--cCCC-EEEEECCCCEEEEEcCCCCe-EEEEE
Confidence 54 432555566788999999987654322 112222 12344 4566 45555568999999999875 44444
Q ss_pred ec--CC---CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------------CCCeEEEEEeCC
Q 039302 321 KA--HN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------------KHPVTSIEWSPH 382 (479)
Q Consensus 321 ~~--h~---~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------------~~~I~~v~~sp~ 382 (479)
.. +. ..++-+.|. ++ .+++..-.+..|.+.|.++++ .+..+... ..-.+.|+|+|.
T Consensus 172 ~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 172 QVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGT----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp ECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCB----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCc----EEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 32 21 245778887 55 677766678899999999988 66665431 135689999998
Q ss_pred CCCEEEEEe
Q 039302 383 EGSTLAVSS 391 (479)
Q Consensus 383 ~~~~las~s 391 (479)
...+|+||-
T Consensus 246 ~~rlfVTGK 254 (268)
T 3nok_A 246 SGRIFMTGK 254 (268)
T ss_dssp TCCEEEEET
T ss_pred CCEEEEeCC
Confidence 777777774
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-07 Score=89.79 Aligned_cols=166 Identities=13% Similarity=0.036 Sum_probs=82.2
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-eE-EEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-GY-AIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~-~l~~s~~~~~ 247 (479)
+.+.+..+..++ .++++++.||.|+.||..+ ++.+..+..+... +. +..+. .+ +
T Consensus 38 ~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~t---------------------G~~~w~~~~~~~~~~~~sp~~~-~~-~ 93 (369)
T 2hz6_A 38 DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKN---------------------NEGLTKLPFTIPELVQASPCRS-SD-G 93 (369)
T ss_dssp CCSCCCC------CCEEECTTTCCEEEC--------------------------CCSEECSCCHHHHHTTCSCC------
T ss_pred CCceecceEcCC-CEEEEeCCCCEEEEEECCC---------------------CceeeeeeccCccccccCceEe-cC-C
Confidence 455555555666 5666778999999999876 3333333322110 10 00011 23 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
.|++|+.++.|+.||..+++... .+..+. ...++|.+. .+++++.|+.|+.||.++++ .+..+..+. .
T Consensus 94 ~v~~g~~dg~v~a~D~~tG~~~w----~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~-~~W~~~~~~--~ 161 (369)
T 2hz6_A 94 ILYMGKKQDIWYVIDLLTGEKQQ----TLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRE-LRWNATYFD--Y 161 (369)
T ss_dssp -CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSS-CCCEEEEEE--E
T ss_pred EEEEEeCCCEEEEEECCCCcEEE----EecCCC----cccccccCC-EEEEEecCCEEEEEECCCCC-EEEeEeccc--c
Confidence 78888889999999998865421 122222 234566666 78888899999999999886 333332111 1
Q ss_pred EEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 328 NVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 328 ~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
....+..+. ...+++++.+|.|+.||.++++ .+..+.. ..++..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~----~~W~~~~-~~pv~~ 207 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD----VLWIQNY-ASPVVA 207 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC----EEEEEEC-SSCEEE
T ss_pred cCccccCCccccceEEEECCCCEEEEEECCCCc----EEEEecC-CCceEE
Confidence 222333321 1346678899999999999887 5666553 445443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00013 Score=77.03 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=98.7
Q ss_pred EEEeCCCCCCeEEEEeCCCe-------------------EEEEecCCCCc-cccCCCCcc----cCCCcE--EEEEECCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSC-------------------IHLWEPASDAT-WNVDPNPFI----GHAASV--EDLQWSPT 291 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~-------------------I~lwd~~~~~~-~~~~~~~~~----~h~~~V--~~l~~sp~ 291 (479)
.+++.|... +++.+..++. |..||..+++. |........ ....++ .++.+.-.
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 567778775 8888887764 99999988765 221111000 011222 23333211
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC----------------------------C-----------CEEEEEE
Q 039302 292 ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN----------------------------A-----------DVNVISW 332 (479)
Q Consensus 292 ~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~----------------------------~-----------~v~~l~~ 332 (479)
....++.++.+|.|+++|.++++ .+....... . .-..++|
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGE-LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred EEEEEEEECCCCeEEEEECCCCC-EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 11368889999999999999986 332111000 0 0112678
Q ss_pred cCCCCcEEEEEeC---------------------------------------------CCeEEEEeCCCCCCCCceEEEe
Q 039302 333 NRLASCLLASGSD---------------------------------------------DGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 333 ~p~~~~~l~sgs~---------------------------------------------dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
+|.. .+|+++.. +|.|..||+.+++ .+-.+
T Consensus 397 dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~----~~W~~ 471 (689)
T 1yiq_A 397 NPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ----AAWEV 471 (689)
T ss_dssp ETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE----EEEEE
T ss_pred CCCC-CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC----eEeEc
Confidence 8887 55555422 3789999999988 66666
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 368 EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 368 ~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..+. ++....+...+ .++++++.|+.|+.||.++++
T Consensus 472 ~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 472 PYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred cCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCc
Confidence 6543 33333455534 788889999999999999984
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00086 Score=64.37 Aligned_cols=161 Identities=8% Similarity=-0.051 Sum_probs=108.4
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
....+++|.+....++++-...+.|..+++.......+ ..........+++.+.+.+++++-...+.|.+.++...
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~----~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV----VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE----EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 45789999987652444445678899999876432211 11112345788998877657777777889999998765
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s 391 (479)
. ....+...-...+.|+++|.++.++.+-... +.|..+++.... ...+ ...-...+.|+|+|.++.++.+-+
T Consensus 149 ~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-----~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 149 H-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----RRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp S-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----CEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred c-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-----cEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 3 2222233345678999999775777776666 889999886543 2222 222345689999997767777777
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
..+.|..+++...
T Consensus 223 ~~~~I~~~~~dG~ 235 (349)
T 3v64_C 223 KHHVIERANLDGS 235 (349)
T ss_dssp TTTEEEEEETTSC
T ss_pred CCCEEEEEeCCCC
Confidence 7889999998653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00046 Score=64.86 Aligned_cols=237 Identities=8% Similarity=0.049 Sum_probs=139.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
..+.-......++|.+++ .++++-...+.|..||.... ....+. ......++++.+
T Consensus 26 ~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~----------------------~~~~~~-~~~~p~gia~~~ 81 (306)
T 2p4o_A 26 TSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDGN----------------------QQIHAT-VEGKVSGLAFTS 81 (306)
T ss_dssp EEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTCC----------------------EEEEEE-CSSEEEEEEECT
T ss_pred EeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCCc----------------------eEEEEe-CCCCceeEEEcC
Confidence 334334678899999988 57777678899999987651 111121 224688999999
Q ss_pred CCCCeEEEEeC-CC-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 244 VAPGRLVSGDC-NS-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 244 ~~~~~l~sg~~-dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++. ++++... ++ .|..++..++..... ... ........++..+.+. .+++-..++.|..+|...+...+....
T Consensus 82 dG~-l~vad~~~~~~~v~~~d~~~g~~~~~--~~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~ 156 (306)
T 2p4o_A 82 NGD-LVATGWNADSIPVVSLVKSDGTVETL--LTL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEH 156 (306)
T ss_dssp TSC-EEEEEECTTSCEEEEEECTTSCEEEE--EEC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCc-EEEEeccCCcceEEEEcCCCCeEEEE--EeC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence 986 5555433 22 466677655433111 001 1122334555555443 556555688999999865421111100
Q ss_pred ---------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 322 ---------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 322 ---------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
..-...+.| ++++..++++-...+.|.+||+.. +.. .....+.. ......+++++++ +++++..
T Consensus 157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~--~~~~~~~~-~~~P~gi~vd~dG-~l~va~~ 230 (306)
T 2p4o_A 157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP--GEPEIFVE-QTNIDDFAFDVEG-NLYGATH 230 (306)
T ss_dssp GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB--CCCEEEEE-SCCCSSEEEBTTC-CEEEECB
T ss_pred CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC--CccEEEec-cCCCCCeEECCCC-CEEEEeC
Confidence 111245666 777756777777888999999874 221 01122211 1345678999965 7777777
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEE-eecCCCCeeeEEEe---CCCCcEEEEEcC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLF-IHQGQKDLKELHWH---TQVPGMIVSTAA 459 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~h~g~~~V~~v~w~---p~~~~ll~s~~~ 459 (479)
..+.|.+++.. +.. ..+. ...+-..+++++|. |++..|+++.+.
T Consensus 231 ~~~~V~~~~~~-G~~-----------------------~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 IYNSVVRIAPD-RST-----------------------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTCCEEEECTT-CCE-----------------------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCeEEEECCC-CCE-----------------------EEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 78899999864 210 1111 11222458999998 787777777664
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00059 Score=66.49 Aligned_cols=163 Identities=8% Similarity=-0.066 Sum_probs=108.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
.....+++|.+....++++-...+.|..+++.......+ +.........+++.+.+.+++++-...+.|.+.++..
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~----~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV----VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE----ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE----EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 346789999987652444545678899999876432111 1111234567888887765777777788899988875
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.. ....+...-...+.|+++|.++.++++-... +.|..+++.... ........-...+.|+|+|.++.++++-+
T Consensus 191 ~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 191 AH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp CS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred Cc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC----cEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 43 2222333335679999999775777776666 789998886543 22222233445789999987767777777
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
..+.|..+++...
T Consensus 266 ~~~~I~~~d~dG~ 278 (386)
T 3v65_B 266 KHHVIERANLDGS 278 (386)
T ss_dssp TTTEEEEECTTSC
T ss_pred CCCEEEEEeCCCC
Confidence 7888999998643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.4e-05 Score=78.77 Aligned_cols=152 Identities=13% Similarity=0.246 Sum_probs=87.9
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEEeCC--CCCCeEEEEe-----
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAIDWNP--VAPGRLVSGD----- 253 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~--~~~~~l~sg~----- 253 (479)
..|+.++.+|.|..+|..+ ++.+..+... ......+..+| .+ +.++.++
T Consensus 122 g~v~v~~~dg~l~AlDa~T---------------------G~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~ 179 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKT---------------------GQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEF 179 (689)
T ss_dssp TEEEEECTTSEEEEEETTT---------------------CCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTT
T ss_pred CEEEEEccCCEEEEEECCC---------------------CCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCcc
Confidence 3566678899999999977 3444333321 11111111112 02 2555554
Q ss_pred -CCCeEEEEecCCCCc-cccCCCC---cc-----------------------cCCCcEEEEEECCCCCcEEEEEeCCCc-
Q 039302 254 -CNSCIHLWEPASDAT-WNVDPNP---FI-----------------------GHAASVEDLQWSPTESDVFASCSVDGN- 304 (479)
Q Consensus 254 -~dg~I~lwd~~~~~~-~~~~~~~---~~-----------------------~h~~~V~~l~~sp~~~~~l~s~s~dg~- 304 (479)
.+|.|+.||..+++. |...... .. ++......++++|... +++.++.++.
T Consensus 180 ~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~ 258 (689)
T 1yiq_A 180 GVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSL 258 (689)
T ss_dssp CCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEES
T ss_pred CCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCc
Confidence 368999999988764 3221100 00 1111123578888877 7888877763
Q ss_pred ------------------EEEEEcCCCCceeeEEec--CC-------CCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCC
Q 039302 305 ------------------IAIWDTRVGKSALMSFKA--HN-------ADVNVISWNRLAS--CLLASGSDDGTFSIHDLR 355 (479)
Q Consensus 305 ------------------I~iwD~~~~~~~~~~~~~--h~-------~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr 355 (479)
|..+|.++++ .+-.+.. |. ..+.......++. ..++.++.+|.++++|.+
T Consensus 259 w~~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~ 337 (689)
T 1yiq_A 259 WDPKWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRA 337 (689)
T ss_dssp SCHHHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred cccCCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECC
Confidence 9999999986 4444432 21 1222222222341 378899999999999999
Q ss_pred CCC
Q 039302 356 LLK 358 (479)
Q Consensus 356 ~~~ 358 (479)
+++
T Consensus 338 tG~ 340 (689)
T 1yiq_A 338 TGE 340 (689)
T ss_dssp TCC
T ss_pred CCC
Confidence 987
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-05 Score=72.07 Aligned_cols=174 Identities=14% Similarity=0.018 Sum_probs=108.9
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
.+..++.++.|..+|... +....+..+...+.++...+++ .|..|+.++.|..+|.
T Consensus 109 ~l~v~t~~~~l~~~d~~g----------------------~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTDG----------------------TEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINP 164 (330)
T ss_dssp EEEEECTTSEEEEECTTS----------------------CEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECT
T ss_pred EEEEEecCCEEEEEcCCC----------------------CEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECC
Confidence 455667888999998762 1122232333344555555554 5777888899999998
Q ss_pred CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEE
Q 039302 264 ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASG 343 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg 343 (479)
. +.... .+......+.++...+++. ++ .++ +.|..+| .++. ....+......+.++...+++ . |..+
T Consensus 165 ~-g~~~~----~~~~~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~~g-~-l~v~ 231 (330)
T 3hxj_A 165 D-GTEKW----RFKTNDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISEDG-T-IYVT 231 (330)
T ss_dssp T-SCEEE----EEECSSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSC-EEEEECCSSCCCSCCEECTTS-C-EEEE
T ss_pred C-CCEeE----EEecCCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCc-EEEEEccCCcceeceEECCCC-e-EEEE
Confidence 7 43311 1112234566677777776 44 444 8899999 5554 444454455668888888876 4 5556
Q ss_pred eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 344 SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 344 s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+.++.|..+|. ++. .+..+......+.++...+ + ..|..++.++.|..+|.
T Consensus 232 t~~~gl~~~~~-~g~----~~~~~~~~~~~~~~~~~~~-~-g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 232 SLDGHLYAINP-DGT----EKWRFKTGKRIESSPVIGN-T-DTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ETTTEEEEECT-TSC----EEEEEECSSCCCSCCEECT-T-SCEEEECTTCEEEEECT
T ss_pred cCCCeEEEECC-CCC----EeEEeeCCCCccccceEcC-C-CeEEEecCCCCEEEECC
Confidence 77788888874 333 4555554444455566654 3 45677788888999985
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0017 Score=62.28 Aligned_cols=205 Identities=7% Similarity=-0.111 Sum_probs=132.3
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.....+..++|.+.+..++.+-...+.|+.+++... .....+........+|++.+.+.
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---------------------~~~~~~~~~~~~p~glavd~~~g 128 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------------------NVEEVVSTGLESPGGLAVDWVHD 128 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSCCCEEEEETTTT
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCC---------------------CceEEEeCCCCCccEEEEecCCC
Confidence 334558899999877678878777889999988761 11122222223445677776554
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEE-ecCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSF-KAHN 324 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~-~~h~ 324 (479)
.++++-...+.|.+.++........ ........+.|+++|.+..++.+-... +.|..+++.... ...+ ...-
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~~l----~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~ 202 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRKVL----LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHL 202 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEE----ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEESCCSSC
T ss_pred eEEEEcCCCCeEEEEcCCCCceEEE----EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCC
Confidence 2455555678999999865322111 112234578999999777567666655 789888887543 2222 2233
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
...+.|+|+|.+..++++-+..+.|..+|+.... ....+.........|++. .+.++.+-...+.|..++...+
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~----~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH----RKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc----eEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCC
Confidence 4578999998776777777778899999987533 222233334456778884 3477777777888988885444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00095 Score=65.04 Aligned_cols=205 Identities=7% Similarity=-0.110 Sum_probs=131.5
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
....+..++|.+.+..++.+-...+.|+.+++... .....+.........|++.+.+..
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---------------------~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------------------NVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------CEEEEECSSCSCCCCEEEETTTTE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---------------------CcEEEEeCCCCCccEEEEEeCCCe
Confidence 34568899999877678888777889999998761 111112222223456777765542
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
++++-...+.|.+.++.......+ +.........|+++|.+..++.+-... +.|..+++.... ........-..
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~~l----~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~ 247 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRKVL----LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFW 247 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCEEE----ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSC
T ss_pred EEEEcCCCCeEEEEeCCCCceEEe----ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCC
Confidence 455555677888888764322111 122234678999999877566665555 788888887643 22222233345
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+.|+|+|.+..++++-+..+.|..+|+.... ....+.........|++. .+.++.+-...+.|..++...+
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSH----RKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTSCS----CEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe----eEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCC
Confidence 78999998776777887788899999987533 222233334456778884 3477777777889998885444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0014 Score=61.83 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=105.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCC---CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASD---ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~---~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
.....+++|.+.+...+++-...+.|..+++... .... ..+...-.....+++.+.+.+++++-...+.|.+++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~---~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE---EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE---EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 4467899999876524445555689999998651 1111 011111234578899876665777777789999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~l 387 (479)
+.... ....+.......+.++++|.++.++++.... +.|...++.... ...+ ...-...+.|+|+|.++.++
T Consensus 106 ~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-----~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 106 TKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp TTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-----eEEEEECCCCCceEEEEeccCCEEE
Confidence 87543 2222233345678999999775666666544 788888875332 2222 22334678999999776666
Q ss_pred EEEeCCCcEEEEECCCC
Q 039302 388 AVSSADNQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~ 404 (479)
.+-+..+.|..+|+...
T Consensus 180 ~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EEECCCCeEEEEecCCC
Confidence 77777889999998743
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.8e-05 Score=77.69 Aligned_cols=201 Identities=8% Similarity=-0.008 Sum_probs=128.2
Q ss_pred eEEEEec-----CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEe-C-CC
Q 039302 173 NRIRAMS-----QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDW-N-PV 244 (479)
Q Consensus 173 ~~v~~~p-----~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~-s-~~ 244 (479)
.....+. +|..++++...++.|.+.|+.. .+....+.- .......+++ + |+
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t---------------------~~~~~ii~ip~g~~phg~~~~~~p~ 146 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDV---------------------MKCDAILEIPNAKGIHGLRPQKWPR 146 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTT---------------------TEEEEEEECSSCCSEEEEEECCSSB
T ss_pred CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCC---------------------ceEeeEEeCCCCCCCcceeeeecCC
Confidence 3345555 7777888888888999999988 344442321 2235778887 4 78
Q ss_pred CCCeEEEEe------------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----
Q 039302 245 APGRLVSGD------------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD---- 302 (479)
Q Consensus 245 ~~~~l~sg~------------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d---- 302 (479)
+. ++++++ .++.+.+.|..+...... ....+ ....++++|+++..++++...
T Consensus 147 ~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q--I~Vgg---~pd~~~~spdGk~~~vt~~~se~~~ 220 (595)
T 1fwx_A 147 SN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ--VLVSG---NLDNCDADYEGKWAFSTSYNSEKGM 220 (595)
T ss_dssp CS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE--EEESS---CCCCEEECSSSSEEEEEESCTTCCS
T ss_pred Cc-EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE--EEeCC---CccceEECCCCCEEEEEecCcccCc
Confidence 77 777663 345788888876433110 11111 234567899988444444222
Q ss_pred ---------------------------------CcEEEEEcCC--CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC
Q 039302 303 ---------------------------------GNIAIWDTRV--GKSALMSFKAHNADVNVISWNRLASCLLASGSDDG 347 (479)
Q Consensus 303 ---------------------------------g~I~iwD~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg 347 (479)
+.|.+.|.++ ++..+..+.. .....++.++|++..+++++..+.
T Consensus 221 ~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~ 299 (595)
T 1fwx_A 221 TLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSP 299 (595)
T ss_dssp SHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSS
T ss_pred chhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCC
Confidence 2477777776 3211223322 234577899999977778888899
Q ss_pred eEEEEeCCCCCC--------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 348 TFSIHDLRLLKG--------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 348 ~i~iwDlr~~~~--------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
+|.++|+.+.+. ....+.... -......++|+|++ ....+.-.|++|.+||+..
T Consensus 300 ~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 300 TVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred eEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 999999986520 001233333 24457889999976 7777777899999999865
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0023 Score=58.09 Aligned_cols=202 Identities=11% Similarity=0.097 Sum_probs=129.2
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--cCCCCceEEEEeCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--GGHKDEGYAIDWNPV 244 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~ 244 (479)
+-.+.+..++|+|++..++|+...++.|...|... +.+.++ .+. ...-+|++.++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g----------------------~v~~~i~l~g~-~D~EGIa~~~~ 80 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG----------------------DLIRTIPLDFV-KDLETIEYIGD 80 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC----------------------CEEEEEECSSC-SSEEEEEECST
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC----------------------CEEEEEecCCC-CChHHeEEeCC
Confidence 55578999999998877888778888888888763 223333 222 45678888877
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCc-cccCCC--Cc--ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC--Ccee
Q 039302 245 APGRLVSGDCNSCIHLWEPASDAT-WNVDPN--PF--IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG--KSAL 317 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~-~~~~~~--~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~--~~~~ 317 (479)
+. ++++.-.++.+.++++..... ...... .+ ...+.....|+|+|.+..+++ +.......||.++.. ...+
T Consensus 81 g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQ-FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TE-EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCC
T ss_pred CE-EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCce
Confidence 65 556665678999998866543 111011 11 123556899999999874555 444444455544311 1111
Q ss_pred eEEe-------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC---------CCeEEEEEeC
Q 039302 318 MSFK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK---------HPVTSIEWSP 381 (479)
Q Consensus 318 ~~~~-------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~---------~~I~~v~~sp 381 (479)
.... .+...+.+++++|..+.+++.......|.++|.... ++..+.-.. ..--.|+|.|
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-----~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-----VIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----EEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-----EEEEEEcCCccCCcccccCCCCeeEECC
Confidence 2111 133467899999998888888888899999997633 344333221 2557899999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 039302 382 HEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwd 400 (479)
++ +++++ |+-+.++++.
T Consensus 234 ~G-~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 234 SG-NIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TC-CEEEE-ETTTEEEEEE
T ss_pred CC-CEEEE-cCCceEEEEE
Confidence 65 64444 7777666664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.003 Score=59.58 Aligned_cols=213 Identities=8% Similarity=-0.065 Sum_probs=130.9
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
+..-..+..+.|.+.+..++.+-...+.|+.+++...... ......+...-....+|++.+.+
T Consensus 26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-----------------~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------SSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-----------------cccEEEEeCCCCCcCEEEEeecC
Confidence 3445667899999877678888777899999998651000 01111222222344677777655
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEE-ecC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSF-KAH 323 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~-~~h 323 (479)
..++++-...+.|.+.++........ ..........++++|.+..++.+.... +.|..+++.... ...+ ...
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~----~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~ 162 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTL----FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTEN 162 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEE----EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSS
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEE----EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECC
Confidence 42455556678999999864322111 111234678999999777566665443 788888886542 2222 223
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
-...+.|+|+++++.++++-+..+.|..+|+..... ..+............|++. ++.++.+-...++|..++...
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~--~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--EEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCC
Confidence 356789999998767777777788999999874331 1222211123345778885 347777777788999998765
Q ss_pred CC
Q 039302 404 EK 405 (479)
Q Consensus 404 ~~ 405 (479)
+.
T Consensus 239 g~ 240 (316)
T 1ijq_A 239 GS 240 (316)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=8.1e-05 Score=78.31 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=90.7
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CC-ceEEEEeCC--CCCCeEEEEeC-----
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KD-EGYAIDWNP--VAPGRLVSGDC----- 254 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~-~v~~l~~s~--~~~~~l~sg~~----- 254 (479)
.|..++.++.|..+|..+ ++.+..+..+ .. ....+.-.| .+ +.++.++.
T Consensus 130 ~v~v~~~dg~l~alD~~t---------------------G~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~ 187 (677)
T 1kb0_A 130 KVYVGAWDGRLIALDAAT---------------------GKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYG 187 (677)
T ss_dssp EEEEECTTSEEEEEETTT---------------------CCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTC
T ss_pred EEEEEcCCCEEEEEECCC---------------------CCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccC
Confidence 555668899999999987 4444444433 10 000000011 12 25666553
Q ss_pred -CCeEEEEecCCCCc-cccCCCCcc---------------------------cCCCcEEEEEECCCCCcEEEEEeCCC--
Q 039302 255 -NSCIHLWEPASDAT-WNVDPNPFI---------------------------GHAASVEDLQWSPTESDVFASCSVDG-- 303 (479)
Q Consensus 255 -dg~I~lwd~~~~~~-~~~~~~~~~---------------------------~h~~~V~~l~~sp~~~~~l~s~s~dg-- 303 (479)
+|.|+.+|..+++. |......-. +.......++++|.+. +++.++.++
T Consensus 188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~ 266 (677)
T 1kb0_A 188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSP 266 (677)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEES
T ss_pred CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCcc
Confidence 68999999988754 221110000 1111223578888887 677666553
Q ss_pred -----------------cEEEEEcCCCCceeeEEec--CC-------CCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCC
Q 039302 304 -----------------NIAIWDTRVGKSALMSFKA--HN-------ADVNVISWNRLAS--CLLASGSDDGTFSIHDLR 355 (479)
Q Consensus 304 -----------------~I~iwD~~~~~~~~~~~~~--h~-------~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr 355 (479)
.|..+|.++++ .+-.+.. |. .....+....++. ..|+.++.+|.|+++|.+
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~ 345 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT 345 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC
Confidence 59999999986 4444432 21 1122233333442 578899999999999999
Q ss_pred CCCCCCceEEEee
Q 039302 356 LLKGGDSVVAHFE 368 (479)
Q Consensus 356 ~~~~~~~~~~~~~ 368 (479)
+++ ++..+.
T Consensus 346 tG~----~l~~~~ 354 (677)
T 1kb0_A 346 NGK----FISAKN 354 (677)
T ss_dssp TCC----EEEEEE
T ss_pred CCC----Eecccc
Confidence 988 555543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00034 Score=62.85 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=120.1
Q ss_pred EEEecCCcc--eeEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-ceE
Q 039302 163 LRKVAHQGC--VNRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-EGY 237 (479)
Q Consensus 163 ~~~~~H~~~--V~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~ 237 (479)
+...+|... +..+.|++ + .+..+.+..| .|+++|+.+ ++.+..+..... -.-
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~t---------------------gkv~~~~~l~~~~fge 68 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLET---------------------GRILQRAEVPPPYFGA 68 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTT---------------------CCEEEEEECCTTCCEE
T ss_pred EEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCC---------------------CCEEEEEeCCCCccee
Confidence 455688765 45889987 4 6777767754 899999987 455555543222 223
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++.. +....+..-.++.+.++|..+...... ..+.++ -..++ +++..+++|- .++.|.++|..+.+ .+
T Consensus 69 Gi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~t--i~~~~~---Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~-~~ 137 (243)
T 3mbr_X 69 GIVAW--RDRLIQLTWRNHEGFVYDLATLTPRAR--FRYPGE---GWALT--SDDSHLYMSD-GTAVIRKLDPDTLQ-QV 137 (243)
T ss_dssp EEEEE--TTEEEEEESSSSEEEEEETTTTEEEEE--EECSSC---CCEEE--ECSSCEEEEC-SSSEEEEECTTTCC-EE
T ss_pred EEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEE--EeCCCC---ceEEe--eCCCEEEEEC-CCCeEEEEeCCCCe-EE
Confidence 33443 332444556788999999987654321 112221 13444 4566455554 58899999999875 44
Q ss_pred eEEecCC-----CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------------CCCeEEEEE
Q 039302 318 MSFKAHN-----ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------------KHPVTSIEW 379 (479)
Q Consensus 318 ~~~~~h~-----~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------------~~~I~~v~~ 379 (479)
.++.... ..++-+.|. ++ .+++..-.+..|.+.|.++++ .+..+... ..-.+.|+|
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~----V~~~idl~~l~~~~~~~~~~~~~vlNGIA~ 211 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGK----VVAWIDLQALVPDADALTDSTNDVLNGIAF 211 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCB----EEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred EEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCC----EEEEEECCcCccccccccCCcCCceEEEEE
Confidence 4443211 356777777 44 666666678899999999988 66665421 135689999
Q ss_pred eCCCCCEEEEEeC
Q 039302 380 SPHEGSTLAVSSA 392 (479)
Q Consensus 380 sp~~~~~las~s~ 392 (479)
+|....+++||-.
T Consensus 212 d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 212 DAEHDRLFVTGKR 224 (243)
T ss_dssp ETTTTEEEEEETT
T ss_pred cCCCCEEEEECCC
Confidence 9977666776643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0029 Score=61.89 Aligned_cols=167 Identities=12% Similarity=0.032 Sum_probs=107.4
Q ss_pred CCCceEEEEeCCCCCCeEEEE-eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 232 HKDEGYAIDWNPVAPGRLVSG-DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg-~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
....+.+|+|.+... .|... ...+.|+.+++......................|++.+.+.+++++-...+.|.+.++
T Consensus 110 ~~~~~~~l~~d~~~~-~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 110 NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp SCSCEEEEEEETTTT-EEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred ccCcceEEeeeeccC-ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 445788999998765 55444 4567899998865221000001112223467889999866657777778889999998
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.... ....+.........|+++|.++.++.+-.. .+.|...++.... ........-...+.|+++|.++.++.+
T Consensus 189 ~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~----~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 189 KGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp TTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS----CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc----cEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 8653 222333344557899999977466666533 4789888887544 222223333567899999977666666
Q ss_pred EeCCCcEEEEECCCC
Q 039302 390 SSADNQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~ 404 (479)
-+..+.|..+|+...
T Consensus 264 D~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 264 DSKLHSISSIDVNGG 278 (400)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred ECCCCEEEEEeCCCC
Confidence 666789999998654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00026 Score=64.13 Aligned_cols=203 Identities=13% Similarity=0.078 Sum_probs=120.9
Q ss_pred ceEEEEeCCCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
-...|.|+ ++. ++.+.+.+| .|+.+|+.+++.... ..+.. ...-..++.. +..++++.-.++.+.+||..+
T Consensus 44 ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~--~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 44 FTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQ--IELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEE--EECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTT
T ss_pred ccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEE--EecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECcc
Confidence 34788888 454 666666666 999999998765332 11211 1112334443 444677777799999999999
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--C---CCeEEEEEeCCCCCEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--K---HPVTSIEWSPHEGSTL 387 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~---~~I~~v~~sp~~~~~l 387 (479)
.+ .+.++...... ..++ +++..++++- .++.|.++|..+.+ .+.++... . ..++.+.|. ++.++
T Consensus 117 ~~-~~~ti~~~~eG-~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~----v~~~I~V~~~g~~~~~lNELe~~--~G~ly 185 (262)
T 3nol_A 117 LR-QVRSFNYDGEG-WGLT--HNDQYLIMSD-GTPVLRFLDPESLT----PVRTITVTAHGEELPELNELEWV--DGEIF 185 (262)
T ss_dssp CC-EEEEEECSSCC-CCEE--ECSSCEEECC-SSSEEEEECTTTCS----EEEEEECEETTEECCCEEEEEEE--TTEEE
T ss_pred Cc-EEEEEECCCCc-eEEe--cCCCEEEEEC-CCCeEEEEcCCCCe----EEEEEEeccCCccccccceeEEE--CCEEE
Confidence 86 55566533222 2334 4554555554 47889999999887 56665431 2 335568887 44666
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
+..-.++.|.+.|..+++.... .. ...+.+.....+......+.|+|+|....++++|-.-- ++|.+
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~-----------Id-~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp-~~~ev 252 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGI-----------ID-LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP-KVFEI 252 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEE-----------EE-CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS-EEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEE-----------EE-CCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC-ceEEE
Confidence 6666788999999988752100 00 00000000001111124789999999887777775543 55544
Q ss_pred e
Q 039302 468 S 468 (479)
Q Consensus 468 ~ 468 (479)
.
T Consensus 253 ~ 253 (262)
T 3nol_A 253 T 253 (262)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-05 Score=72.10 Aligned_cols=135 Identities=16% Similarity=0.030 Sum_probs=90.5
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
+.|..++.++.|..+|.. +.... .+......+.++...+++. +..++.++.|..+|.. ++ ....+......
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~----~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~ 178 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKW----RFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT-EKWRFKTNDAI 178 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEE----EEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC-EEEEEECSSCC
T ss_pred CEEEEEecCCEEEEEcCC-CCEEE----EEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC-EeEEEecCCCc
Confidence 378889889999999987 33311 1112233455566676665 6667778999999998 54 44455545556
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+.++...+++ .++ .++ +.|..+| .++. .+..+......+.++...+++ .|..++.++.|..++.
T Consensus 179 ~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~----~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 179 TSAASIGKDG-TIY-FGS--DKVYAIN-PDGT----EKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP 242 (330)
T ss_dssp CSCCEECTTC-CEE-EES--SSEEEEC-TTSC----EEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT
T ss_pred eeeeEEcCCC-EEE-EEe--CEEEEEC-CCCc----EEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC
Confidence 7777787777 444 444 8899999 6555 556666556678888888743 4555667788888864
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0062 Score=55.27 Aligned_cols=207 Identities=10% Similarity=0.087 Sum_probs=126.9
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
.+.+-...+.+|+|+|++..++++...++.|...|+. +..... .++.+ ......|++.+++. ++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~--i~l~g-~~D~EGIa~~~~g~-~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT--IPLDF-VKDLETIEYIGDNQ-FVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE--EECSS-CSSEEEEEECSTTE-EEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE--EecCC-CCChHHeEEeCCCE-EEEEECCCCcEEE
Confidence 3445556899999999875355557778889999986 443221 12222 25688999998876 6666656788999
Q ss_pred EEcCCCCc--eeeEE------ecCCCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCCCCCceEEEee-------cCC
Q 039302 308 WDTRVGKS--ALMSF------KAHNADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKGGDSVVAHFE-------YHK 371 (479)
Q Consensus 308 wD~~~~~~--~~~~~------~~h~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~~~~~~~~~~~~~-------~h~ 371 (479)
+++..... .+... ...+.....|+|+|.+..++++.-.+. .|..|+-.... ..+..+. .+.
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~---~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS---NELHISKDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS---SCCEEEECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC---Cceeeecchhhcccccc
Confidence 98876542 11111 123456789999999855555444443 45555511111 0122221 133
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-------CCCeeeE
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-------QKDLKEL 444 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-------~~~V~~v 444 (479)
..+.+++++|..+.+++.+.....|.++|....- ...+....+ ....-.|
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-----------------------~~~~~L~~g~~~l~~~~~qpEGi 229 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-----------------------IGEMSLTKGSRGLSHNIKQAEGV 229 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-----------------------EEEEECSTTGGGCSSCCCSEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-----------------------EEEEEcCCccCCcccccCCCCee
Confidence 4578999999887888888888899999976431 011111111 1136789
Q ss_pred EEeCCCCcEEEEEcCCCceEEeee
Q 039302 445 HWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 445 ~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|.+++. +.+++-.+ .+|++.
T Consensus 230 a~d~~G~-lyIvsE~n--~~y~f~ 250 (255)
T 3qqz_A 230 AMDASGN-IYIVSEPN--RFYRFT 250 (255)
T ss_dssp EECTTCC-EEEEETTT--EEEEEE
T ss_pred EECCCCC-EEEEcCCc--eEEEEE
Confidence 9999995 66654444 555543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0065 Score=65.08 Aligned_cols=247 Identities=11% Similarity=0.088 Sum_probs=145.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.++...+++ .+.+ |+.++-|.+||.....-.. .. ........-....|+++...+++ .
T Consensus 214 ~~~i~~i~~d~~g-~lwi-gt~~~Gl~~~~~~~~~~~~--~~------------~~~~~~~~l~~~~i~~i~~d~~g--~ 275 (795)
T 4a2l_A 214 TKQIQAILQQSPT-RIWV-ATEGAGLFLINPKTKEIKN--YL------------HSPSNPKSISSNYIRSLAMDSQN--R 275 (795)
T ss_dssp CCCEEEEEEEETT-EEEE-EEBSSCEEEEETTTTEEEE--EC------------CCTTCTTSCSCSBEEEEEECTTS--C
T ss_pred CCeeEEEEEcCCC-CEEE-EECCCCeEEEeCCCCeEEE--ee------------cCCCCccccCCCeEEEEEEcCCC--C
Confidence 4568888887777 4443 3444348888876521000 00 00000000123468999888776 4
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCC---CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPN---PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA--- 322 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~--- 322 (479)
|..|+.+ -|.+|+..+......... ...-....|.++...+++. +-.|+.++-|.+|+..... ...+..
T Consensus 276 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~ 350 (795)
T 4a2l_A 276 LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNR--FKNIRNIPY 350 (795)
T ss_dssp EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGS--SEEECCCTT
T ss_pred EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCccc--ceEEcCCCC
Confidence 6666655 588898765432111111 0111245799999999887 5567777789999876543 222211
Q ss_pred ----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---------cCCCCeEEEEEeCCCCCEEEE
Q 039302 323 ----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---------YHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 323 ----h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---------~h~~~I~~v~~sp~~~~~las 389 (479)
....|.++...+++ . |-.|+.++-|..||..+.. ...+. .....|.++...+++ .+|..
T Consensus 351 ~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWi 422 (795)
T 4a2l_A 351 KNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQR-----FTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYI 422 (795)
T ss_dssp SSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCC-----EEEECCC------CCSCSCEEEEEEETTT-TEEEE
T ss_pred CCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCc-----EEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEE
Confidence 23569999998877 4 5557888789999987654 22222 123578999988744 64666
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
|+.++-|.+||....... .... . .+. .....|.++...+++. +.+++. +||.+|++.
T Consensus 423 gt~~~Gl~~~d~~~~~~~------------~~~~--~-~~~-----l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 423 GTHAGGLSILHRNSGQVE------------NFNQ--R-NSQ-----LVNENVYAILPDGEGN-LWLGTL-SALVRFNPE 479 (795)
T ss_dssp EETTTEEEEEETTTCCEE------------EECT--T-TSC-----CSCSCEEEEEECSSSC-EEEEES-SCEEEEETT
T ss_pred EeCcCceeEEeCCCCcEE------------Eeec--C-CCC-----cCCCeeEEEEECCCCC-EEEEec-CceeEEeCC
Confidence 777777999998765310 0000 0 000 1123688898888875 555555 778888754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00091 Score=60.03 Aligned_cols=212 Identities=10% Similarity=0.033 Sum_probs=126.0
Q ss_pred CcEEecCCCC--ceEEEEeCCCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe
Q 039302 225 PLVKFGGHKD--EGYAIDWNPVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 225 ~~~~~~~h~~--~v~~l~~s~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 300 (479)
.+.++ .|.. -...|.|+. +. ++.+.+..| .|+.+|+.+++.... ..+..+ .--..+++. +..+++..-
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgkv~~~--~~l~~~-~fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGRILQR--AEVPPP-YFGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCCEEEE--EECCTT-CCEEEEEEE--TTEEEEEES
T ss_pred EEEEc-CCCCccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCCEEEE--EeCCCC-cceeEEEEe--CCEEEEEEe
Confidence 34445 4654 455899987 33 566666654 899999988765331 111111 111334443 444777777
Q ss_pred CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CC---CCeE
Q 039302 301 VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HK---HPVT 375 (479)
Q Consensus 301 ~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~---~~I~ 375 (479)
.++.+.+||..+.+ .+.++.....+ ..++ +++..+++|- .++.|.++|..+.+ .+.++.. +. ..++
T Consensus 83 ~~~~v~v~D~~tl~-~~~ti~~~~~G-wglt--~dg~~L~vSd-gs~~l~~iDp~t~~----~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 83 RNHEGFVYDLATLT-PRARFRYPGEG-WALT--SDDSHLYMSD-GTAVIRKLDPDTLQ----QVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp SSSEEEEEETTTTE-EEEEEECSSCC-CEEE--ECSSCEEEEC-SSSEEEEECTTTCC----EEEEEECEETTEECCCEE
T ss_pred eCCEEEEEECCcCc-EEEEEeCCCCc-eEEe--eCCCEEEEEC-CCCeEEEEeCCCCe----EEEEEEEccCCcccccce
Confidence 89999999999885 55666543332 3444 4454555554 58899999999987 5666554 22 3456
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE-EeecCCCCeeeEEEeCCCCcEE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL-FIHQGQKDLKELHWHTQVPGMI 454 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~h~g~~~V~~v~w~p~~~~ll 454 (479)
.+.|. ++.+++..-.++.|.+.|..+++.... ... ..+.+... ..+....-.+.|+|+|....++
T Consensus 154 eLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~-----------idl-~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 154 ELEWV--NGELLANVWLTSRIARIDPASGKVVAW-----------IDL-QALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEECTTTCBEEEE-----------EEC-GGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred eeEEe--CCEEEEEECCCCeEEEEECCCCCEEEE-----------EEC-CcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 77877 446676666788999999988752100 000 00000000 0011113478999999988777
Q ss_pred EEEcCCCceEEeee
Q 039302 455 VSTAADGFNILMPS 468 (479)
Q Consensus 455 ~s~~~dgi~iw~~~ 468 (479)
+++-.-- ++|.+.
T Consensus 220 VTGK~wp-~~~~v~ 232 (243)
T 3mbr_X 220 VTGKRWP-MLYEIR 232 (243)
T ss_dssp EEETTCS-EEEEEE
T ss_pred EECCCCC-cEEEEE
Confidence 7776543 555543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0005 Score=62.34 Aligned_cols=199 Identities=8% Similarity=0.043 Sum_probs=122.4
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
-...|.|+. +. ++++.+.+|.|+++|+.+++..... +.. ...-..+++. +..++++.-.++.+.+||..+.+
T Consensus 56 ftqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQPVWME---RLG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEET-TE-EEEEETTTTEEEECCSSCSSCSEEE---ECT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEEC-CE-EEEEcCCCCEEEEEECCCCcEEeEE---CCC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc
Confidence 346888874 33 7777888899999999987653321 221 1122445554 44477777789999999999885
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCC---CeEEEEEeCCCCCEEEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKH---PVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~---~I~~v~~sp~~~~~las 389 (479)
.+.++..... -..+++ ++ ..|+.+..++.|.++|..+.+ .+.++.. +.. .++.+.|. ++.+++.
T Consensus 128 -~~~ti~~~~e-GwGLt~--Dg-~~L~vSdGs~~l~~iDp~T~~----v~~~I~V~~~g~~v~~lNeLe~~--dG~lyan 196 (268)
T 3nok_A 128 -RERTTRYSGE-GWGLCY--WN-GKLVRSDGGTMLTFHEPDGFA----LVGAVQVKLRGQPVELINELECA--NGVIYAN 196 (268)
T ss_dssp -EEEEEECSSC-CCCEEE--ET-TEEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEE--TTEEEEE
T ss_pred -EEEEEeCCCc-eeEEec--CC-CEEEEECCCCEEEEEcCCCCe----EEEEEEeCCCCcccccccccEEe--CCEEEEE
Confidence 5556653222 234443 45 444444558899999999987 5666543 222 45678887 4466666
Q ss_pred EeCCCcEEEEECCCCCChHHH--HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 390 SSADNQLTIWDLSLEKDEEEE--AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
.-.++.|.+.|..+++..... ..+... .+.+ .+....-.+.|+|+|....+++++-.-- ++|.
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~----------~~~~---~~~~~~vlNGIA~dp~~~rlfVTGK~Wp-~~~e 261 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRA----------VAGQ---VTNPEAVLNGIAVEPGSGRIFMTGKLWP-RLFE 261 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHH----------HTTT---CCCTTCCEEEEEECTTTCCEEEEETTCS-EEEE
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCccc----------cccc---ccCcCCceEEEEEcCCCCEEEEeCCCCC-ceEE
Confidence 667889999999887521000 000000 0000 0111124789999999888888776543 4443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.003 Score=60.94 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=87.5
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC--CcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA--ASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~--~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++.+..++.|..+|..++.. |........+.. ..+.++.-.| .+. .+..++.++.|..+|.++++ .+....
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~~~~~g~l~~~d~~tG~-~~w~~~- 266 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFALAYNGNLTALDLRSGQ-IMWKRE- 266 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEEEECTTSCEEEEETTTCC-EEEEEC-
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEEEEecCcEEEEEECCCCc-EEeecc-
Confidence 788888899999999987654 221111000000 0000000111 133 67778889999999999886 333332
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
......+... + ..|..++.++.|..+|..+++ .+..... ....+.+.... + ..|+.++.+|.|.++|.
T Consensus 267 -~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 267 -LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGV----TLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINV 335 (376)
T ss_dssp -CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCC----EEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEET
T ss_pred -CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCc----EEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEEC
Confidence 2334445544 3 567777889999999999887 5555542 22233333333 3 67888889999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
.+++
T Consensus 336 ~tG~ 339 (376)
T 3q7m_A 336 EDGR 339 (376)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8873
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0045 Score=59.66 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=83.9
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
.++.++.++.|..+|..++.. |..... -.....++ .. +. .++.++.++.|..+|.++++ .+..+......
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~p~----~~--~~-~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~ 175 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKVA-GEALSRPV----VS--DG-LVLIHTSNGQLQALNEADGA-VKWTVNLDMPS 175 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECS-SCCCSCCE----EE--TT-EEEEECTTSEEEEEETTTCC-EEEEEECCC--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeCC-CceEcCCE----EE--CC-EEEEEcCCCeEEEEECCCCc-EEEEEeCCCCc
Confidence 888899999999999987654 221111 00111122 11 33 67788889999999999886 33333322111
Q ss_pred E-----EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC----------e-EEEEEeCCCCCEEEEE
Q 039302 327 V-----NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP----------V-TSIEWSPHEGSTLAVS 390 (479)
Q Consensus 327 v-----~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~----------I-~~v~~sp~~~~~las~ 390 (479)
. ...... + ..++.++.++.|..+|.++++ .+..+...... + ...... + ..+..+
T Consensus 176 ~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~ 245 (376)
T 3q7m_A 176 LSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVV--N-GVVFAL 245 (376)
T ss_dssp ---CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCC----EEEEEECCC-----------CCCCCCEEE--T-TEEEEE
T ss_pred eeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCc----EEEEEecccCCCCcccccccccCCCcEEE--C-CEEEEE
Confidence 0 111222 2 467778889999999999887 55554422100 0 111121 3 567778
Q ss_pred eCCCcEEEEECCCCC
Q 039302 391 SADNQLTIWDLSLEK 405 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~ 405 (479)
+.++.|..+|..+++
T Consensus 246 ~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQ 260 (376)
T ss_dssp CTTSCEEEEETTTCC
T ss_pred ecCcEEEEEECCCCc
Confidence 889999999998763
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0046 Score=58.39 Aligned_cols=163 Identities=9% Similarity=-0.051 Sum_probs=105.9
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
..+.+|+|.+....++.+-...+.|..+++....... ..+...-.....+++.+.+.+++++-...+.|.++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~---~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ---NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC---EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE---EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 3677999998765244555567789999986542210 0111122346788998866657777777889999998764
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
. ............+.+++.|.++.++.+-. ..+.|...++.... ........-...+.|+|+|.++.++.+=+.
T Consensus 112 ~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 112 L-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp S-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred c-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----eEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence 3 22222234456789999987646666552 35788888876433 122222223456899999977667777777
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
.+.|..+|+...
T Consensus 187 ~~~I~~~d~dG~ 198 (318)
T 3sov_A 187 LNFIHKSNLDGT 198 (318)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEcCCCC
Confidence 889999998643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.019 Score=61.49 Aligned_cols=247 Identities=11% Similarity=0.117 Sum_probs=146.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|+++...+++.-.++ +.. -|.+|+.....-.. .. ..+.....-....|.++...+++ .|
T Consensus 263 ~~i~~i~~d~~g~lWig--t~~-Gl~~~~~~~~~~~~--~~------------~~~~~~~~l~~~~i~~i~~D~~g--~l 323 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIG--TFN-DLNIYHEGTDSFAS--YS------------SNPVENGSLSQRSVRSIFMDSQG--GM 323 (795)
T ss_dssp SBEEEEEECTTSCEEEE--ESS-CEEEEETTTTEEEE--EC------------CCTTSTTSCSSSCEEEEEECTTS--CE
T ss_pred CeEEEEEEcCCCCEEEE--eCC-hhheEcCCCCeEEE--Ee------------cCCCCCCCCCCCcEEEEEEeCCc--CE
Confidence 56888888888843333 444 48888876521000 00 00000000123478999888776 57
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCc--ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe------
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPF--IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK------ 321 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~------ 321 (479)
..|+.++-|..|+..+........... .-....|.++...+++. |-.|+.++-|..||..+.. ...+.
T Consensus 324 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~ 399 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQR--FTSYTLQEDES 399 (795)
T ss_dssp EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCC--EEEECCC----
T ss_pred EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCc--EEEEecCCCCc
Confidence 778888889999876532211101100 11235699999998887 5557777779999987753 22221
Q ss_pred ---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-----cCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 322 ---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-----YHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 322 ---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-----~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.....|.++...+++ .+|..|+.++.|.+||..+.. +..+. .+...|.++...+++ .+.+. +.
T Consensus 400 ~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~-----~~~~~~~~~~l~~~~v~~i~~d~~g-~lwig-t~- 470 (795)
T 4a2l_A 400 ARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ-----VENFNQRNSQLVNENVYAILPDGEG-NLWLG-TL- 470 (795)
T ss_dssp --CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC-----EEEECTTTSCCSCSCEEEEEECSSS-CEEEE-ES-
T ss_pred ccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc-----EEEeecCCCCcCCCeeEEEEECCCC-CEEEE-ec-
Confidence 123568999988877 646677887889999988765 33332 134578999988754 54444 44
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+-|.+|+....... ..... ..+. ......|.++...+++. +.+++. +||..|++.
T Consensus 471 ~Gl~~~~~~~~~~~------------~~~~~-~~~~-----~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~ 525 (795)
T 4a2l_A 471 SALVRFNPEQRSFT------------TIEKE-KDGT-----PVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQE 525 (795)
T ss_dssp SCEEEEETTTTEEE------------ECCBC-TTCC-----BCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEE
T ss_pred CceeEEeCCCCeEE------------Ecccc-cccc-----ccCCceEEEEEECCCCC-EEEEeC-CceEEEeCC
Confidence 45888987654210 00000 0000 00123588898888885 555555 788888764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00059 Score=72.72 Aligned_cols=198 Identities=10% Similarity=0.030 Sum_probs=111.2
Q ss_pred ceeEEEEe-cCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCc-EEecCCCCceEEEEeCCC
Q 039302 171 CVNRIRAM-SQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-VKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 171 ~V~~v~~~-p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~ 244 (479)
.+...+|+ |+|..++.+.+.+| +|+++|+.... +.+ ..+.. ....++|+|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~--------------------~~l~~~~~~---~~~~~~WspD 231 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS--------------------QTIADKVSG---TNGEIVWGPD 231 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTT--------------------CCCCCCEEE---ECSCCEECSS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCC--------------------EeCCccccC---ceeeEEEecC
Confidence 67889999 99965555555444 49999998720 110 00111 1346889999
Q ss_pred CCCeEEEEeCC-----CeEEEEecCCCCccccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCce
Q 039302 245 APGRLVSGDCN-----SCIHLWEPASDATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCSV--DGNIAIWDTRVGKSA 316 (479)
Q Consensus 245 ~~~~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~--dg~I~iwD~~~~~~~ 316 (479)
+. .|+....+ ..|+++++.++..... ..+. ........+.|+|+++.++++... ...|.++|+.++...
T Consensus 232 g~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~~--lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 HT-SLFYVTKDETLRENKVWRHVMGKLQSEDV--CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp TT-EEEEEEECTTCCEEEEEEEETTSCGGGCE--EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred CC-EEEEEEECCCCCCCEEEEEECCCCchhcE--EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 98 55555544 2688888866432110 1111 222346688999999944444432 346888898875212
Q ss_pred e--eEE-ecCCCCEEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCCCCCceEEE-eecCCC--CeEEEEEeCCCCCE
Q 039302 317 L--MSF-KAHNADVNVISWNRLASCLLASGSDD----GTFSIHDLRLLKGGDSVVAH-FEYHKH--PVTSIEWSPHEGST 386 (479)
Q Consensus 317 ~--~~~-~~h~~~v~~l~~~p~~~~~l~sgs~d----g~i~iwDlr~~~~~~~~~~~-~~~h~~--~I~~v~~sp~~~~~ 386 (479)
. ..+ ........++.|+..+ .+++....+ ..|..+|+.+.. .... +-.|.. .+..+.+. ++.+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~----~~~~~li~~~~~~~l~~~~~~--~~~l 381 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPS----DWSHVLVDHSEDVFMESIAVR--SNYL 381 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTT----CCCCEEECCCSSEEEEEEEEC--SSEE
T ss_pred ceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcc----cceeeEECCCCCcEEEEEEEE--CCEE
Confidence 2 223 2334455666666544 555555544 367777776432 1112 222333 34555554 4467
Q ss_pred EEEEeCCCcEE--EEEC
Q 039302 387 LAVSSADNQLT--IWDL 401 (479)
Q Consensus 387 las~s~Dg~I~--iwdl 401 (479)
+++...++... ++++
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 77777788644 5554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.95 E-value=0.013 Score=55.24 Aligned_cols=205 Identities=6% Similarity=-0.110 Sum_probs=129.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..+..+.|.+.+..++.+-...+.|+.+++... ......+...-....++++.+.+..++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~--------------------~~~~~~~~~~l~~p~glavd~~~g~ly 94 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGEKLY 94 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS--------------------SCCCEEEEECCSCCCEEEEETTTTEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCC--------------------CceEEEEcCCCCCccEEEEEcCCCeEE
Confidence 457789999976678888777889999998762 111111222223445677766554255
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
++-...+.|.++++.......+ ..........|++.|.+..++.+-. ..+.|...++.... ........-..-+
T Consensus 95 ~~d~~~~~I~~~~~dG~~~~~l----~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pn 169 (318)
T 3sov_A 95 WTDSETNRIEVSNLDGSLRKVL----FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPN 169 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEE----ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEE
T ss_pred EEECCCCEEEEEECCCCcEEEE----EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCcc
Confidence 5555678999999865322111 1123346789999997764555542 35788888886543 1112222234568
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|+|++++..++++-+..+.|..+|+.... ..............+++.. +.++.+-...+.|..++...+.
T Consensus 170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTN----RQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEeccCCEEEEEECCCCEEEEEcCCCCc----eEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence 999999776777777788899999987433 1222232344556777763 3677777778899999986553
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0023 Score=60.00 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=113.5
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTR 311 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~ 311 (479)
....+++|++++. ++++-..++.|..|+.... ... +......+..+++.+++. ++++..... .|..+|..
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----HATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----EEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----EEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCC
Confidence 4677999999876 6666667899999997642 211 111234688999999998 666554332 46667776
Q ss_pred CCCceeeEEe--cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---------cCCCCeEEEEEe
Q 039302 312 VGKSALMSFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---------YHKHPVTSIEWS 380 (479)
Q Consensus 312 ~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---------~h~~~I~~v~~s 380 (479)
+++ +..+. ......+.++..+.+ .++++-..++.|.++|...... .+.... ..-...+.| +
T Consensus 104 ~g~--~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~---~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 104 DGT--VETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp TSC--EEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred CCe--EEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcE---eEEEECCccccccccCCCCcCCCc--C
Confidence 664 22221 122334556655544 5666665689999999865320 111110 111234555 7
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-C
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-A 459 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~ 459 (479)
|+++.++++-+..++|.+|++..... -...+. +... .....+++.+++. +.++.. .
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~-------------------~~~~~~-~~~~--~~P~gi~vd~dG~-l~va~~~~ 232 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDK-------------------PGEPEI-FVEQ--TNIDDFAFDVEGN-LYGATHIY 232 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSC-------------------BCCCEE-EEES--CCCSSEEEBTTCC-EEEECBTT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCC-------------------CCccEE-Eecc--CCCCCeEECCCCC-EEEEeCCC
Confidence 76655667777788999999875210 001122 2111 3467788888875 444443 3
Q ss_pred CCceEEee
Q 039302 460 DGFNILMP 467 (479)
Q Consensus 460 dgi~iw~~ 467 (479)
+.|.+|++
T Consensus 233 ~~V~~~~~ 240 (306)
T 2p4o_A 233 NSVVRIAP 240 (306)
T ss_dssp CCEEEECT
T ss_pred CeEEEECC
Confidence 44666654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0072 Score=64.25 Aligned_cols=168 Identities=12% Similarity=0.019 Sum_probs=107.8
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
....+.+|+|.+....++++-...+.|+.+++............+.........|++.+.+.+++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567899999866524455555678998988652110000011111234567899998887688888888999999998
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
... ....+.........|+++|..+.++++-... +.|.+.++.... ....+...-...+.|++++..+.++++=
T Consensus 502 G~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 502 GVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp SSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc----eEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 653 2222333445688999999864666665433 788888886543 2333333345788999998776666666
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
...+.|...++...
T Consensus 577 ~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 577 SKLHSISSIDVNGG 590 (791)
T ss_dssp TTTTEEEEEETTSC
T ss_pred CCCCcEEEEecCCC
Confidence 66778999998654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00033 Score=70.93 Aligned_cols=121 Identities=10% Similarity=0.090 Sum_probs=82.6
Q ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc----------eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEE
Q 039302 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----------ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 351 (479)
Q Consensus 282 ~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~i 351 (479)
...++.++|+|+.+++++..+.+|.++|+.+.+. .+.....-......++|+|+| ...++.--|++|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence 4567899999997777777899999999996420 111122234567889999999 88888999999999
Q ss_pred EeCCCC------CCCCceEEEeecCCCCe-----EEEEEeCCCCCEEEEEeC-C-CcE-----------EEEECCCC
Q 039302 352 HDLRLL------KGGDSVVAHFEYHKHPV-----TSIEWSPHEGSTLAVSSA-D-NQL-----------TIWDLSLE 404 (479)
Q Consensus 352 wDlr~~------~~~~~~~~~~~~h~~~I-----~~v~~sp~~~~~las~s~-D-g~I-----------~iwdl~~~ 404 (479)
||+... ......+.++..|-.+- ..+..+|++ .+|+++.. . .++ .++|++..
T Consensus 357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 998761 11123777777776542 122457855 77777654 2 333 67888543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.88 E-value=0.023 Score=55.43 Aligned_cols=215 Identities=8% Similarity=-0.089 Sum_probs=132.9
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+......+..|+|.+.+..++.+-...+.|+.+++..... .......+........+|++.+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-----------------~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CCCEEEECSSCSCEEEEEEETT
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-----------------CCcceEEEeCCCCCcccEEEEec
Confidence 3455678899999997767887767788899988865110 01122222223345667777765
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCceeeEEecC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+..++++-...+.|.+.++.......+ +.........|+++|.+..++.+-.. .+.|...++.... ........
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l----~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~ 244 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTL----FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN 244 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEE----EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSS
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEE----EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECC
Confidence 543555555678999998865332111 12223457899999977745555433 4789888887643 22222333
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
-...+.|++++.+..++++-+..+.|..+|+..... ..+......-.....|++. ++.++.+-...+.|..+|...
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC--EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc--EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCC
Confidence 356799999988767777777788999999865431 1122211222345577774 447777777788999998655
Q ss_pred CC
Q 039302 404 EK 405 (479)
Q Consensus 404 ~~ 405 (479)
+.
T Consensus 321 G~ 322 (400)
T 3p5b_L 321 GS 322 (400)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0062 Score=60.11 Aligned_cols=158 Identities=7% Similarity=0.028 Sum_probs=95.2
Q ss_pred ceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 171 CVNRIRAMS-QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
....|+++| ++..+.++-.. +.|+.+|+.. ..+..+.........|+|++++. +|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~----------------------~~v~~~~~~~~~P~~ia~d~~G~-~l 193 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEK----------------------EYVSTVYSGLSKVRTICWTHEAD-SM 193 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTT----------------------TEEEEEECCCSCEEEEEECTTSS-EE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCC----------------------CEEEEEecCCCCcceEEEeCCCC-EE
Confidence 356788887 34355555333 7888888765 12233333445688999999987 66
Q ss_pred EEEeCC-C----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 250 VSGDCN-S----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 250 ~sg~~d-g----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
+.+... + .+...+. .+..... ..+. .......++++|++..++++-..++.|..++...............
T Consensus 194 yvad~~~~~~~~~v~~~~~-~g~~~~~--~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 194 IITNDQNNNDRPNNYILTR-ESGFKVI--TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp EEEECCSCTTSEEEEEEEG-GGTSCSE--EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEeCCCCcccceEEEEeC-CCceeee--eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 666542 2 2333443 2211100 0111 1234567889994443777777788999999986532111111122
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
...+.|+|+|++..++++-...+.|..++...
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 34688999999944777777888999988653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0018 Score=61.17 Aligned_cols=160 Identities=8% Similarity=0.049 Sum_probs=98.2
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC-CCCc--------------ccCCCcEEEEEECC-CCCcEEE
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-PNPF--------------IGHAASVEDLQWSP-TESDVFA 297 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-~~~~--------------~~h~~~V~~l~~sp-~~~~~l~ 297 (479)
....+++|.+++. ++.++..++.|..|+..+....... ...+ ......+..|++.+ ++. |.
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LY 95 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EE
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc--EE
Confidence 3456789999876 7888988999999998653221100 0000 01123578999998 554 44
Q ss_pred EEeCCCcEEEEEcCCCCceeeEEec-----CCCCEEEEEEcC-CCCcEEEEEeC-----------------CCeEEEEeC
Q 039302 298 SCSVDGNIAIWDTRVGKSALMSFKA-----HNADVNVISWNR-LASCLLASGSD-----------------DGTFSIHDL 354 (479)
Q Consensus 298 s~s~dg~I~iwD~~~~~~~~~~~~~-----h~~~v~~l~~~p-~~~~~l~sgs~-----------------dg~i~iwDl 354 (479)
.+...+.|..+|..++. +..+.. .....+.+++.+ ++ .++++-.. +|.|..||.
T Consensus 96 v~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 44444558888876542 222211 123478899999 88 66665432 367888887
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+.. . ..+...-.....|+|+|++..++++-+..+.|.+|++...
T Consensus 173 ~~~~----~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 173 STKE----T-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp TTTE----E-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred CCCE----E-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 6554 2 2221112234679999966335555566789999998753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0016 Score=69.28 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=109.2
Q ss_pred ceEEEEeC-CCCCCeEEEEe-CCC----eEEEEecCCC-CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----
Q 039302 235 EGYAIDWN-PVAPGRLVSGD-CNS----CIHLWEPASD-ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----- 302 (479)
Q Consensus 235 ~v~~l~~s-~~~~~~l~sg~-~dg----~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----- 302 (479)
.+...+|| |++. +||-+. .+| .|+++|+.++ ... ...+. .....+.|+|+++ .|+....+
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l---~~~~~---~~~~~~~WspDg~-~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTI---ADKVS---GTNGEIVWGPDHT-SLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCC---CCCEE---EECSCCEECSSTT-EEEEEEECTTCCE
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeC---Ccccc---CceeeEEEecCCC-EEEEEEECCCCCC
Confidence 67789999 9998 666443 333 5999999876 421 11121 1134678999998 44444444
Q ss_pred CcEEEEEcCCCCce-eeEEe-cCCCCEEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCCCCCce-EEEe-ecCCCCeEE
Q 039302 303 GNIAIWDTRVGKSA-LMSFK-AHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLKGGDSV-VAHF-EYHKHPVTS 376 (479)
Q Consensus 303 g~I~iwD~~~~~~~-~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~--dg~i~iwDlr~~~~~~~~-~~~~-~~h~~~I~~ 376 (479)
..|.++++.++... ...+. ........+.|+|++..++++... ...|.++|+..... .. +..+ ........+
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--HNTLEIVRPREKGVRYD 324 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--CCCEEESSCCCTTCCEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--CceeEEeecCCCCceEE
Confidence 25888888776321 22232 233446788999999444444432 34688889877531 12 1333 334556677
Q ss_pred EEEeCCCCCEEEEEeCC--C--cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce-EEeecCCCCeeeEEEeCCCC
Q 039302 377 IEWSPHEGSTLAVSSAD--N--QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL-LFIHQGQKDLKELHWHTQVP 451 (479)
Q Consensus 377 v~~sp~~~~~las~s~D--g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~h~g~~~V~~v~w~p~~~ 451 (479)
+.|+. ++.+++.+..+ + .|..+++..... .+. +..+.....+..+.|. +.
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~----------------------~~~~li~~~~~~~l~~~~~~--~~ 379 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD----------------------WSHVLVDHSEDVFMESIAVR--SN 379 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC----------------------CCCEEECCCSSEEEEEEEEC--SS
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc----------------------ceeeEECCCCCcEEEEEEEE--CC
Confidence 77765 43555555444 3 566666543110 122 3334322245556665 45
Q ss_pred cEEEEEcCCC
Q 039302 452 GMIVSTAADG 461 (479)
Q Consensus 452 ~ll~s~~~dg 461 (479)
.++++...++
T Consensus 380 ~lv~~~~~~g 389 (751)
T 2xe4_A 380 YLVVAGRRAG 389 (751)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEeCC
Confidence 6888888777
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.018 Score=61.26 Aligned_cols=212 Identities=8% Similarity=-0.094 Sum_probs=128.8
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
......+..|+|.+....++.+-...+.|+.+++..... .......+........+|++.+.+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~-----------------~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC-----------------CcceeEEEecCCCCcceeeeeecC
Confidence 344566778889886657777777778888888765110 011222232223345567776666
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..++++-...+.|.+.++.......+ +.........|+++|.+..++.+-... +.|...++.... ....+...-
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l----~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l 557 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTL----FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENI 557 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEE----EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSC
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEE----EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCC
Confidence 53555656678999999865332111 112234588999999876466554333 778888887653 222223333
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...+.|++++.++.++++-...+.|..+++.... ....+.. .-....+|++.. +.++++-...+.|...+..
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~----~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc----eEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCC
Confidence 5689999998775777776777899999986544 2222222 122345676653 3666776677888888866
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
.+.
T Consensus 632 tG~ 634 (791)
T 3m0c_C 632 TGS 634 (791)
T ss_dssp TCC
T ss_pred CCc
Confidence 553
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0023 Score=67.08 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=48.4
Q ss_pred EEEECCCCCcEEEEEeCCC-------------------cEEEEEcCCCCceeeEEec--CC-------CCEEEEEEcCCC
Q 039302 285 DLQWSPTESDVFASCSVDG-------------------NIAIWDTRVGKSALMSFKA--HN-------ADVNVISWNRLA 336 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~dg-------------------~I~iwD~~~~~~~~~~~~~--h~-------~~v~~l~~~p~~ 336 (479)
.+++.|... +++.++.++ .|..+|.++++ .+-.+.. |. .+.....+..++
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~-~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK-LAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc-eeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 467888777 777777665 39999999986 4444432 22 222222333344
Q ss_pred C--cEEEEEeCCCeEEEEeCCCCC
Q 039302 337 S--CLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 337 ~--~~l~sgs~dg~i~iwDlr~~~ 358 (479)
. ..|+.++.+|.++++|.++++
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCC
T ss_pred cEEEEEEEECCCCEEEEEECCCCC
Confidence 1 268899999999999999987
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.02 Score=56.46 Aligned_cols=202 Identities=10% Similarity=0.001 Sum_probs=114.6
Q ss_pred ceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 171 CVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 171 ~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
....|++.|+ +..|+++-.. +.|+.++... ..+.++........+|+|++++. +
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~----------------------g~v~~~~~~~~~P~giavd~dG~-l 195 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVN----------------------QYVDIKTTNIGQCADVNFTLNGD-M 195 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTT----------------------TEEEEECCCCSCEEEEEECTTCC-E
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCC----------------------CEEEEeecCCCCccEEEECCCCC-E
Confidence 4567888884 3355555333 7888888754 12233333445688999999997 5
Q ss_pred EEEEeCC---C-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe-cC
Q 039302 249 LVSGDCN---S-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK-AH 323 (479)
Q Consensus 249 l~sg~~d---g-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~-~h 323 (479)
+++.... . .+...+........ ..+ ........++++|.+.+++++-..++.|+.+|..++......+. ..
T Consensus 196 yVad~~~~~~~~gv~~~~~~~~~~~~---~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRASGFTER---LSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGGTTCCE---EEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred EEEcCCCCcccceEEEEECCCCeecc---ccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 5554421 1 23333332111100 001 11234567889994443777766788899999886642111111 11
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC---------------CCCeEEEEE---------
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH---------------KHPVTSIEW--------- 379 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h---------------~~~I~~v~~--------- 379 (479)
...-..|+|+|++..++++-...+.|+.+++............+.+. -.....+++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 22235799999994477777778899998865321100011222221 123567888
Q ss_pred eCCCCCEEEEEeCCCcEEEEEC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl 401 (479)
.+ ++.++++-...++|+.++.
T Consensus 352 d~-~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 352 ED-EYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp SC-CEEEEEEETTTTEEEEECT
T ss_pred CC-CCcEEEEECCCCEEEEECC
Confidence 44 4467777677788998874
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.039 Score=58.82 Aligned_cols=248 Identities=12% Similarity=0.058 Sum_probs=141.7
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|+++...+++ .+ ..|+..+-|.+++.....-....... . ... .............|.+|....++ .|
T Consensus 258 ~~i~~i~~d~~g-~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~---f--~~~--~~~~~~~~l~~~~v~~i~~D~~g--~l 326 (781)
T 3v9f_A 258 SYIFSIKQLKDN-KL-WIATELNGIMILDLQQNQFLLPEQIR---F--EFI--REGDNNYSLSNASARYIFQDSFN--NI 326 (781)
T ss_dssp CCEEEEEECTTS-EE-EEEESSSCEEEEETTCC------------C--EEE--CBCSSTTSBSSSCEEEEEECSSC--CE
T ss_pred ceEEEEEECCCC-CE-EEEeCCCCeEEECCCCCeeeeeeccc---c--ccc--cCCCCCCCCCCCeEEEEEEeCCC--CE
Confidence 568888887777 33 34456456888887652100000000 0 000 00000001123478888887766 57
Q ss_pred EEEeCCCeEEEEecCCCCccccCCC-----CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPN-----PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---- 320 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~-----~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---- 320 (479)
-.|+.++-|..++............ ...-....|.++...+++. |-.|+.++-|.+||..+.. ...+
T Consensus 327 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~ 402 (781)
T 3v9f_A 327 WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRV--AIYNKENR 402 (781)
T ss_dssp EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEE--EECC----
T ss_pred EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCe--EEEccCCC
Confidence 7788788889998865432111100 0111235699999988876 5556666678889976542 1111
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
......|.++...+++ .+ ..|+.++.|..+|.++.. +..+. .....|.++...+++ . |..|+. +-|.
T Consensus 403 ~~~~~~v~~i~~d~~g-~l-Wigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~ 472 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEG-NL-WFGTYLGNISYYNTRLKK-----FQIIELEKNELLDVRVFYEDKNK-K-IWIGTH-AGVF 472 (781)
T ss_dssp -CCCSBEEEEEECTTS-CE-EEEETTEEEEEECSSSCE-----EEECCSTTTCCCCEEEEEECTTS-E-EEEEET-TEEE
T ss_pred CCCCcceEEEEECCCC-CE-EEEeccCCEEEEcCCCCc-----EEEeccCCCCCCeEEEEEECCCC-C-EEEEEC-CceE
Confidence 1234568899888777 44 447777788999887654 33332 134678999888744 4 444555 5588
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-----CCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-----QKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-----~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
+||....... .+.... ...|.++...+++. +.+++..+||..|++
T Consensus 473 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 473 VIDLASKKVI------------------------HHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTP 522 (781)
T ss_dssp EEESSSSSCC------------------------EEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECT
T ss_pred EEeCCCCeEE------------------------ecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeC
Confidence 8988765310 011100 24588888888875 666666567777654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0027 Score=66.43 Aligned_cols=200 Identities=11% Similarity=0.032 Sum_probs=111.1
Q ss_pred eEEEEec-CCCcEEEEEeCCc-----------eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEE
Q 039302 173 NRIRAMS-QNPHICASWADTG-----------HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAI 239 (479)
Q Consensus 173 ~~v~~~p-~~~~~lat~s~dg-----------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l 239 (479)
..+++.+ ++ .+++.|+.+. .+.+||.... ....+..+.. +.....++
T Consensus 189 ~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-------------------~w~~~~~~~~~~~~~~~~~ 248 (656)
T 1k3i_A 189 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-------------------IVSDRTVTVTKHDMFCPGI 248 (656)
T ss_dssp SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC-------------------CBCCCEEEECSCCCSSCEE
T ss_pred eeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCC-------------------cEEeCcccCCCCCCccccc
Confidence 3567777 55 7888876543 5788888762 1233333322 33344567
Q ss_pred EeCCCCCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CC-----CcEEEEEcCC
Q 039302 240 DWNPVAPGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VD-----GNIAIWDTRV 312 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~d-----g~I~iwD~~~ 312 (479)
++..++. +++.|+. +..+.+||+.+. .|.... .+..... -.+++..++++ +++.|+ .+ ..+.+||..+
T Consensus 249 ~~~~~g~-lyv~GG~~~~~v~~yd~~t~-~W~~~~-~~~~~R~-~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 249 SMDGNGQ-IVVTGGNDAKKTSLYDSSSD-SWIPGP-DMQVARG-YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EECTTSC-EEEECSSSTTCEEEEEGGGT-EEEECC-CCSSCCS-SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred cCCCCCC-EEEeCCCCCCceEEecCcCC-ceeECC-CCCcccc-ccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence 7788887 8888874 558999999763 444321 1211111 12445567787 888888 34 5699999987
Q ss_pred CCceeeEEe-----cCCCCEEEEEEcCCCCcEEEEEeCCC---------eEEEEeCCCCCCCCceEEEeecCC-------
Q 039302 313 GKSALMSFK-----AHNADVNVISWNRLASCLLASGSDDG---------TFSIHDLRLLKGGDSVVAHFEYHK------- 371 (479)
Q Consensus 313 ~~~~~~~~~-----~h~~~v~~l~~~p~~~~~l~sgs~dg---------~i~iwDlr~~~~~~~~~~~~~~h~------- 371 (479)
.. -..+. .....-....+..++ .+++.|+.+| .+..||..... .......+.
T Consensus 324 ~~--W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~----w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 324 KT--WTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSG----DVKSAGKRQSNRGVAP 396 (656)
T ss_dssp TE--EEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTC----EEEEEEECEETTEECC
T ss_pred Cc--ceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcc----eeecCCccccccccCC
Confidence 53 11110 000000001122333 4555565443 56788887655 222222111
Q ss_pred --CCeEEEEEeCCCCCEEEEEeCCC-----------cEEEEECCCC
Q 039302 372 --HPVTSIEWSPHEGSTLAVSSADN-----------QLTIWDLSLE 404 (479)
Q Consensus 372 --~~I~~v~~sp~~~~~las~s~Dg-----------~I~iwdl~~~ 404 (479)
..-.++.|...++.+++.|+.++ .|.+||....
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~ 442 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS 442 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC
Confidence 12355666555668888888543 5667776554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00047 Score=72.68 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=99.9
Q ss_pred CceEEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
..+.+|+|.+... .|+.+. ..+.|+.+++............+.........|++.+.+.+++++-...+.|.++++..
T Consensus 406 ~~p~gla~d~~~~-~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTT-EEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccC-eEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 3566889988765 555554 46789999886511000000111111223567888876665777766788999999876
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.. ....+.......+.|+++|.++.++++-... +.|.++++.... ....+...-...+.|+|+|.++.++++-+
T Consensus 485 ~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~----~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 485 VK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC----CCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred Cc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC----eeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 53 2222222234567889998765666654333 678887775432 11112222334578999998777888877
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
..+.|.++++...
T Consensus 560 ~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 560 KLHSISSIDVNGG 572 (699)
T ss_dssp TTTEEEEECSSSS
T ss_pred CCCeEEEEccCCC
Confidence 8889999998643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.057 Score=57.58 Aligned_cols=232 Identities=14% Similarity=0.076 Sum_probs=137.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec----------CCCCceEEE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG----------GHKDEGYAI 239 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l 239 (479)
..|.++...+++. |-.|+.++-|..|+..... ...+. .....|.++
T Consensus 313 ~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 313 ASARYIFQDSFNN--IWIGTWGGGINFISNAPPT----------------------FHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp SCEEEEEECSSCC--EEEEEBSSCEEEECSSCCS----------------------CEEEC----CCCSSCCSSSCEEEE
T ss_pred CeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCc----------------------ceeeccCccccccCCCCCcceEEE
Confidence 5688888888773 3345666668888876421 11110 123468888
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
...+++ .|..|+.++-|.+|+..+...... ..........|.++...+++. |-.|+.++-|..+|.++++ ...
T Consensus 369 ~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~ 441 (781)
T 3v9f_A 369 CDDGQG--KLWIGTDGGGINVFENGKRVAIYN-KENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK--FQI 441 (781)
T ss_dssp EECTTS--CEEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE--EEE
T ss_pred EEcCCC--CEEEEeCCCcEEEEECCCCeEEEc-cCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc--EEE
Confidence 887765 577777677788998765321110 000112346799999988876 4446666678889887653 222
Q ss_pred Ee---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-----CCCeEEEEEeCCCCCEEEEEe
Q 039302 320 FK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-----KHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 320 ~~---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-----~~~I~~v~~sp~~~~~las~s 391 (479)
+. .....|.++...+++ . |..|+. +.|.+||..+.. ........ ...|.++...+++ .+ ..|+
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~g-~l-Wigt 512 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKK----VIHHYDTSNSQLLENFVRSIAQDSEG-RF-WIGT 512 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSS----CCEEECTTTSSCSCSCEEEEEECTTC-CE-EEEE
T ss_pred eccCCCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCe----EEecccCcccccccceeEEEEEcCCC-CE-EEEE
Confidence 22 134678999988877 4 444555 568899987655 22211111 3578999888754 44 4445
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-c--CCCCeeeEEEeCCCCcEEEEEcCCCc-eEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-Q--GQKDLKELHWHTQVPGMIVSTAADGF-NILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~--g~~~V~~v~w~p~~~~ll~s~~~dgi-~iw~~ 467 (479)
.++-|..||...... ..+.. . ....|.++...+++. +.+++. +|+ ..|++
T Consensus 513 ~~~Gl~~~~~~~~~~------------------------~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLV------------------------RKFNQYEGFCSNTINQIYRSSKGQ-MWLATG-EGLVCFPSA 566 (781)
T ss_dssp SSSCEEEECTTCCEE------------------------EEECTTTTCSCSCEEEEEECTTSC-EEEEET-TEEEEESCT
T ss_pred cCCCEEEEeCCCCeE------------------------EEccCCCCCCCCeeEEEEECCCCC-EEEEEC-CCceEEECC
Confidence 444477788765420 00100 0 113588888888875 555555 666 66654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.075 Score=52.95 Aligned_cols=207 Identities=11% Similarity=0.026 Sum_probs=118.4
Q ss_pred ceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CCCceEEEEe----
Q 039302 171 CVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HKDEGYAIDW---- 241 (479)
Q Consensus 171 ~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~---- 241 (479)
....|+|.|. ..+|+++....+.|++.|+.. ..+.++.. .......|+|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccccCCCcEEEEeecc
Confidence 3568899984 446777766667788888776 12222221 1235789999
Q ss_pred ---CCCCCCeEEEEeCCC-------eEEEEecCCCCcccc-C-CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 242 ---NPVAPGRLVSGDCNS-------CIHLWEPASDATWNV-D-PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 242 ---s~~~~~~l~sg~~dg-------~I~lwd~~~~~~~~~-~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
++++. .|+.++..+ .|.+.+....+.+.. . ...+.. -.....++++|++..++++...++.|..+|
T Consensus 198 ~~~d~~G~-~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 198 EGYADEAE-YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp TTTBCTTC-EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred cccCCCCC-EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 99987 666665544 266665433122210 0 001111 123457788997666888888899999999
Q ss_pred cC-------CCCc-----e-----eeE-E-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC
Q 039302 310 TR-------VGKS-----A-----LMS-F-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 310 ~~-------~~~~-----~-----~~~-~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+. ++.. + ... + .........|+|+|++..++++-+..+.|+.++.............+.+.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 87 4431 0 111 1 12234467999999994366666778899996653221000001222221
Q ss_pred ---C------------CCeE-EEEEeC------CCCCEEEEEeCCCcEEEEEC
Q 039302 371 ---K------------HPVT-SIEWSP------HEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 371 ---~------------~~I~-~v~~sp------~~~~~las~s~Dg~I~iwdl 401 (479)
. .... .+.... ..+.++++=...++|+.++.
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 0 1233 444441 24467777777889999884
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.005 Score=64.54 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=93.8
Q ss_pred EEEeCCCCCCeEEEEeCCC-------------------eEEEEecCCCCc-cccCCCCcccCC-------CcEEEEEECC
Q 039302 238 AIDWNPVAPGRLVSGDCNS-------------------CIHLWEPASDAT-WNVDPNPFIGHA-------ASVEDLQWSP 290 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg-------------------~I~lwd~~~~~~-~~~~~~~~~~h~-------~~V~~l~~sp 290 (479)
.+++.+... +++.+..++ .|..+|..+++. |... ...|. .++....+..
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~---~~~~~~wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ---VTPGDSWDFTATQQITLAELNI 309 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE---SSTTCCSCCCCCSCEEEEEEEE
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee---cCCCccccccCCCCcEEEEecc
Confidence 467777765 888887666 389999988754 2211 11111 2222222222
Q ss_pred CCC--cEEEEEeCCCcEEEEEcCCCCceeeEEecCC------------CCE------------------------EEEEE
Q 039302 291 TES--DVFASCSVDGNIAIWDTRVGKSALMSFKAHN------------ADV------------------------NVISW 332 (479)
Q Consensus 291 ~~~--~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~------------~~v------------------------~~l~~ 332 (479)
+++ ..++.++.+|.+.++|.++++ .+....... .++ ..+++
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~ 388 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNGK-LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF 388 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE
T ss_pred CCcEEEEEEEECCCCEEEEEECCCCC-EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceE
Confidence 342 268889999999999999986 332211100 000 12567
Q ss_pred cCCCCcEEEE-----------------------------------EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 333 NRLASCLLAS-----------------------------------GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 333 ~p~~~~~l~s-----------------------------------gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
+|+.+.+++. ...+|.|..||+++++ .+-.+..+ .++...
T Consensus 389 dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~----~~W~~~~~-~~~~~~ 463 (668)
T 1kv9_A 389 NPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK----AAWKVPYP-THWNGG 463 (668)
T ss_dssp ETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE----EEEEEEES-SSCCCC
T ss_pred CCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc----EEEEccCC-CCCcCc
Confidence 7766333321 1134889999999987 55555543 233333
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+...+ .+++.++.|+.|++||..+++
T Consensus 464 ~~~t~g-g~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 464 TLSTAG-NLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred eeEeCC-CEEEEECCcccchhhhhhcCh
Confidence 344434 788888999999999998874
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.073 Score=50.16 Aligned_cols=153 Identities=9% Similarity=0.110 Sum_probs=88.5
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEE-EecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHL-WEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~l-wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
.+...++++++.+.+. +++.+. .|.|.. +|- .+..|... .......+..+.+.+++. ++ .++.+|.+++.+
T Consensus 160 ~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~-gG~tW~~~---~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEP-GQTAWEPH---NRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD 231 (327)
T ss_dssp SCCCCEEEEEECTTSC-EEEEET-TSSEEEEECT-TCSSCEEE---ECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred CCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCC-CCCceeEC---CCCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence 3445788999999765 555554 555544 332 12334321 123346788999999886 44 455678887764
Q ss_pred cCCCCceeeEEe----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEEeCC
Q 039302 310 TRVGKSALMSFK----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEWSPH 382 (479)
Q Consensus 310 ~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~sp~ 382 (479)
...+. .-..+. .+...+.++.+.+.+ .++++|. +|.| ++....+. .-..+. .+...+.+|.|.+
T Consensus 232 ~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i-~~S~DgG~----tW~~~~~~~~~~~~~~~v~~~~- 302 (327)
T 2xbg_A 232 PDNSE-NWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG-AGAL-LCSQDGGQ----TWQQDVDVKKVPSNFYKILFFS- 302 (327)
T ss_dssp TTEEE-EECCCBCTTSSCCSCEEEEEESSSS-CEEEEES-TTCE-EEESSTTS----SCEECGGGTTSSSCCCEEEEEE-
T ss_pred CCCCC-eeEeccCCcccCCcceEEEEecCCC-EEEEEeC-CCeE-EEeCCCCc----ccEEcCccCCCCCCeEEEEEEC-
Confidence 32221 111111 123458899999866 6666654 6766 33333333 222232 2345678899975
Q ss_pred CCCEEEEEeCCCcEEEEEC
Q 039302 383 EGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl 401 (479)
+ ..+++++.+|.|.-++-
T Consensus 303 ~-~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 303 P-DQGFILGQKGILLRYVT 320 (327)
T ss_dssp T-TEEEEECSTTEEEEECC
T ss_pred C-CceEEEcCCceEEEEcC
Confidence 3 45777788998877664
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.21 Score=51.65 Aligned_cols=161 Identities=6% Similarity=-0.107 Sum_probs=107.1
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
....+|+|.+.....+++-..++.|..+++.......+ +.........|++.+.+.+++.+-...+.|.+.++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v----~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV----VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE----EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 46789999997763444555678999998865332211 11112356788998877767777777889999998765
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg-s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
. ....+...-.....|++.|..+.++.+- +..+.|...++.... ..... ..-.....|++++.++.++.+-..
T Consensus 113 ~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~----~~~l~-~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 113 H-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE----RTTLV-PNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp T-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEE-CSCSSEEEEEEETTTTEEEEEETT
T ss_pred c-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc----eEEEE-CCCCCcceEEEccccCEEEEEECC
Confidence 3 2222223345578999999664666664 235788888876544 22222 234567899999977566666677
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
.+.|...++...
T Consensus 187 ~~~I~~~d~dG~ 198 (628)
T 4a0p_A 187 TNLIESSNMLGL 198 (628)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEcCCCC
Confidence 889999998654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.082 Score=54.22 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=36.3
Q ss_pred CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 346 dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|.|.-||+.+++ .+-...... ++..-.....+ .+++.++.|+.|+.||.++++
T Consensus 465 ~G~l~A~D~~tG~----~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGK----VVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCC----EEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCC----EEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCC
Confidence 5789999999987 555554322 22221111123 677779999999999999884
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.016 Score=57.22 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=97.1
Q ss_pred ceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC---Cc-EEEEE
Q 039302 235 EGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD---GN-IAIWD 309 (479)
Q Consensus 235 ~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d---g~-I~iwD 309 (479)
...+|+|.|+ ..+.|..+...+.|+.+++.++.... +.........|+|++++. ++++.... .. +...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-----~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-----KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-----ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-----eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 4568999995 33467777666899999986643322 222345689999999998 77766422 11 33333
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ec-CCCCeEEEEEeCCCCCEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EY-HKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~-h~~~I~~v~~sp~~~~~l 387 (479)
..........+. .....+.++++|..+.++++-..++.|+.+|..++. ....+ .. ....-..|+|+|++..++
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~----~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT----LTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC----EEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe----EEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 222111011121 234456788999443777777778899999987554 31222 11 122335799999764366
Q ss_pred EEEeCCCcEEEEECCC
Q 039302 388 AVSSADNQLTIWDLSL 403 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~ 403 (479)
++-...++|..+++..
T Consensus 289 vad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EEETTTTEEEEEEBCT
T ss_pred EEeCCCCEEEEEeCCC
Confidence 6666788999988763
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.043 Score=52.42 Aligned_cols=243 Identities=10% Similarity=0.103 Sum_probs=124.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC---CC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV---AP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~ 246 (479)
.....++|.|++ .++++ ...|.|++++ ....... ...+ .+.........|+|+|+ +.
T Consensus 31 ~~P~~ia~~pdG-~l~V~-e~~g~I~~i~-~g~~~~~---------------~~~~--v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 31 EVPWALAFLPDG-GMLIA-ERPGRIRLFR-EGRLSTY---------------AELS--VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp SCEEEEEECTTS-CEEEE-ETTTEEEEEE-TTEEEEE---------------EECC--CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCceEEEEcCCC-eEEEE-eCCCeEEEEE-CCCccEe---------------ecce--EeecCCCCceeEEECCCCCCCC
Confidence 346789999999 56665 5669999998 3210000 0000 11122346789999998 43
Q ss_pred CeEEEEeC-C-----CeEEEEecCCCCc--cccCCC-----CcccCCCcEEEEEECCCCCcEEEEEeC------------
Q 039302 247 GRLVSGDC-N-----SCIHLWEPASDAT--WNVDPN-----PFIGHAASVEDLQWSPTESDVFASCSV------------ 301 (479)
Q Consensus 247 ~~l~sg~~-d-----g~I~lwd~~~~~~--~~~~~~-----~~~~h~~~V~~l~~sp~~~~~l~s~s~------------ 301 (479)
.|..+.. . +.|..++...... ...... .-..|. ...|+|.|++. ++++.+.
T Consensus 91 -~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~ 166 (352)
T 2ism_A 91 -YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGM-LYVTTGEVYERELAQDLAS 166 (352)
T ss_dssp -EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred -EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence 4444433 2 5788887754211 000000 111233 35899999997 6666432
Q ss_pred -CCcEEEEEcCCC------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe--------EEEEeCCCCCC-
Q 039302 302 -DGNIAIWDTRVG------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGT--------FSIHDLRLLKG- 359 (479)
Q Consensus 302 -dg~I~iwD~~~~------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~--------i~iwDlr~~~~- 359 (479)
.|.|.-++.... ........++ .....++|+|..+.++++-..... |.+.. .+..
T Consensus 167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~ny 243 (352)
T 2ism_A 167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNY 243 (352)
T ss_dssp SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBC
T ss_pred CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcC
Confidence 145555555431 0011111223 235778999943366655433333 44332 2210
Q ss_pred -------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 360 -------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 360 -------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
...++..+..| .....++|. .+.++++.-..+.|...++....... ..
T Consensus 244 Gwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~----------------~~ 304 (352)
T 2ism_A 244 GWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRW----------------RV 304 (352)
T ss_dssp CTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEE----------------EE
T ss_pred CCCcccCCCCCCCCcCCeEecCCC-CCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcce----------------ee
Confidence 01244455333 355778884 34677766667788887775432100 00
Q ss_pred CCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 427 LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
.....++ .....+.++++.|++..++++.+.+
T Consensus 305 ~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~~~~ 336 (352)
T 2ism_A 305 LRVETAL--SGFGRLREVQVGPDGALYVTTSNRD 336 (352)
T ss_dssp EEEEEEE--ESSCCEEEEEECTTSCEEEEECSTT
T ss_pred cchheec--ccCCCeeEEEECCCCcEEEEEeCCC
Confidence 0001111 2234699999999996444443433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.028 Score=57.56 Aligned_cols=55 Identities=15% Similarity=-0.054 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+|.|..||+.+++ .+-.+... .++.+..+...+ .+++.++.|+.|+.||.++++
T Consensus 442 ~~g~l~a~D~~tG~----~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 442 EMGQIRAFDLTTGK----AKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CCEEEEEECTTTCC----EEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCC----EEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCC
Confidence 35789999999887 55555432 233332223224 567778999999999998874
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.092 Score=50.14 Aligned_cols=251 Identities=11% Similarity=0.044 Sum_probs=130.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE---ecCCCCceEEEEeCCC-
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK---FGGHKDEGYAIDWNPV- 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~s~~- 244 (479)
-.....++|.|++ .++++ ...|.|++++.... ..+.. +.........|+++|+
T Consensus 28 l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~~G~---------------------~~~~~~~v~~~g~~g~~gia~~pdf 84 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-RYLVT-ERPGRLVLISPSGK---------------------KLVASFDVANVGEAGLLGLALHPEF 84 (354)
T ss_dssp CSCEEEEEEEETT-EEEEE-ETTTEEEEECSSCE---------------------EEEEECCCCCSTTCSEEEEEECTTT
T ss_pred CCCCeEEEEcCCC-eEEEE-eCCCEEEEEeCCCc---------------------eEeeccceeecCCCceeeEEeCCCC
Confidence 3567899999999 56666 56699999873321 01111 1112346789999997
Q ss_pred --CCCeEEEEeC----C----CeEEEEecCCCC-c---cccCCC---CcccCCCcEEEEEECCCCCcEEEEEeC------
Q 039302 245 --APGRLVSGDC----N----SCIHLWEPASDA-T---WNVDPN---PFIGHAASVEDLQWSPTESDVFASCSV------ 301 (479)
Q Consensus 245 --~~~~l~sg~~----d----g~I~lwd~~~~~-~---~~~~~~---~~~~h~~~V~~l~~sp~~~~~l~s~s~------ 301 (479)
+. .|..+.. + ..|..|+..... . ...... ....|. ...|.|.|++. ++++.+.
T Consensus 85 ~~~g-~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~-Lyvt~G~~~~~~~ 160 (354)
T 3a9g_A 85 PKKS-WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGM-LYITTGDAADPRL 160 (354)
T ss_dssp TTSC-EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSC-EEEECCCTTCGGG
T ss_pred CcCC-EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCc-EEEEECCCCCCcc
Confidence 43 5554433 2 567777765431 0 000000 011232 36799999997 6666442
Q ss_pred -------CCcEEEEEcCCCC-------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCC--------
Q 039302 302 -------DGNIAIWDTRVGK-------SALMSFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRL-------- 356 (479)
Q Consensus 302 -------dg~I~iwD~~~~~-------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~-------- 356 (479)
.|.|.-++....- .......++. ....++|+|..+.++++-...+ .|.+...-.
T Consensus 161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (354)
T 3a9g_A 161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLAT 239 (354)
T ss_dssp GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCC
T ss_pred ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCccc
Confidence 2445555544220 0111123333 3468999994336666543322 244332111
Q ss_pred CCC----CCceEEEeecCCCCeEEEEEeC------CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 357 LKG----GDSVVAHFEYHKHPVTSIEWSP------HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 357 ~~~----~~~~~~~~~~h~~~I~~v~~sp------~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
... ...++..+.........+.|.. ..+.++++.-..+.|...++......
T Consensus 240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~------------------- 300 (354)
T 3a9g_A 240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV------------------- 300 (354)
T ss_dssp SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE-------------------
T ss_pred CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc-------------------
Confidence 000 0124444422234677888842 23467777666778888887643110
Q ss_pred CCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCCc--------eEEeee
Q 039302 427 LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADGF--------NILMPS 468 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dgi--------~iw~~~ 468 (479)
.....+.......+.++++.|++. |.++.. .+|. +||++.
T Consensus 301 -~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~~~~G~g~~~~~~g~i~ri~ 349 (354)
T 3a9g_A 301 -RKISTFFKNVFGRLRDVVIDDDGG-ILISTSNRDGRGSLRAGDDKILKIV 349 (354)
T ss_dssp -EEEEEECTTTSCCEEEEEECTTSC-EEEEECTTSSSSCCCTTCSCEEEEE
T ss_pred -cceeeeccCCCCCeeEEEECCCCc-EEEEEeCCCCCcCCCCCCCEEEEEe
Confidence 000011111124689999999995 555553 2331 677764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0056 Score=60.44 Aligned_cols=158 Identities=11% Similarity=0.097 Sum_probs=97.5
Q ss_pred ceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC----cEEEEE
Q 039302 235 EGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG----NIAIWD 309 (479)
Q Consensus 235 ~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg----~I~iwD 309 (479)
....|+|+|. +. .|..++..+.|+.+|+....... +.........|+|++++..++++...++ .+.+++
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~-----~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVST-----VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEE-----EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEE-----EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 4568899983 43 67666665889999986643211 2223456889999999984555544333 233344
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~la 388 (479)
..........+.. ......++++|+++.++++-...+.|..++..... ....+.. .......|+|+|++..+++
T Consensus 212 ~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~----~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 212 RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE----TTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE----EEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----EEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 3222111122221 23457788999443788887788999999987544 2122221 1234678999997633666
Q ss_pred EEeCCCcEEEEECCC
Q 039302 389 VSSADNQLTIWDLSL 403 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~ 403 (479)
+-...++|..++...
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 666788999988753
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0013 Score=69.21 Aligned_cols=207 Identities=8% Similarity=-0.096 Sum_probs=119.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..+..|+|.+.+..|+++-...+.|+.+++...... ......+........+|++.+.+..++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-----------------~~~~~~i~~~~~~P~glavD~~~g~LY 468 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------SSYDTVISRDIQAPDGLAVDWIHSNIY 468 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------------------CCCCCBCCSCC--CCCEECCCSSSBCE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-----------------cceEEEEeCCCCCcceEEEEeeCCcEE
Confidence 456678888866566666556678888887641000 000011111112344677775554355
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
++-...+.|.++++.......+ +.........|+++|.+..++++-... +.|..+++.... ....+...-...+
T Consensus 469 ~tD~~~~~I~v~d~dg~~~~~l----~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 469 WTDSVLGTVSVADTKGVKRKTL----FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPN 543 (699)
T ss_dssp ECCTTTSCEEEEBSSSCCEEEE----CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCC
T ss_pred EEeccCCeEEEEecCCCceEEE----EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCcc
Confidence 5555678899999865332211 111123457889999776456554333 778888776432 1111122233467
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.|+|+|.+..++++-+..+.|.++|+.... ....+. ........|++.. ..++++....+.|..++...+
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSC----CEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCc----eEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCC
Confidence 899999876888888888899999987533 122221 1122334566654 367777777889999987654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0042 Score=64.99 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=106.6
Q ss_pred cceeEEEEecCCCcEEEEEe-CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWA-DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
....++++..++ .+++.|+ .++.+.+||..... ...+..+.. ...-.++...+++. +
T Consensus 243 ~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~-------------------W~~~~~~~~-~R~~~s~~~~~dg~-i 300 (656)
T 1k3i_A 243 MFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDS-------------------WIPGPDMQV-ARGYQSSATMSDGR-V 300 (656)
T ss_dssp CSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTE-------------------EEECCCCSS-CCSSCEEEECTTSC-E
T ss_pred CccccccCCCCC-CEEEeCCCCCCceEEecCcCCc-------------------eeECCCCCc-cccccceEEecCCe-E
Confidence 334456677777 6777777 45689999987521 111111111 11223455566776 8
Q ss_pred EEEEe-CC-----CeEEEEecCCCCccccCC----CCcccCCCcEEEEEECCCCCcEEEEEeCCC---------cEEEEE
Q 039302 249 LVSGD-CN-----SCIHLWEPASDATWNVDP----NPFIGHAASVEDLQWSPTESDVFASCSVDG---------NIAIWD 309 (479)
Q Consensus 249 l~sg~-~d-----g~I~lwd~~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---------~I~iwD 309 (479)
++.|+ .+ ..+.+||+.+. .|.... .++..... ...+..++. +++.++.+| .+..||
T Consensus 301 yv~GG~~~~~~~~~~~e~yd~~t~-~W~~~~~~~~~p~~~~~~---~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd 375 (656)
T 1k3i_A 301 FTIGGSWSGGVFEKNGEVYSPSSK-TWTSLPNAKVNPMLTADK---QGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYY 375 (656)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTT-EEEEETTSCSGGGCCCCT---TGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEE
T ss_pred EEEeCcccCCcccccceEeCCCCC-cceeCCCccccccccccc---cceeecCCc-eEEEECCCCcEEEecCccceeeee
Confidence 88887 34 47899999763 343211 01110000 011223333 455555443 567888
Q ss_pred cCCCCceeeEEecC---------CCCEEEEEEcCCCCcEEEEEeCCC-----------eEEEEeCCCCCCCCceEEEe--
Q 039302 310 TRVGKSALMSFKAH---------NADVNVISWNRLASCLLASGSDDG-----------TFSIHDLRLLKGGDSVVAHF-- 367 (479)
Q Consensus 310 ~~~~~~~~~~~~~h---------~~~v~~l~~~p~~~~~l~sgs~dg-----------~i~iwDlr~~~~~~~~~~~~-- 367 (479)
..+... ......+ ...-.++.|...+..+++.|+.++ .|.+||..+.. .....
T Consensus 376 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~~ 450 (656)
T 1k3i_A 376 TSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----NTVFASN 450 (656)
T ss_dssp CSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----EEEECTT
T ss_pred cCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----eeEEccC
Confidence 877641 1111111 112345555543448888888543 67788877654 22221
Q ss_pred ecCCCC-eEEEEEeCCCCCEEEEEeCC-----------CcEEEEECCCC
Q 039302 368 EYHKHP-VTSIEWSPHEGSTLAVSSAD-----------NQLTIWDLSLE 404 (479)
Q Consensus 368 ~~h~~~-I~~v~~sp~~~~~las~s~D-----------g~I~iwdl~~~ 404 (479)
..+... -.++...|++ .+++.|+.+ ..+.+||....
T Consensus 451 ~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 451 GLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 112222 2344556744 888988864 46889998654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.29 Score=50.57 Aligned_cols=203 Identities=6% Similarity=-0.106 Sum_probs=129.9
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
-..+..|.|.+.+..++.+-..++.|+.+++... .....+........+|++.+.+..+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---------------------~~~~v~~~g~~~P~GlAvD~~~~~L 94 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---------------------ALEHVVEFGLDYPEGMAVDWLGKNL 94 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSCCCEEEEETTTTEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---------------------CcEEEEeCCCCCcceEEEEeCCCEE
Confidence 3467899999987788888778899999988751 1112222111234456665555424
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE-eCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC-SVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~-s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++-...+.|.+.++.......+ ....-....+|++.|....++.+- +..+.|...++.... ...+...-...
T Consensus 95 Y~tD~~~~~I~v~~~dG~~~~~l----~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P 168 (628)
T 4a0p_A 95 YWADTGTNRIEVSKLDGQHRQVL----VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRA 168 (628)
T ss_dssp EEEETTTTEEEEEETTSTTCEEE----ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSE
T ss_pred EEEECCCCEEEEEecCCCcEEEE----EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCc
Confidence 45555577899999865332111 112234578999999766455554 235678888877553 22222344568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+.|++++.+..++++-...+.|..+|+..... ..+.........|++.. +.++.+-...+.|...|..++.
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-----~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-----EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEccccCEEEEEECCCCEEEEEcCCCCce-----EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCC
Confidence 99999998757777777888999999976442 22333334456788875 3677776678899998876553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.12 Score=53.43 Aligned_cols=163 Identities=9% Similarity=-0.033 Sum_probs=104.5
Q ss_pred CCceEEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
-....+|+|++.+. .|..++ ..+.|..+++....... ..+..-......|++.+.+.+++++-...+.|.+.++.
T Consensus 39 ~~~~~~ld~~~~~~-~ly~sD~~~~~I~r~~~~g~~~~~---~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 39 LEDAAAVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESVQ---NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CSCEEEEEEETTTT-EEEEEETTTTEEEEEEC-----CE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCC-EEEEEECCCCeEEEEEccCCCceE---EEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence 34678999999776 555544 46789888886542111 11111224688999999777677777788999999998
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
... ....+...-.....|++.|.++.++.+-- ..+.|...++.... ........-...+.|++++.++.++.+=
T Consensus 115 G~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~----~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 115 GSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp SCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred CCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc----eEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 653 22222233445678999997646666652 24677777765433 2222222345678999999776677776
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
+..+.|...++...
T Consensus 190 ~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 190 AKLNFIHKSNLDGT 203 (619)
T ss_dssp TTTCCEEEESSSCC
T ss_pred CCCCeEEEecCCCC
Confidence 77888999988654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.066 Score=54.84 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=36.8
Q ss_pred cEEEEEcCCCCceeeEEec--CC--------CCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCCCCCCceEEEee
Q 039302 304 NIAIWDTRVGKSALMSFKA--HN--------ADVNVISWNRLAS--CLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~--h~--------~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~ 368 (479)
.|..+|.++++ .+-.+.. |. .++ .+....++. .+++.++.+|.+.++|..+++ .+..+.
T Consensus 273 ~v~Ald~~tG~-~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~----~~w~~~ 343 (571)
T 2ad6_A 273 TIWGRDLDTGM-AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGN----LIVAEK 343 (571)
T ss_dssp EEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCC----EEEEEE
T ss_pred EEEEEecCCCc-EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCC----EEeeec
Confidence 59999999986 4444432 21 222 122223452 357788999999999999887 555443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.051 Score=50.84 Aligned_cols=166 Identities=13% Similarity=0.135 Sum_probs=106.0
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcc--cC-CCcEEEEEE---CCCCCcEEEEEe
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFI--GH-AASVEDLQW---SPTESDVFASCS 300 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~--~h-~~~V~~l~~---sp~~~~~l~s~s 300 (479)
.+.....---+++|.+... +|..++ ..|+|..|+...+....+...... +. ...+..|.| .|.+. ++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~ 84 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMK 84 (334)
T ss_dssp EECCTTCCCSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEE
T ss_pred EecCcccCCcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEc
Confidence 3444444556889988765 666666 789999999975433322111111 11 124689999 68866 666533
Q ss_pred -------------CCCcEEEEEcC---CCCceeeEEe--c-----------CCCCEEEEEEcCCCCcEEEEEeCC-CeEE
Q 039302 301 -------------VDGNIAIWDTR---VGKSALMSFK--A-----------HNADVNVISWNRLASCLLASGSDD-GTFS 350 (479)
Q Consensus 301 -------------~dg~I~iwD~~---~~~~~~~~~~--~-----------h~~~v~~l~~~p~~~~~l~sgs~d-g~i~ 350 (479)
.+..|..||+. +++ .+.... . -....+.++..++| +..++++.- +.|.
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~ 162 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIA 162 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEE
Confidence 26779999999 654 232221 1 11248999999999 888888887 8777
Q ss_pred EEeCCCCCCCCceEEEee------cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 351 IHDLRLLKGGDSVVAHFE------YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~------~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..+..... +..+. ......+.|+++|++ .+|++....+.|..+|+..
T Consensus 163 rV~pdG~~-----~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 163 RVSADGKT-----VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EECTTSCC-----EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred EEeCCCCE-----EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence 77765332 22221 112236799999966 6666665699999999884
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.2 Score=51.75 Aligned_cols=208 Identities=6% Similarity=-0.107 Sum_probs=124.5
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
..-+.+..|.|.+.+..++.+=...+.|..+++... ......+.........|++.+.+.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~--------------------~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCEEEEEEETTTT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC--------------------CceEEEEeCCCCCcCeEEEEecCC
Confidence 334567889999977677777666788888888751 111222322224567788877665
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.++++-...+.|.+.++.......+ ....-....+|++.|.+..++.+-- ..+.|...++.... ........-.
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l----~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~ 171 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVL----FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIY 171 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEE----ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCS
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEE----EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-eEEEEeCCCC
Confidence 3555555678999999865332111 1122344678999998664555542 24667777776543 2222222345
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..+.|++++.++.++++-...+.|..+|+..... .....+.......|++.. + .++.+-...+.|...|..++.
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~----~~~~~~~~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR----QAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE----C---------CCCEEESS-S-EEEEECTTTCSEEEEESSSCC
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc----EEEEeCCCCCceEEEEeC-C-EEEEecCCCCEEEEEECCCCc
Confidence 6799999998757777777778999999865431 111111112224667764 2 566666668889999987654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.12 Score=48.85 Aligned_cols=202 Identities=12% Similarity=0.173 Sum_probs=116.5
Q ss_pred EEEeCCCCC--CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC----CCc---EEEEEeC--CCcEE
Q 039302 238 AIDWNPVAP--GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT----ESD---VFASCSV--DGNIA 306 (479)
Q Consensus 238 ~l~~s~~~~--~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~---~l~s~s~--dg~I~ 306 (479)
++-.+|..+ .+++.....+-+.+||+ .++... .+. .+.++.+..-|. ++. .+++.-. +++|+
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~----~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~ 102 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLH----SYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE 102 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEE----EEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEE----Ecc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence 344445422 26777777889999999 444322 122 145666666552 221 2344444 68899
Q ss_pred EEEcCCCCceeeEEec------CC-CCEEEEEE--cCCCC-cEEEEEeCCCeEEEEeCCC---CCCCCceEEEeecCCCC
Q 039302 307 IWDTRVGKSALMSFKA------HN-ADVNVISW--NRLAS-CLLASGSDDGTFSIHDLRL---LKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~------h~-~~v~~l~~--~p~~~-~~l~sgs~dg~i~iwDlr~---~~~~~~~~~~~~~h~~~ 373 (479)
+|++......+..+.. .. ..+..+|+ +|... .++++...+|.+..|++.. +......+++|.. ...
T Consensus 103 vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq 181 (355)
T 3amr_A 103 IYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQ 181 (355)
T ss_dssp EEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSC
T ss_pred EEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCC
Confidence 9988422223333311 11 45666777 77543 4677888889999999843 2111236777765 457
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC---CCeeeEEEe--C
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ---KDLKELHWH--T 448 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~---~~V~~v~w~--p 448 (479)
+-.+...+.. ..|..+-++.-|..++..... .....++....+. ..+..|+.- +
T Consensus 182 ~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~--------------------~~~~~~v~~~~~g~l~aDvEGLai~~~~ 240 (355)
T 3amr_A 182 TEGMAADDEY-GRLYIAEEDEAIWKFSAEPDG--------------------GSNGTVIDRADGRHLTRDIEGLTIYYAA 240 (355)
T ss_dssp EEEEEEETTT-TEEEEEETTTEEEEEECSTTS--------------------CSCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred cceEEEcCCC-CeEEEecccceEEEEeCCcCC--------------------CCCceEEEEecCCccccCcceEEEEecC
Confidence 8888898855 788888888555444433221 1111333222111 258888884 4
Q ss_pred CCC-cEEEEEcCC-CceEEeee
Q 039302 449 QVP-GMIVSTAAD-GFNILMPS 468 (479)
Q Consensus 449 ~~~-~ll~s~~~d-gi~iw~~~ 468 (479)
++. ++++|+-.+ .+.+|+..
T Consensus 241 ~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 241 DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCEEEEEEcCCCCEEEEEECC
Confidence 444 577777444 48888774
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.048 Score=51.06 Aligned_cols=206 Identities=9% Similarity=0.047 Sum_probs=117.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CC--CceEEEEe-
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HK--DEGYAIDW- 241 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~~l~~- 241 (479)
..--.+++|.+....++++.-..|+|..|+...... ..+ .+.+ .. ..+.+|.|
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-------------------~~~-~~~~~s~~g~~~~~~sGl~~~ 71 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-------------------FNV-VIDGASSNGDGEQQMSGLSLL 71 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-------------------EEE-CCTTTCCSSCCSEEEEEEEES
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-------------------EEE-ecCCccccCCCcceeeEEEEe
Confidence 334557899887656777655899999999864100 001 1211 11 13579999
Q ss_pred --CCCCCCeEEEEe-------------CCCeEEEEecC---CCCc-cccCCCCcc-c-------CCCcEEEEEECCCCCc
Q 039302 242 --NPVAPGRLVSGD-------------CNSCIHLWEPA---SDAT-WNVDPNPFI-G-------HAASVEDLQWSPTESD 294 (479)
Q Consensus 242 --s~~~~~~l~sg~-------------~dg~I~lwd~~---~~~~-~~~~~~~~~-~-------h~~~V~~l~~sp~~~~ 294 (479)
.|.+. ++++.. .+..|..+|+. +++. +........ + -....++++..++|+
T Consensus 72 ~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn- 149 (334)
T 2p9w_A 72 THDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN- 149 (334)
T ss_dssp SSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-
T ss_pred ccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-
Confidence 57753 444433 15789999998 4433 221111000 0 113589999999998
Q ss_pred EEEEEeCC-CcEEEEEcCCCCceeeEE------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe
Q 039302 295 VFASCSVD-GNIAIWDTRVGKSALMSF------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 295 ~l~s~s~d-g~I~iwD~~~~~~~~~~~------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
..++++.- +.|...+..... +..+ .......+.|+++|++ .+|++....|.|..+|++.... .++. .
T Consensus 150 aYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~--~~v~-~ 223 (334)
T 2p9w_A 150 SYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYA--WPEP-V 223 (334)
T ss_dssp EEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSC--CCEE-C
T ss_pred EEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcc--eeec-c
Confidence 88888877 777766665432 2221 1122347899999999 5555555599999999984321 0122 2
Q ss_pred e--cC---CCCeEEE-EEeCCCCCE-EEEEeCCCcEEEEECCC
Q 039302 368 E--YH---KHPVTSI-EWSPHEGST-LAVSSADNQLTIWDLSL 403 (479)
Q Consensus 368 ~--~h---~~~I~~v-~~sp~~~~~-las~s~Dg~I~iwdl~~ 403 (479)
. +. -.....| .--. ++.+ |++.+..+.+.+.+-..
T Consensus 224 ~~~G~~~~~~~~dgilp~~~-~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 224 KINGDFGTLSGTEKIVTVPV-GNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EESSCCCCCTTEEEEEEEEE-TTEEEEEEEETTEEEEEECSST
T ss_pred cccCCcccccCccccccccc-CCEEEEEEcCCCCEEEEECCCC
Confidence 1 21 1223343 2222 3355 56666666666655444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.13 Score=49.07 Aligned_cols=204 Identities=11% Similarity=0.028 Sum_probs=112.1
Q ss_pred EEecC-CcceeEEEEecCCCcEEEEE------------eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec
Q 039302 164 RKVAH-QGCVNRIRAMSQNPHICASW------------ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG 230 (479)
Q Consensus 164 ~~~~H-~~~V~~v~~~p~~~~~lat~------------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479)
+.+.. ....-.+...|+| .+++++ ..+|.|.++|........ +.+ .+.
T Consensus 43 ~~i~~~~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----------------~~l-~~~ 103 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----------------SEL-EII 103 (355)
T ss_dssp EECTTCCSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCE-----------------EEC-EEE
T ss_pred EEeCCCCCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----------------EEE-Ecc
Confidence 44433 3345666778876 444443 168999999987421111 111 122
Q ss_pred C-----CCCceEEEEeCCC--CCCeEEEEe-C--CCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEE
Q 039302 231 G-----HKDEGYAIDWNPV--APGRLVSGD-C--NSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 231 ~-----h~~~v~~l~~s~~--~~~~l~sg~-~--dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~ 299 (479)
+ ..-....|++.++ +..+|+.+. . +.+|.+|++...+........+.+. -...+++.+.++|. ++++.
T Consensus 104 g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~ 182 (355)
T 3sre_A 104 GNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATN 182 (355)
T ss_dssp CSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEE
T ss_pred CCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecC
Confidence 2 1235566666553 333455553 2 4688888876543322112222222 24689999999987 55554
Q ss_pred eC-----------------CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 039302 300 SV-----------------DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS 362 (479)
Q Consensus 300 s~-----------------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~ 362 (479)
.. .|.|.-+|. ++ +..+...-..-|.|+|+|++..++++-+..+.|..|++..... ..
T Consensus 183 ~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~-l~ 257 (355)
T 3sre_A 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LT 257 (355)
T ss_dssp SCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EE
T ss_pred CcEeCCcccccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc-Ee
Confidence 31 234544544 22 2222223345799999999966777777789999999874221 11
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
....+ ...+..-.+++.+.++++.+++..+
T Consensus 258 ~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 258 PLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred cCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 22233 2245567788887323666655533
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.22 Score=51.17 Aligned_cols=55 Identities=9% Similarity=-0.104 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..|.|.-||+.+++ .+-.... ..++.+-.....+ .+++.++.|+.|+.||.++++
T Consensus 451 ~~G~l~A~D~~tG~----~~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 451 GLGQIKAYNAITGD----YKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp CCEEEEEECTTTCC----EEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred CcCeEEEEECCCCC----EEeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEECCCCC
Confidence 34788889998887 4554432 1222211111123 677779999999999999884
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.27 Score=46.39 Aligned_cols=194 Identities=12% Similarity=0.156 Sum_probs=113.0
Q ss_pred CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC----CCC--e-EEEEeC
Q 039302 182 PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV----APG--R-LVSGDC 254 (479)
Q Consensus 182 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~--~-l~sg~~ 254 (479)
..+|+| ...+-+.+||+.. +.+..+.. +.++.++.-|. +.. + +++.-.
T Consensus 41 s~ii~t-~k~~gL~Vydl~G----------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~ 95 (355)
T 3amr_A 41 SKLITT-NKKSGLVVYSLDG----------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS 95 (355)
T ss_dssp CEEEEE-ETTTEEEEEETTS----------------------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS
T ss_pred cEEEEE-cCCCCEEEEcCCC----------------------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC
Confidence 345555 6678899999953 55565543 45566665552 110 2 233333
Q ss_pred --CCeEEEEecCCC-CccccCCC---CcccCCCcEEEEEE--CCC-CCcEEEEEeCCCcEEEEEcCC---CC---ceeeE
Q 039302 255 --NSCIHLWEPASD-ATWNVDPN---PFIGHAASVEDLQW--SPT-ESDVFASCSVDGNIAIWDTRV---GK---SALMS 319 (479)
Q Consensus 255 --dg~I~lwd~~~~-~~~~~~~~---~~~~h~~~V~~l~~--sp~-~~~~l~s~s~dg~I~iwD~~~---~~---~~~~~ 319 (479)
+++|++|++... ........ ++..-...+..+++ +|. +..++++...+|.+..|++.. +. ..+.+
T Consensus 96 ~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~ 175 (355)
T 3amr_A 96 EGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA 175 (355)
T ss_dssp TTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence 579999977421 12111111 11111145666777 774 444677778889999999843 21 13444
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-CceEEEee-cC-CCCeEEEEEe--CCCCCEEEEEe-CC
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-DSVVAHFE-YH-KHPVTSIEWS--PHEGSTLAVSS-AD 393 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-~~~~~~~~-~h-~~~I~~v~~s--p~~~~~las~s-~D 393 (479)
+.. ...+-.|...+.. ..|..+-.+..|..+|.+-.... ...+..+. ++ ...+..|++- +++..+|+++| .+
T Consensus 176 f~l-gsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEC-SSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred ecC-CCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 443 4578888999877 67888888877777775532210 12444442 22 2468888884 33323555555 57
Q ss_pred CcEEEEECC
Q 039302 394 NQLTIWDLS 402 (479)
Q Consensus 394 g~I~iwdl~ 402 (479)
+++.+||..
T Consensus 254 ~s~~Vydr~ 262 (355)
T 3amr_A 254 SSYAIYDRQ 262 (355)
T ss_dssp TEEEEEESS
T ss_pred CEEEEEECC
Confidence 899999996
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.42 Score=45.46 Aligned_cols=254 Identities=11% Similarity=0.095 Sum_probs=128.0
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC---CC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV---AP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~ 246 (479)
.....|+|.|++..++++ ...|.|++++........ . ...+ ..+.........|+|+|+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~--~------------~~~~-~v~~~g~~g~~gia~~pdf~~~g 81 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAP--L------------SGVP-DVWAHGQGGLLDVVLAPDFAQSR 81 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCC--C------------BSCC-CCCCSTTCSEEEEEECTTHHHHC
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeE--e------------cCCc-ccccCCCCCceeEEECCCCCCCC
Confidence 456889999999426655 567999999854311000 0 0000 011112335689999996 33
Q ss_pred CeEEEEe-C-------CCeEEEEecCCCCc----cc--cCCCC---cccCCCcEEEEEECCCCCcEEEEEeC--------
Q 039302 247 GRLVSGD-C-------NSCIHLWEPASDAT----WN--VDPNP---FIGHAASVEDLQWSPTESDVFASCSV-------- 301 (479)
Q Consensus 247 ~~l~sg~-~-------dg~I~lwd~~~~~~----~~--~~~~~---~~~h~~~V~~l~~sp~~~~~l~s~s~-------- 301 (479)
.|..+. . ...|..|++..... .. ..... ...|. ...|.|.|++. ++++.+.
T Consensus 82 -~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~Gd~~~~~~~q 157 (353)
T 2g8s_A 82 -RIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY-LFIALGENNQRPTAQ 157 (353)
T ss_dssp -EEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE-EEEEECCTTCGGGGG
T ss_pred -EEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc-EEEEECCCCCCCccC
Confidence 444442 2 23566666643211 00 00111 12232 35799999996 6666543
Q ss_pred -----CCcEEEEEcCCCC-----------ceeeEE-ecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCCC----
Q 039302 302 -----DGNIAIWDTRVGK-----------SALMSF-KAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKG---- 359 (479)
Q Consensus 302 -----dg~I~iwD~~~~~-----------~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~---- 359 (479)
.|.|.-++....- .....+ .++ .....++|+|..+.++++-.. ++.=.|.-+..+..
T Consensus 158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp 236 (353)
T 2g8s_A 158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWP 236 (353)
T ss_dssp CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTT
T ss_pred CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCC
Confidence 2456666665320 001112 233 346889999943255554322 21112222211110
Q ss_pred -----------------------CCceEEEeecCCCCeEEEEEeCC------CCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 360 -----------------------GDSVVAHFEYHKHPVTSIEWSPH------EGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 360 -----------------------~~~~~~~~~~h~~~I~~v~~sp~------~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
...++..+..| ..+..+.|... .+.+|++.-..+.|...++......
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~--- 312 (353)
T 2g8s_A 237 LATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT--- 312 (353)
T ss_dssp TBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE---
T ss_pred CccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe---
Confidence 01234444433 46678888642 2467777667788887777632100
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCCceEEeee
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADGFNILMPS 468 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dgi~iw~~~ 468 (479)
....+.......+.+|++.|++. |.+++. .+| +||++.
T Consensus 313 ------------------~~~~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g-~I~ri~ 351 (353)
T 2g8s_A 313 ------------------EDGRILTDRGQRIRDVRTGPDGY-LYVLTDESSG-ELLKVS 351 (353)
T ss_dssp ------------------EEEEESGGGCCCEEEEEECTTSC-EEEEECSTTE-EEEEEE
T ss_pred ------------------eeEEcccCCCCceeEEEECCCCc-EEEEEeCCCC-EEEEEe
Confidence 00111111123699999999997 555433 333 777764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.039 Score=55.03 Aligned_cols=164 Identities=10% Similarity=-0.000 Sum_probs=97.0
Q ss_pred ceEEEEeCCC-CCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE-------CCCCCcEEEEEeCCCc-
Q 039302 235 EGYAIDWNPV-APGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW-------SPTESDVFASCSVDGN- 304 (479)
Q Consensus 235 ~v~~l~~s~~-~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~-------sp~~~~~l~s~s~dg~- 304 (479)
....|+|.|. .. .|..+. ..+.|++.|+..+....+ ...-.........|+| ++++..++++...++.
T Consensus 140 ~p~~la~dp~~~~-~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKD-HLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEE-EEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCC-EEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 4678999984 43 455444 446788888876433221 1111112346899999 9999845555444322
Q ss_pred -----EEEEEcCCCCcee-----eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC-------CCCCC-------
Q 039302 305 -----IAIWDTRVGKSAL-----MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR-------LLKGG------- 360 (479)
Q Consensus 305 -----I~iwD~~~~~~~~-----~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr-------~~~~~------- 360 (479)
|.+++........ ..+... ...+.++++|.++.++++-..++.|..+|+. +....
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 6666633311111 222222 2346778899665888888889999999987 33310
Q ss_pred ---CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 361 ---DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 361 ---~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...+... +.....+.|+|+|++..++++-+..++|+.+++.
T Consensus 297 ~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0012222 2234568999999763356666677889986654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.13 Score=49.01 Aligned_cols=159 Identities=8% Similarity=-0.000 Sum_probs=91.3
Q ss_pred ceEEEEeCCCCCCeEEEEe-------------CCCeEEEEecCCCCc--cccCCCC--cccCCCcEEEEEECC--CCCc-
Q 039302 235 EGYAIDWNPVAPGRLVSGD-------------CNSCIHLWEPASDAT--WNVDPNP--FIGHAASVEDLQWSP--TESD- 294 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~-------------~dg~I~lwd~~~~~~--~~~~~~~--~~~h~~~V~~l~~sp--~~~~- 294 (479)
..-.++..|++ ++++++ .+|.|.++|+.+... ....... +.........|.+.+ ++..
T Consensus 51 G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34567777765 455554 699999999974321 1110010 111234566777755 3432
Q ss_pred EEEEEeC--CCcEEEEEcCCCCce---eeEEecC-CCCEEEEEEcCCCCcEEEEEe-----------------CCCeEEE
Q 039302 295 VFASCSV--DGNIAIWDTRVGKSA---LMSFKAH-NADVNVISWNRLASCLLASGS-----------------DDGTFSI 351 (479)
Q Consensus 295 ~l~s~s~--dg~I~iwD~~~~~~~---~~~~~~h-~~~v~~l~~~p~~~~~l~sgs-----------------~dg~i~i 351 (479)
++++-.. +.+|.+|++...... +..+.+. -...|.+.+.+++ .++++.. ..|.|..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 4444333 567888887654322 2222221 2457999999998 7777654 1245655
Q ss_pred EeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
+|.. + ......+ -..-+.|+|+|++..++++-+..++|..|++..
T Consensus 208 ~d~~--~----~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 208 YSPN--D----VRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ECTT--C----CEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EECC--e----EEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 6552 2 1222222 234689999997755566666788999999874
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.19 Score=48.58 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=91.4
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----------e
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-----------A 316 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-----------~ 316 (479)
.|+.+- ++.||.-++...........+..-.-..|..+..+|+|. ++|..+ +..|.|..+..+.. .
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 555555 468888888643332211111000112567799999999 777765 66899998873321 1
Q ss_pred eeEEec------CCCCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCCCCCCceEEEee---------cCCCCeEEEEE
Q 039302 317 LMSFKA------HNADVNVISWNRLAS--CLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---------YHKHPVTSIEW 379 (479)
Q Consensus 317 ~~~~~~------h~~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---------~h~~~I~~v~~ 379 (479)
...+.- ...+|..+.|+|-+. ..|++-..|+.|++||+..... .|. .+. .+...|.+++|
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~--~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE--KPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS--CCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC--CCc-chhccccccCCCcccceEEEEEE
Confidence 112322 246799999999763 3888889999999999987331 133 332 23367899999
Q ss_pred eCCCCCEEEEEe--CCCcEEE
Q 039302 380 SPHEGSTLAVSS--ADNQLTI 398 (479)
Q Consensus 380 sp~~~~~las~s--~Dg~I~i 398 (479)
.+ ++-.|...+ ..|-|+-
T Consensus 188 g~-~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SK-DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CT-TSSCEEEEECTTSCEEEE
T ss_pred cC-CCcEEEEEecCCCCCEEE
Confidence 98 556666655 6777764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.36 Score=45.32 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=90.7
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..++...+..+.+.+++ .+++.+...+..+-+|-... ..+.+ -......+..+.+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~-------------------tW~~~--~~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 158 VQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQT-------------------AWEPH--NRTTSRRLHNMGFTPD 215 (327)
T ss_dssp ECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCS-------------------SCEEE--ECCSSSCEEEEEECTT
T ss_pred ecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCC-------------------ceeEC--CCCCCCccceeEECCC
Confidence 34566788899999877 66666544333333342110 12221 1233457888999887
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe---
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--- 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--- 321 (479)
+. ++.++.+|.+++.....+..|......-..+...+.++.+.+++. +++++ .+|.| ++....++ .-..+.
T Consensus 216 g~--~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~-tW~~~~~~~ 289 (327)
T 2xbg_A 216 GR--LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQ-TWQQDVDVK 289 (327)
T ss_dssp SC--EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCE-EEESSTTS-SCEECGGGT
T ss_pred CC--EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCc-ccEEcCccC
Confidence 64 455566888887743323334321111011234589999998766 55554 47776 34444443 222222
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.....+.++.|.+.+ .+++++.+|.|.-++-
T Consensus 290 ~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 290 KVPSNFYKILFFSPD--QGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred CCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence 124567888887544 4666678898877764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.44 Score=46.07 Aligned_cols=114 Identities=11% Similarity=0.143 Sum_probs=76.4
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc--------CCCCcc------cCCCcEEEEEECCCCCc--EEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV--------DPNPFI------GHAASVEDLQWSPTESD--VFAS 298 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--------~~~~~~------~h~~~V~~l~~sp~~~~--~l~s 298 (479)
.+..+..||+|. +||..+ +..|.|-.+..+..... ..+.+. ....+|..+.|||-+.+ .|++
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 678899999997 777776 66899988873321000 000111 12578999999997654 8999
Q ss_pred EeCCCcEEEEEcCCCC-ceeeEE---------ecCCCCEEEEEEcCCCCcEEEEE--eCCCeEEEE
Q 039302 299 CSVDGNIAIWDTRVGK-SALMSF---------KAHNADVNVISWNRLASCLLASG--SDDGTFSIH 352 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~-~~~~~~---------~~h~~~v~~l~~~p~~~~~l~sg--s~dg~i~iw 352 (479)
-..|++|++||+.... .+. .+ ......|.+++|..++ -.|... +..|-|+-.
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence 9999999999998632 122 22 1233678999999966 555554 477877643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.33 E-value=1.8 Score=48.06 Aligned_cols=144 Identities=6% Similarity=0.066 Sum_probs=85.9
Q ss_pred CeEEEEe----------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 247 GRLVSGD----------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 247 ~~l~sg~----------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.+|+.|. ..|.|+++++... .... ..-....++|++++-- +| .|++|- ..+|++|++...+..
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~l--v~~~~v~g~v~al~~~-~g--~Lla~i-g~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQT--VAEKEVKGAVYSMVEF-NG--KLLASI-NSTVRLYEWTTEKEL 917 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEE--EEEEEESSCEEEEEEE-TT--EEEEEE-TTEEEEEEECTTSCE
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEE--EEEEEcCCcCEEEeee-CC--EEEEEc-CCEEEEEECCCCceE
Confidence 4888886 4588999998732 2111 1112336788888743 23 344433 478999999876422
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe--ecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~--~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
......+. .|..+.....+ ++++.|..-..|.++-.+.... .+..+ ..+..+++++.+--+ ..++.+..+|
T Consensus 918 ~~~~~~~~-~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~~~---~L~~~a~D~~~~~vta~~~ld~--~t~l~aD~~g 990 (1158)
T 3ei3_A 918 RTECNHYN-NIMALYLKTKG-DFILVGDLMRSVLLLAYKPMEG---NFEEIARDFNPNWMSAVEILDD--DNFLGAENAF 990 (1158)
T ss_dssp EEEEEECC-CSCEEEEEEET-TEEEEEESSBCEEEEEEETTTT---EEEEEEECCSCBCEEEEEEEET--TEEEEEETTS
T ss_pred EEEeeccc-cEEEEEEeccC-CEEEEEEhhheEEEEEEEcCCC---eEEEEEeecccccEEEEEEEcc--CcEEEEcCCC
Confidence 21111121 12222332234 6888888777777765443321 23333 335667899988643 5778888999
Q ss_pred cEEEEECCCC
Q 039302 395 QLTIWDLSLE 404 (479)
Q Consensus 395 ~I~iwdl~~~ 404 (479)
.|.+......
T Consensus 991 Nl~vl~~~~~ 1000 (1158)
T 3ei3_A 991 NLFVCQKDSA 1000 (1158)
T ss_dssp EEEEEEECTT
T ss_pred cEEEEecCCC
Confidence 9999888764
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.9 Score=44.06 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=129.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC----CceEEEEeCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK----DEGYAIDWNPV 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~~ 244 (479)
...|.-=+|-... .|+--+ +..|+-|++.. ...|...|..|. ..|.....+++
T Consensus 105 ~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~--------------------~s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 105 TDDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp SSCCCEEEEEETT--EEEEEC-SSEEEEEESSS--------------------SCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCCceEEEecCCC--eEEEEc-CCeeEEecccC--------------------CCCchhheecchhcccceEEEEEECCC
Confidence 3455555665544 343323 35799999976 256667776654 36777777888
Q ss_pred CCCeEEEEe------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCC---CcEEEEEcCCC
Q 039302 245 APGRLVSGD------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVD---GNIAIWDTRVG 313 (479)
Q Consensus 245 ~~~~l~sg~------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~d---g~I~iwD~~~~ 313 (479)
.+-.+++|- -.|.+.+|....... +.+.||.+.-..+...-+ ...+|+.+... +.++|-++...
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCCE-----EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred CCeEEEEeecccCCcccceEEEeecccccc-----chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 773344442 347889999876433 557888766655554322 12355555543 78999998643
Q ss_pred ---Ccee--eE---E---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 314 ---KSAL--MS---F---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 314 ---~~~~--~~---~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
..+. .. + .+-.+---++..++.. .++..-+.-|.|++||+.++. ++..-+-...+|-.-+-+..
T Consensus 237 ~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt----~i~~nrIs~~~iF~t~~~~~ 311 (494)
T 1bpo_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT----CIYMNRISGETIFVTAPHEA 311 (494)
T ss_dssp CTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEETT
T ss_pred ccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccce----eeeeecccCCceEEecccCC
Confidence 1111 11 1 1123345577888777 677788899999999999998 78877777788877666665
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
. .=++.....|.|.--.+....
T Consensus 312 ~-~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 312 T-AGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp T-TEEEEEETTCEEEEEEECTTT
T ss_pred C-CcEEEEccCceEEEEEEcccc
Confidence 5 344455588888877776553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.26 Score=50.52 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=50.5
Q ss_pred CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe-EEEEEe
Q 039302 302 DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV-TSIEWS 380 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I-~~v~~s 380 (479)
+|.|..||+.+++ .+-+..... .+..-.....+ .+++.|+.||.++.||.++++ .+..++.....+ .-+.|.
T Consensus 465 ~G~l~A~D~~tG~-~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~----~lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGK-VVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK----ELWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCC-EEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEE
T ss_pred cceEEEEECCCCC-EEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCC----EEEEecCCCCcccCceEEE
Confidence 6889999999986 333333221 12111111124 577889999999999999998 777776533222 125555
Q ss_pred CCCCCEEEEEeC
Q 039302 381 PHEGSTLAVSSA 392 (479)
Q Consensus 381 p~~~~~las~s~ 392 (479)
.++..++++.+.
T Consensus 538 ~~G~qYv~~~~G 549 (582)
T 1flg_A 538 QDGEQYLGVTVG 549 (582)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEcc
Confidence 545345554433
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.02 E-value=0.52 Score=52.35 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=89.5
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s 242 (479)
.....++.|++++-.. | +++|+. ..+|+||++... +.+. ....+. .+..+...
T Consensus 880 ~~~~v~g~v~al~~~~-g-~Lla~i--g~~l~vy~l~~~---------------------~~L~~~~~~~~-~i~~~~l~ 933 (1158)
T 3ei3_A 880 AEKEVKGAVYSMVEFN-G-KLLASI--NSTVRLYEWTTE---------------------KELRTECNHYN-NIMALYLK 933 (1158)
T ss_dssp EEEEESSCEEEEEEET-T-EEEEEE--TTEEEEEEECTT---------------------SCEEEEEEECC-CSCEEEEE
T ss_pred EEEEcCCcCEEEeeeC-C-EEEEEc--CCEEEEEECCCC---------------------ceEEEEeeccc-cEEEEEEe
Confidence 3445578999988764 4 566553 478999999761 1121 111111 13333333
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC------ce
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------SA 316 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------~~ 316 (479)
..+. +++.|+.-..|.+...+....... ...-..+...++++.+-.++ .++.+..+|.|.+....... ..
T Consensus 934 ~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~-~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~~~~~~~~~~~ 1009 (1158)
T 3ei3_A 934 TKGD-FILVGDLMRSVLLLAYKPMEGNFE-EIARDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDSAATTDEERQH 1009 (1158)
T ss_dssp EETT-EEEEEESSBCEEEEEEETTTTEEE-EEEECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECTTCCSTTGGGB
T ss_pred ccCC-EEEEEEhhheEEEEEEEcCCCeEE-EEEeecccccEEEEEEEccC--cEEEEcCCCcEEEEecCCCCCCccccce
Confidence 3454 999999888888876543221110 00112234568888886544 68889999999998765421 11
Q ss_pred ee-EE-ecCCCCEEEEE---EcCCC--------CcEEEEEeCCCeEEEE
Q 039302 317 LM-SF-KAHNADVNVIS---WNRLA--------SCLLASGSDDGTFSIH 352 (479)
Q Consensus 317 ~~-~~-~~h~~~v~~l~---~~p~~--------~~~l~sgs~dg~i~iw 352 (479)
+. .- ......|+++. +.+.+ ...++.|+.+|.|.+.
T Consensus 1010 L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1010 LQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred eeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 11 11 11245577775 33322 2456777788877765
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.33 Score=49.81 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=83.7
Q ss_pred EEEEeCCCeEEEEecCCCCc-cccCCCCc----ccCCCcEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCcee
Q 039302 249 LVSGDCNSCIHLWEPASDAT-WNVDPNPF----IGHAASVEDLQWSPTESDVFASCS------VDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~-~~~~~~~~----~~h~~~V~~l~~sp~~~~~l~s~s------~dg~I~iwD~~~~~~~~ 317 (479)
|+.++.|+.|..+|..+++. |....... .....++. . ++ .+++++ .+|.|+-+|.++++ .+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v----~-~g--~V~vg~~g~e~g~~g~v~A~D~~TG~-~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV----V-KD--KVIIGSSGAELGVRGYLTAYDVKTGE-QV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE----E-TT--EEEECCBCGGGTCCCEEEEEETTTCC-EE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE----E-CC--EEEEEecccccCCCCeEEEEECCCCc-EE
Confidence 88898999999999988765 32211110 00111211 1 23 444444 38999999999986 33
Q ss_pred eEEecCCCC-------------------------------------E-EEEEEcCCCCcEEEEEeCC-------------
Q 039302 318 MSFKAHNAD-------------------------------------V-NVISWNRLASCLLASGSDD------------- 346 (479)
Q Consensus 318 ~~~~~h~~~-------------------------------------v-~~l~~~p~~~~~l~sgs~d------------- 346 (479)
-.+...... + ..+++.+.. .++..+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~ 274 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDN 274 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCc
Confidence 333221110 0 134555666 566666554
Q ss_pred ---CeEEEEeCCCCCCCCceEEEeec--CC--------CCeEEEEEe-CCCC---CEEEEEeCCCcEEEEECCCCC
Q 039302 347 ---GTFSIHDLRLLKGGDSVVAHFEY--HK--------HPVTSIEWS-PHEG---STLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 347 ---g~i~iwDlr~~~~~~~~~~~~~~--h~--------~~I~~v~~s-p~~~---~~las~s~Dg~I~iwdl~~~~ 405 (479)
+.|.-+|.++++ .+-.+.. |. .++. +... . ++ .+++.++.+|.++++|..+++
T Consensus 275 ~y~~sv~Ald~~TG~----~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 275 KWTMTIFGRDADTGE----AKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp TTSSEEEEEETTTCC----EEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccceEEEEeCCCCc----eeeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCC
Confidence 389999999987 5555543 21 1222 2222 2 33 467778899999999988764
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.36 Score=45.91 Aligned_cols=156 Identities=12% Similarity=0.140 Sum_probs=84.4
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCC---CCcEEEEEeCC-----C
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPT---ESDVFASCSVD-----G 303 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~d-----g 303 (479)
-..-.+|+|.|++. |+.+...|.|.+++ .+....+ ....+.........|+|+|+ +..++++-+.. +
T Consensus 30 l~~P~~ia~~pdG~--l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGG--MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSC--EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCe--EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34567999999985 55556679999998 2221111 01112222456889999998 55355555433 5
Q ss_pred cEEEEEcCCCC----ceeeE-Ee---cCCCCEEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCCCCCC--
Q 039302 304 NIAIWDTRVGK----SALMS-FK---AHNADVNVISWNRLASCLLASGSD-------------DGTFSIHDLRLLKGG-- 360 (479)
Q Consensus 304 ~I~iwD~~~~~----~~~~~-~~---~h~~~v~~l~~~p~~~~~l~sgs~-------------dg~i~iwDlr~~~~~-- 360 (479)
.|..|+..... ..+.. +. ........|+|.|++ .++++-++ .|.|.-++....-..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 68888876431 11111 22 111234689999999 66666432 245666665431000
Q ss_pred --------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 361 --------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 361 --------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
...+. -.+|. ....++|+|..+.++++-...+.
T Consensus 185 pf~~~~~~~~~i~-a~G~r-np~g~a~d~~~g~l~v~d~g~~~ 225 (352)
T 2ism_A 185 PFLGRRGARPEVY-SLGHR-NPQGLAWHPKTGELFSSEHGPSG 225 (352)
T ss_dssp TTTTCTTSCTTEE-EECCS-EECCCEECTTTCCEEEEEECC--
T ss_pred cccCCCCCCccEE-EEcCC-CcccEEEECCCCCEEEEEcCCCC
Confidence 00121 12333 34678999955466665444333
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.87 Score=41.73 Aligned_cols=144 Identities=13% Similarity=0.220 Sum_probs=71.6
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCce-
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~~- 316 (479)
.++.|+.+ ..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-.
T Consensus 115 lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 115 IYVSGGFDGSRRHTSMERYDPNID-QWSMLG-DMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp EEEECCBCSSCBCCEEEEEETTTT-EEEEEE-ECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred EEEEcccCCCcccceEEEEcCCCC-eEEECC-CCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 66666543 36888888663 333211 11111111112222 444 77777754 45889998876311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
+..+........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.|+
T Consensus 190 ~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 261 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVL---RGRLYAIAG 261 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred CCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEE---CCEEEEEcC
Confidence 1111111111223333 34 788888764 468999998765 1122212111112222333 347778777
Q ss_pred CC-----CcEEEEECCCC
Q 039302 392 AD-----NQLTIWDLSLE 404 (479)
Q Consensus 392 ~D-----g~I~iwdl~~~ 404 (479)
.+ ..|.+||+...
T Consensus 262 ~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 262 YDGNSLLSSIECYDPIID 279 (301)
T ss_dssp BCSSSBEEEEEEEETTTT
T ss_pred cCCCcccccEEEEcCCCC
Confidence 65 35778887654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=1.1 Score=42.52 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=83.5
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---CCcEEEEEeC---C----
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---ESDVFASCSV---D---- 302 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~---d---- 302 (479)
-....+|+|.|++. |+.+..+|.|++++. .+.........+.........|+|+|+ +..++++-+. +
T Consensus 28 l~~P~~ia~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34678999999874 666667799999974 322111101111122356889999997 4535555442 3
Q ss_pred CcEEEEEcCCCC------ceeeE-Eec-CCCCEEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCCCCCCC
Q 039302 303 GNIAIWDTRVGK------SALMS-FKA-HNADVNVISWNRLASCLLASGSD-------------DGTFSIHDLRLLKGGD 361 (479)
Q Consensus 303 g~I~iwD~~~~~------~~~~~-~~~-h~~~v~~l~~~p~~~~~l~sgs~-------------dg~i~iwDlr~~~~~~ 361 (479)
..|..|+..... ..+.. +.. .......|.|.|++ .++++-++ .|.|.-++....-...
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 567777766431 11111 221 11234679999999 66666433 2456555554220000
Q ss_pred -----ceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 362 -----SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 362 -----~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
..+. -.+|.. ...++|+|..+.++++-..
T Consensus 184 npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 184 NPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp SSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEECC
T ss_pred CCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEecC
Confidence 0122 233443 3689999955466665443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.91 E-value=1.3 Score=42.09 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=81.8
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC-C-CCcccCCCcEEEEEECCC---CCcEEEEEeC-------
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-P-NPFIGHAASVEDLQWSPT---ESDVFASCSV------- 301 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-~-~~~~~h~~~V~~l~~sp~---~~~~l~s~s~------- 301 (479)
.....|+|.|++. .|+.+...|.|++++........+. . ..+.........|+|+|+ +..++++-+.
T Consensus 18 ~~P~~i~~~pdG~-~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNH-GMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTC-CEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCC-EEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3568999999985 3777778899999985321110000 0 111122346789999996 4435555433
Q ss_pred CCcEEEEEcCCCCc------eeeE-Ee---cCCCCEEEEEEcCCCCcEEEEEeCC-------------CeEEEEeCCCCC
Q 039302 302 DGNIAIWDTRVGKS------ALMS-FK---AHNADVNVISWNRLASCLLASGSDD-------------GTFSIHDLRLLK 358 (479)
Q Consensus 302 dg~I~iwD~~~~~~------~~~~-~~---~h~~~v~~l~~~p~~~~~l~sgs~d-------------g~i~iwDlr~~~ 358 (479)
...|..|++..... .+.. +. ........|.|.|++ .++++-++. |.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 23566666653310 1111 11 111224679999999 666665442 467666765321
Q ss_pred CC----------CceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 359 GG----------DSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 359 ~~----------~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.. ...+.. .+|. ....++|+|..+.++++
T Consensus 176 p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEE
Confidence 00 001221 2333 45789999954355554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.89 E-value=2.6 Score=39.73 Aligned_cols=247 Identities=13% Similarity=0.096 Sum_probs=127.9
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe----cCCCCceEEEEeC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF----GGHKDEGYAIDWN 242 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s 242 (479)
..-...+.|+|.|++ .++++--..|.|++++..... ...+..+ .........|+++
T Consensus 29 ~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~-------------------~~~v~~~~~v~~~g~~GllGia~~ 88 (347)
T 3das_A 29 TGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGR-------------------KTELGEVPGVSPSGEGGLLGIALS 88 (347)
T ss_dssp CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-------------------EEEEEECTTCCCBTTBSEEEEEEC
T ss_pred cCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCc-------------------EeeecccCceeecCCCCceeeEec
Confidence 335677899999999 677774448999998754311 0111111 1223467899999
Q ss_pred CC--CCCeEEEE---eCCCeEEEEecCCCC----c---cccC---CCCcccCCCcEEEEEECCCCCcEEEEEeC------
Q 039302 243 PV--APGRLVSG---DCNSCIHLWEPASDA----T---WNVD---PNPFIGHAASVEDLQWSPTESDVFASCSV------ 301 (479)
Q Consensus 243 ~~--~~~~l~sg---~~dg~I~lwd~~~~~----~---~~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------ 301 (479)
|+ ..+.|... ..++.|.-|.+.... . .... ...-..|. ...|.|.|++. ++++.+.
T Consensus 89 Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~-Lyvt~Gd~~~~~~ 165 (347)
T 3das_A 89 PDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKM-LYAGTGESGDTGL 165 (347)
T ss_dssp TTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSC-EEEECBCTTCGGG
T ss_pred cccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCC-EEEEECCCCCCcc
Confidence 96 12245443 234566666664421 1 0000 00112233 45799999997 6666542
Q ss_pred -------CCcEEEEEcCCCC-------ceeeEEecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCCC-------
Q 039302 302 -------DGNIAIWDTRVGK-------SALMSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKG------- 359 (479)
Q Consensus 302 -------dg~I~iwD~~~~~-------~~~~~~~~h~~~v~~l~~~p~~~~~l~sg-s~dg~i~iwDlr~~~~------- 359 (479)
.|.|.-.+....- .....-.+|. ....++|+|++ .++++- +.++.=.|--+..+..
T Consensus 166 ~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~ 243 (347)
T 3das_A 166 SQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAE 243 (347)
T ss_dssp TTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCC
T ss_pred ccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCccc
Confidence 2444444544220 0111113443 35688999977 555543 2333222222222211
Q ss_pred -------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 360 -------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 360 -------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
...++..+..+......++|.. +.+|...-..+.|....+..... ...++ .
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~-------------------~~~~e-~ 301 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAA-------------------AADPQ-A 301 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEEETTEE-------------------SSCCE-E
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEecCCce-------------------ecceE-E
Confidence 0124555544434667888874 36666666666776666643310 00111 2
Q ss_pred EeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 433 FIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 433 ~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
+.......+.+|+..|++..++++...+
T Consensus 302 ~l~~~~gR~~dv~~~pDG~lyv~td~~~ 329 (347)
T 3das_A 302 FLEGEYGRLRTVAPAGGDKLWLVTSNTD 329 (347)
T ss_dssp ESTTTSSCEEEEEEEETTEEEEEECTTS
T ss_pred eecCCCCCccEEEECCCCcEEEEEcCCC
Confidence 2222234799999999996444444333
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.95 Score=39.61 Aligned_cols=139 Identities=10% Similarity=0.038 Sum_probs=76.4
Q ss_pred eEEEEeCCCeEEEEecCCCCc--cccCCCCcccC--CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----eee
Q 039302 248 RLVSGDCNSCIHLWEPASDAT--WNVDPNPFIGH--AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-----ALM 318 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~--~~~~~~~~~~h--~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-----~~~ 318 (479)
+|+....| +++.=.+..... +... ....+. =..+.+++|+|++. +.++ .+|.+.-.+..+... .-.
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~-a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLAR-ATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHH-SEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhh-ccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccccc
Confidence 67777777 766655544331 2100 111222 23677999999887 6666 677766666544221 111
Q ss_pred EEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE---EEe-ecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 319 SFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV---AHF-EYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 319 ~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~---~~~-~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+- .--....++.|.|++ .+.++ .||.|+-++-.+.... .-+ ..+ ..-=..+..|.+.|++ .+.+.. |
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--d 153 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--G 153 (236)
T ss_dssp EEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--T
T ss_pred EecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCc-eEEEEe--C
Confidence 110 001124789999999 67666 5599888875433211 010 111 1111467899999965 666665 7
Q ss_pred CcEEE
Q 039302 394 NQLTI 398 (479)
Q Consensus 394 g~I~i 398 (479)
+.++-
T Consensus 154 g~lyr 158 (236)
T 1tl2_A 154 QQFYK 158 (236)
T ss_dssp TEEEE
T ss_pred CcEEe
Confidence 77543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.32 E-value=7.5 Score=43.64 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=112.0
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg 256 (479)
.+|.. .++|--. ..++.|||+.. ...+..+.- ...|.-=.|-... .|+-.+ +.
T Consensus 73 MnP~~-~iiALra-g~~lQiFnl~~---------------------k~klks~~~-~e~VvfWkWis~~--~l~lVT-~~ 125 (1630)
T 1xi4_A 73 MNPAS-KVIALKA-GKTLQIFNIEM---------------------KSKMKAHTM-TDDVTFWKWISLN--TVALVT-DN 125 (1630)
T ss_pred cCCCc-ceEEEec-CCeEEEeehHH---------------------hhhhccccc-CCCceEEEecCCC--eeEEEc-CC
Confidence 34444 5666543 67899999987 333333332 2356556666544 444444 56
Q ss_pred eEEEEecCCCCccccCCCCcccC----CCcEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 257 CIHLWEPASDATWNVDPNPFIGH----AASVEDLQWSPTESDVFASCS------VDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s------~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
.|+.|++...... ...|..| ...|..-..+++.+-++++|- ..|.+.+|.+.... .+.+.+|...
T Consensus 126 aVyHW~~~~~s~P---~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~ 200 (1630)
T 1xi4_A 126 AVYHWSMEGESQP---VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAAS 200 (1630)
T ss_pred eEEEeccCCCCcc---HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhh
Confidence 9999999642221 1233333 356777777888883333332 45889999988653 3445666554
Q ss_pred EEEEEEc--CCCCcEEEEEeC---CCeEEEEeCCCCCCCC-----ceEEEeec---CCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 327 VNVISWN--RLASCLLASGSD---DGTFSIHDLRLLKGGD-----SVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 327 v~~l~~~--p~~~~~l~sgs~---dg~i~iwDlr~~~~~~-----~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~D 393 (479)
...+... +....+++.+.. .+.++|-++.....+. ..+..+.. -..-..++..++.. .++..-+.-
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~ 279 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKY 279 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecC
Confidence 4333332 111123332222 2689999986541101 11111111 12334577888865 677788889
Q ss_pred CcEEEEECCCCCC
Q 039302 394 NQLTIWDLSLEKD 406 (479)
Q Consensus 394 g~I~iwdl~~~~~ 406 (479)
|.|.+||+.++..
T Consensus 280 G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 280 GYIHLYDLETGTC 292 (1630)
T ss_pred ceEEEEecccchh
Confidence 9999999999864
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.24 E-value=3 Score=41.00 Aligned_cols=110 Identities=9% Similarity=0.129 Sum_probs=61.4
Q ss_pred CcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEe------cCCCCEEEEEEcCC---CCcEEEEEeC-----
Q 039302 281 ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFK------AHNADVNVISWNRL---ASCLLASGSD----- 345 (479)
Q Consensus 281 ~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~------~h~~~v~~l~~~p~---~~~~l~sgs~----- 345 (479)
.....|+|.|+++ ++++-...+.|++++...+.. .+..+. .....+..|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3467999999998 666544335788887654432 122221 12456789999995 4355555442
Q ss_pred -------CCeEEEEeCCCCCCC---CceEE-Eeec-CCCCeEEEEEeCCCCCEEEEEeC
Q 039302 346 -------DGTFSIHDLRLLKGG---DSVVA-HFEY-HKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 346 -------dg~i~iwDlr~~~~~---~~~~~-~~~~-h~~~I~~v~~sp~~~~~las~s~ 392 (479)
...|.-|++...... ...+. .+.. .......|.|.|++ .++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 235555655332100 01122 1221 12347899999966 66666553
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.81 E-value=4.5 Score=38.10 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=84.7
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc--CCCCcccCCCcEEEEEECCC---CCcEEEEEe--
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV--DPNPFIGHAASVEDLQWSPT---ESDVFASCS-- 300 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s-- 300 (479)
.+...-..-+.|+|.|++. +|++--..|.|++++...+....+ ....+.........|+|+|+ +..++++-+
T Consensus 26 ~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3444445778999999986 665555589999998654332111 01122233567899999995 342444322
Q ss_pred CCCcEEEEEcCCC-----C----ceee-EEe-cCCCCEEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCC
Q 039302 301 VDGNIAIWDTRVG-----K----SALM-SFK-AHNADVNVISWNRLASCLLASGSD-------------DGTFSIHDLRL 356 (479)
Q Consensus 301 ~dg~I~iwD~~~~-----~----~~~~-~~~-~h~~~v~~l~~~p~~~~~l~sgs~-------------dg~i~iwDlr~ 356 (479)
.++.|.-|.+... . ..+. .+. ........|.|.|++ .++++-++ .|.|.-.+...
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 3445655655441 1 1111 121 112234679999999 66666442 34444445432
Q ss_pred CCCCC-----ceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 357 LKGGD-----SVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 357 ~~~~~-----~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.-... ..+. -.+|.. ...++|+|++ .++++=
T Consensus 184 ~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G-~L~~~d 219 (347)
T 3das_A 184 EPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQ-RLFASE 219 (347)
T ss_dssp SBCTTCSSTTCCEE-EBCCSB-CCEEEECTTC-CEEEEE
T ss_pred CccCCCCCCCCeEE-eeCCCC-cceEEECCCC-CEEEEe
Confidence 20000 0122 224543 4689999954 555543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.62 E-value=3.2 Score=38.05 Aligned_cols=144 Identities=14% Similarity=0.261 Sum_probs=71.3
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCce-
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~~- 316 (479)
+++.|+.+ ..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-.
T Consensus 124 iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 124 IYAVGGSHGCIHHNSVERYEPERD-EWHLVA-PMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp EEEECCEETTEECCCEEEEETTTT-EEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred EEEEcCCCCCcccccEEEECCCCC-eEeECC-CCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 55665533 36888898763 443221 11111111122233 344 77777754 45889998875311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
+..+........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.|+
T Consensus 199 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 270 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETET--WTFVAPMKHRRSALGITVH---QGRIYVLGG 270 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred CCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCc--EEECCCCCCCccceEEEEE---CCEEEEEcC
Confidence 1111111112223333 34 788888765 468999988754 1112112111111222222 347777777
Q ss_pred CC-----CcEEEEECCCC
Q 039302 392 AD-----NQLTIWDLSLE 404 (479)
Q Consensus 392 ~D-----g~I~iwdl~~~ 404 (479)
.+ ..|.+||+...
T Consensus 271 ~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 271 YDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp BCSSCBCCEEEEEETTTT
T ss_pred cCCCcccceEEEEcCCCC
Confidence 54 34677887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.62 E-value=4.2 Score=45.56 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=109.6
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC----CCceEEEEeCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH----KDEGYAIDWNPVA 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~ 245 (479)
..|.-=+|-... .|+--+ +..|+-|++.. ...|...|..| +..|..-.-+++.
T Consensus 106 e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~--------------------~s~P~k~fdR~~~L~~~QIinY~~d~~~ 162 (1630)
T 1xi4_A 106 DDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQ 162 (1630)
T ss_pred CCceEEEecCCC--eeEEEc-CCeEEEeccCC--------------------CCccHHHHhcchhcccCeeEEeeeCCCC
Confidence 345555555444 333322 35699999975 13444444444 3466667777777
Q ss_pred CCeEEEEe------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC--CCCCcEEEEEeC---CCcEEEEEcCCC-
Q 039302 246 PGRLVSGD------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS--PTESDVFASCSV---DGNIAIWDTRVG- 313 (479)
Q Consensus 246 ~~~l~sg~------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~l~s~s~---dg~I~iwD~~~~- 313 (479)
+-.+++|- -.|.+.+|....... +.+.||.+.-..+... +....+|+.+.. .+.++|-++...
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er~~s-----Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeecccccc-----hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 63344432 458899999866432 5677776655444442 222224444332 278999998553
Q ss_pred --Ccee-----eEEe---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 314 --KSAL-----MSFK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 314 --~~~~-----~~~~---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
..+. ..+. +-..--.++..++.. .++..-+.-|.|++||+.++. ++..-+-...+|-..+-+...
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~----~i~~~ris~~~iF~~~~~~~~ 312 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT----CIYMNRISGETIFVTAPHEAT 312 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccch----hhhhccccCCceEEeccCCCC
Confidence 1111 0111 112223456667766 577777889999999999987 555444445555444444333
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 039302 384 GSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~ 402 (479)
+.+++ ....|.|.--.+.
T Consensus 313 ~g~~~-vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 313 AGIIG-VNRKGQVLSVCVE 330 (1630)
T ss_pred CceEE-EcCCceEEEEEEc
Confidence 23333 3355555544443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.57 E-value=1.5 Score=40.18 Aligned_cols=142 Identities=8% Similarity=0.190 Sum_probs=72.3
Q ss_pred eEEEEeCC------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCC
Q 039302 248 RLVSGDCN------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV---------DGNIAIWDTRV 312 (479)
Q Consensus 248 ~l~sg~~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~ 312 (479)
+++.|+.+ ..+.+||+.+. .|..... +.........+.+ ++. +++.|+. -..+.+||+.+
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~-~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTE-SWHTKPS-MLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTT-EEEEECC-CSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTT
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCC-ceEeCCC-CcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCC
Confidence 66666654 46888998763 3432111 1111111122222 344 6777653 34588999987
Q ss_pred CCceeeEEec---CCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 313 GKSALMSFKA---HNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 313 ~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
.. -..+.. ....-..+.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++
T Consensus 179 ~~--W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~ 248 (306)
T 3ii7_A 179 ET--WTELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAV---GS 248 (306)
T ss_dssp TE--EEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTE--EEECCCCSCCBSCCEEEEE---TT
T ss_pred Ce--EEECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCc--EEECCCCCCCccceeEEEE---CC
Confidence 63 112211 1111222233 34 677877754 358899988754 1122222211122233333 34
Q ss_pred CEEEEEeCC-----CcEEEEECCCC
Q 039302 385 STLAVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 385 ~~las~s~D-----g~I~iwdl~~~ 404 (479)
.+++.|+.+ +.|.+||+...
T Consensus 249 ~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 249 IVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 788888854 45788888765
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=2.2 Score=37.29 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=80.8
Q ss_pred EEecC--CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCceEEE
Q 039302 164 RKVAH--QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEGYAI 239 (479)
Q Consensus 164 ~~~~H--~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l 239 (479)
+.+++ =..+..++|+|++ .|.|. .+|.++-.+..+..... - ......+- +-. .-.++
T Consensus 33 ~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~--W-------------~~s~t~IG~~Gw~-~F~a~ 93 (236)
T 1tl2_A 33 TLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDN--W-------------MGRAKKIGNGGWN-QFQFL 93 (236)
T ss_dssp EEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCC--H-------------HHHCEEEECSCGG-GCSEE
T ss_pred cccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCccc--c-------------cccccEecccccc-cceEE
Confidence 34444 2478899999988 56666 66765555543210000 0 00001110 111 13688
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCC--CccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASD--ATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS- 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~--~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~- 315 (479)
.|.|++. +.++ .||.|+-++..+. ..|.-....+-. -=..+..|.|.|++. +.++. |+.+.-+..-+...
T Consensus 94 ~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~ 167 (236)
T 1tl2_A 94 FFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQD 167 (236)
T ss_dssp EECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTC
T ss_pred EECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCc
Confidence 8998885 4444 5699988887332 223211111100 114679999999998 66555 77754322221110
Q ss_pred ----eeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 039302 316 ----ALMSF-KAHNADVNVISWNRLASCLLASGSDDGTF 349 (479)
Q Consensus 316 ----~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i 349 (479)
....+ ...-....-+.|.+++ .++++. +|.+
T Consensus 168 ~wl~~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~~ 203 (236)
T 1tl2_A 168 NWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGKF 203 (236)
T ss_dssp CHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TTEE
T ss_pred ccccccceeccCCcceEEEEEECCCC-cEEEEe--CCeE
Confidence 01111 1222344556788888 666655 6633
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.19 E-value=4.9 Score=36.67 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=71.5
Q ss_pred eEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCce-
Q 039302 248 RLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD------GNIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d------g~I~iwD~~~~~~~- 316 (479)
.++.|+.+ ..+.+||+.+. .|..... +.........+.+ ++. +++.|+.+ ..+.+||..+..-.
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~-~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKD-SWYSKLG-PPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTT-EEEEEEC-CSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred EEEEeCCCCCCcceEEEEeCCCC-eEEECCC-CCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 66666644 57888998764 3332111 1111111122222 344 77777765 45889998876311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSD---------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~---------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+..+........++.+ ++ .+++.|+. -..+.+||+.+.. +..+..+......-..+.+ ++.++
T Consensus 133 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~ 204 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV---KDKIF 204 (306)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEE
T ss_pred CCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE---CCEEE
Confidence 1111111111122233 34 67777764 3458899988764 1122212111111122222 34777
Q ss_pred EEEeCC-----CcEEEEECCCC
Q 039302 388 AVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~D-----g~I~iwdl~~~ 404 (479)
+.|+.+ ..+.+||+...
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTT
T ss_pred EEeCCCCCCCCceEEEeeCCCC
Confidence 777754 45888998765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.06 E-value=1.4 Score=40.41 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=71.6
Q ss_pred eEEEEeCCC-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-------CcEEEEEcCCCCc
Q 039302 248 RLVSGDCNS-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-------GNIAIWDTRVGKS 315 (479)
Q Consensus 248 ~l~sg~~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-------g~I~iwD~~~~~~ 315 (479)
+++.|+.++ .+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-
T Consensus 111 iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 111 LYAVGGFDGSTGLSSVEAYNIKSN-EWFHVA-PMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTT-EEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred EEEEcCCCCCccCceEEEEeCCCC-eEeecC-CCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 666666553 5778888663 343211 11111111122222 344 77776643 3588999887631
Q ss_pred e-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 316 A-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 316 ~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
. +..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~---~~~i~v~ 257 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAV---NGLLYVV 257 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred EECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCC--EeeCCCCCCccccCeEEEE---CCEEEEE
Confidence 1 1111111111223333 34 788888765 368899998754 1122111111111122222 3478888
Q ss_pred EeCCC-----cEEEEECCCC
Q 039302 390 SSADN-----QLTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg-----~I~iwdl~~~ 404 (479)
|+.++ .|.+||+...
T Consensus 258 GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCBCSSSBCCCEEEEETTTT
T ss_pred CCcCCCcccccEEEEcCCCC
Confidence 87653 4888888765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.98 E-value=3.1 Score=37.93 Aligned_cols=145 Identities=11% Similarity=0.165 Sum_probs=73.7
Q ss_pred eEEEEeCC-----CeEEEEecCCCCc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCc
Q 039302 248 RLVSGDCN-----SCIHLWEPASDAT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKS 315 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~ 315 (479)
.++.|+.+ ..+.+||+.+... |.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcCCCCeE
Confidence 66666654 4688999877541 33211 11111111122222 344 77777654 3588899887631
Q ss_pred e-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 316 A-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 316 ~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
. +...........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~ 212 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALL---NDHIYVV 212 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred EECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEE---CCEEEEE
Confidence 1 1111111111222233 34 777887765 458899987764 1122112111111222333 3477888
Q ss_pred EeCC-----CcEEEEECCCC
Q 039302 390 SSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~D-----g~I~iwdl~~~ 404 (479)
|+.+ +.|.+||+.+.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTT
T ss_pred eCCCCCcccceEEEEeCCCC
Confidence 8764 46889998765
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.66 E-value=7.9 Score=37.60 Aligned_cols=196 Identities=12% Similarity=0.155 Sum_probs=119.3
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
-.+|.. .++|--. ..++.|||+.. ...+..+.-. ..|.-=.|-... .|+-.+ +
T Consensus 72 IMnP~~-~iiALra-g~~lQiFnle~---------------------K~klks~~~~-e~VvfWkWis~~--~l~lVT-~ 124 (494)
T 1bpo_A 72 IMNPAS-KVIALKA-GKTLQIFNIEM---------------------KSKMKAHTMT-DDVTFWKWISLN--TVALVT-D 124 (494)
T ss_dssp EECSSS-SCEEEEE-TTEEEEEETTT---------------------TEEEEEEECS-SCCCEEEEEETT--EEEEEC-S
T ss_pred eeCCCC-cEEEEec-CCeEEEEchHH---------------------hhhhcceecC-CCceEEEecCCC--eEEEEc-C
Confidence 345555 5666644 67899999987 3444444433 355556665543 455555 5
Q ss_pred CeEEEEecCCCCccccCCCCcccC----CCcEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCceeeEEecCC
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGH----AASVEDLQWSPTESDVFASCS-------VDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s-------~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..|+-|++....... +.|..| ...|..-..+++.+ +++..+ ..|.+.+|...... .+.+.+|.
T Consensus 125 taVyHWsi~~~s~P~---kvFdR~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGha 198 (494)
T 1bpo_A 125 NAVYHWSMEGESQPV---KMFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHA 198 (494)
T ss_dssp SEEEEEESSSSCCCE---EEEECCGGGTTCEEEEEEECTTSS-EEEEEEEEEETTEEEEEEEEEESTTCC--EEEECCSE
T ss_pred CeeEEecccCCCCch---hheecchhcccceEEEEEECCCCC-eEEEEeecccCCcccceEEEeeccccc--cchheeee
Confidence 699999996532211 222222 35677778899888 554433 35789999998763 45667776
Q ss_pred CCEEEEEEcC--CCCcEEEEEeCC---CeEEEEeCCCCCCCC-----ceEEEee---cCCCCeEEEEEeCCCCCEEEEEe
Q 039302 325 ADVNVISWNR--LASCLLASGSDD---GTFSIHDLRLLKGGD-----SVVAHFE---YHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 325 ~~v~~l~~~p--~~~~~l~sgs~d---g~i~iwDlr~~~~~~-----~~~~~~~---~h~~~I~~v~~sp~~~~~las~s 391 (479)
.....+...- ....+|+.+... +.++|-++....... ..+..+- .-.+--.++..++.. .++..-+
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviT 277 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLIT 277 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEe
Confidence 6554444432 112344444443 789999986541101 1111111 123345688899866 7788888
Q ss_pred CCCcEEEEECCCCC
Q 039302 392 ADNQLTIWDLSLEK 405 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~ 405 (479)
.-|.|++||+.++.
T Consensus 278 K~G~i~lyDleTgt 291 (494)
T 1bpo_A 278 KYGYIHLYDLETGT 291 (494)
T ss_dssp TTSEEEEEETTTCC
T ss_pred cCceEEEEecccce
Confidence 99999999999984
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.90 E-value=10 Score=37.18 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=62.8
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-C-CCCcc--cCCCcEEEEEECCC---CCcEEEEEe
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-D-PNPFI--GHAASVEDLQWSPT---ESDVFASCS 300 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~-~~~~~--~h~~~V~~l~~sp~---~~~~l~s~s 300 (479)
.+...-...++|+|.|++. ++++-...+.|++++..++....+ . ...+. .....+..|+|+|+ +..++++-+
T Consensus 21 ~~a~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEECCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 3333344678999999986 555544334798887654332111 0 11111 12456889999995 443555544
Q ss_pred C------------CCcEEEEEcCCCC------ceeeE-Ee-cCCCCEEEEEEcCCCCcEEEEEeC
Q 039302 301 V------------DGNIAIWDTRVGK------SALMS-FK-AHNADVNVISWNRLASCLLASGSD 345 (479)
Q Consensus 301 ~------------dg~I~iwD~~~~~------~~~~~-~~-~h~~~v~~l~~~p~~~~~l~sgs~ 345 (479)
. ...|.-|+..... ..+.. +. ........|.|.|++ .++++.++
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 2 2345555543221 11111 21 122357999999999 56665443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.96 E-value=5.7 Score=36.44 Aligned_cols=102 Identities=8% Similarity=0.127 Sum_probs=52.7
Q ss_pred EEEEEeCC--------CcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeC-C-----CeEEEEeCCCCCC
Q 039302 295 VFASCSVD--------GNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSD-D-----GTFSIHDLRLLKG 359 (479)
Q Consensus 295 ~l~s~s~d--------g~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-d-----g~i~iwDlr~~~~ 359 (479)
+++.|+.+ ..+.+||..+..- .+..+........++.+ ++ .+++.|+. + ..+.+||+.+..
T Consensus 101 lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~- 176 (315)
T 4asc_A 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MD-LVYVIGGKGSDRKCLNKMCVYDPKKFE- 176 (315)
T ss_dssp EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCTTSCBCCCEEEEETTTTE-
T ss_pred EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CC-EEEEEeCCCCCCcccceEEEEeCCCCe-
Confidence 77777742 4588999887531 11111111111222222 33 67777776 2 468899988754
Q ss_pred CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-----cEEEEECCCC
Q 039302 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN-----QLTIWDLSLE 404 (479)
Q Consensus 360 ~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg-----~I~iwdl~~~ 404 (479)
+..+..+......-..+.+ ++.+++.|+.++ .+.+||+.+.
T Consensus 177 -W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 177 -WKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp -EEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred -EEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCC
Confidence 1112112111111222333 347888887654 4778888765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=90.45 E-value=5.1 Score=36.65 Aligned_cols=136 Identities=12% Similarity=0.128 Sum_probs=67.7
Q ss_pred CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCc-eeeEEecCCCCEEE
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKS-ALMSFKAHNADVNV 329 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~-~~~~~~~h~~~v~~ 329 (479)
..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..- .+..+........+
T Consensus 90 ~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 90 SALDCYNPMTN-QWSPCA-PMSVPRNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGV 164 (308)
T ss_dssp CCEEEEETTTT-EEEECC-CCSSCCBTCEEEEE--TTE-EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred ceEEEECCCCC-eEeECC-CCCcCccccEEEEE--CCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEE
Confidence 46888888763 343221 11111111222233 344 77777643 4588899887531 11111111111223
Q ss_pred EEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-----CcEEEE
Q 039302 330 ISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD-----NQLTIW 399 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D-----g~I~iw 399 (479)
+.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.|+.+ ..+.+|
T Consensus 165 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 165 AVL--NR-LLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp EEE--TT-EEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred EEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence 333 34 777887765 458899987654 1111111111112223333 34778888765 568899
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
|+...
T Consensus 237 d~~~~ 241 (308)
T 1zgk_A 237 DVETE 241 (308)
T ss_dssp ETTTT
T ss_pred eCCCC
Confidence 98765
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=90.09 E-value=20 Score=37.46 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=103.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|.++....++ .|-.|+.+| +..||..... +. .+ .......|.++... + +.|
T Consensus 63 ~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~--f~----------------~~---~~~~~~~i~~i~~~-~--g~l 115 (758)
T 3ott_A 63 TRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADR--YE----------------QP---ETDFPTDVRTMALQ-G--DTL 115 (758)
T ss_dssp SCEEEEEEETTT--EEEEEETTE-EEEEETTTTE--EC----------------CC---SCCCCSCEEEEEEE-T--TEE
T ss_pred ceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCE--EE----------------Cc---ccCCCceEEEEEec-C--CcE
Confidence 457787777766 333445665 7889876521 10 00 00112246666542 2 367
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe--c----C
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--A----H 323 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--~----h 323 (479)
..|+.+ -|..++..+............-....|.++....++. +.+ |+..| |..+|..+.. ...+. . .
T Consensus 116 Wigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~~G-l~~~~~~~~~--~~~~~~~~~~~~~ 189 (758)
T 3ott_A 116 WLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ-IYV-GTYNG-LCRYIPSNGK--FEGIPLPVHSSQS 189 (758)
T ss_dssp EEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC-EEE-EETTE-EEEEETTTTE--EEEECCCCCTTCS
T ss_pred EEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC-EEE-EeCCC-HhhCccCCCc--eEEecCCCccccc
Confidence 777755 6788887654321110000001134688888888777 444 44444 7778876653 22221 1 1
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|.++...+.+ ..|..|+. +.+..+|..+.. +..+. .....|.++....++ .+. .|+.+ -|.+++..
T Consensus 190 ~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~-----~~~~~~l~~~~i~~i~~d~~g-~lW-igT~~-Gl~~~~~~ 259 (758)
T 3ott_A 190 NLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQ-----IKQTEAFHNNSIKSLALDGNG-DLL-AGTDN-GLYVYHND 259 (758)
T ss_dssp SCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTE-----EEEEEEEEEEEEEEEEECTTC-CEE-EEETT-EEEEECCT
T ss_pred cceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCe-----EEeccCCCCCeEEEEEEcCCC-CEE-EEeCC-ceeEEecC
Confidence 2348888888766 44444553 468888877643 22121 123457888877644 443 34444 47778765
Q ss_pred CC
Q 039302 403 LE 404 (479)
Q Consensus 403 ~~ 404 (479)
..
T Consensus 260 ~~ 261 (758)
T 3ott_A 260 TT 261 (758)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.76 E-value=4.5 Score=36.82 Aligned_cols=144 Identities=14% Similarity=0.206 Sum_probs=71.2
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCCce-
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-----NIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-----~I~iwD~~~~~~~- 316 (479)
.++.|+.+ ..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.++ .+.+||+.+..-.
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKD-QWTSVA-NMRDRRSTLGAAVL--NGL-LYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTT-EEEEEC-CCSSCCBSCEEEEE--TTE-EEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred EEEEeCcCCCccccceEEECCCCC-ceeeCC-CCCccccceEEEEE--CCE-EEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66666644 35888888763 333211 11111111122222 344 777777653 4778888775311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD-------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
+..+........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.
T Consensus 139 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~ 210 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL---NNLLYAV 210 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred cCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE---CCEEEEE
Confidence 1111111111222233 33 677777653 358899987754 1122222211112222333 3478888
Q ss_pred EeCC-----CcEEEEECCCC
Q 039302 390 SSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~D-----g~I~iwdl~~~ 404 (479)
|+.+ +.+.+||+.+.
T Consensus 211 GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTT
T ss_pred CCCCCCcccceEEEEeCCCC
Confidence 8764 36888998765
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.69 E-value=12 Score=34.16 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=63.4
Q ss_pred EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-------CcEEEEEcCCCCceeeEEecCC---CCE
Q 039302 258 IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-------GNIAIWDTRVGKSALMSFKAHN---ADV 327 (479)
Q Consensus 258 I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-------g~I~iwD~~~~~~~~~~~~~h~---~~v 327 (479)
+.+||+.+ ..|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+.. -..+.... ..-
T Consensus 80 ~~~~d~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~ 152 (318)
T 2woz_A 80 FFQLDNVS-SEWVGLP-PLPSARCLFGLGEV--DDK-IYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGH 152 (318)
T ss_dssp EEEEETTT-TEEEECS-CBSSCBCSCEEEEE--TTE-EEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESC
T ss_pred EEEEeCCC-CcEEECC-CCCccccccceEEE--CCE-EEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCccccc
Confidence 77788765 3443211 11111111122222 344 77777754 247888888753 11111100 111
Q ss_pred EEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-----CcE
Q 039302 328 NVISWNRLASCLLASGSD------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD-----NQL 396 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D-----g~I 396 (479)
.++. .++ .+++.|+. -..+.+||+.+.. +..+..+.........+.+ ++.+++.|+.+ ..+
T Consensus 153 ~~~~--~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 224 (318)
T 2woz_A 153 NVIS--HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASV 224 (318)
T ss_dssp EEEE--ETT-EEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEE
T ss_pred EEEE--ECC-EEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceE
Confidence 2222 234 67777764 2358999988764 1122112111111122332 34777777754 346
Q ss_pred EEEECCCCC
Q 039302 397 TIWDLSLEK 405 (479)
Q Consensus 397 ~iwdl~~~~ 405 (479)
.+||+.+..
T Consensus 225 ~~yd~~~~~ 233 (318)
T 2woz_A 225 EAFDLKTNK 233 (318)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCe
Confidence 788887653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.77 E-value=16 Score=33.41 Aligned_cols=141 Identities=15% Similarity=0.253 Sum_probs=68.2
Q ss_pred eEEEEeCC-------CeEEEEecCCCCccccCC---CCcccCCCcEEEEEECCCCCcEEEEEeC------CCcEEEEEcC
Q 039302 248 RLVSGDCN-------SCIHLWEPASDATWNVDP---NPFIGHAASVEDLQWSPTESDVFASCSV------DGNIAIWDTR 311 (479)
Q Consensus 248 ~l~sg~~d-------g~I~lwd~~~~~~~~~~~---~~~~~h~~~V~~l~~sp~~~~~l~s~s~------dg~I~iwD~~ 311 (479)
.++.|+.+ ..+.+||+.+ ..|.... ....+|. .+. .++. +++.|+. -..+.+||+.
T Consensus 112 iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~----~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 112 IYVVAGKDLQTEASLDSVLCYDPVA-AKWSEVKNLPIKVYGHN----VIS--HNGM-IYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp EEEEEEEBTTTCCEEEEEEEEETTT-TEEEEECCCSSCEESCE----EEE--ETTE-EEEECCEESSSCBCCCEEEEETT
T ss_pred EEEEcCccCCCCcccceEEEEeCCC-CCEeECCCCCCcccccE----EEE--ECCE-EEEEcCCCCCCCccceEEEEcCC
Confidence 66666643 2578888866 3443211 1112221 222 2344 6777764 2458999998
Q ss_pred CCCce-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 312 VGKSA-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 312 ~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
+..-. +...........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.
T Consensus 184 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~ 255 (318)
T 2woz_A 184 KGDWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISLVSL---AGS 255 (318)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEEEEE---TTE
T ss_pred CCEEEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEEEEE---CCE
Confidence 76311 1111111111222333 34 677777654 357789987764 2122222211111122222 347
Q ss_pred EEEEEeCC--------------CcEEEEECCCC
Q 039302 386 TLAVSSAD--------------NQLTIWDLSLE 404 (479)
Q Consensus 386 ~las~s~D--------------g~I~iwdl~~~ 404 (479)
+++.|+.+ ..|.+||+.+.
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 77777754 34667777654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.59 E-value=16 Score=33.22 Aligned_cols=136 Identities=8% Similarity=0.107 Sum_probs=66.6
Q ss_pred CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-C-----CcEEEEEcCCCCc-eeeEEecCCCCEE
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-D-----GNIAIWDTRVGKS-ALMSFKAHNADVN 328 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-d-----g~I~iwD~~~~~~-~~~~~~~h~~~v~ 328 (479)
..+.+||+.+. .|.... .+.........+.+ ++. +++.|+. + ..+.+||+.+..- .+..+........
T Consensus 117 ~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 117 DSVMCYDRLSF-KWGESD-PLPYVVYGHTVLSH--MDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191 (315)
T ss_dssp CCEEEEETTTT-EEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ceEEEECCCCC-cEeECC-CCCCcccceeEEEE--CCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE
Confidence 35888998763 444321 11111111122222 344 7777776 2 4689999887631 1111111111122
Q ss_pred EEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC---------
Q 039302 329 VISWNRLASCLLASGSDDG-----TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN--------- 394 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg-----~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg--------- 394 (479)
++.+ ++ .+++.|+.++ .+.+||+.+.. +..+..+.........+.+ ++.+++.|+.++
T Consensus 192 ~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~ 263 (315)
T 4asc_A 192 ATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK--WAPFEAFPQERSSLSLVSL---VGTLYAIGGFATLETESGELV 263 (315)
T ss_dssp EEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEEEEEEEEECTTSCEE
T ss_pred EEEE--CC-EEEEEeccCCCCccceEEEEECCCCe--EEECCCCCCcccceeEEEE---CCEEEEECCccccCcCCcccc
Confidence 3333 34 7888887654 58899988764 1122222111112223333 347777777642
Q ss_pred -----cEEEEECCCC
Q 039302 395 -----QLTIWDLSLE 404 (479)
Q Consensus 395 -----~I~iwdl~~~ 404 (479)
.|.+||+.+.
T Consensus 264 ~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 264 PTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEEEEEETTTT
T ss_pred ccccCcEEEecCCCC
Confidence 3667777654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.47 E-value=20 Score=34.02 Aligned_cols=161 Identities=10% Similarity=-0.004 Sum_probs=77.7
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-C--------CCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-H--------AASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h--------~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
..+.+|.+.|...+.|..+...+.|...+ ..+..|......... + ...+.+|.++|.....+..+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 46789999986544666665555554432 223344322111110 0 135899999997544666666544
Q ss_pred EEEEEcCCCCceeeEEec--CC---CCEEEEEEcCCCCcEEEEEeC-----------CCeEEEEeCCCCCCCCceEEE-e
Q 039302 305 IAIWDTRVGKSALMSFKA--HN---ADVNVISWNRLASCLLASGSD-----------DGTFSIHDLRLLKGGDSVVAH-F 367 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~~l~sgs~-----------dg~i~iwDlr~~~~~~~~~~~-~ 367 (479)
|...+-. +. .-..+.. .. ..+.++.++|..+..|.++.. ++...||...........+.. +
T Consensus 255 l~~s~D~-G~-tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~gl 332 (394)
T 3b7f_A 255 IYRMDRR-EG-VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGL 332 (394)
T ss_dssp EEEEETT-TT-EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTS
T ss_pred EEEeCCC-CC-cceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCC
Confidence 4443322 21 1111111 11 345778888754344444432 333456655443221112110 1
Q ss_pred ecCCC----CeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 368 EYHKH----PVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 368 ~~h~~----~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..... -...++++|.++..|+.++.++.|..
T Consensus 333 p~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 333 PTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 10000 11358888866555666766665543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=87.37 E-value=31 Score=36.08 Aligned_cols=228 Identities=13% Similarity=0.056 Sum_probs=123.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|++|.-..+|- +-.|+.+| +..||-..... .. ... ......|.++.-..++ .
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~-~~--------------~~~-----~~~~~~i~~i~~d~~g--~ 75 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQ-HF--------------TYG-----ENNNTRIYCGVIIDNT--Y 75 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEE-CS--------------CTT-----STTSSCEEEEEEETTT--E
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEE-EE--------------ccC-----CCCCceEEEEEEcCCC--c
Confidence 35688888888773 33445666 66677432100 00 000 0123467887765544 6
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe-----cC
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK-----AH 323 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~-----~h 323 (479)
|..|+.+| +..||..+... .. ........|.++... ++ .+-.++.+ -|..+|..+.+ ...+. ..
T Consensus 76 lWigT~~G-l~~yd~~~~~f-~~---~~~~~~~~i~~i~~~-~g--~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~ 144 (758)
T 3ott_A 76 LYMGTDNG-ILVYNYRADRY-EQ---PETDFPTDVRTMALQ-GD--TLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLP 144 (758)
T ss_dssp EEEEETTE-EEEEETTTTEE-CC---CSCCCCSCEEEEEEE-TT--EEEEEETT-EEEEEETTTCC--EEEECHHHHCCS
T ss_pred EEEEeCCC-eEEEeCCCCEE-EC---cccCCCceEEEEEec-CC--cEEEEcCC-cceeEeCCCCe--EEEeccCCCCcC
Confidence 77777654 78899866321 11 111123357777643 44 35555555 57888987653 22231 12
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
...|.++....++ .+.+ |+.. -|..+|..+.. ...+... ...|.++...+.+ ..|-.|+. +-|.
T Consensus 145 ~~~i~~i~~d~~g-~lWi-gt~~-Gl~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~ 214 (758)
T 3ott_A 145 NNTIYSIIRTKDN-QIYV-GTYN-GLCRYIPSNGK-----FEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLF 214 (758)
T ss_dssp CSCEEEEEECTTC-CEEE-EETT-EEEEEETTTTE-----EEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEE
T ss_pred CCeEEEEEEcCCC-CEEE-EeCC-CHhhCccCCCc-----eEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCe
Confidence 3468888888777 4444 4544 57788876543 2222111 2248888887744 43334443 4577
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.++...... ..+. ......|.++.-..++. +.+++ .+|+.+++..
T Consensus 215 ~~~~~~~~~-----------------------~~~~-~l~~~~i~~i~~d~~g~-lWigT-~~Gl~~~~~~ 259 (758)
T 3ott_A 215 QYFPSTGQI-----------------------KQTE-AFHNNSIKSLALDGNGD-LLAGT-DNGLYVYHND 259 (758)
T ss_dssp EEETTTTEE-----------------------EEEE-EEEEEEEEEEEECTTCC-EEEEE-TTEEEEECCT
T ss_pred EEcCCCCeE-----------------------Eecc-CCCCCeEEEEEEcCCCC-EEEEe-CCceeEEecC
Confidence 888765420 0000 01113488888887775 54444 5677777653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=21 Score=37.10 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=79.6
Q ss_pred CCCCeEEEEeCC------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCc
Q 039302 244 VAPGRLVSGDCN------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTRVGKS 315 (479)
Q Consensus 244 ~~~~~l~sg~~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~~~~~ 315 (479)
++. .++.|+.+ ..+.+||+.+ ..|.... .+......... +...++. +++.|+.++ .+.+||+.+..-
T Consensus 451 ~~~-lyv~GG~~~~~~~~~dv~~yd~~t-~~W~~~~-~~p~~R~~h~~-~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 451 NNQ-LLLIGGRKAPHQGLSDNWIFDMKT-REWSMIK-SLSHTRFRHSA-CSLPDGN-VLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp TTE-EEEECCBSSTTCBCCCCEEEETTT-TEEEECC-CCSBCCBSCEE-EECTTSC-EEEECCBCSSCSEEEEETTTTEE
T ss_pred CCE-EEEEcCCCCCCCccccEEEEeCCC-CcEEECC-CCCCCcccceE-EEEcCCE-EEEECCCCCCCCEEEEECCCCce
Confidence 444 66666643 3578888876 3444321 11111111122 2223555 888887655 699999987631
Q ss_pred eeeE----EecCCCCEEEEEEcCCCCcEEEEEeC--C-----CeEEEEeCCCCCC----CCceEEEee-cCCCCeEEEEE
Q 039302 316 ALMS----FKAHNADVNVISWNRLASCLLASGSD--D-----GTFSIHDLRLLKG----GDSVVAHFE-YHKHPVTSIEW 379 (479)
Q Consensus 316 ~~~~----~~~h~~~v~~l~~~p~~~~~l~sgs~--d-----g~i~iwDlr~~~~----~~~~~~~~~-~h~~~I~~v~~ 379 (479)
.... .........++.++.....+++.||. + ..+.+||+.+..- .+..+.... ........+.+
T Consensus 526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI 605 (695)
T ss_dssp EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE
T ss_pred EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe
Confidence 1111 11111222345556553378888876 2 4588999887651 001122211 11122233333
Q ss_pred eCCCCCEEEEEeC--------CCcEEEEECCCCC
Q 039302 380 SPHEGSTLAVSSA--------DNQLTIWDLSLEK 405 (479)
Q Consensus 380 sp~~~~~las~s~--------Dg~I~iwdl~~~~ 405 (479)
. ++.+++.||. -..|.+||+.+..
T Consensus 606 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 606 T--PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp E--TTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred C--CCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 3 1477787874 3468899987653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=86.76 E-value=19 Score=33.01 Aligned_cols=141 Identities=6% Similarity=-0.044 Sum_probs=70.7
Q ss_pred EEEeCCCCCCeEEEEeCC--------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--C
Q 039302 238 AIDWNPVAPGRLVSGDCN--------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--V 301 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~d--------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~ 301 (479)
+--+++++. .|+-+... ..|+..++....... +. .... ..|++.+. .|+-.. .
T Consensus 57 ~~~i~~~g~-~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-----l~--~~~~--~~~s~~g~-~Iy~~~~~~ 125 (302)
T 3s25_A 57 AMYINADKN-YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-----LD--PDPC--IYASLIGN-YIYYLHYDT 125 (302)
T ss_dssp EEEEEECSS-EEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-----EE--CSCE--EEEEEETT-EEEEEEESS
T ss_pred eeeEEEcCC-EEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-----ee--cCCc--cEEEEeCC-EEEEEeecC
Confidence 345567776 55554432 356666665543221 11 1122 25677787 454443 3
Q ss_pred --CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 302 --DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 302 --dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
...|...++.... ...+..+.. ..|++.+..+..+......|.+-++.... ....+. +... ..+
T Consensus 126 ~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~----~~~l~~---~~~~-~~~ 191 (302)
T 3s25_A 126 QTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS----EALFYD---CNCY-KPV 191 (302)
T ss_dssp SSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE----EEEEEC---SCEE-EEE
T ss_pred CCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC----EEEEeC---CCcc-cee
Confidence 3445555555432 334443332 45677775555555446788888876554 222232 2332 345
Q ss_pred eCCCCCEEEEEeCCC-cEEEEECCC
Q 039302 380 SPHEGSTLAVSSADN-QLTIWDLSL 403 (479)
Q Consensus 380 sp~~~~~las~s~Dg-~I~iwdl~~ 403 (479)
+|.++.++.+...++ .|..-++..
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSS
T ss_pred eecCCEEEEEEcCCCcEEEEEECCC
Confidence 687655544443333 444444443
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=17 Score=38.36 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc---CCCcEEEEEECCCCCcEEEEEeCCCc----E
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG---HAASVEDLQWSPTESDVFASCSVDGN----I 305 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~l~s~s~dg~----I 305 (479)
...|.+|+++|..++.++.+...+.|...+ ..+..|......... ....|.+|+++|.....+..+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 358999999998777888888777765554 234455432211110 13479999999965444544442211 3
Q ss_pred EEEEcCCCCceeeEEec---------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCC
Q 039302 306 AIWDTRVGKSALMSFKA---------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHP 373 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~ 373 (479)
.||-.......-..+.. ....+..++++|..+..+..+...+.| |--......+..+..+. .....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 44433333211111111 011356788888765666666644433 32222221121221111 11245
Q ss_pred eEEEEEeCCCCCEEEEEeCC-CcEE
Q 039302 374 VTSIEWSPHEGSTLAVSSAD-NQLT 397 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~D-g~I~ 397 (479)
+..|.++|.++..++++..+ +.|.
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 88999999766566666554 4443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.10 E-value=22 Score=34.87 Aligned_cols=112 Identities=9% Similarity=0.096 Sum_probs=62.9
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cccCCC-Ccc-----cCCCcEEEEEECCC---CCcEEEEEeCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPN-PFI-----GHAASVEDLQWSPT---ESDVFASCSVD 302 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~-~~~-----~h~~~V~~l~~sp~---~~~~l~s~s~d 302 (479)
..-++|+|.|++.++|+++...|.|++++...... ...... .+. ........|+|+|+ +..++++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 35679999999865677788899999997542211 111011 111 11456889999996 23244443321
Q ss_pred ------------CcEEEEEcCCC---------CceeeEEe--cCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 303 ------------GNIAIWDTRVG---------KSALMSFK--AHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 303 ------------g~I~iwD~~~~---------~~~~~~~~--~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
..|.-|.+... ...+..+. ........|.|.|++ .++++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 13444555421 11222222 222346899999999 666655543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.69 E-value=8.6 Score=35.88 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC------cEEEEECCCCC
Q 039302 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN------QLTIWDLSLEK 405 (479)
Q Consensus 348 ~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg------~I~iwdl~~~~ 405 (479)
.+.+||+.+.. +..+..+......-.++.+ ++.+++.||.++ .|.+++++..+
T Consensus 286 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 286 STDIHLWHNGK--WDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CCEEEECC-----CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEEEecCCCc--eeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 57899998765 3344444332222233333 347888888653 35555777664
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=82.99 E-value=45 Score=34.57 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCCCeEEEEeCCC--eEEEEecCCCCccccCCCC--cccCCCcEEEEEECCCCCcEEEEEeC--C-----CcEEEEEcCC
Q 039302 244 VAPGRLVSGDCNS--CIHLWEPASDATWNVDPNP--FIGHAASVEDLQWSPTESDVFASCSV--D-----GNIAIWDTRV 312 (479)
Q Consensus 244 ~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~~l~s~s~--d-----g~I~iwD~~~ 312 (479)
++. +++.|+.++ .+.+||+.+ ..|...... ..........+.+......+++.|+. + ..+.+||+.+
T Consensus 500 ~~~-iyv~GG~~~~~~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 500 DGN-VLILGGVTEGPAMLLYNVTE-EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TSC-EEEECCBCSSCSEEEEETTT-TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred CCE-EEEECCCCCCCCEEEEECCC-CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 454 777777655 689999876 345432210 11111112234455552337777775 2 3588999987
Q ss_pred CCc--e--eeEEec----CCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCC
Q 039302 313 GKS--A--LMSFKA----HNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLK 358 (479)
Q Consensus 313 ~~~--~--~~~~~~----h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr~~~ 358 (479)
..- . ...+.. ......++.+. ++ .+++.||.+ ..|.+||+.+..
T Consensus 578 ~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 578 ENATEPITVIKKLQHPLFQRYGSQIKYIT-PR-KLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TCSSCCEEEEEEEECGGGCCBSCEEEEEE-TT-EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CccccceEEEEcCCCCCCCcccceEEEeC-CC-EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 651 0 111111 11122333333 24 677777743 457888887654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=82.08 E-value=35 Score=32.26 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=77.1
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCC----eEEEEecCCCCccccCCCC--ccc--------CCCcEEEEEECCCC-CcEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNS----CIHLWEPASDATWNVDPNP--FIG--------HAASVEDLQWSPTE-SDVFA 297 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg----~I~lwd~~~~~~~~~~~~~--~~~--------h~~~V~~l~~sp~~-~~~l~ 297 (479)
...|.+|++.|...+.|..+...| .|...+ ..+..|...... +.. ....|.+|++.|.+ ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 347999999985444566666555 444332 233344322111 111 12358889998743 22455
Q ss_pred EEeCCCcEEEEEcCCCCceeeEEe-------------------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 298 SCSVDGNIAIWDTRVGKSALMSFK-------------------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 298 s~s~dg~I~iwD~~~~~~~~~~~~-------------------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
+++..+.|...+- .++ .-..+. .....+.+|.++|..+..|..+..++.|...+-. ++
T Consensus 133 ~g~~~ggl~~S~D-gG~-tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~ 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTD-HGA-SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT 209 (394)
T ss_dssp EEEETTEEEEESS-TTS-BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS
T ss_pred EEecCCcEEEEcC-CCC-CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC
Confidence 5554555444322 121 111111 1123578999998543444445444444443221 11
Q ss_pred CCCceEEE-eec-C--------CCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 359 GGDSVVAH-FEY-H--------KHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 359 ~~~~~~~~-~~~-h--------~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
. ...+.. ... + ...+.+|.++|.++..|..++..+ |..
T Consensus 210 t-W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 210 D-WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp S-CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred C-ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 0 111100 000 0 124889999997656677666544 443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.02 E-value=14 Score=34.46 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=33.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCC--CC-----EEEEEEc---C-CCCcEEEEEeCCCeEEEEe
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHN--AD-----VNVISWN---R-LASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~--~~-----v~~l~~~---p-~~~~~l~sgs~dg~i~iwD 353 (479)
.+++|+.+|.+.-.|+++++ .+..+.... .. ..|.... . ..+..|+.|..+..+.+.+
T Consensus 113 ~Vy~Gs~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 113 KVYTGSMRTIMYTINMLNGE-IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp EEEECEEEEEEEEEETTTCC-EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred EEEEEecCCEEEEEECCCCc-EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 78899999999999999996 455543211 10 1111111 0 1124677777777777766
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=80.58 E-value=61 Score=34.13 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=79.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CCCceEEEEeCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HKDEGYAIDWNPV 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~s~~ 244 (479)
.+.|.+|.++|.++.++..++..|.|...+=.. . ..+++..... ....+.+|++.|.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG--~-----------------tW~~~~~~~~~~~~~~~~i~~ia~dp~ 74 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT--S-----------------KWIPLNDFIEAQDMNIMGTESIALDPN 74 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--T-----------------EEEESCTTCCGGGGGGCSEEEEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC--C-----------------CeeECccCCCcccccCCceeEEEECCC
Confidence 468999999998766666667777665443211 0 0111110000 1246899999986
Q ss_pred CCCeEEEEeCCCe----EEEEecCC-CCccccCCCCcc--c---CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 245 APGRLVSGDCNSC----IHLWEPAS-DATWNVDPNPFI--G---HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 245 ~~~~l~sg~~dg~----I~lwd~~~-~~~~~~~~~~~~--~---h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.++.++.+..... -.||.... +..|......+. + ....+..|+++|.....+..+...+. ||-...+.
T Consensus 75 ~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG 152 (789)
T 1sqj_A 75 NPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRA 152 (789)
T ss_dssp EEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTT
T ss_pred CCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCC
Confidence 5545555543211 33444333 334433211111 0 01135678888876556666653443 33333321
Q ss_pred ceeeEEe------cCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 315 SALMSFK------AHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 315 ~~~~~~~------~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
..-..+. .....+..|.++|..+..|.++..+
T Consensus 153 ~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 153 KTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp SSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1111111 1124688999998665555555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 479 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.9 bits (185), Expect = 7e-16
Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 23/248 (9%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
++ I +V + + + + +V +
Sbjct: 78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPAS---------------DATWNVD 272
F GH++ + N + S + + +W A+ +W +
Sbjct: 138 TFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 273 PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW 332
+ A+ + + S S S D I +WD G LM+ H+ V + +
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLF 255
Query: 333 NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392
+ + S +DD T + D + + H+H VTS+++ + S
Sbjct: 256 HS-GGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSV 309
Query: 393 DNQLTIWD 400
D + +W+
Sbjct: 310 DQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.3 bits (147), Expect = 5e-11
Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 9/192 (4%)
Query: 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVL 221
++ R+ +Q+ + AS ++ V+VW + E
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194
Query: 222 NQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA 281
+S G + L+SG + I +W+ ++ +GH
Sbjct: 195 PESSYSSISEAT--GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----LVGHDN 248
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLA 341
V + + SC+ D + +WD + + + + AH V + +++ + +
Sbjct: 249 WVRGVLFHS-GGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHK-TAPYVV 305
Query: 342 SGSDDGTFSIHD 353
+GS D T + +
Sbjct: 306 TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.5 bits (145), Expect = 1e-10
Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 43/271 (15%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWD---------FRSHLNALAESETVAGHGA 217
H+ V R+ + S ++ ++VWD + H +++ +
Sbjct: 15 GHRSPVTRV-IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 218 PQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP---- 273
+ +K + + + H+ + D T +
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 274 ---NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330
F GH V ++ + + + ASCS D + +W + + H V I
Sbjct: 134 YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECI 191
Query: 331 SWNRLASC-------------------LLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK 371
SW +S L SGS D T + D+ + H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHD 247
Query: 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
+ V + + G + + D L +WD
Sbjct: 248 NWVRGVLFHSG-GKFILSCADDKTLRVWDYK 277
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 13/178 (7%)
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVE 284
GH+ + ++PV +VS ++ I +W+ + GH SV+
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT----LKGHTDSVQ 63
Query: 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS 344
D+ + + + + + M HN I N + S S
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN---GDHIVSAS 120
Query: 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
D T + +++ V F H+ V + + +G+ +A S D + +W ++
Sbjct: 121 RDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVA 173
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 6e-15
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 12/152 (7%)
Query: 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI-W 308
VSG C++ LW D + F GH + + + + P + FA+ S D +
Sbjct: 200 VSGACDASAKLW----DVREGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFD 254
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
+ S + +S+++ + LL +G DD ++ D
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKAD----RAGVLA 309
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
H + V+ + + G +A S D+ L IW+
Sbjct: 310 GHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.1 bits (149), Expect = 4e-11
Identities = 45/288 (15%), Positives = 87/288 (30%), Gaps = 26/288 (9%)
Query: 135 EDADGESSDSDDDSDDEEEGGSGTPILQLRKV--AHQGCVNRIRAMSQNPHICASWADTG 192
DA +D+ G ++ R+ H + + + + S + G
Sbjct: 19 RDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM-HWGTDSRLLVSASQDG 77
Query: 193 HVQVWDFRSH------------LNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240
+ +WD + + A + + + N + +
Sbjct: 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
Query: 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS------PTESD 294
G L + + D T + + ++
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354
+F S + D + +WD R G +F H +D+N I + A+GSDD T + DL
Sbjct: 198 LFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
Query: 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
R + + + +TS+ +S G L D +WD
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDAL 300
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 28/154 (18%)
Query: 156 SGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGH 215
G H+ +N I N + A+ +D +++D R+
Sbjct: 215 EGMCRQTFT--GHESDINAI-CFFPNGNAFATGSDDATCRLFDLRAD------------- 258
Query: 216 GAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNP 275
+ ++ ++ L++G + ++W+ V
Sbjct: 259 ------QELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGV---- 307
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
GH V L + + A+ S D + IW+
Sbjct: 308 LAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.7 bits (166), Expect = 3e-13
Identities = 28/189 (14%), Positives = 67/189 (35%), Gaps = 25/189 (13%)
Query: 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPAS---DATWNVDPNPFIGHAASVEDLQW 288
+D + +P + +G + + +W+ + + + GH SV + +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262
Query: 289 SPTESDVFASCSVDGNIAIWDTRVGKSA-----------LMSFKAHNADVNVISWNRLAS 337
+ + S S+D ++ +W+ + + +++ H V ++ +
Sbjct: 263 TR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-ND 320
Query: 338 CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH-----EGSTLAVSSA 392
+ SGS D D + + + H++ V S+ + E + A S
Sbjct: 321 EYILSGSKDRGVLFWDKKSGN----PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 376
Query: 393 DNQLTIWDL 401
D + IW
Sbjct: 377 DCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 8e-11
Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 30/201 (14%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
+ V + + A+ + V+VWD + G S
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENE 248
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPAS--------DATWNVDPNPFIGH 279
GHKD Y++ + +VSG + + LW + +IGH
Sbjct: 249 SGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC- 338
V + + + S S D + WD + G L+ + H V ++ +S
Sbjct: 308 KDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLG 365
Query: 339 ----LLASGSDDGTFSIHDLR 355
+ A+GS D I +
Sbjct: 366 PEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 40/294 (13%), Positives = 81/294 (27%), Gaps = 57/294 (19%)
Query: 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAP 218
+ + + H V + S + A+ + QV+ S+ A + P
Sbjct: 52 DVELHKSLDHTSVVCCV-KFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDP 109
Query: 219 QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG 278
+ LN S ++ ++P + + +
Sbjct: 110 ENLNTSSS---PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166
Query: 279 HA------------------------------------ASVEDLQWSPTESDVFASCSVD 302
++ V + SP + A+ S+D
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 226
Query: 303 GNIAIWDTRVGK------SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356
+ +WD+ G S S H V + + R + SGS D + + +L+
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN 285
Query: 357 LKG--------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
+ + HK V S+ + + + S D + WD
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKK 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 5e-06
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 20/150 (13%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226
H+ V + +++ S + V++W+ ++ N + + +
Sbjct: 252 GHKDSVYSV-VFTRDGQSVVSGSLDRSVKLWNLQNANNK---------SDSKTPNSGTCE 301
Query: 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDL 286
V + GHKD ++ ++SG + + W+ S + GH SV +
Sbjct: 302 VTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLM----LQGHRNSVISV 356
Query: 287 QWSPTES-----DVFASCSVDGNIAIWDTR 311
+ S +VFA+ S D IW +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)
Query: 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVF 296
+ +D + + + N L+ PA +V+ + + H + V +++S +
Sbjct: 19 FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND-GEYL 77
Query: 297 ASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356
A+ + ++ G A+ + + N +S FS L
Sbjct: 78 ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136
Query: 357 LKGGDSVVAHFEYHKHPVTSIEWSPH 382
G + + ++ + H
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGH 162
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 6e-11
Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 17/242 (7%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
+R C V + + ++ L
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
GH + Y++ ++ + +VSG ++ I +W D + GH + ++
Sbjct: 172 TLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVW----DVETGNCIHTLTGHQSLTSGME 224
Query: 288 WSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG 347
++ S + D + IWD + G+ L + + N + ++ + + + SDDG
Sbjct: 225 LKD---NILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 280
Query: 348 TFSIHDLRLLKGGDSVVA-HFEYHKHPVTSIEWSPHEGSTLAVSSADN----QLTIWDLS 402
T + DL+ + ++V V I S AV S + +L + D
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFD 339
Query: 403 LE 404
++
Sbjct: 340 VD 341
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 33/251 (13%), Positives = 64/251 (25%), Gaps = 46/251 (18%)
Query: 155 GSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAG 214
G L+ H V I + + S +D ++VW +
Sbjct: 4 GELKSPKVLK--GHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVT------------- 46
Query: 215 HGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPN 274
L GH ++ + + +A +
Sbjct: 47 --------GKCLRTLVGHTGGVWSSQMRD-------NIIISGSTDRTLKVWNAETGECIH 91
Query: 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNR 334
GH ++V + S S D + +WD G+ V + +
Sbjct: 92 TLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQC----LHVLMGHVAAVRCVQ 144
Query: 335 LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394
+ SG+ D + D ++ H +G + S D
Sbjct: 145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-------SLQFDGIHVVSGSLDT 197
Query: 395 QLTIWDLSLEK 405
+ +WD+
Sbjct: 198 SIRVWDVETGN 208
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 1e-08
Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 5/166 (3%)
Query: 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVF 296
WN ++ N +H++E + + V H V + W+P S+
Sbjct: 11 SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE--LKEHNGQVTGVDWAPD-SNRI 66
Query: 297 ASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356
+C D N +W + A GS SI
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126
Query: 357 LKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
+ + V S++W P+ LA S D + I+
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAY 171
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 29/234 (12%), Positives = 63/234 (26%), Gaps = 25/234 (10%)
Query: 178 MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237
N + A+ + +++ E ++ + + +
Sbjct: 149 WHPNSVLLAAGSCDFKCRIFSAYIKE---VEERPAPTPWGSKMPFGELMFESSSSCGWVH 205
Query: 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFA 297
+ ++ + + L DA + + + + ES + A
Sbjct: 206 GVCFSANGSRVAWVSHDS-TVCLA----DADKKMAVATLASETLPLLAVTFIT-ESSLVA 259
Query: 298 SCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357
+ D ++ L SF S + F D +
Sbjct: 260 AGH-DCFPVLFTYDSAAGKL-SFGGRLDVPKQSSQ--------RGLTARERFQNLDKKAS 309
Query: 358 KGGDSV--VAHFEYHKHPVTSIEWSP---HEGSTLAVSSADNQLTIWDL-SLEK 405
G + HK+ V+ I + S + D ++IWD+ SLE
Sbjct: 310 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 7e-04
Identities = 27/172 (15%), Positives = 49/172 (28%), Gaps = 20/172 (11%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
G V+ + S N A + V + D + + A + +S LV
Sbjct: 200 SCGWVHGV-CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV 258
Query: 228 KFGGHKDEGYAIDWNP-------------VAPGRLVSGDCNSCIHLWEPASDATWNVDPN 274
GH ++ + + + +
Sbjct: 259 -AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 317
Query: 275 PFI--GHAASVEDLQWSP---TESDVFASCSVDGNIAIWDTRVGKSALMSFK 321
+ H SV + + F + +DG ++IWD R +SAL K
Sbjct: 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.001
Identities = 6/38 (15%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
A+ + P++ W+ + + +A+ ++++ I++ S
Sbjct: 1 AYHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKS 37
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.9 bits (86), Expect = 0.002
Identities = 30/219 (13%), Positives = 55/219 (25%), Gaps = 27/219 (12%)
Query: 168 HQGCVNRIRAMSQNP--HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP 225
H V I + N A + V +++ +
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-------------------KWVQ 43
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
+ + H + +DW P R+V+ + ++W P I
Sbjct: 44 VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTL---KGRTWKPTLVILRINRAAR 99
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVIS--WNRLASCLLASG 343
FA S I+I + + + S LLA+G
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 344 SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382
S D I + + + K P + +
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 1e-08
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 40/204 (19%)
Query: 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF--------IGHAAS 282
H + +++ VS + + +W+ N + + H
Sbjct: 12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 283 VEDLQWSPTESDVFASCSVDGNIAIWDTRVG---------KSALMSFKAHNADVNVISW- 332
++ ++ E + A+ S G++ + K L+ + W
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 333 ---NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH--------------FEYHKHPVT 375
+RL S L + GT I + + T
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188
Query: 376 SIEWSPHEGSTLAVSSADNQLTIW 399
S++ S +A + + I
Sbjct: 189 SVDISER--GLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP----- 373
+ KAH+AD+ +S + S S DG + D +LL + + + H
Sbjct: 9 AGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 374 ---VTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
+ +IE E +A +S L + ++
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 39/261 (14%), Positives = 83/261 (31%), Gaps = 40/261 (15%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226
AH I ++S S + G+++VWD + N + ++ + L+
Sbjct: 12 AHDA---DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH---- 64
Query: 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA------TWNVDPNPFIGHA 280
H D AI+ + + + + + + + +D
Sbjct: 65 -----HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119
Query: 281 ASVEDLQWSPTES----DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA 336
S L+W + + V G IW S + + + +
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Query: 337 SC---------------LLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYHKHPVTSIEW 379
L+A+G ++GT I +L L+ + + + + + S+++
Sbjct: 180 PMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 380 SPHEGSTLAVSSADNQLTIWD 400
SP S LA++ N
Sbjct: 240 SPQG-SLLAIAHDSNSFGCIT 259
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 6e-04
Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 19/147 (12%)
Query: 253 DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312
+ + + + H++ V L ++ + + S DG + WD +
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKT 320
Query: 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH 372
+ + + H D+ + S ++ G F + L+ KG S +
Sbjct: 321 KE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK--KGWRSGMGA------ 371
Query: 373 PVTSIEWSPHEGSTLAVSSADNQLTIW 399
+L D + +
Sbjct: 372 ---------DLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.001
Identities = 36/272 (13%), Positives = 79/272 (29%), Gaps = 50/272 (18%)
Query: 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP 225
+ H + I + + A+ + +G + + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR-----------EDETKKVIFEKLD 111
Query: 226 LVKFGGHKDEGYAIDWNP----VAPGRLVSGDCNSCIHLWEPASDATWNV---------- 271
L+ K +A+ W + RLV+ D ++W+ A +
Sbjct: 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 171
Query: 272 ----DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD-----TRVGKSALMSFKA 322
+ + + S + A+ +G + I + + S
Sbjct: 172 ELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 323 HNADVNVISWNRLASCLLASGSDDGTFS------------IHDLRLLKGGDSVVAHFEYH 370
++ + + ++ LLA D +F I L + H
Sbjct: 230 NSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288
Query: 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
V S+ ++ G TL + D +L WD+
Sbjct: 289 SSWVMSLSFNDS-GETLCSAGWDGKLRFWDVK 319
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 16/156 (10%)
Query: 254 CNSCIHLWEPASDAT---WNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
++ + D T WN F+ + + S S D I +WD
Sbjct: 145 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 204
Query: 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR-----LLKGGDSVV 364
G + ++ R + + SG+ DG + DL G +
Sbjct: 205 IECGAC----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260
Query: 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
H V +++ + SS D+ + IWD
Sbjct: 261 RTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 6e-06
Identities = 27/179 (15%), Positives = 46/179 (25%), Gaps = 37/179 (20%)
Query: 136 DADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQ 195
D S S D + + + L G I + + S + ++
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSDNTIR 201
Query: 196 VWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255
+WD + + R+VSG +
Sbjct: 202 LWDIECG------------------------ACLRVLEGHEELVRCIRFDNKRIVSGAYD 237
Query: 256 SCIHLWEPASDATWNVDPNP-----FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
I +W+ + + H+ V LQ+ S S D I IWD
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 6e-04
Identities = 27/241 (11%), Positives = 63/241 (26%), Gaps = 40/241 (16%)
Query: 163 LRKV-AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVL 221
L+++ + + + S +++WD +
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT-------------------- 44
Query: 222 NQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA 281
GH + ++ S + T
Sbjct: 45 -LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV----- 98
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLA 341
+ + +CS D +IA+WD + + ++ +
Sbjct: 99 -----LHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDDKYIV 152
Query: 342 SGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
S S D T + + + V HK + +++ + S+DN + +WD+
Sbjct: 153 SASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDI 205
Query: 402 S 402
Sbjct: 206 E 206
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 23/187 (12%), Positives = 54/187 (28%), Gaps = 10/187 (5%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
N N + + S+ + + L + +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
+ + +++ + P V + ++ L D H + V L+
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH------VNKPDKYQLHLHESCVLSLK 272
Query: 288 WSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG 347
++ F S D + W T G S S ++ V + + +GS D
Sbjct: 273 FAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISV-DDKYIVTGSGDK 328
Query: 348 TFSIHDL 354
+++++
Sbjct: 329 KATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 24/269 (8%), Positives = 63/269 (23%), Gaps = 28/269 (10%)
Query: 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAES 209
D G+ +P+ QL + + + + + + +WD + +
Sbjct: 78 DISHPGNKSPVSQLDCLNRDNYIRSC-KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136
Query: 210 ETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW 269
T + + +G W+ + ++ S+
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 270 NVD-----------------PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312
+ + + L + PT + + +
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH 372
K L ++ + + S D +
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKW----FVSTGKDNLLNAWRTP-----YGASIFQSKESS 307
Query: 373 PVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
V S + S + S D + T++++
Sbjct: 308 SVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 16/167 (9%)
Query: 249 LVSGDCNSCIHLWEPAS---DATWNVDPNPFIGHAASVEDLQWSPTESDVFAS--CSVDG 303
L S + P S + P A D
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252
Query: 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC--LLASGSDDGTFSIHDLRLLKGGD 361
V + + + S + G +D++ K
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--- 309
Query: 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEE 408
K+ +T + S + T+ V D ++ + L +DE
Sbjct: 310 -----VTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDER 350
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.6 bits (114), Expect = 9e-07
Identities = 23/254 (9%), Positives = 54/254 (21%), Gaps = 26/254 (10%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226
H + + ++ + A D V + +
Sbjct: 76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135
Query: 227 VKFGGHKDEGYAIDWNPVAPGRLV-SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
G L +G + + + G++A
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195
Query: 286 LQWSPTESD-----------------VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328
W A+ + D + GK+ F
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255
Query: 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388
+ + + + +DL+ K + H + + +G L
Sbjct: 256 TGLRSPKDPNQIYGVLN--RLAKYDLKQRK-----LIKAANLDHTYYCVAFDK-KGDKLY 307
Query: 389 VSSADNQLTIWDLS 402
+ N L +++
Sbjct: 308 LGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 15/156 (9%), Positives = 41/156 (26%), Gaps = 8/156 (5%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
++ + + +H+ + ASD + + +P + + G+I
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASC----LLASGSDDGTFSIHDLRLLKGGDSVV 364
D K+ + + S A + + + + V
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127
Query: 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
+ + + L ++ D L +
Sbjct: 128 STADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAG 162
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 1e-06
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 3/101 (2%)
Query: 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313
N F H ++ + ++ S S + I++ R G
Sbjct: 255 FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 313
Query: 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354
K + + +++ L+A+ DG + L
Sbjct: 314 KLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 8e-06
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Query: 278 GHAASVED-LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA 336
GH SV LQ+ + + + D I ++D+ K L+ H+ V + +
Sbjct: 10 GHMTSVITCLQFED---NYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAH-- 63
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396
+L SGS D T + D++ G ++ + S DN L
Sbjct: 64 GGILVSGSTDRTVRVWDIK---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 397 TIWDLSLEK 405
+W L E
Sbjct: 121 HVWKLPKES 129
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 5e-05
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 7/151 (4%)
Query: 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-NIAIWDTRV 312
+ + D T + +++ + V
Sbjct: 210 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 269
Query: 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH 372
F H+ +++ I+ ++ +L SGS+ F+I++LR G V A+
Sbjct: 270 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLR---SGKLVHANILKDAD 325
Query: 373 PVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403
+ S+ + + +A D Q + L
Sbjct: 326 QIWSVNFKG--KTLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 28/172 (16%)
Query: 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227
H V I + + + AD ++V+D +N+ L+
Sbjct: 11 HMTSV--ITCLQFEDNYVITGADDKMIRVYD---------------------SINKKFLL 47
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
+ GH +A+ + G LVSG + + +W+ +V
Sbjct: 48 QLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV---RCLDI 102
Query: 288 WSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCL 339
+ S D + +W S + H+ + + +
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 10/156 (6%)
Query: 231 GHKDEGY-AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS 289
GH + + +++G + I +++ + GH V L+++
Sbjct: 10 GHMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQ----LSGHDGGVWALKYA 62
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTF 349
+ S S D + +WD + G + ++ + + +GS D T
Sbjct: 63 H--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385
+ L +Y T E G
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 8/77 (10%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWNRL 335
+ D++ P+ + S DG++ ++ + L+ + + ++
Sbjct: 9 APKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 336 ASCLLASGSDDGTFSIH 352
+ G+ G
Sbjct: 68 TDLQIYVGTVQGEILKV 84
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 3e-06
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379
+A ++ I + LL S DG+ +++ + ++ +KHP+ +
Sbjct: 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNF 64
Query: 380 SPHEGSTLAVSSADNQLTIW 399
+ + V + ++
Sbjct: 65 IDNTDLQIYVGTVQGEILKV 84
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.001
Identities = 26/243 (10%), Positives = 60/243 (24%), Gaps = 21/243 (8%)
Query: 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQ 219
I+Q+ + A + ++ I+ + + + D G + V+ F
Sbjct: 3 IVQIEQ-APKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAK--------------- 45
Query: 220 VLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH 279
L++ +K ++ ++ G I + ++ N
Sbjct: 46 ---NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL 102
Query: 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCL 339
++ + + N I S
Sbjct: 103 GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162
Query: 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
L G ++ L L + + + P E A SS D ++ +
Sbjct: 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLPKEQEGYACSSIDGRVAVE 221
Query: 400 DLS 402
Sbjct: 222 FFD 224
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.001
Identities = 26/189 (13%), Positives = 56/189 (29%), Gaps = 22/189 (11%)
Query: 230 GGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS 289
+ I RL+ G NS + + N +
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV-ALL 202
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKS--------------ALMSFKAHNADVNVISWNRL 335
P E + +A S+DG +A+ + VN I ++
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP- 261
Query: 336 ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395
L + DG S +L+ K + +F + + ++ + + L ++++D+
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRK----KIKNFAKF-NEDSVVKIACS-DNILCLATSDDT 315
Query: 396 LTIWDLSLE 404
+
Sbjct: 316 FKTNAAIDQ 324
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.002
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 370 HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405
K ++ I+ P S L ++S D LT++ ++
Sbjct: 10 PKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQA 44
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 5e-06
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 2/100 (2%)
Query: 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313
S + I + + E D+ A+ S+D NI I+ +
Sbjct: 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247
Query: 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353
+ + AH VN + W L S D +
Sbjct: 248 MKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 1e-05
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377
++ + + + L+A+GS D I+ ++ ++ HK V ++
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK---RPMKIIKALNAHKDGVNNL 264
Query: 378 EWSPHEGSTLAVSSADNQLTIWD 400
W STL S AD + W+
Sbjct: 265 LWET--PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.003
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333
GH + L +P S S DG I W + + H+ + + +
Sbjct: 9 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNS 55
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.9 bits (83), Expect = 0.004
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376
L + HN + ++ N L SGS DG + H + + S
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD---------HSNLIVS 51
Query: 377 IEWSPH 382
++ S
Sbjct: 52 LDNSKA 57
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 6e-06
Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 7/173 (4%)
Query: 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT 291
+ + + ++ ++ + V D+++SP
Sbjct: 157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 216
Query: 292 ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW-NRLASCLLASGSDDGTFS 350
+ + D I+ +D + G+ I + L S A+ D T
Sbjct: 217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276
Query: 351 IHDLRLLKGGDSVVAHFEYHKHPV--TSIEWSPHEGSTLAVSSADNQLTIWDL 401
+ D+ V + K + + + S D L ++L
Sbjct: 277 VWDVT----TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 7e-04
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 281 ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKAHNAD-VNVISWNRLAS- 337
L + PT + + C + D K ++ F H + V + ++ +
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 338 CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----HKHPVTSIEWSPH 382
L SG + G + K +SV + + P++ I W
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 1e-05
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333
GH ++ L S + S +G+I WD G S + H + I
Sbjct: 10 GHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 7e-05
Identities = 19/149 (12%), Positives = 47/149 (31%), Gaps = 3/149 (2%)
Query: 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313
+ +V I H A + + +S + + A+ I
Sbjct: 153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 212
Query: 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373
+ A + + + LA+GS D + + ++ ++ +
Sbjct: 213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-AHAMSS 271
Query: 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
V S+ W +T+ + D+ + W++
Sbjct: 272 VNSVIWLN--ETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.3 bits (84), Expect = 0.003
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
S+ H +T++ S +G TL + A+ + WD+S
Sbjct: 3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIS 42
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 1/104 (0%)
Query: 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310
GD ++ + D + + + AS S D I IW+
Sbjct: 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267
Query: 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354
K + + L S S +G + +
Sbjct: 268 ATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.1 bits (89), Expect = 8e-04
Identities = 22/153 (14%), Positives = 40/153 (26%), Gaps = 9/153 (5%)
Query: 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313
S A G + +FAS DG I +++ G
Sbjct: 162 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 221
Query: 314 KSALMSFKAHNADVNVISWNRLASC-----LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
+ +V + +AS S D T I ++ LK ++
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-- 279
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
+ + L SA+ + +
Sbjct: 280 -TRIEDQQLGIIWT-KQALVSISANGFINFVNP 310
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (96), Expect = 2e-04
Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 9/175 (5%)
Query: 267 ATWNVDPNPFIGHAASVEDLQWSPTESDVFA-SCSVDGNIAIWDTRVGKSALMSFKAHNA 325
+W V P ++F+ + G IA+ D + A
Sbjct: 9 ESWKVHVAP----EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE-IKTVLDTGYA 63
Query: 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG-GDSVVAHFEYHKHPVTSIEWSPHEG 384
V++ + L DG ++ DL + + + + + TS +
Sbjct: 64 -VHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 385 STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK 439
+A + Q I D + ++ ++ EQ PE +L H +
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 14/140 (10%), Positives = 33/140 (23%), Gaps = 6/140 (4%)
Query: 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE 235
A SQ TG + D S + + + +
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259
Query: 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-ESD 294
I + + + + + ++ + S +
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-----FEMGHEIDSINVSQDEKPL 314
Query: 295 VFASCSVDGNIAIWDTRVGK 314
++A + D + I D G+
Sbjct: 315 LYALSTGDKTLYIHDAESGE 334
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 24/236 (10%), Positives = 57/236 (24%), Gaps = 14/236 (5%)
Query: 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP 225
A + + + + +V + + + ++ +
Sbjct: 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
+G +D + + +P A WN + +
Sbjct: 147 SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY-AQPDVLAVWNQHESSGVMATPFY-- 203
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ + D + + D G+ A+ + + + N +
Sbjct: 204 --TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP---AKTRAFGA 258
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
DL H S+ S +GST+ + A L +D
Sbjct: 259 YNVLESFDLEKNA-----SIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDA 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.76 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.71 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.6 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.6 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.5 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.47 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.47 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.25 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.24 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.24 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.12 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.11 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.02 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.99 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.97 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.97 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.94 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.83 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.83 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.82 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.63 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.63 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.59 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.55 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.41 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.36 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.18 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.14 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.08 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.06 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.98 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.57 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.46 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.43 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.08 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.75 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.52 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.07 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.14 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.1 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.63 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.88 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.33 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.28 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.03 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 88.02 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 87.35 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.64 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 84.88 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 84.77 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 83.4 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.03 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 82.77 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 80.32 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-35 Score=283.64 Aligned_cols=292 Identities=14% Similarity=0.237 Sum_probs=236.7
Q ss_pred hhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCC
Q 039302 63 SLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESS 142 (479)
Q Consensus 63 ~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (479)
.+|.....-+..++.|-|+. .+|++|. ++.|.||++....
T Consensus 44 ~~~~~~H~~~V~~v~fs~~g-----------~~latg~------dg~V~iWd~~~~~----------------------- 83 (337)
T d1gxra_ 44 QINTLNHGEVVCAVTISNPT-----------RHVYTGG------KGCVKVWDISHPG----------------------- 83 (337)
T ss_dssp EEEEECCSSCCCEEEECSSS-----------SEEEEEC------BSEEEEEETTSTT-----------------------
T ss_pred EEEECCCCCcEEEEEECCCC-----------CEEEEEE------CCEEEEEEccCCc-----------------------
Confidence 34555556677788888873 3577762 5689999884210
Q ss_pred CCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCcccc
Q 039302 143 DSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLN 222 (479)
Q Consensus 143 ~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479)
...+.......+|.+.|++++|+|++ .+|++|+.||.|++||+... .
T Consensus 84 -------------~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~-------------------~ 130 (337)
T d1gxra_ 84 -------------NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP-------------------T 130 (337)
T ss_dssp -------------CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--------------------
T ss_pred -------------ccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeeccccccccccccc-------------------c
Confidence 02445555677899999999999999 78889999999999998762 1
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
......+.+|...+.+++|+|++. +|++++.++.|++|++.+.... ....+|...|.+++|++++. .+++|+.|
T Consensus 131 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~----~~~~~~~~~v~~l~~s~~~~-~~~~~~~d 204 (337)
T d1gxra_ 131 PRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLV----RQFQGHTDGASCIDISNDGT-KLWTGGLD 204 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE----EEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccc----cccccccccccccccccccc-cccccccc
Confidence 344567788999999999999997 9999999999999999875432 34667899999999999998 99999999
Q ss_pred CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 303 GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 303 g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
|.|++||+++++ .+. ...|...|++++|+|++ .+|++|+.||.|++||++... ......|...|++++|+|+
T Consensus 205 ~~v~i~d~~~~~-~~~-~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~v~~s~~ 276 (337)
T d1gxra_ 205 NTVRSWDLREGR-QLQ-QHDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYC 276 (337)
T ss_dssp SEEEEEETTTTE-EEE-EEECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTT
T ss_pred ccccccccccce-eec-ccccccceEEEEEcccc-cccceeccccccccccccccc-----cccccccccccceEEECCC
Confidence 999999999875 443 34588899999999998 899999999999999999876 3456789999999999996
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+ .+|++++.||.|++||+.... .+....+...|++++|+|++. +|++++.|+
T Consensus 277 g-~~l~s~s~Dg~i~iwd~~~~~-------------------------~~~~~~~~~~v~~~~~s~d~~-~l~t~s~D~~ 329 (337)
T d1gxra_ 277 G-KWFVSTGKDNLLNAWRTPYGA-------------------------SIFQSKESSSVLSCDISVDDK-YIVTGSGDKK 329 (337)
T ss_dssp S-SEEEEEETTSEEEEEETTTCC-------------------------EEEEEECSSCEEEEEECTTSC-EEEEEETTSC
T ss_pred C-CEEEEEeCCCeEEEEECCCCC-------------------------EEEEccCCCCEEEEEEeCCCC-EEEEEeCCCe
Confidence 5 899999999999999998763 233333456899999999986 677777777
Q ss_pred ceEEeee
Q 039302 462 FNILMPS 468 (479)
Q Consensus 462 i~iw~~~ 468 (479)
|+||++.
T Consensus 330 I~vWdl~ 336 (337)
T d1gxra_ 330 ATVYEVI 336 (337)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999873
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.9e-35 Score=279.72 Aligned_cols=247 Identities=22% Similarity=0.322 Sum_probs=200.8
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.|++++|+|++ .+||+|+.||+|+|||+... .......+.+|...|.+++|+|
T Consensus 53 ~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~v~~v~~s~ 112 (311)
T d1nr0a1 53 IYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT-------------------THILKTTIPVFSGPVKDISWDS 112 (311)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST-------------------TCCEEEEEECSSSCEEEEEECT
T ss_pred EEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecc-------------------ccccccccccccCccccccccc
Confidence 567999999999999998 78999999999999999872 1223356788999999999999
Q ss_pred CCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 244 VAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 244 ~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++. +|++++. +..++||++.++.. ...+.+|...|++++|+|+++.+|++|+.||.|++||+++.+ ....+.
T Consensus 113 d~~-~l~~~~~~~~~~~~v~~~~~~~~----~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~ 186 (311)
T d1nr0a1 113 ESK-RIAAVGEGRERFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFG 186 (311)
T ss_dssp TSC-EEEEEECCSSCSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEEC
T ss_pred ccc-ccccccccccccccccccccccc----cccccccccccccccccccceeeecccccccccccccccccc-cccccc
Confidence 998 8888875 45699999987544 345788999999999999998779999999999999999875 677788
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-------cCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-------YHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-------~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
.|...|+++.|+|++ .+|++|+.||.|++||++... .+..+. +|..+|++++|+|++ .+|++|+.||
T Consensus 187 ~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg 260 (311)
T d1nr0a1 187 EHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADK 260 (311)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTS
T ss_pred cccccccccccCccc-ccccccccccccccccccccc----ccccccccccccccccccccccccCCCC-CEEEEEeCCC
Confidence 999999999999998 899999999999999999876 455543 588999999999965 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.|+|||+++.+.. +.+..|... ..+.++.|+++ .|++++.|| |++|++
T Consensus 261 ~v~iwd~~t~~~~----------------------~~l~~~~~~~~~~~~~~~~~~---~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 261 TIKIWNVATLKVE----------------------KTIPVGTRIEDQQLGIIWTKQ---ALVSISANGFINFVNP 310 (311)
T ss_dssp EEEEEETTTTEEE----------------------EEEECCSSGGGCEEEEEECSS---CEEEEETTCCEEEEET
T ss_pred eEEEEECCCCcEE----------------------EEEECCCCccceEEEEEecCC---EEEEEECCCEEEEEeC
Confidence 9999999876310 122222211 13555666554 355566666 999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-34 Score=271.55 Aligned_cols=266 Identities=19% Similarity=0.300 Sum_probs=210.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccccccc--c----ccc--C----------CC---CCccc
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAES--E----TVA--G----------HG---APQVL 221 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~--~----~~~--~----------~~---~~~~~ 221 (479)
..+.+|.+.|++|+|+|++ .+||||+.||+|+|||+.+........ . ... . .. .....
T Consensus 11 ~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp CEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EEEcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 4688999999999999998 789999999999999987632110000 0 000 0 00 00001
Q ss_pred cCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 222 NQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 222 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
.......+.+|...+.++.|++++. .|++++.|+.+++|++.++... ..+.+|...+.+++|+|++. +|++++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 163 (317)
T d1vyhc1 90 GFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCV----KTFTGHREWVRMVRPNQDGT-LIASCSN 163 (317)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred ccccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceee----eEEccCCCcceeeecccCCC-EEEEEeC
Confidence 2233344556777888888888887 8999999999999999876542 44678999999999999998 9999999
Q ss_pred CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCC-------------------CcEEEEEeCCCeEEEEeCCCCCCCCc
Q 039302 302 DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA-------------------SCLLASGSDDGTFSIHDLRLLKGGDS 362 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~-------------------~~~l~sgs~dg~i~iwDlr~~~~~~~ 362 (479)
|+.|++|++++.. ....+..|...+.+++|+|.. ..++++|+.|+.|++||++++.
T Consensus 164 d~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---- 238 (317)
T d1vyhc1 164 DQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---- 238 (317)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----
T ss_pred CCeEEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc----
Confidence 9999999999885 677888999999999998864 2479999999999999999887
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCee
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLK 442 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~ 442 (479)
++..+.+|..+|++++|+|++ .+|++|+.||.|+|||+...+. ...+..|. ..|+
T Consensus 239 ~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~----------------------~~~~~~h~--~~V~ 293 (317)
T d1vyhc1 239 CLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRC----------------------MKTLNAHE--HFVT 293 (317)
T ss_dssp EEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCC----------------------CEEEECCS--SCEE
T ss_pred EEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcE----------------------EEEEcCCC--CCEE
Confidence 899999999999999999965 8999999999999999987631 12333333 5799
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+++|+|+++ +|++++.|| |+||+
T Consensus 294 ~~~~s~~~~-~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 294 SLDFHKTAP-YVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECSSSS-CEEEEETTSEEEEEC
T ss_pred EEEEcCCCC-EEEEEeCCCeEEEeC
Confidence 999999986 677788888 99996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.5e-34 Score=273.00 Aligned_cols=249 Identities=18% Similarity=0.271 Sum_probs=206.9
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++|+|+|++ .+||||+.||+|+|||+.+ .+.+..+.+|...|.+++
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~---------------------~~~~~~~~~~~~~v~~v~ 104 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYT---------------------TNKVHAIPLRSSWVMTCA 104 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------TEEEEEEECSCSCEEEEE
T ss_pred eeEEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeeccc---------------------ceeEEEEecccccEEeeE
Confidence 345688999999999999998 7899999999999999987 667788999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCC-----------------------------------------CCcccC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP-----------------------------------------NPFIGH 279 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~-----------------------------------------~~~~~h 279 (479)
|+|++. +|++|+.|+.|++|+........... .....+
T Consensus 105 ~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (340)
T d1tbga_ 105 YAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp ECTTSS-EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred eeccce-eeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999998 99999999999999976532110000 001134
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~ 359 (479)
...+..+.+.+.+. ++++|+.|+.|++||+++++ ++..+.+|...|++++|+|++ .+|++|+.||.|++||++...
T Consensus 184 ~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~- 259 (340)
T d1tbga_ 184 TGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ- 259 (340)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-
T ss_pred ceeEeeeccccccc-eeEEeecCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccc-
Confidence 55677888888887 99999999999999999885 778889999999999999998 899999999999999999877
Q ss_pred CCceEEEe--ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC
Q 039302 360 GDSVVAHF--EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG 437 (479)
Q Consensus 360 ~~~~~~~~--~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g 437 (479)
.+..+ ..|..+|++++|+|++ .+|++|+.||.|+|||+.... .+....+
T Consensus 260 ---~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~-------------------------~~~~~~~ 310 (340)
T d1tbga_ 260 ---ELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD-------------------------RAGVLAG 310 (340)
T ss_dssp ---EEEEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCC-------------------------EEEEECC
T ss_pred ---cccccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCc-------------------------EEEEEcC
Confidence 55544 4567789999999965 999999999999999998763 3333344
Q ss_pred C-CCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 438 Q-KDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 438 ~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
| ..|++++|+|++. +|++++.|| |+||+
T Consensus 311 H~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 311 HDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEeCCCC-EEEEEccCCEEEEeC
Confidence 3 4799999999986 677788887 99995
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1e-33 Score=276.54 Aligned_cols=284 Identities=14% Similarity=0.219 Sum_probs=209.5
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+.+|.+.|++|+|+|++ .+|++|+.|++|+|||+... ...+...+.+|...|+++
T Consensus 42 ~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~-------------------~~~~~~~~~~~~~~v~~i 101 (371)
T d1k8kc_ 42 VQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGR-------------------TWKPTLVILRINRAARCV 101 (371)
T ss_dssp EEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETT-------------------EEEEEEECCCCSSCEEEE
T ss_pred EEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeeccc-------------------cccccccccccccccccc
Confidence 4445678999999999999998 78899999999999999762 134456677899999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-----
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK----- 314 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~----- 314 (479)
+|+|++. .|++|+.|+.|++|++...............|...|.+++|+|++. +|++|+.||+|++||+....
T Consensus 102 ~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~ 179 (371)
T d1k8kc_ 102 RWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERP 179 (371)
T ss_dssp EECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCC
T ss_pred ccccccc-cceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceeccccCcEEEEEeeccCcccccc
Confidence 9999998 9999999999999998775543322344567889999999999998 99999999999999987542
Q ss_pred ------------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 315 ------------SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 315 ------------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
..+.....|...|++++|+|++ .+|++++.||.|++||++... .+..+..|..+|++++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~s~~fs~d 254 (371)
T d1k8kc_ 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITE 254 (371)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEET
T ss_pred ccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeeccc----ceeeeecccccceeeeecCC
Confidence 1234456788999999999998 899999999999999999877 79999999999999999995
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCh----------HHH--------HHHhhhcccccC-CCCCCCCceEEeecCCCCeee
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDE----------EEE--------AEFKAKTREQVN-APEDLPPQLLFIHQGQKDLKE 443 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~----------~~~--------~~~~~~~~~~~~-~~~~~p~~l~~~h~g~~~V~~ 443 (479)
+ .+|++| .|+.+++|........ ... ..+......... ........+...| +..|++
T Consensus 255 ~-~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H--~~~I~~ 330 (371)
T d1k8kc_ 255 S-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH--KNSVSQ 330 (371)
T ss_dssp T-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS--SSCEEE
T ss_pred C-CEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc--cCCEEE
Confidence 4 666654 5787777665432110 000 000000000000 0000000111113 246999
Q ss_pred EEEeCCCC---cEEEEEcCCC-ceEEeeeccCCCC
Q 039302 444 LHWHTQVP---GMIVSTAADG-FNILMPSNIQSTL 474 (479)
Q Consensus 444 v~w~p~~~---~ll~s~~~dg-i~iw~~~~~~~~~ 474 (479)
++++|... ..++|++.|| |+||++.+++..+
T Consensus 331 i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~ 365 (371)
T d1k8kc_ 331 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 365 (371)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred EEEeCCCCcceEEEEEEcCCCeEEEEeCCcChhhh
Confidence 99987543 3688999999 9999998775443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-33 Score=267.97 Aligned_cols=252 Identities=20% Similarity=0.253 Sum_probs=208.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+....|...|++++|+|++ .+||||+ ||.|+|||+...... .........+|...|.+++|+
T Consensus 45 ~~~~~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~----------------~~~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 45 INTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNK----------------SPVSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp EEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCC----------------SCSEEEECSCTTSBEEEEEEC
T ss_pred EEECCCCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCccc----------------ceeEEeeecCCCCcEEEEEEc
Confidence 4556999999999999999 7888987 899999999863110 012233456789999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.||.|++||+....... ...+..|...|.+++|+|++. ++++++.|+.|++||+++.+ +......
T Consensus 107 ~dg~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~-~~~~~~~ 181 (337)
T d1gxra_ 107 PDGC-TLIVGGEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT-LVRQFQG 181 (337)
T ss_dssp TTSS-EEEEEESSSEEEEEECCCC--EE--EEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEEEECC
T ss_pred CCCC-EEEEeeccccccccccccccccc--ccccccccccccccccccccc-cccccccccccccccccccc-ccccccc
Confidence 9998 99999999999999987643322 244678899999999999998 99999999999999999875 6677788
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++++|++++ .++++|+.||.|++||+++.+ .+..+ .|...|++++|+|++ .+|++++.|+.|++||++
T Consensus 182 ~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~----~~~~~-~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGR----QLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE----EEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred cccccccccccccc-cccccccccccccccccccce----eeccc-ccccceEEEEEcccc-cccceecccccccccccc
Confidence 99999999999998 899999999999999999887 56655 488999999999965 999999999999999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
... ....+.+...|++++|+|++. +|++++.|+ |++|+..+.
T Consensus 255 ~~~-------------------------~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 255 KPD-------------------------KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp SSC-------------------------EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC
T ss_pred ccc-------------------------cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCC
Confidence 763 233333345799999999986 777888888 999987543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.4e-33 Score=266.18 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=205.3
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+.+.+..++++|++. .||.++ ++.|.+|++.. ......+.+|...|++++|+|++.
T Consensus 15 ~~r~~~~~~a~~~~g~-~l~~~~-~~~v~i~~~~~---------------------~~~~~~~~~H~~~v~~~~~sp~g~ 71 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGS---------------------LTDTEIYTEHSHQTTVAKTSPSGY 71 (311)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTC---------------------SSCCEEECCCSSCEEEEEECTTSS
T ss_pred CCCCCeEEEEEcCCCC-EEEEEe-CCEEEEEECCC---------------------CceeEEEcCCCCCEEEEEEeCCCC
Confidence 3456777899999994 555654 56799999987 567778899999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCceeeEEecCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--DGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
+||+|+.||+|+|||+.+..... ...+.+|..+|.+++|+|++. +|++++. ++.++||++.+.+ ....+.+|.
T Consensus 72 -~latg~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~ 146 (311)
T d1nr0a1 72 -YCASGDVHGNVRIWDTTQTTHIL--KTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGT-SNGNLTGQA 146 (311)
T ss_dssp -EEEEEETTSEEEEEESSSTTCCE--EEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCC-BCBCCCCCS
T ss_pred -eEeccccCceEeeeeeecccccc--ccccccccCcccccccccccc-cccccccccccccccccccccc-ccccccccc
Confidence 99999999999999998765422 134678999999999999998 8888875 4669999999875 667788999
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
..|++++|+|++..+|++|+.||.|++||+++.+ ....+..|..+|+++.|+|++ .+|++++.|+.|++||+...
T Consensus 147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~----~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~ 221 (311)
T d1nr0a1 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK----FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDG 221 (311)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC
T ss_pred cccccccccccceeeecccccccccccccccccc----cccccccccccccccccCccc-cccccccccccccccccccc
Confidence 9999999999996789999999999999999887 788999999999999999965 99999999999999999876
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.... ...........|. ..|++++|+|++. +|++++.|+ |+||++.+.
T Consensus 222 ~~~~---------------~~~~~~~~~~~h~--~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~ 270 (311)
T d1nr0a1 222 TKTG---------------VFEDDSLKNVAHS--GSVFGLTWSPDGT-KIASASADKTIKIWNVATL 270 (311)
T ss_dssp CEEE---------------ECBCTTSSSCSSS--SCEEEEEECTTSS-EEEEEETTSEEEEEETTTT
T ss_pred cccc---------------ccccccccccccc--ccccccccCCCCC-EEEEEeCCCeEEEEECCCC
Confidence 3210 0000001112222 4699999999986 777888888 999987543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.4e-33 Score=272.75 Aligned_cols=250 Identities=14% Similarity=0.132 Sum_probs=203.3
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
..+|+|++|+|++ .+||+|+.+|.|+|||+... ....+..+.+|.++|.+|+|+|++. +
T Consensus 7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~-------------------~~~~~~~l~gH~~~V~~l~fsp~~~-~ 65 (371)
T d1k8kc_ 7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGN-------------------KWVQVHELKEHNGQVTGVDWAPDSN-R 65 (371)
T ss_dssp SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETT-------------------EEEEEEEEECCSSCEEEEEEETTTT-E
T ss_pred CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCC-------------------CEEEEEEecCCCCCEEEEEECCCCC-E
Confidence 4789999999999 78899999999999998751 1245677899999999999999997 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce---eeEEecCCC
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA---LMSFKAHNA 325 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~---~~~~~~h~~ 325 (479)
|++|+.|++|+|||+.+..... ...+.+|...|.+++|+|+++ .|++|+.|++|++|++...... ......|..
T Consensus 66 l~s~s~D~~i~vWd~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 142 (371)
T d1k8kc_ 66 IVTCGTDRNAYVWTLKGRTWKP--TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 142 (371)
T ss_dssp EEEEETTSCEEEEEEETTEEEE--EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEECCCeEEEEeeccccccc--ccccccccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccc
Confidence 9999999999999997643222 133567889999999999998 9999999999999998876431 233457889
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--------------CceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--------------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--------------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.|.+++|+|++ .+|++|+.||.|++||+...... ...+.....|...|++++|+|++ .+|++++
T Consensus 143 ~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~ 220 (371)
T d1k8kc_ 143 TVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVS 220 (371)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEE
T ss_pred ccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccc
Confidence 99999999998 89999999999999998754311 23567778899999999999965 8999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.|+.|++||+.... .+.....+..+|.+++|+|++. +|+++.++.+.+|....
T Consensus 221 ~d~~i~iwd~~~~~------------------------~~~~~~~~~~~v~s~~fs~d~~-~la~g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 221 HDSTVCLADADKKM------------------------AVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDS 273 (371)
T ss_dssp TTTEEEEEEGGGTT------------------------EEEEEECSSCCEEEEEEEETTE-EEEEETTSSCEEEEEET
T ss_pred cCCcceEEeeeccc------------------------ceeeeecccccceeeeecCCCC-EEEEEcCCceEEEEeeC
Confidence 99999999997653 2222233335799999999984 77877766677876644
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-32 Score=259.41 Aligned_cols=255 Identities=13% Similarity=0.218 Sum_probs=196.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cCCCCceEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l 239 (479)
+...+.||.+.|++|+|+|++ .+||||+.||+|+|||+.+ .+.+..+ .+|...|.++
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~---------------------~~~~~~~~~~h~~~v~~v 61 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDIST---------------------GISNRVFPDVHATMITGI 61 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEECSSCSCSSCEEEE
T ss_pred cceEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcCCCCCcEEEE
Confidence 446788999999999999998 7899999999999999986 4455555 4688999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCc-------------------------------------ccCCCc
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF-------------------------------------IGHAAS 282 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~-------------------------------------~~h~~~ 282 (479)
+|+|++. +++++.|+.+++|+......... .... ......
T Consensus 62 ~~~~~g~--~~~~~~d~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (299)
T d1nr0a2 62 KTTSKGD--LFTVSWDDHLKVVPAGGSGVDSS-KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 138 (299)
T ss_dssp EECTTSC--EEEEETTTEEEEECSSSSSSCTT-SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred Eeeccce--eecccceeeEEEeccCCcccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999874 66777899999999754321000 0000 012345
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 039302 283 VEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS 362 (479)
Q Consensus 283 V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~ 362 (479)
+.+++|+|++. +|++|+.||.|++||+++..........|...|++++|+|++ .+|++|+.|+.|++||+.+... ..
T Consensus 139 ~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~-~~ 215 (299)
T d1nr0a2 139 SSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFE-LA 215 (299)
T ss_dssp EEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTE-ES
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-cc
Confidence 77889999888 999999999999999988753334456789999999999998 8999999999999999987652 11
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-Ce
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DL 441 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V 441 (479)
....+.+|..+|++++|+|++ .+|++|+.|+.|++||+...... .++..+.++. .|
T Consensus 216 ~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~----------------------~~~~~~~~~~~~v 272 (299)
T d1nr0a2 216 HTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDH----------------------PIIIKGAHAMSSV 272 (299)
T ss_dssp CCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSC----------------------CEEETTSSTTSCE
T ss_pred ccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcc----------------------eEEEecCCCCCcE
Confidence 334567799999999999965 99999999999999999876421 2333333333 57
Q ss_pred eeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 442 KELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 442 ~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..+.|.+. . +|++++.|+ |++|++.
T Consensus 273 ~~~~~~~~-~-~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 273 NSVIWLNE-T-TIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEEEET-T-EEEEEETTSCEEEEECC
T ss_pred EEEEECCC-C-EEEEEeCCCEEEEEecc
Confidence 77777654 3 677777777 9999873
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-32 Score=265.17 Aligned_cols=251 Identities=18% Similarity=0.310 Sum_probs=196.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.....|...|++++|+|++ .+|++|+.||.|++|+... .+.+..+.+|...|.+++|+
T Consensus 115 ~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~---------------------~~~~~~~~~h~~~v~~~~~~ 172 (388)
T d1erja_ 115 SSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIEN---------------------RKIVMILQGHEQDIYSLDYF 172 (388)
T ss_dssp ----CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEEC
T ss_pred ccccCCCCCEEEEEECCCC-Ccceecccccccccccccc---------------------cccccccccccccccccccc
Confidence 4566899999999999998 7899999999999999987 56777888999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE---
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--- 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--- 319 (479)
+.+. .+++|+.++.|++||+.+.... . ...+.....++.+++....+|++|+.||.|++||++++. ....
T Consensus 173 ~~~~-~~~~~~~~~~i~~~d~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~ 245 (388)
T d1erja_ 173 PSGD-KLVSGSGDRTVRIWDLRTGQCS----L-TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDS 245 (388)
T ss_dssp TTSS-EEEEEETTSEEEEEETTTTEEE----E-EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-
T ss_pred cccc-cccccccceeeeeeeccccccc----c-ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCc-cceeecc
Confidence 9987 9999999999999999764332 1 223344566667776555599999999999999999875 2222
Q ss_pred ----EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--------CceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 320 ----FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--------DSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 320 ----~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--------~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
..+|...|++++|+|++ .+|++|+.||.|++||++..... .........|...|++++|+|++ .+|
T Consensus 246 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 323 (388)
T d1erja_ 246 ENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYI 323 (388)
T ss_dssp -----CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEE
T ss_pred ccccccCCCCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEE
Confidence 24688999999999998 89999999999999999876431 12455667799999999999965 899
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEE------eCCCCcEEEEEcCC
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHW------HTQVPGMIVSTAAD 460 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w------~p~~~~ll~s~~~d 460 (479)
++|+.||.|++||+.+.+ .+....+| ..|.+++| +|++ .+|+|++.|
T Consensus 324 ~sg~~dg~i~vwd~~~~~-------------------------~~~~l~~H~~~V~~~~~~~~~~~spd~-~~l~s~s~D 377 (388)
T d1erja_ 324 LSGSKDRGVLFWDKKSGN-------------------------PLLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGD 377 (388)
T ss_dssp EEEETTSEEEEEETTTCC-------------------------EEEEEECCSSCEEEEEECSSCTTCTTC-EEEEEEETT
T ss_pred EEEeCCCEEEEEECCCCc-------------------------EEEEEeCCCCCEEEEEEecCcccCCCC-CEEEEEeCC
Confidence 999999999999998763 22222333 46888876 4566 488899988
Q ss_pred C-ceEEeeecc
Q 039302 461 G-FNILMPSNI 470 (479)
Q Consensus 461 g-i~iw~~~~~ 470 (479)
| |+||++..+
T Consensus 378 g~I~iW~~~k~ 388 (388)
T d1erja_ 378 CKARIWKYKKI 388 (388)
T ss_dssp SEEEEEEEEEC
T ss_pred CEEEEEeeeeC
Confidence 8 999998653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9e-31 Score=255.65 Aligned_cols=277 Identities=15% Similarity=0.173 Sum_probs=194.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|.+.|+||+|+|+| .+||+|+ ||.|+|||+................ ............+|...|++++|+
T Consensus 56 ~~~~~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 56 HKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---KDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEEC
T ss_pred EeeCCCCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccceEeeeccccccc---ccccccccccccCCCCCEEEEEEC
Confidence 3556899999999999999 7889976 8999999997632211100000000 000111223345688899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.||.|++|+...+... ..+.+|...|.+++|++++. .+++++.++.|++||+++.. .......
T Consensus 131 ~~~~-~l~s~~~dg~v~i~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~-~~~~~~~ 203 (388)
T d1erja_ 131 PDGK-FLATGAEDRLIRIWDIENRKIV----MILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQ-CSLTLSI 203 (388)
T ss_dssp TTSS-EEEEEETTSCEEEEETTTTEEE----EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EEEEEEC
T ss_pred CCCC-cceecccccccccccccccccc----cccccccccccccccccccc-cccccccceeeeeeeccccc-ccccccc
Confidence 9998 9999999999999999775442 34678999999999999988 89999999999999999874 4444444
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE-------eecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH-------FEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~-------~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
.....++.+.+..+.+|++|+.||.|++||+++.. .+.. ..+|..+|++++|+|++ .+|++++.|+.
T Consensus 204 -~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~ 277 (388)
T d1erja_ 204 -EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRS 277 (388)
T ss_dssp -SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred -ccccccccccCCCCCeEEEEcCCCeEEEeecccCc----cceeeccccccccCCCCCEEEEEECCCC-CEEEEEECCCc
Confidence 44556666666555999999999999999999876 3433 34688999999999965 89999999999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|++||++.......... ............+...|.+++|+|++. +|++++.|| |++|++.+.
T Consensus 278 i~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~ 340 (388)
T d1erja_ 278 VKLWNLQNANNKSDSKT------------PNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSG 340 (388)
T ss_dssp EEEEEC---------------------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTC
T ss_pred EEEEeccCCcccccccc------------ccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCC
Confidence 99999987653211100 001112222223335799999999986 777788887 999987543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=5.5e-31 Score=252.21 Aligned_cols=260 Identities=15% Similarity=0.169 Sum_probs=197.1
Q ss_pred EEEecCC-cceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQ-GCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~-~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
..+.+|. ..|++++|+|.. ..+||+|+.||+|+|||+......... .......+..|..+|.+++
T Consensus 56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~-------------~~~~~~~~~~~~~~v~~v~ 122 (325)
T d1pgua1 56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV-------------EVNVKSEFQVLAGPISDIS 122 (325)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE-------------EEEEEEEEECCSSCEEEEE
T ss_pred EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee-------------ecccccccccccCcEEEEE
Confidence 4566775 679999999853 379999999999999998753211100 0112234567889999999
Q ss_pred eCCCCCCeEEEEe--CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce--
Q 039302 241 WNPVAPGRLVSGD--CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-- 316 (479)
Q Consensus 241 ~s~~~~~~l~sg~--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-- 316 (479)
|++++. +|++++ .++.+++|+..++... ..+.+|...|++++|+|+++.++++++.|+.|++||++..+..
T Consensus 123 ~s~~~~-~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~ 197 (325)
T d1pgua1 123 WDFEGR-RLCVVGEGRDNFGVFISWDSGNSL----GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197 (325)
T ss_dssp ECTTSS-EEEEEECCSSCSEEEEETTTCCEE----EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred ECCCCC-ccceeeccccceEEEEeecccccc----eeeeecccccccccccccccceEEEeeccccccccccccccccee
Confidence 999998 777665 4678999999775442 4467899999999999999877899999999999999876421
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe---CCCCCEEEEEeCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS---PHEGSTLAVSSAD 393 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s---p~~~~~las~s~D 393 (479)
......|...|++++|+|+++.+|++|+.||.|++||+++.+ .+..+.+|..++.++.|+ | ++.+|++++.|
T Consensus 198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D 272 (325)
T d1pgua1 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD 272 (325)
T ss_dssp ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred cccccCCCCccEEeeeccccceeccccccccceeeeeecccc----ccccccccccccccceeeeecc-CCCEEEEEeCC
Confidence 122356788899999999876899999999999999999887 889999988887666555 4 34899999999
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
+.|+|||++..+. ...+..|.....+..+++.+.+...|++++.|| |+||++
T Consensus 273 ~~i~iwd~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 273 ATIRVWDVTTSKC----------------------VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp SEEEEEETTTTEE----------------------EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEECCCCCE----------------------EEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 9999999987631 122333443334554555444335788888888 999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5.5e-30 Score=240.84 Aligned_cols=206 Identities=20% Similarity=0.353 Sum_probs=183.3
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
......+|...+.++.++|++ ..+++++.|+.+++||+.. ...+..+.+|...+.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 150 (317)
T d1vyhc1 93 CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQT---------------------GYCVKTFTGHREWVRMVR 150 (317)
T ss_dssp EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEE
T ss_pred cccccccccccceeeeccCCC-ceEEeeccCcceeEeeccc---------------------ceeeeEEccCCCcceeee
Confidence 335567889999999999988 6778889999999999987 567788999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-------------------cEEEEEeC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-------------------DVFASCSV 301 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------------------~~l~s~s~ 301 (479)
|++++. +|++|+.||.|++|++.+.... ..+.+|...+.+++|+|+.. .++++++.
T Consensus 151 ~~~~~~-~l~~~~~d~~v~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (317)
T d1vyhc1 151 PNQDGT-LIASCSNDQTVRVWVVATKECK----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225 (317)
T ss_dssp ECTTSS-EEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred cccCCC-EEEEEeCCCeEEEEeeccceee----EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence 999998 9999999999999999875442 34667888999999988642 26899999
Q ss_pred CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 302 DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
||.|++||+++++ ++..+.+|...|.+++|+|++ .+|++|+.||.|+|||+++.+ ++..+.+|..+|++++|+|
T Consensus 226 d~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~V~~~~~s~ 299 (317)
T d1vyhc1 226 DKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSLDFHK 299 (317)
T ss_dssp TSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC----CCEEEECCSSCEEEEEECS
T ss_pred CCEEEEEECCCCc-EEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEcC
Confidence 9999999999885 788889999999999999998 899999999999999999887 7899999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 039302 382 HEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwd 400 (479)
++ .+|++|+.||+|+|||
T Consensus 300 ~~-~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 300 TA-PYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SS-SCEEEEETTSEEEEEC
T ss_pred CC-CEEEEEeCCCeEEEeC
Confidence 65 8999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.7e-29 Score=240.83 Aligned_cols=260 Identities=18% Similarity=0.279 Sum_probs=202.1
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-|-.++.|-|+. .+|++|. .++.|.||++.
T Consensus 55 ~~~I~~l~~s~~~-----------~~l~sgs-----~Dg~v~iWd~~--------------------------------- 85 (340)
T d1tbga_ 55 LAKIYAMHWGTDS-----------RLLVSAS-----QDGKLIIWDSY--------------------------------- 85 (340)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTTEEEEEETT---------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEE-----CCCceeeeecc---------------------------------
Confidence 3455677777763 3677763 67899999772
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCC-----------
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAP----------- 218 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~----------- 218 (479)
.......+..|.+.|++++|+|++ .++++|+.|+.+++|+....................
T Consensus 86 --------~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (340)
T d1tbga_ 86 --------TTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp --------TTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTE
T ss_pred --------cceeEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceecccccccccccccccccc
Confidence 223345677899999999999999 788999999999999986643222111000000000
Q ss_pred -------------ccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEE
Q 039302 219 -------------QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285 (479)
Q Consensus 219 -------------~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~ 285 (479)
.............+...+....+.+... ++++|+.|+.|++||+.++.. ...+.+|...|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~----~~~~~~h~~~i~~ 231 (340)
T d1tbga_ 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMC----RQTFTGHESDINA 231 (340)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEE----EEEECCCSSCEEE
T ss_pred cccccccccccccccccccccccccccceeEeeeccccccc-eeEEeecCceEEEEECCCCcE----EEEEeCCCCCeEE
Confidence 0001122333445667888999999887 999999999999999987543 2457789999999
Q ss_pred EEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 286 l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
++|+|++. +|++|+.||.|++||++... ....+ ..+...|++++|+|++ .+|++|+.||.|++||+++++ +
T Consensus 232 v~~~p~~~-~l~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~----~ 304 (340)
T d1tbga_ 232 ICFFPNGN-AFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD----R 304 (340)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTTTE-EEEEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCC----E
T ss_pred EEECCCCC-EEEEEeCCCeEEEEeecccc-cccccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCc----E
Confidence 99999998 99999999999999999875 33333 4567789999999999 899999999999999999887 8
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
+..+.+|..+|++++|+|++ .+|++||.||+|+|||
T Consensus 305 ~~~~~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 305 AGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence 99999999999999999965 8999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.2e-29 Score=236.87 Aligned_cols=244 Identities=18% Similarity=0.223 Sum_probs=183.9
Q ss_pred EEEecCCcce-eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQGCV-NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V-~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
..+.+|...| +|+.+ ++ ++||||+.||+|+|||+.+ .+++.++.+|.+.|++|+|
T Consensus 6 ~tL~GH~~~vitc~~~--~~-~~l~tgs~Dg~i~vWd~~~---------------------~~~~~~l~~H~~~V~~l~~ 61 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--ED-NYVITGADDKMIRVYDSIN---------------------KKFLLQLSGHDGGVWALKY 61 (355)
T ss_dssp EEEECCSSSCEEEEEE--ET-TEEEEEETTTEEEEEETTT---------------------TEEEEEEECCSSCEEEEEE
T ss_pred EEECCcCCCcEEEEEE--CC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEECCCCCEEEEEE
Confidence 5688999886 56655 45 6899999999999999987 6788899999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-------
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------- 314 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------- 314 (479)
++++ +|++|+.||.|++|++........ .....+...+..+.+++++. .+++++.|+.|++||+++..
T Consensus 62 s~~~--~l~s~s~D~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~ 136 (355)
T d1nexb2 62 AHGG--ILVSGSTDRTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGE 136 (355)
T ss_dssp ETTT--EEEEEETTCCEEEEETTTTEEEEE--ECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC---------
T ss_pred cCCC--EEEEEecccccccccccccccccc--cccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccc
Confidence 9853 899999999999999977543211 11222233344455555555 66666666666666654321
Q ss_pred -------------------------------------------------------ceeeEEecCCCCEEEEEEcCCCCcE
Q 039302 315 -------------------------------------------------------SALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 315 -------------------------------------------------------~~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
..+.....+...+.++.|+|.+ .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (355)
T d1nexb2 137 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KR 215 (355)
T ss_dssp --CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TE
T ss_pred cceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc-ee
Confidence 1223334566678889999998 89
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccc
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTRE 419 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~ 419 (479)
+++++.|+.|++||+++.. .+..+.+|...|++++|++ .+|++|+.||.|++||++...
T Consensus 216 ~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-------------- 274 (355)
T d1nexb2 216 CISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS-------------- 274 (355)
T ss_dssp EEEEETTSCEEEEETTTCC----EEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCC--------------
T ss_pred eecccccceEEeeeccccc----ccccccccccccccccccc---ceeeeeecccccccccccccc--------------
Confidence 9999999999999999887 8999999999999999975 689999999999999998663
Q ss_pred ccCCCCCCCCceEEeecCCCCeeeEEE-eCCCCcEEEEEcCCCceEEeeecc
Q 039302 420 QVNAPEDLPPQLLFIHQGQKDLKELHW-HTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 420 ~~~~~~~~p~~l~~~h~g~~~V~~v~w-~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+.+..|. ..+..+.+ ++++ .++++++++.|+||++.+.
T Consensus 275 ----------~~~~~~~--~~~~~~~~~~~~~-~~l~~g~d~~i~vwd~~tg 313 (355)
T d1nexb2 275 ----------RKFSYHH--TNLSAITTFYVSD-NILVSGSENQFNIYNLRSG 313 (355)
T ss_dssp ----------EEEEEEC--TTCCCCCEEEECS-SEEEEEETTEEEEEETTTC
T ss_pred ----------eeccccc--CCceEEEEEcCCC-CEEEEEeCCEEEEEECCCC
Confidence 3444554 44555544 5554 6888887666999998654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.6e-28 Score=228.10 Aligned_cols=243 Identities=19% Similarity=0.291 Sum_probs=186.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|.+ ++++++ .+||||+.||+|+|||+.+ .+++.++.+|...|++++|+
T Consensus 10 ~~l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~---------------------~~~~~~~~~h~~~V~~v~~~ 66 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVT---------------------GKCLRTLVGHTGGVWSSQMR 66 (342)
T ss_dssp EEEECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTT---------------------CCEEEECCCCSSCEEEEEEE
T ss_pred EEECCcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEEeCCCCCEEEEEeC
Confidence 357799999865 356667 6899999999999999987 67889999999999999998
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCcccc---------------------------------------------------
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNV--------------------------------------------------- 271 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--------------------------------------------------- 271 (479)
++ +|++|+.|+.+++|+.........
T Consensus 67 ~~---~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 67 DN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp TT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred CC---ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee
Confidence 73 899999999999998754210000
Q ss_pred -------------------------CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 272 -------------------------DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 272 -------------------------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
....+.+|...+..+.+ ++. .|++|+.||.|++||++..+ ++..+..|...
T Consensus 144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~ 219 (342)
T d2ovrb2 144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGN-CIHTLTGHQSL 219 (342)
T ss_dssp EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCC-EEEEECCCCSC
T ss_pred ccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCC-EEEEEeCCCeEEEeecccce-eeeEecccccc
Confidence 00011234444444444 455 89999999999999999885 77888999999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
+.++++++ .+|++|+.||.|++||+...+ ....+.. |...+.++.+++ .+|++|+.||+|+|||+++
T Consensus 220 v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 220 TSGMELKD---NILVSGNADSTVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEETTTCC----EEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTT
T ss_pred eeEEecCC---CEEEEEcCCCEEEEEeccccc----ccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCC
Confidence 99999885 689999999999999999877 5666654 566788888865 7899999999999999988
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeec-CC-CCeeeEEEeCCCCcEEEEEcCCC-----ceEEee
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQ-KDLKELHWHTQVPGMIVSTAADG-----FNILMP 467 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~-~~V~~v~w~p~~~~ll~s~~~dg-----i~iw~~ 467 (479)
++.. ..+...+. ++ ..|++++|+|++ .++++++.|| |.+|++
T Consensus 290 g~~i---------------------~~~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 290 GEFI---------------------RNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp CCEE---------------------EEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEEC
T ss_pred CCEE---------------------EEEecccCCCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEEEEEeC
Confidence 7411 01111111 22 359999999997 4888888887 667765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=7.1e-28 Score=230.38 Aligned_cols=211 Identities=15% Similarity=0.172 Sum_probs=169.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEE-eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASW-ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.....|.++|++++|++++..+++++ +.++.+++|+... .+.+..+.+|...|.+++|
T Consensus 109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~ 167 (325)
T d1pgua1 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---------------------GNSLGEVSGHSQRINACHL 167 (325)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---------------------CCEEEECCSCSSCEEEEEE
T ss_pred cccccccCcEEEEEECCCCCccceeeccccceEEEEeecc---------------------cccceeeeecccccccccc
Confidence 34668999999999999995554443 3467899999886 6778889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+|+++.++++++.|+.|++|++....... .......|...|.+++|+|++..+|++|+.||.|++||+++++ .+..+.
T Consensus 168 ~~~~~~~~~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~ 245 (325)
T d1pgua1 168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSA-SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIE 245 (325)
T ss_dssp CSSSSCEEEEEETTTEEEEEETTTBEEEE-EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECC
T ss_pred cccccceEEEeecccccccccccccccce-ecccccCCCCccEEeeeccccceeccccccccceeeeeecccc-cccccc
Confidence 99988668899999999999987643322 1244667889999999999866699999999999999999886 677788
Q ss_pred cCCCCEEEEEEc---CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC--eEEEEEeCCCCCEEEEEeCCCcE
Q 039302 322 AHNADVNVISWN---RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP--VTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 322 ~h~~~v~~l~~~---p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~--I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+|...+..+.|+ |++ .+|++|+.|+.|+|||+++.+ ++..+..|... +..+++.+.+..+|+++|.||.|
T Consensus 246 ~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i 320 (325)
T d1pgua1 246 DDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSK----CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320 (325)
T ss_dssp BTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTE----EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCE
T ss_pred ccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCC----EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEE
Confidence 787766555444 456 799999999999999999887 78887776654 34444444334689999999999
Q ss_pred EEEEC
Q 039302 397 TIWDL 401 (479)
Q Consensus 397 ~iwdl 401 (479)
+|||+
T Consensus 321 ~vwdl 325 (325)
T d1pgua1 321 NFYEL 325 (325)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.1e-29 Score=232.69 Aligned_cols=241 Identities=15% Similarity=0.172 Sum_probs=178.1
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.++|++++|+| |+||+.||+|++||+.. ...+|...|.+++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~--------------------------~~~~h~~~V~~~~ 53 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS--------------------------MHQDHSNLIVSLD 53 (287)
T ss_dssp EEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTE--------------------------EECCCCSCEEEEE
T ss_pred eeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCC--------------------------CCCCCCCCEEEEE
Confidence 3347889999999999986 78999999999999875 1347888999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccc--------------c--CC---CCc----------ccCCCcEEEEEECCC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWN--------------V--DP---NPF----------IGHAASVEDLQWSPT 291 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~--------------~--~~---~~~----------~~h~~~V~~l~~sp~ 291 (479)
|++.. .+++++.|++|++|++....... . .. ..+ ..+...+ .+++++
T Consensus 54 ~~~~~--~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 129 (287)
T d1pgua2 54 NSKAQ--EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLS 129 (287)
T ss_dssp CCSTT--CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE--EEEEEC
T ss_pred ecCCC--eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccccee--eeeecc
Confidence 98754 68899999999999875321000 0 00 000 0112222 345566
Q ss_pred CCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC
Q 039302 292 ESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 292 ~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+. .+++++.+ +.|++|++............|...+++++|+|++ .+|++|+.||.|++||+++... ....+.+|
T Consensus 130 ~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h 204 (287)
T d1pgua2 130 QN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV---KTSRWAFR 204 (287)
T ss_dssp SS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE---EECCSCCC
T ss_pred Cc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccc---cccccccc
Confidence 66 66666665 5799999986542222234577889999999999 8999999999999999998762 33356789
Q ss_pred CCCeEEEEEeCCC---------CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CC
Q 039302 371 KHPVTSIEWSPHE---------GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KD 440 (479)
Q Consensus 371 ~~~I~~v~~sp~~---------~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~ 440 (479)
..+|++++|+|.. +.+|++|+.|++|+|||+.... .++....+| ..
T Consensus 205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~------------------------~~~~~~~~h~~~ 260 (287)
T d1pgua2 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM------------------------KIIKALNAHKDG 260 (287)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT------------------------CCEEETTSSTTC
T ss_pred ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC------------------------eEEEEeCCCCCC
Confidence 9999999999843 4689999999999999997653 233333334 47
Q ss_pred eeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 441 LKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
|++++|+|++ .|++++.|+ |++|++
T Consensus 261 V~~v~~~~~~--~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 261 VNNLLWETPS--TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred eEEEEECCCC--EEEEEECCCeEEEEEE
Confidence 9999999975 467777777 999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.7e-27 Score=221.14 Aligned_cols=243 Identities=18% Similarity=0.318 Sum_probs=188.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....|...|+|+.+ ++ .+||||+.||+|+|||+.+ .+++.++.+|...|++|+|+
T Consensus 10 ~~~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~---------------------~~~~~~l~~H~~~V~~v~~~- 64 (293)
T d1p22a2 10 CRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNT---------------------LECKRILTGHTGSVLCLQYD- 64 (293)
T ss_dssp CCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSS---------------------CCEEEEECCCSSCEEEEECC-
T ss_pred ccCCCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEecCCCCEeeeecc-
Confidence 35578889998765 55 7899999999999999987 78889999999999999985
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCcccc---------------------------------------CCCCcccCCCcEE
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNV---------------------------------------DPNPFIGHAASVE 284 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~---------------------------------------~~~~~~~h~~~V~ 284 (479)
+. +|++|+.||.|++|++..+..... ....+..|...|.
T Consensus 65 -~~-~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 65 -ER-VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp -SS-EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred -cc-eeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccc
Confidence 44 999999999999999876431000 0011234666777
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE
Q 039302 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~ 364 (479)
.+.+.+. .+++++.|+.|++||+++.+ ++..+.++...+..+.+++ .+|++|+.||.|++||+++.. .+
T Consensus 143 ~~~~~~~---~~~~~s~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~----~~ 211 (293)
T d1p22a2 143 VVDFDDK---YIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA----CL 211 (293)
T ss_dssp EEEEETT---EEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC----EE
T ss_pred cceeccc---ccccccCCCceeeecCCCCc-EEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce----ee
Confidence 7777643 78899999999999999886 7778889999999998874 689999999999999999887 78
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeee
Q 039302 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKE 443 (479)
Q Consensus 365 ~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~ 443 (479)
..+.+|...|..+.+. +.+|++|+.||.|++||+....... .......+....+| ..|++
T Consensus 212 ~~~~~~~~~v~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~~~H~~~V~~ 272 (293)
T d1p22a2 212 RVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLVAALDPR----------------APAGTLCLRTLVEHSGRVFR 272 (293)
T ss_dssp EEECCCSSCEEEEECC---SSEEEEEETTSCEEEEEHHHHTSTT----------------SCTTTTEEEEECCCSSCCCC
T ss_pred eeecccceeeeecccc---ceEEEEEcCCCEEEEEECCCCcccc----------------ccCCceeeEEecCCCCCEEE
Confidence 8899999988765543 3899999999999999986543210 01111222332333 47999
Q ss_pred EEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 444 LHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
++|++ .+|+|++.|| |+||+
T Consensus 273 v~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 273 LQFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEECS---SCEEECCSSSEEEEEC
T ss_pred EEEcC---CEEEEEecCCEEEEeC
Confidence 99975 3688899998 99996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=9.9e-28 Score=229.24 Aligned_cols=246 Identities=19% Similarity=0.289 Sum_probs=173.2
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC--CCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG--HKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~ 237 (479)
.+...+.+|.+.|++|+|+|++ +|++|+.||+|++|++.... ....... +...+.
T Consensus 44 ~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~---------------------~~~~~~~~~~~~~~~ 100 (355)
T d1nexb2 44 KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC---------------------CTHVFEGHNSTVRCL 100 (355)
T ss_dssp EEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTE---------------------EEEEECCCSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEEcCCC--EEEEEecccccccccccccc---------------------ccccccccccccccc
Confidence 3445788999999999999864 78899999999999998732 1111211 112333
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc-----------------------------------------------
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN----------------------------------------------- 270 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~----------------------------------------------- 270 (479)
.+.+.+++. .+++++.|+.|++|++.+.....
T Consensus 101 ~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (355)
T d1nexb2 101 DIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179 (355)
T ss_dssp EEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred ccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc
Confidence 444555554 56666666666666654321000
Q ss_pred ------------cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCc
Q 039302 271 ------------VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC 338 (479)
Q Consensus 271 ------------~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 338 (479)
.......++...+.++.|+|.+. .+++++.||.|++||++++. .+..+.+|...|++++|++ .
T Consensus 180 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~~~---~ 254 (355)
T d1nexb2 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGE-LMYTLQGHTALVGLLRLSD---K 254 (355)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCC-EEEEECCCSSCCCEEEECS---S
T ss_pred cceeeeeecccccceeeeeccccccccccccccce-eeecccccceEEeeeccccc-ccccccccccccccccccc---c
Confidence 00112335667788999999998 99999999999999999885 7788899999999999985 6
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcc
Q 039302 339 LLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTR 418 (479)
Q Consensus 339 ~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~ 418 (479)
+|++|+.||.|++||+++.. ..+..|...+.++.+.+.++.+|++| .|++|+|||+++++..
T Consensus 255 ~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~----------- 316 (355)
T d1nexb2 255 FLVSAAADGSIRGWDANDYS------RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV----------- 316 (355)
T ss_dssp EEEEECTTSEEEEEETTTCC------EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBC-----------
T ss_pred eeeeeecccccccccccccc------eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEE-----------
Confidence 89999999999999998765 34556777777766544455776665 5899999999876411
Q ss_pred cccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 419 EQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 419 ~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
...+..| ...|.+++|+|+ .++++++.|| +.||.
T Consensus 317 ----------~~~~~~~--~~~V~~v~~~~~--~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 317 ----------HANILKD--ADQIWSVNFKGK--TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp ----------CSCTTTT--CSEEEEEEEETT--EEEEEEESSSCEEEEE
T ss_pred ----------EEEecCC--CCCEEEEEEcCC--eEEEEEECCCcEEEEE
Confidence 0111112 246999999986 5788888888 55554
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.8e-28 Score=229.13 Aligned_cols=257 Identities=14% Similarity=0.144 Sum_probs=177.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|...|++|+|+|++ .+||+|+.||+|+|||+..... ...+....+|..+|.+++|+
T Consensus 5 ~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~------------------~~~~~~~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEEEEEE
T ss_pred EcCCCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCc------------------ceEEEEecCCCCCEEEEEEe
Confidence 3567899999999999998 7889999999999999976210 11223334799999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE---
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--- 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--- 319 (479)
|++..+|++|+.||.|++|++........ ....+........+.+... .+++++.++++++||++........
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~ 141 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQA---LTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEEE---CBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred CCCCCEEEEcccccceeeeeccccccccc---ccccccccccccccccccc-cccccccccccceeeccccccceeeecc
Confidence 97655899999999999999977554321 1222333334445555555 8999999999999999765422111
Q ss_pred EecC--CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------------------------------eEE-
Q 039302 320 FKAH--NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS-------------------------------VVA- 365 (479)
Q Consensus 320 ~~~h--~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~-------------------------------~~~- 365 (479)
...+ ......+.+.+.+ ..+++++.||.|++||++....... .+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v 220 (342)
T d1yfqa_ 142 LNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220 (342)
T ss_dssp SCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred cccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEE
Confidence 1111 2233445555555 6778888888888888765442100 000
Q ss_pred -------------------------EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccc
Q 039302 366 -------------------------HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQ 420 (479)
Q Consensus 366 -------------------------~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 420 (479)
....|...|++|+|+|++ .+||+|+.||.|+|||+.+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~--------------- 284 (342)
T d1yfqa_ 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK--------------- 284 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE---------------
T ss_pred EEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCc---------------
Confidence 011355678999999965 899999999999999998763
Q ss_pred cCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 421 VNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 421 ~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.+.....+..+..++|+|++..+++++++|.+++|....
T Consensus 285 ----------~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 285 ----------KIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp ----------EEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred ----------EEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 233322223566678888887666667777677776544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=4.9e-26 Score=213.91 Aligned_cols=225 Identities=14% Similarity=0.190 Sum_probs=162.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccc---------cc--cCCCCCcc-ccCCCcEE-----
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESE---------TV--AGHGAPQV-LNQSPLVK----- 228 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~---------~~--~~~~~~~~-~~~~~~~~----- 228 (479)
.+|.+.|++++|+|++ .++ +++.|+.+++|+............ .. ...+.... .....+..
T Consensus 52 ~~h~~~v~~v~~~~~g-~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~ 129 (299)
T d1nr0a2 52 DVHATMITGIKTTSKG-DLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129 (299)
T ss_dssp CSCSSCEEEEEECTTS-CEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred CCCCCcEEEEEeeccc-eee-cccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4789999999999998 555 457789999999865321110000 00 00000000 00000011
Q ss_pred --ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 229 --FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 229 --~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
-......+.+++|+|++. +|++|+.||.|++||+.+..... .....|...|++++|+|++. +|++++.|+.|+
T Consensus 130 ~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~ 204 (299)
T d1nr0a2 130 LTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSE---VKTIVHPAEITSVAFSNNGA-FLVATDQSRKVI 204 (299)
T ss_dssp EEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEE---EEEEECSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccc---cccccccccccccccccccc-cccccccccccc
Confidence 112334688999999997 99999999999999997643321 23457889999999999998 999999999999
Q ss_pred EEEcCCCCc--eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCC
Q 039302 307 IWDTRVGKS--ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHE 383 (479)
Q Consensus 307 iwD~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~ 383 (479)
+||+.+... ....+..|...|++++|+|++ .+|++|+.||.|+|||+++... ..+..... +...|.++.|.+ +
T Consensus 205 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~ 280 (299)
T d1nr0a2 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAMSSVNSVIWLN-E 280 (299)
T ss_dssp EEEGGGTTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTS--CCEEETTSSTTSCEEEEEEEE-T
T ss_pred cccccccccccccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCc--ceEEEecCCCCCcEEEEEECC-C
Confidence 999987643 233457799999999999999 8999999999999999998763 13333334 445677777765 4
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 039302 384 GSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~ 402 (479)
.+|++++.|++|+|||+.
T Consensus 281 -~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 281 -TTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp -TEEEEEETTSCEEEEECC
T ss_pred -CEEEEEeCCCEEEEEecc
Confidence 789999999999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.9e-25 Score=219.01 Aligned_cols=223 Identities=14% Similarity=0.210 Sum_probs=157.9
Q ss_pred EEEecCCcceeEEEEec------CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 163 LRKVAHQGCVNRIRAMS------QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p------~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
.....|...+..+.... ....++++++.||.|++|++............ .........+...+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 122 (393)
T d1sq9a_ 54 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE-----------KLDLLDSDMKKHSF 122 (393)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE-----------EECCSCTTGGGSCE
T ss_pred EeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecc-----------ccceeeeccCCCce
Confidence 34556666554433322 12358889999999999998653211100000 00000112344578
Q ss_pred EEEEeCCCCC----CeEEEEeCCCeEEEEecCCCCccc--------------cCCCCcccCCCcEEEEEECCCCCcEEEE
Q 039302 237 YAIDWNPVAP----GRLVSGDCNSCIHLWEPASDATWN--------------VDPNPFIGHAASVEDLQWSPTESDVFAS 298 (479)
Q Consensus 237 ~~l~~s~~~~----~~l~sg~~dg~I~lwd~~~~~~~~--------------~~~~~~~~h~~~V~~l~~sp~~~~~l~s 298 (479)
+.++|.+... .++++++.||.|++|++....... ........+...+++++|+|++ +||+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~las 200 (393)
T d1sq9a_ 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIAT 200 (393)
T ss_dssp EEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEE
T ss_pred EEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEE
Confidence 8888887643 278999999999999985432100 0011223455678999999986 7999
Q ss_pred EeCCCcEEEEEcCCCCceee------EEecCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEe--
Q 039302 299 CSVDGNIAIWDTRVGKSALM------SFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHF-- 367 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~~~~~------~~~~h~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~-- 367 (479)
|+.||+|+|||+++++ ++. .+.+|...|++++|+|++ .+|++|+.|+ .|++||++++. .+..+
T Consensus 201 gs~Dg~i~iwd~~~~~-~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~----~~~~l~~ 274 (393)
T d1sq9a_ 201 GFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE----RIGSLSV 274 (393)
T ss_dssp ECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC----EEEEECB
T ss_pred EeCCCcEEEEeecccc-cccccccccccccccceEEEccccccc-ceeeeecCCCCcceeeecccccce----eeeeecc
Confidence 9999999999999875 333 345789999999999999 8999999987 49999999876 45544
Q ss_pred -----------ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 368 -----------EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 368 -----------~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+|...|++|+|+|++ .+|+|||.|++|+|||+.++.
T Consensus 275 ~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 275 PTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp C--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE
T ss_pred ccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCC
Confidence 4799999999999965 999999999999999998874
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.9e-25 Score=218.98 Aligned_cols=270 Identities=17% Similarity=0.208 Sum_probs=179.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE------
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY------ 237 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~------ 237 (479)
...+|.+.|++|++++ .+++|+|.|++|+|||......... .........|...+.
T Consensus 9 ~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 70 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENP---------------KDKSYSHFVHKSGLHHVDVLQ 70 (393)
T ss_dssp ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCG---------------GGGEEEEECCTTCEEEEEEEE
T ss_pred cCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcc---------------cceeEeeeeccCCceEeeeEe
Confidence 4569999999999875 5788999999999999765321110 111222233443332
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc------cCCCCcccCCCcEEEEEECCCCC----cEEEEEeCCCcEEE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN------VDPNPFIGHAASVEDLQWSPTES----DVFASCSVDGNIAI 307 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~------~~~~~~~~h~~~V~~l~~sp~~~----~~l~s~s~dg~I~i 307 (479)
.+..+......+++++.||.|++|++....... ........+...+..++|.+... .++++++.||+|++
T Consensus 71 ~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred eeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 223332222268899999999999986543211 01111233556788888877642 47899999999999
Q ss_pred EEcCCCCc-----------------eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE----
Q 039302 308 WDTRVGKS-----------------ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH---- 366 (479)
Q Consensus 308 wD~~~~~~-----------------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~---- 366 (479)
|++..... .......+...+++++|+|++ +||+|+.||+|+|||+++.+ ++..
T Consensus 151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~----~~~~~~~~ 224 (393)
T d1sq9a_ 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR----PLYNFESQ 224 (393)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE----EEEEEECC
T ss_pred EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccc----cccccccc
Confidence 99864311 011113455668999999987 88999999999999999876 4443
Q ss_pred --eecCCCCeEEEEEeCCCCCEEEEEeCCCc---EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCe
Q 039302 367 --FEYHKHPVTSIEWSPHEGSTLAVSSADNQ---LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDL 441 (479)
Q Consensus 367 --~~~h~~~I~~v~~sp~~~~~las~s~Dg~---I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V 441 (479)
+.+|..+|++++|+|++ .+|++|+.|++ |++||+..+...... ............+..|. ..|
T Consensus 225 ~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l---------~~~~~~~~~~~~~~gH~--~~V 292 (393)
T d1sq9a_ 225 HSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSL---------SVPTHSSQASLGEFAHS--SWV 292 (393)
T ss_dssp C---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEE---------CBC--------CCBSBS--SCE
T ss_pred cccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeee---------ccccccccceeeeeccc--Cce
Confidence 45689999999999955 99999999875 899999876421000 00000001111222333 469
Q ss_pred eeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 442 KELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 442 ~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++++|+|+++ +|+|++.|+ |+||++.+.
T Consensus 293 ~~l~fspd~~-~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 293 MSLSFNDSGE-TLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp EEEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred eeeccCCCCC-eeEEECCCCEEEEEECCCC
Confidence 9999999986 889999998 999997653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-23 Score=199.36 Aligned_cols=221 Identities=20% Similarity=0.347 Sum_probs=165.4
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccc--------------------------cCC
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETV--------------------------AGH 215 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~--------------------------~~~ 215 (479)
...+.+|.+.|++++|+| .+|++|+.|+.+++|+.............. ...
T Consensus 50 ~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 126 (342)
T d2ovrb2 50 LRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126 (342)
T ss_dssp EEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred EEEEeCCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccc
Confidence 346789999999999987 488999999999999987642211000000 000
Q ss_pred C---------------------------C-C-----ccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 216 G---------------------------A-P-----QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 216 ~---------------------------~-~-----~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
. . . .......+..+.+|...+..+.+ ++. +|++|+.||.|++||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d 203 (342)
T d2ovrb2 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWD 203 (342)
T ss_dssp CCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEE
T ss_pred ccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCC-EEEEEeCCCeEEEee
Confidence 0 0 0 00123345566677776666655 455 999999999999999
Q ss_pred cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe---cCCCCEEEEEEcCCCCcE
Q 039302 263 PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK---AHNADVNVISWNRLASCL 339 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~ 339 (479)
+...... ..+.+|...|.++.+++ . +|++|+.||.|++||+...+ ....+. .|...+.++.+++ .+
T Consensus 204 ~~~~~~~----~~~~~~~~~v~~~~~~~--~-~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~ 272 (342)
T d2ovrb2 204 VETGNCI----HTLTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNK---NF 272 (342)
T ss_dssp TTTCCEE----EEECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEECS---SE
T ss_pred cccceee----eEecccccceeEEecCC--C-EEEEEcCCCEEEEEeccccc-ccccccccceeeeceeecccCC---Ce
Confidence 9876542 45678899999998875 3 89999999999999999875 344443 4667788888875 68
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEEee-----cCCCCeEEEEEeCCCCCEEEEEeCCCc----EEEEECCCC
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFE-----YHKHPVTSIEWSPHEGSTLAVSSADNQ----LTIWDLSLE 404 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-----~h~~~I~~v~~sp~~~~~las~s~Dg~----I~iwdl~~~ 404 (479)
+++|+.||.|+|||+++++ .+..+. +|...|++++|+|++ .+||+|+.||+ |++||+...
T Consensus 273 ~~s~s~Dg~i~iwd~~tg~----~i~~~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 273 VITSSDDGTVKLWDLKTGE----FIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEEETTSEEEEEETTTCC----EEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEcCCCEEEEEECCCCC----EEEEEecccCCCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEEEEEeCCCC
Confidence 9999999999999999987 677664 577889999999954 89999999986 999999753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-24 Score=202.70 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=158.0
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccc--------cCCCCC-----ccccCCCcEEecCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETV--------AGHGAP-----QVLNQSPLVKFGGH 232 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~h 232 (479)
.+|...|.++.+++.+ .+++++.|++|++|++............. ...... .......+..+..
T Consensus 43 ~~h~~~V~~~~~~~~~--~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 119 (287)
T d1pgua2 43 QDHSNLIVSLDNSKAQ--EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL- 119 (287)
T ss_dssp CCCCSCEEEEECCSTT--CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred CCCCCCEEEEEecCCC--eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc-
Confidence 4788999999988765 56788999999999876421100000000 000000 0011223333332
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCC-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNS-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
...+ .++++.+. .+++++.++ .|++|++....... .....|...|++++|+|++. +|++|+.||.|++||+.
T Consensus 120 ~~~~--~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~ 192 (287)
T d1pgua2 120 NSPG--SAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSF---DLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQ 192 (287)
T ss_dssp SSCE--EEEEECSS-EEEEEETTTSCEEEEETTEEEEEE---ECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred ccee--eeeeccCc-ceeeeccccceeeeeeccccceee---eeeeccCCceeEEEeccCcc-ccccccccccccceeec
Confidence 2233 34556665 677776665 79999986533211 22345778999999999998 99999999999999999
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCC---------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLA---------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~---------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
+.......+..|...|++++|+|.+ ..+|++|+.|+.|+|||++.... .+..+.+|...|++++|+|+
T Consensus 193 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~---~~~~~~~h~~~V~~v~~~~~ 269 (287)
T d1pgua2 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK---IIKALNAHKDGVNNLLWETP 269 (287)
T ss_dssp TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC---CEEETTSSTTCEEEEEEEET
T ss_pred ccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe---EEEEeCCCCCCeEEEEECCC
Confidence 8764444567899999999999854 36899999999999999987554 77888899999999999994
Q ss_pred CCCEEEEEeCCCcEEEEEC
Q 039302 383 EGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl 401 (479)
..|+++|.|++|++|++
T Consensus 270 --~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 270 --STLVSSGADACIKRWNV 286 (287)
T ss_dssp --TEEEEEETTSCEEEEEE
T ss_pred --CEEEEEECCCeEEEEEE
Confidence 46899999999999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.3e-23 Score=192.85 Aligned_cols=220 Identities=20% Similarity=0.306 Sum_probs=163.7
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccccccccccc----------------CCC------CC
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVA----------------GHG------AP 218 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~----------------~~~------~~ 218 (479)
+...+.+|.+.|++++|. + .+|++|+.||.|++|++.............. ... ..
T Consensus 47 ~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (293)
T d1p22a2 47 CKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123 (293)
T ss_dssp EEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred EEEEEecCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecc
Confidence 334678999999999874 3 6899999999999999976432211100000 000 00
Q ss_pred ccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE
Q 039302 219 QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS 298 (479)
Q Consensus 219 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 298 (479)
..........+..|...+.++.+.+. .+++++.|+.|++||+.+.... ..+.++...|..+.+++ . .+++
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~~~--~-~l~~ 193 (293)
T d1p22a2 124 SPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFV----RTLNGHKRGIACLQYRD--R-LVVS 193 (293)
T ss_dssp SSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEEET--T-EEEE
T ss_pred ccccccccccccccccccccceeccc---ccccccCCCceeeecCCCCcEE----EEEcccccccccccCCC--C-eEEE
Confidence 00112233455677888888887653 7889999999999999876542 34677888898888864 4 8999
Q ss_pred EeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC-----CCceEEEeecCCCC
Q 039302 299 CSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG-----GDSVVAHFEYHKHP 373 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~-----~~~~~~~~~~h~~~ 373 (479)
++.||+|++||+++.. .+..+.+|...+..+.+ ++ .+|++|+.||.|++||++.... ...++..+.+|.++
T Consensus 194 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~--~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~ 269 (293)
T d1p22a2 194 GSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269 (293)
T ss_dssp EETTSCEEEEETTTCC-EEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred ecCCCEEEEEecccce-eeeeecccceeeeeccc--cc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCC
Confidence 9999999999999885 67777888888876554 44 7899999999999999764321 12367889999999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
|++++|++ .+|+|||.||+|+|||
T Consensus 270 V~~v~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 270 VFRLQFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCCEEECS---SCEEECCSSSEEEEEC
T ss_pred EEEEEEcC---CEEEEEecCCEEEEeC
Confidence 99999964 6799999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=5.7e-22 Score=187.24 Aligned_cols=211 Identities=9% Similarity=0.075 Sum_probs=142.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-ceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-EGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~ 241 (479)
....+|.+.|++++|+|++..+|++|+.||.|++|++.. .........+.. ......+
T Consensus 50 ~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 108 (342)
T d1yfqa_ 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG---------------------SPSFQALTNNEANLGICRIC 108 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS---------------------SSSEEECBSCCCCSCEEEEE
T ss_pred EEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc---------------------cccccccccccccccccccc
Confidence 456689999999999998878999999999999999987 333344444443 3344445
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc--CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce---
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG--HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA--- 316 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~--- 316 (479)
.+... .+++++.++.+++||++.............. .......+.+.+.+. .+++++.||.|++||++.....
T Consensus 109 ~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~ 186 (342)
T d1yfqa_ 109 KYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGT 186 (342)
T ss_dssp EETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCE
T ss_pred ccccc-cccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC-ceeeecCCCcEEEEecccCccccee
Confidence 55554 9999999999999998653321110011111 112223334444444 5666666666666665433100
Q ss_pred ------------------------------------------------e---------eEEecCCCCEEEEEEcCCCCcE
Q 039302 317 ------------------------------------------------L---------MSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 317 ------------------------------------------------~---------~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
. .....|...|++|+|+|++ .+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~ 265 (342)
T d1yfqa_ 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KF 265 (342)
T ss_dssp EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CC
T ss_pred eeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cE
Confidence 0 0002345568999999999 89
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
||+|+.||.|+|||+++.+ .+..+..+ ..+..++|+|++ .+|++++.|+.+++|..-.
T Consensus 266 lasg~~Dg~v~vWD~~~~~----~l~~~~~~-~~~~~~~~s~~~-~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 266 LYTAGSDGIISCWNLQTRK----KIKNFAKF-NEDSVVKIACSD-NILCLATSDDTFKTNAAID 323 (342)
T ss_dssp EEEEETTSCEEEEETTTTE----EEEECCCC-SSSEEEEEEECS-SEEEEEEECTHHHHCSSSC
T ss_pred EEEECCCCEEEEEECCCCc----EEEEecCC-CCCEEEEEEeCC-CEEEEEEcCCcEEEeeeeC
Confidence 9999999999999999887 67777543 344567777754 8899999999888886543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=5.7e-22 Score=190.02 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=177.7
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCc-eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTG-HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.++|.+.|.+++|+|++..++.++..+| .|++||... .....+..|...+.+++|+|
T Consensus 38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~----------------------~~~~~~~~~~~~v~~~~~sp 95 (360)
T d1k32a3 38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT----------------------GKAEKFEENLGNVFAMGVDR 95 (360)
T ss_dssp ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT----------------------CCEEECCCCCCSEEEEEECT
T ss_pred EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC----------------------CcEEEeeCCCceEEeeeecc
Confidence 3589999999999999955555555554 789999976 33456778999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe----------CCCcEEEEEcCCC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS----------VDGNIAIWDTRVG 313 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s----------~dg~I~iwD~~~~ 313 (479)
++. +|++++.++.+++|++.+.... ..+..|...+.+++|+|+++ +|+.++ .++.+++||+.++
T Consensus 96 dg~-~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~ 169 (360)
T d1k32a3 96 NGK-FAVVANDRFEIMTVDLETGKPT----VIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGR 169 (360)
T ss_dssp TSS-EEEEEETTSEEEEEETTTCCEE----EEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred ccc-ccceecccccccccccccccee----eeeecccccccchhhcccee-eeeeeccccccceeeccccceeeeccccC
Confidence 998 9999999999999999876542 33567788899999999999 676543 3456999999986
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC---CceEE-------------------------
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---DSVVA------------------------- 365 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---~~~~~------------------------- 365 (479)
+ ...+..+...+..++|+|++ ..|++++.++.+.+||....... .....
T Consensus 170 ~--~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 246 (360)
T d1k32a3 170 K--IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246 (360)
T ss_dssp E--EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC
T ss_pred c--eeeecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccc
Confidence 4 44556677889999999999 89999999999999987543210 00011
Q ss_pred ---------------------EeecCCCCeEEEEEeCCCC--CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccC
Q 039302 366 ---------------------HFEYHKHPVTSIEWSPHEG--STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVN 422 (479)
Q Consensus 366 ---------------------~~~~h~~~I~~v~~sp~~~--~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 422 (479)
.+..+...+..+.+.+.+. .++++++.++.|++||+...+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----------------- 309 (360)
T d1k32a3 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----------------- 309 (360)
T ss_dssp CCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-----------------
T ss_pred eeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-----------------
Confidence 1111222222223322211 245666678899999987653
Q ss_pred CCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 423 APEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 423 ~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+..|. ..|.+++|+|++. .|++++.|| |++|++.+-
T Consensus 310 ---------~~~~~--~~v~~~~~SpDG~-~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 310 ---------VTEVK--NNLTDLRLSADRK-TVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp ---------EEEEE--EEEEEEEECTTSC-EEEEEETTSCEEEEESSCT
T ss_pred ---------EEEec--CCcCEEEECCCCC-EEEEEECCCeEEEEECCCC
Confidence 22333 2489999999997 556666666 999998665
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=1.1e-19 Score=169.36 Aligned_cols=248 Identities=10% Similarity=0.075 Sum_probs=184.0
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
..+...+.+..++|+|++..++++++.++.|++||+.+ .+.+.++..+. .+..++|++
T Consensus 26 ~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---------------------~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 26 ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---------------------NNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECT
T ss_pred EEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---------------------Cceeeeeeccc-ccccccccc
Confidence 44555667899999999977778888999999999987 56667777665 468999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
++...++++..++.+.+|+..++... . ...+...+.++.|+|++..+++++..++.+.+|+..+.. .+..+. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 156 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVA----G-TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVS-V 156 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEE----E-EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-C
T ss_pred ccccccccccccceeeecccccceee----e-eccccccceEEEeecCCCeeeeeeccccceeeeeccccc-eeeecc-c
Confidence 99856667778889999999775432 1 223455678999999999677788889999999999875 444444 4
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCcEEEEEC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS--ADNQLTIWDL 401 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s--~Dg~I~iwdl 401 (479)
...+..+.++|++..+++++...+.+.+|+..... ....+. +...+..++|++++..+++++. .+++|.+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CCCceEEEeeccccceeeeccccccccccccccee----eeeccc-ccCCcceeeccccccccccccccceeeeeeeeec
Confidence 45688999999995555555556788888887765 455554 3456788999997644433332 3578999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+.+ ++.....+..+.+++|+|++..++++++.++ |.+|++.+.
T Consensus 232 ~t~~-------------------------~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 232 GTNK-------------------------ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TTTE-------------------------EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCe-------------------------EEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 8763 2222222356899999999987888888877 999998654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=1.1e-19 Score=179.66 Aligned_cols=261 Identities=9% Similarity=0.027 Sum_probs=179.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE--E---ecCCCCceEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV--K---FGGHKDEGYA 238 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~h~~~v~~ 238 (479)
.+..| ..+..++|+|+| ++|++++.||+|++||+.+. ++.. . ..+|...+.+
T Consensus 57 ~l~~g-~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~---------------------~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 57 VIDTG-YAVHISRMSASG-RYLLVIGRDARIDMIDLWAK---------------------EPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp EEECC-SSEEEEEECTTS-CEEEEEETTSEEEEEETTSS---------------------SCEEEEEEECCSEEEEEEEC
T ss_pred EEeCC-CCeeEEEECCCC-CEEEEEeCCCCEEEEEccCC---------------------ceeEEEEEeCCCCCcceEEe
Confidence 44444 469999999999 67778899999999999872 2222 2 2345566778
Q ss_pred EEeCCCCCCeE-EEEeCCCeEEEEecCCCCccccCC-------CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 239 IDWNPVAPGRL-VSGDCNSCIHLWEPASDATWNVDP-------NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 239 l~~s~~~~~~l-~sg~~dg~I~lwd~~~~~~~~~~~-------~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
++|+|++. +| +++..++.+.+||..+........ .....+......+.+++++..++.+....+.+.+++.
T Consensus 114 ~~~spDG~-~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 114 KFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeecCCCC-EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 88999998 65 556689999999998764321100 1112344566778888888855555556677878877
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC-------------------------------
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG------------------------------- 359 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~------------------------------- 359 (479)
............+...+..+.|+|++..++++...+..+.+++......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 7665444455667888999999999855555555556666776553321
Q ss_pred -------------------CCceEEEeecCCCCeEEEEEeCCCCCEEEE-------EeCCCcEEEEECCCCCChHHHHHH
Q 039302 360 -------------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAV-------SSADNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 360 -------------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las-------~s~Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
.......+.+|...+..++|+|++ .+|++ ++.|++|+|||+.+....
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~------ 345 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAK------ 345 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTTSC------
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCCcC------
Confidence 013556778899999999999966 77774 556899999999887421
Q ss_pred hhhcccccCCCCCCCCceEE-----ee-cCCCCeeeEEEeCCCCcEEEEEc----CCC-ceEEeeecc
Q 039302 414 KAKTREQVNAPEDLPPQLLF-----IH-QGQKDLKELHWHTQVPGMIVSTA----ADG-FNILMPSNI 470 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~-----~h-~g~~~V~~v~w~p~~~~ll~s~~----~dg-i~iw~~~~~ 470 (479)
.+++. .+ .+...|..++|+|+|..+++|+. .++ |.||+..++
T Consensus 346 ---------------~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 346 ---------------YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp ---------------CEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred ---------------eEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence 01110 11 23346999999999988877762 345 999987765
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.84 E-value=5.5e-20 Score=175.95 Aligned_cols=192 Identities=9% Similarity=-0.016 Sum_probs=155.9
Q ss_pred eEEEEec-CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 173 NRIRAMS-QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 173 ~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
..-.|+| +| +++|+++ .|.|++||+.. .. +..+ +|...|.+++|+|+++ +|++
T Consensus 6 ~~~~fSP~dG-~~~a~~~-~g~v~v~d~~~---------------------~~-~~~~-~~~~~v~~~~~spDg~-~l~~ 59 (360)
T d1k32a3 6 FAEDFSPLDG-DLIAFVS-RGQAFIQDVSG---------------------TY-VLKV-PEPLRIRYVRRGGDTK-VAFI 59 (360)
T ss_dssp GEEEEEECGG-GCEEEEE-TTEEEEECTTS---------------------SB-EEEC-SCCSCEEEEEECSSSE-EEEE
T ss_pred hcccccCCCC-CEEEEEE-CCeEEEEECCC---------------------Cc-EEEc-cCCCCEEEEEECCCCC-EEEE
Confidence 3457999 77 7777765 58999999976 22 3333 6899999999999998 7776
Q ss_pred EeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 252 GDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 252 g~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++.+. .|++||..++.. ..+..|...|.+++|+|+++ +|++++.++.+++|++.+.+ ....+..|...+.+
T Consensus 60 ~~~~~g~~v~v~d~~~~~~-----~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 132 (360)
T d1k32a3 60 HGTREGDFLGIYDYRTGKA-----EKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGK-PTVIERSREAMITD 132 (360)
T ss_dssp EEETTEEEEEEEETTTCCE-----EECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCC
T ss_pred EEcCCCCEEEEEECCCCcE-----EEeeCCCceEEeeeeccccc-ccceeccccccccccccccc-eeeeeecccccccc
Confidence 65443 799999987544 34667899999999999999 99999999999999999886 66677888899999
Q ss_pred EEEcCCCCcEEEEE----------eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 330 ISWNRLASCLLASG----------SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 330 l~~~p~~~~~l~sg----------s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
++|+|++ .+|+.+ ..++.+++||+.... ...+..|...+..+.|+|++ ..|++++.|+.+.+|
T Consensus 133 ~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~ 205 (360)
T d1k32a3 133 FTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSP 205 (360)
T ss_dssp EEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEE
T ss_pred hhhccce-eeeeeeccccccceeeccccceeeeccccCc-----eeeecccccccccccccCCC-CEEEEEeCCCceEcc
Confidence 9999999 677644 344579999998765 44555678889999999965 899999999999999
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
+....
T Consensus 206 d~~~~ 210 (360)
T d1k32a3 206 DRVVL 210 (360)
T ss_dssp CSSSS
T ss_pred ccccc
Confidence 98654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=3e-17 Score=155.04 Aligned_cols=264 Identities=8% Similarity=0.051 Sum_probs=179.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.+.+.|.+.|..|+|+|+|..|++++..++.|++|++...... ........+...+..++|+
T Consensus 30 ~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~------------------~~~~~~~~~~~~p~~l~~s 91 (333)
T d1ri6a_ 30 TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA------------------LTFAAESALPGSLTHISTD 91 (333)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC------------------EEEEEEEECSSCCSEEEEC
T ss_pred EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc------------------EEEeeecccCCCceEEEEc
Confidence 5678899999999999999777788788999999999762110 0111112234467789999
Q ss_pred CCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE--
Q 039302 243 PVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-- 319 (479)
Q Consensus 243 ~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-- 319 (479)
|+++ +|++++ .++.|.+|+......... .....+...+.++.++|+++..++....+..|.+|+..........
T Consensus 92 pDg~-~l~v~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (333)
T d1ri6a_ 92 HQGQ-FVFVGSYNAGNVSVTRLEDGLPVGV--VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 168 (333)
T ss_dssp TTSS-EEEEEETTTTEEEEEEEETTEEEEE--EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred CCCC-EEeecccCCCceeeeccccccceec--ccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec
Confidence 9998 777776 477899998866433221 2233456678889999999944545556678999998876432211
Q ss_pred ---EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec------CCCCeEEEEEeCCCCCEEEEE
Q 039302 320 ---FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY------HKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 320 ---~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~------h~~~I~~v~~sp~~~~~las~ 390 (479)
..........++|++++...+.+....+...+|+................ .......+++++++..+++++
T Consensus 169 ~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~ 248 (333)
T d1ri6a_ 169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 248 (333)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred eeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeec
Confidence 12344567889999999555666667788889987655431222222211 234567889999876667777
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..++.+.+|++..... ...+.........+..++|+|++.+|++++.+++ |.+|++.
T Consensus 249 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 249 RTASLITVFSVSEDGS---------------------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp TTTTEEEEEEECTTSC---------------------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ccCCeEEEEEEcCCCC---------------------EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 7789999999976532 1122222222346889999999987777777666 9999764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=1.5e-17 Score=164.24 Aligned_cols=281 Identities=9% Similarity=-0.025 Sum_probs=179.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE---ecCCCCceEEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK---FGGHKDEGYAID 240 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~ 240 (479)
.+..| ..+..++|+|+| +++++++.||.|++||+.+.. ...... ..+|...+.+.+
T Consensus 57 ~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~-------------------~~~~~~i~~~~~~~~~~~s~~ 115 (432)
T d1qksa2 57 VLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKE-------------------PTTVAEIKIGSEARSIETSKM 115 (432)
T ss_dssp EEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSS-------------------CCEEEEEECCSEEEEEEECCS
T ss_pred EEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCC-------------------ceEEEEEecCCCCCCeEEecc
Confidence 34444 469999999999 677788999999999997621 111222 234555667778
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccC-------CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-------PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
|+|+++.++++++.++.|+|||..++...... ......+......+.++|++..++++.+.++.|.+||..+.
T Consensus 116 ~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~ 195 (432)
T d1qksa2 116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195 (432)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred cCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC
Confidence 88999833578888999999999876542210 01122356678889999999966778888999999999887
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-------------------------
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE------------------------- 368 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~------------------------- 368 (479)
+........+...+..+.|+|++..+++++..++.+.++|.++... +..+.
T Consensus 196 ~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 271 (432)
T d1qksa2 196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL----VAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271 (432)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE----EEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceE----EEEeccCccccccCcccceecCCCCceecc
Confidence 5333233345667899999999954556666677899999876541 11110
Q ss_pred -------------------cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhh-hcccc-cCCCCCC
Q 039302 369 -------------------YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKA-KTREQ-VNAPEDL 427 (479)
Q Consensus 369 -------------------~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~-~~~~~-~~~~~~~ 427 (479)
.|...|....++|. +..+++++.++..++|................ ..... .....+.
T Consensus 272 ~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~-g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~ 350 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 350 (432)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred cccCCceEEecccccccccccccEEEEEEEcCC-CCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCC
Confidence 12234566667774 46788888888888998765543221111000 00000 0011111
Q ss_pred CCceEE------eecCCCCeeeEEEeCCCCcEEEEEc----CCC-ceEEeeecc
Q 039302 428 PPQLLF------IHQGQKDLKELHWHTQVPGMIVSTA----ADG-FNILMPSNI 470 (479)
Q Consensus 428 p~~l~~------~h~g~~~V~~v~w~p~~~~ll~s~~----~dg-i~iw~~~~~ 470 (479)
...+.- ...++..|..++|+|+|..+++|.- .+| |.||+..++
T Consensus 351 ~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 351 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred ceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence 111110 0123456889999999988877763 344 888887666
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=9.8e-18 Score=158.31 Aligned_cols=239 Identities=10% Similarity=0.002 Sum_probs=161.0
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----ceEEEEeC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-----EGYAIDWN 242 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~s 242 (479)
+...+..++|+|+|..++++++.++.|.+||+.+ .+.+..+..+.. .+..++|+
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---------------------~~~~~~~~~~~~~~~~~~~~~v~~s 90 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------GETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---------------------CCEEEEEECCBTTEEEECTTCEEEC
T ss_pred CCCCccEEEECCCCCEEEEEECCCCeEEEEECCC---------------------CcEEEEEecCCCcccccceeeEEEc
Confidence 4466889999999977778888999999999987 455555554432 45579999
Q ss_pred CCCCCeEEEEe------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 243 PVAPGRLVSGD------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 243 ~~~~~~l~sg~------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
|++. +++++. .++.+.+||..+..... .+ .+...+..++|+|++. ++++++ +.+.+||.
T Consensus 91 ~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~-~~~~~~~~~~~s~dg~-~l~~~~--~~~~~~d~ 161 (337)
T d1pbyb_ 91 PDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK----AF-EAPRQITMLAWARDGS-KLYGLG--RDLHVMDP 161 (337)
T ss_dssp TTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE----EE-ECCSSCCCEEECTTSS-CEEEES--SSEEEEET
T ss_pred CCCc-EEEEeecCCcceeeeccccccceeeccccCCeEEE----ec-cccCCceEEEEcCCCC-EEEEEc--CCcceeee
Confidence 9998 777765 35678888887654321 12 2345678899999999 666665 45788999
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCC-----------------------cEEEEEeCCCeEEEEeCCCCCCCCceEEEe
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLAS-----------------------CLLASGSDDGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~-----------------------~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
.+.+ ....+..+.. .....+.+++. ..+..++.++.+.+||+..+.. ....+
T Consensus 162 ~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 236 (337)
T d1pbyb_ 162 EAGT-LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREV 236 (337)
T ss_dssp TTTE-EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEE
T ss_pred ecCc-EEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE---EEEEe
Confidence 8874 3333322211 11111111110 1112223345789999988763 44556
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe
Q 039302 368 EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH 447 (479)
Q Consensus 368 ~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~ 447 (479)
..+...+..+.++|++ .+++++ ++.|++||+.+.. ++........+.+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~-------------------------~~~~~~~~~~~~~~~~s 288 (337)
T d1pbyb_ 237 RIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------------------------SIKRVPLPHSYYSVNVS 288 (337)
T ss_dssp EECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------------------------EEEEEECSSCCCEEEEC
T ss_pred cCCCcceEEEEecccc-eEEEEc--cccEEEEECCCCc-------------------------EEEEEcCCCCEEEEEEC
Confidence 6788889999999965 666655 5899999998873 22222223468999999
Q ss_pred CCCCcEEEEEcCCC-ceEEeeecc
Q 039302 448 TQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 448 p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|++.. |++++.++ |.||++.++
T Consensus 289 ~dG~~-l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 289 TDGST-VWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTSCE-EEEESBSSEEEEEETTTC
T ss_pred CCCCE-EEEEeCCCcEEEEECCCC
Confidence 99974 45556666 999998765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=1e-17 Score=165.29 Aligned_cols=204 Identities=9% Similarity=0.014 Sum_probs=149.8
Q ss_pred EEEecCCC-cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe
Q 039302 175 IRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 175 v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
+.+..+.. .++++.+.||+|+|||+.+ .+.+.++..|. .+.+++|+|+|+ +|++++
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t---------------------~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~ 80 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDS---------------------KKIVKVIDTGY-AVHISRMSASGR-YLLVIG 80 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTT---------------------CSEEEEEECCS-SEEEEEECTTSC-EEEEEE
T ss_pred ccccCCCCeEEEEEEcCCCEEEEEECCC---------------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEe
Confidence 34444433 4568889999999999987 78888898775 689999999998 999999
Q ss_pred CCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC---------
Q 039302 254 CNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH--------- 323 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h--------- 323 (479)
.||+|++||+.+++.... ......+|...+.+++|+|+|+.+++++..++.+++||..+.. +...+..|
T Consensus 81 ~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~ 159 (426)
T d1hzua2 81 RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTY 159 (426)
T ss_dssp TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCE
T ss_pred CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceee
Confidence 999999999988654221 1123446777788889999999666777789999999999875 44444433
Q ss_pred --CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 324 --NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 324 --~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
......+.+++++..++.+....+.+.+++...... .......+...+..+.|+|++..++++...++.+.+|++
T Consensus 160 ~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~ 236 (426)
T d1hzua2 160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN---LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS 236 (426)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS---CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc---eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence 334456667777755555555566777777666553 344555688899999999977555566666778999998
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
....
T Consensus 237 ~~~~ 240 (426)
T d1hzua2 237 KDRR 240 (426)
T ss_dssp TTTE
T ss_pred cccc
Confidence 8654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.76 E-value=5.7e-16 Score=143.70 Aligned_cols=265 Identities=14% Similarity=0.105 Sum_probs=182.1
Q ss_pred CCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCC
Q 039302 50 EGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNK 129 (479)
Q Consensus 50 ~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~ 129 (479)
.+..-.+|..-...+....+.--...+.+-||.. ..++++ ..++.|.+|++.
T Consensus 11 ~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~----------~l~v~~-----~~~~~i~v~d~~------------- 62 (301)
T d1l0qa2 11 SDNISVIDVTSNKVTATIPVGSNPMGAVISPDGT----------KVYVAN-----AHSNDVSIIDTA------------- 62 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS----------EEEEEE-----GGGTEEEEEETT-------------
T ss_pred CCEEEEEECCCCeEEEEEECCCCceEEEEeCCCC----------EEEEEE-----CCCCEEEEEECC-------------
Confidence 3444455555555555555543334666667632 223454 356789999773
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccccccc
Q 039302 130 PATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAES 209 (479)
Q Consensus 130 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 209 (479)
.......+..| ..+..+.+++++..+++++..++.+.+|+...
T Consensus 63 ----------------------------t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 105 (301)
T d1l0qa2 63 ----------------------------TNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-------- 105 (301)
T ss_dssp ----------------------------TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------
T ss_pred ----------------------------CCceeeeeecc-ccccccccccccccccccccccceeeeccccc--------
Confidence 11222233344 45789999999988888888999999999987
Q ss_pred ccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC
Q 039302 210 ETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 289 (479)
.+....+.. .....++.|+|++...++++..++.+.+|+..+..... ...+...+..+.++
T Consensus 106 -------------~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 166 (301)
T d1l0qa2 106 -------------NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-----TVSVGRSPKGIAVT 166 (301)
T ss_dssp -------------TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-----EEECCSSEEEEEEC
T ss_pred -------------ceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceee-----ecccCCCceEEEee
Confidence 445555554 44678999999998455677778899999997754322 22334568899999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEe
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
|++..+++++...+.+.+|+..... ..... .....+..++|++++..+++++. .++.|++||+.+.+ .+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~----~~~~~ 240 (301)
T d1l0qa2 167 PDGTKVYVANFDSMSISVIDTVTNS-VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK----ITARI 240 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE-EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE----EEEEE
T ss_pred ccccceeeeccccccccccccccee-eeecc-cccCCcceeeccccccccccccccceeeeeeeeecCCCe----EEEEE
Confidence 9998445555556777788777653 33333 34456788999999954444433 34689999999887 67777
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 368 EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 368 ~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.. ...+++++|+|++..++++++.|++|++||+.+.+
T Consensus 241 ~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 241 PV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 65 45679999999774455788889999999998773
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.6e-16 Score=156.83 Aligned_cols=195 Identities=10% Similarity=-0.022 Sum_probs=151.1
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
.++++.+.+|+|.|||..+ .+.+.++..|. .+..++|+|+++ +|++++.||.|.+||
T Consensus 33 ~~~v~~~d~g~v~v~D~~t---------------------~~v~~~~~~g~-~~~~v~fSpDG~-~l~~~s~dg~v~~~d 89 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGST---------------------YEIKTVLDTGY-AVHISRLSASGR-YLFVIGRDGKVNMID 89 (432)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------CCEEEEEECSS-CEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCC---------------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEcCCCCEEEEE
Confidence 4568999999999999987 78888888764 699999999998 999999999999999
Q ss_pred cCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec-----------CCCCEEEE
Q 039302 263 PASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-----------HNADVNVI 330 (479)
Q Consensus 263 ~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~-----------h~~~v~~l 330 (479)
+.+.+.... ......+|.+.+.+..|+|+|+.++++++.+++|+|||..+++ ++..+.. +......+
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (432)
T d1qksa2 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAI 168 (432)
T ss_dssp TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEE
T ss_pred eeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEE
Confidence 987653221 1122345666777788899999667899999999999999875 4444332 34567789
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.++|++..++++...++.|.+||....+ ...... .+...+..++|+|++..+++++..++.|.++|.....
T Consensus 169 ~~s~dg~~~~vs~~~~~~i~~~d~~~~~----~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~ 240 (432)
T d1qksa2 169 LASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240 (432)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred EECCCCCEEEEEEccCCeEEEEEccCCC----cceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence 9999997777888899999999998776 333222 3566789999999774445555557789999987653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=4.1e-15 Score=140.47 Aligned_cols=246 Identities=11% Similarity=0.007 Sum_probs=159.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC------CceE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK------DEGY 237 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~v~ 237 (479)
..++|...+..+.|+|++..++++++.++.|++||+.+ .+.+..+.... ..+.
T Consensus 34 ~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t---------------------~~~~~~~~~~~~~~~~~~~~~ 92 (346)
T d1jmxb_ 34 CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---------------------CKNTFHANLSSVPGEVGRSMY 92 (346)
T ss_dssp EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEESCCSTTEEEECSS
T ss_pred EEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc---------------------CeeeeeecccccccccCCceE
Confidence 34567778899999999977888888999999999987 23333332211 2356
Q ss_pred EEEeCCCCCCeEEEEe------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 238 AIDWNPVAPGRLVSGD------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
.++|+|++. +|++++ .++.+.+|+..++..... .........+..+.+++++. ++++ ++.+
T Consensus 93 ~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~ 165 (346)
T d1jmxb_ 93 SFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMPRQVYLMRAADDGS-LYVA---GPDI 165 (346)
T ss_dssp CEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECCSSCCCEEECTTSC-EEEE---SSSE
T ss_pred EEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeE--EEeeeccCceEEEEecCCCE-EEEe---CCcc
Confidence 799999998 776654 467888998876433211 11111223455667777776 5544 3568
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCC-------------------------cEEEEEeCCCeEEEEeCCCCCCC
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLAS-------------------------CLLASGSDDGTFSIHDLRLLKGG 360 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------------------------~~l~sgs~dg~i~iwDlr~~~~~ 360 (479)
.+|++.+.+ .+..+..+. ....+.++|++. ..++++..++.+.+||+.+...
T Consensus 166 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (346)
T d1jmxb_ 166 YKMDVKTGK-YTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT- 242 (346)
T ss_dssp EEECTTTCC-EEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE-
T ss_pred eEEEccCCC-EEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce-
Confidence 999998875 444443322 222333333331 3344445566788888887763
Q ss_pred CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCC
Q 039302 361 DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKD 440 (479)
Q Consensus 361 ~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~ 440 (479)
....+..|...+.++.++|++.. ++... ++.|.+||+...+ ++........
T Consensus 243 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~-------------------------~~~~~~~~~~ 293 (346)
T d1jmxb_ 243 --HTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRK-------------------------LIKAANLDHT 293 (346)
T ss_dssp --EEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTE-------------------------EEEEEECSSC
T ss_pred --EEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCc-------------------------EEEEEcCCCC
Confidence 44556678889999999997744 44444 4679999998763 2322222246
Q ss_pred eeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 441 LKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+.+++|+|++..+++ ++.++ |.||++.+.
T Consensus 294 ~~~va~s~DG~~l~v-~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 294 YYCVAFDKKGDKLYL-GGTFNDLAVFNPDTL 323 (346)
T ss_dssp CCEEEECSSSSCEEE-ESBSSEEEEEETTTT
T ss_pred EEEEEEcCCCCEEEE-EeCCCcEEEEECccC
Confidence 999999999975554 55566 999999765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.60 E-value=1.3e-12 Score=124.96 Aligned_cols=238 Identities=12% Similarity=0.011 Sum_probs=150.7
Q ss_pred eEEEEecCCCcEEEEE---------eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce-------
Q 039302 173 NRIRAMSQNPHICASW---------ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG------- 236 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~---------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v------- 236 (479)
..+.|+|+|..+.++. +.++.|.|||..+ .+++..+..+....
T Consensus 69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t---------------------~~~~~~~~~~~~~~~~~~~~~ 127 (373)
T d2madh_ 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCC---------------------CcEEEEEecCCcceeEeccCC
Confidence 3799999995554442 3467899999987 44555554444333
Q ss_pred EEEEeCCCCCCeEEEE--eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 237 YAIDWNPVAPGRLVSG--DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg--~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
..+.|++++. .++.. ..++.+.+|+..... ...+...+.++.|+|++...+++.+.|+.+.+||.....
T Consensus 128 ~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~ 198 (373)
T d2madh_ 128 WMNANTPNNA-DLLFFQFAAGPAVGLVVQGGSS--------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA 198 (373)
T ss_pred CcEEEEeCCC-cEEEEEEcCCCceEEeeccCCe--------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence 3467777776 43333 345677788775532 233445567899999999888999999999999998875
Q ss_pred ceeeEEec------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC----------CeEEEE
Q 039302 315 SALMSFKA------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH----------PVTSIE 378 (479)
Q Consensus 315 ~~~~~~~~------h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~----------~I~~v~ 378 (479)
....... .......+.+.+++ .++..+.++.+.+|+...... ..+.....+.. ....++
T Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (373)
T d2madh_ 199 -AGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGA--TNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred -eeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeE--EEEEeeccccCcEEeeeeccCcceeeE
Confidence 2222221 12223445555544 556667889999999887641 11222222222 223345
Q ss_pred EeCCCC---------CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCC
Q 039302 379 WSPHEG---------STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449 (479)
Q Consensus 379 ~sp~~~---------~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~ 449 (479)
++|++. ..+++...++.|.+||+...+. +........+..++|+|+
T Consensus 274 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~-------------------------~~~~~~~~~~~~~a~spD 328 (373)
T d2madh_ 274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-------------------------SSQISLGHDVDAISVAQD 328 (373)
T ss_pred EecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE-------------------------EEEecCCCCeeEEEECCC
Confidence 555332 3345556677889999887741 222222346899999999
Q ss_pred CCcE-EEEEcCCC-ceEEeeecc
Q 039302 450 VPGM-IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 450 ~~~l-l~s~~~dg-i~iw~~~~~ 470 (479)
+..+ +++++.++ |.||++.+.
T Consensus 329 G~~~l~vt~~~d~~v~v~D~~tg 351 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEEeCCCCeEEEEECCCC
Confidence 9764 56777777 999998765
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1e-13 Score=130.18 Aligned_cols=241 Identities=10% Similarity=0.092 Sum_probs=159.0
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE-EEEeCCCeEEEE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL-VSGDCNSCIHLW 261 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l-~sg~~dg~I~lw 261 (479)
.++++++.+++|+||+++... ...+.....|.+.+..|+|+|+++ +| +++..|+.|++|
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~-------------------~l~~~~~~~~~~~v~~la~spDG~-~L~v~~~~d~~i~~~ 64 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEG-------------------ALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAY 64 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-------------------CEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEE
T ss_pred EEEEECCCCCcEEEEEEcCCC-------------------CeEEEEEEcCCCCEeEEEEeCCCC-EEEEEECCCCeEEEE
Confidence 466788999999999998621 111222235778899999999998 76 455568999999
Q ss_pred ecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcE
Q 039302 262 EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 262 d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
++........ ......+...+..++|+|+++ ++++++ .++.|.+|+...... .......+...+.++.++|++..+
T Consensus 65 ~i~~~~~~~~-~~~~~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~ 142 (333)
T d1ri6a_ 65 RIAPDDGALT-FAAESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL 142 (333)
T ss_dssp EECTTTCCEE-EEEEEECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred EEeCCCCcEE-EeeecccCCCceEEEEcCCCC-EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence 9976443211 111122345577899999999 555554 678999998876642 223335566778899999999444
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEE-----eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHh
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAH-----FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFK 414 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~-----~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~ 414 (479)
++....+..|.+|+...... .... ...+......+.|++.+...+.+....+...+|++......
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 212 (333)
T d1ri6a_ 143 WVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN------- 212 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSC---EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC-------
T ss_pred eccccccceeeEEEeccCCc---ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc-------
Confidence 55555667899999877653 1111 12244567889999977555555566778889987654311
Q ss_pred hhcccccCCCCCCCCceE-Ee------ecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 415 AKTREQVNAPEDLPPQLL-FI------HQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 415 ~~~~~~~~~~~~~p~~l~-~~------h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.... .. ..+......+++++++..+++++..++ +.+|.+..
T Consensus 213 --------------~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 261 (333)
T d1ri6a_ 213 --------------IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 261 (333)
T ss_dssp --------------CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred --------------eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence 0000 11 112234678899999987777777666 88887654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.50 E-value=3.3e-13 Score=127.00 Aligned_cols=239 Identities=10% Similarity=-0.095 Sum_probs=153.2
Q ss_pred EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCCCCeEEEEe
Q 039302 175 IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
+++++++ .++++++.+++|+|||+.+ .+.+.++. .|.....+++|+|++...++++.
T Consensus 2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t---------------------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~ 59 (346)
T d1jmxb_ 2 PALKAGH-EYMIVTNYPNNLHVVDVAS---------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59 (346)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTT---------------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccCCCCC-cEEEEEcCCCEEEEEECCC---------------------CCEEEEEEcCCCCCcceEEECCCCCEEEEEEC
Confidence 3577877 7899999999999999987 56677776 35567889999999983346677
Q ss_pred CCCeEEEEecCCCCccccC--CCCcccCCCcEEEEEECCCCCcEEEEEe------------CCCcEEEEEcCCCCce-ee
Q 039302 254 CNSCIHLWEPASDATWNVD--PNPFIGHAASVEDLQWSPTESDVFASCS------------VDGNIAIWDTRVGKSA-LM 318 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s------------~dg~I~iwD~~~~~~~-~~ 318 (479)
.++.|++||+.++...... ......+...+..++|+|+++ .+++++ .++.+.+||..++... ..
T Consensus 60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 138 (346)
T d1jmxb_ 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138 (346)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence 8999999999876432110 111122233466799999998 554443 4778999998876421 11
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE---------
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV--------- 389 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las--------- 389 (479)
........+..+.+++++ .+++++ +.+.+|++.+.. .+..+..+. ....+.++|++..++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (346)
T d1jmxb_ 139 RTFPMPRQVYLMRAADDG-SLYVAG---PDIYKMDVKTGK----YTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSM 209 (346)
T ss_dssp EEEECCSSCCCEEECTTS-CEEEES---SSEEEECTTTCC----EEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred EeeeccCceEEEEecCCC-EEEEeC---CcceEEEccCCC----EEEEEecCC-CccceEEeccccEEEEEecCCCceEe
Confidence 122233456667777777 555543 568999998877 666666543 23444455544333233
Q ss_pred ----------------EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 390 ----------------SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 390 ----------------~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
+..+..+.+|++.... ........+...+..+.+++.+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~- 265 (346)
T d1jmxb_ 210 LYTIARFKDDKQDPATADLLYGYLSVDLKTGK-----------------------THTQEFADLTELYFTGLRSPKDPN- 265 (346)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCC-----------------------EEEEEEEECSSCEEEEEECSSCTT-
T ss_pred eeeeeeeccCceeEeeccCCceEEEEECCCCc-----------------------eEEEEeecccceeEEEEEeCCCCE-
Confidence 3334445555555442 122333333456889999998864
Q ss_pred EEEEcCCCceEEeeec
Q 039302 454 IVSTAADGFNILMPSN 469 (479)
Q Consensus 454 l~s~~~dgi~iw~~~~ 469 (479)
+++...+.+.+|++.+
T Consensus 266 ~~~~~~~~v~v~d~~~ 281 (346)
T d1jmxb_ 266 QIYGVLNRLAKYDLKQ 281 (346)
T ss_dssp EEEEEESEEEEEETTT
T ss_pred EEEecCCeEEEEECCC
Confidence 4555666688887644
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=4e-13 Score=127.48 Aligned_cols=239 Identities=11% Similarity=0.024 Sum_probs=142.7
Q ss_pred ceeEEEEecCCCcEEEE---------EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-------C
Q 039302 171 CVNRIRAMSQNPHICAS---------WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-------D 234 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat---------~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~ 234 (479)
.+..++|+|++..+.++ ++.++.|++||... .+++..+..+. .
T Consensus 48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t---------------------~~~~~~~~~~~~~~~~~~~ 106 (355)
T d2bbkh_ 48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---------------------LLPTADIELPDAPRFLVGT 106 (355)
T ss_dssp SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---------------------CCEEEEEEETTCCCCCBSC
T ss_pred CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC---------------------CCEEEEEecCCcceeecCC
Confidence 44479999999666554 34578999999987 33333332221 2
Q ss_pred ceEEEEeCCCCCCeEEEEe--CCCeEEEEecCCCCccccCCCCcccCC-------CcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 235 EGYAIDWNPVAPGRLVSGD--CNSCIHLWEPASDATWNVDPNPFIGHA-------ASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~--~dg~I~lwd~~~~~~~~~~~~~~~~h~-------~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
....++|++++. +++.++ .+..+.+|+..++..... +..+. .....+.+++++..+++....++.+
T Consensus 107 ~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~ 181 (355)
T d2bbkh_ 107 YPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRM----LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 181 (355)
T ss_dssp CGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEE----EECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeE----EecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeE
Confidence 345689999998 666654 467899999977543211 11111 1122344455544333333334444
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC----------CCeE
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK----------HPVT 375 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~----------~~I~ 375 (479)
.+++..... ..+...+....+.+.+ ..++.++.++.+++|++..... ..+.....+. ....
T Consensus 182 ~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~ 252 (355)
T d2bbkh_ 182 EITHTEVFH------PEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQ 252 (355)
T ss_dssp EEEECCCCS------CTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSS
T ss_pred EEEeccccc------ceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcE--EEEeccCCcccceEeeeeeccceE
Confidence 444433321 1233345556777777 6788889999999999987752 1111222221 2334
Q ss_pred EEEEeCCCCCEEEEEeCC----------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEE
Q 039302 376 SIEWSPHEGSTLAVSSAD----------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH 445 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~D----------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~ 445 (479)
.++++|++ ..++..+.+ +.|.+||+.+.+.. . ...+. ..+.+++
T Consensus 253 ~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~----------------------~-~~~~~--~~~~~~a 306 (355)
T d2bbkh_ 253 QVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL----------------------A-KFEMG--HEIDSIN 306 (355)
T ss_dssp CEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----------------------E-EEEEE--EEECEEE
T ss_pred EEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCCCcEE----------------------E-EecCC--CCEEEEE
Confidence 58888866 554444332 36999999877411 1 11122 3588999
Q ss_pred EeCCCCc-EEEEEcCCC-ceEEeeecc
Q 039302 446 WHTQVPG-MIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 446 w~p~~~~-ll~s~~~dg-i~iw~~~~~ 470 (479)
|+|++.. ++++++.++ |.||++.+.
T Consensus 307 ~spDG~~~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 307 VSQDEKPLLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EcCCCCeEEEEEECCCCEEEEEECCCC
Confidence 9999875 566777677 999987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.47 E-value=7.4e-11 Score=112.41 Aligned_cols=291 Identities=11% Similarity=-0.009 Sum_probs=172.3
Q ss_pred CCeeecCCccc-CCCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecC-----CCCCCceE
Q 039302 37 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQA-----EKPSWNSI 110 (479)
Q Consensus 37 ~~~~~~~~~~~-~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~-----~~~~~n~i 110 (479)
..++|...... -..+....+|......+.......+. .+-|-||.. +|.+.... .+...+.|
T Consensus 32 g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~-~~a~SpDG~-----------~l~va~~~~~~~~~~~~~~~v 99 (373)
T d2madh_ 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGS-----------EFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc-cEEEcCCCC-----------EEEEEeecCCcccccccceEE
Confidence 35566543221 23455666776666666665555544 466777743 23332221 13467889
Q ss_pred EEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEE-EEEe
Q 039302 111 GVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHIC-ASWA 189 (479)
Q Consensus 111 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~l-at~s 189 (479)
.||+............ ...+.. .... ....+.|++++..++ +...
T Consensus 100 ~v~D~~t~~~~~~~~~-----------------------------~~~~~~--~~~~---~~~~~~~s~dg~~~~v~~~~ 145 (373)
T d2madh_ 100 EVFDPVTFLPIADIEL-----------------------------PDAPRF--DVGP---YSWMNANTPNNADLLFFQFA 145 (373)
T ss_pred EEEECCCCcEEEEEec-----------------------------CCccee--Eecc---CCCcEEEEeCCCcEEEEEEc
Confidence 9998853221111000 000011 1111 224578888885443 3334
Q ss_pred CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc
Q 039302 190 DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW 269 (479)
Q Consensus 190 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~ 269 (479)
.++.+.+|+... .+.. .+.....++.++|++...+++.+.|+.+.+|+.......
T Consensus 146 ~~~~~~~~~~~~---------------------~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 146 AGPAVGLVVQGG---------------------SSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred CCCceEEeeccC---------------------CeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence 567788888765 2222 233346688999999867789999999999998775442
Q ss_pred ccCCCCc--ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEecC----------CCCEEEEEEcCCC
Q 039302 270 NVDPNPF--IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFKAH----------NADVNVISWNRLA 336 (479)
Q Consensus 270 ~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~~h----------~~~v~~l~~~p~~ 336 (479)
....... .++......+.+.+++ .++..+.++.+.+|+....... ......+ ......+++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 278 (373)
T d2madh_ 201 AGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred EEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC
Confidence 2211111 1222234455566655 4667778999999998876421 1111111 1223344555554
Q ss_pred C---------cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCC
Q 039302 337 S---------CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS-TLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 337 ~---------~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~-~las~s~Dg~I~iwdl~~~~ 405 (479)
. ..+++...++.+.+||+.+++ .+..+. +...+..++|+|++.. ++++++.|++|+|||+.+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~----~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CeEEEecCCCceEEeecCCCeEEEEECCCCc----EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 2 344566777889999999887 666665 5678899999997644 45788999999999999885
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=5.1e-12 Score=118.20 Aligned_cols=201 Identities=11% Similarity=0.060 Sum_probs=135.0
Q ss_pred cceeEEEEecCCCcEEEEEe-----------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 170 GCVNRIRAMSQNPHICASWA-----------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s-----------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
..+..++|+|++..++++.. .++.+.+||... ...+..+.. ...+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~---------------------~~~~~~~~~-~~~~~~ 139 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET---------------------LSRRKAFEA-PRQITM 139 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---------------------TEEEEEEEC-CSSCCC
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC---------------------CeEEEeccc-cCCceE
Confidence 34667899999955544432 456788888876 445555553 456889
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC-CCCc---------------cc-CC--CcEEEEEECCCCCcEEEEE
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-PNPF---------------IG-HA--ASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-~~~~---------------~~-h~--~~V~~l~~sp~~~~~l~s~ 299 (479)
++|+|++. ++++++. .+.+||..+....... .... .. +. ..+.......... .+..+
T Consensus 140 ~~~s~dg~-~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 215 (337)
T d1pbyb_ 140 LAWARDGS-KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID-PADPT 215 (337)
T ss_dssp EEECTTSS-CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC-TTSGG
T ss_pred EEEcCCCC-EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccc-eeeec
Confidence 99999998 8888764 4778988764321100 0000 00 00 0111111111111 12233
Q ss_pred eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 300 s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
+.++.+.+||+..+......+..+...+..+.+++++ .+++++ ++.|++||+.+.+ .+..+. +...+.+++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~----~~~~~~-~~~~~~~~~~ 287 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA----SIKRVP-LPHSYYSVNV 287 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE----EEEEEE-CSSCCCEEEE
T ss_pred ccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCCc----EEEEEc-CCCCEEEEEE
Confidence 4456799999998865555567788889999999998 666655 5899999999987 676665 5677899999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|++ .+|++++.|+.|+|||+.+.+
T Consensus 288 s~dG-~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 288 STDG-STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CTTS-CEEEEESBSSEEEEEETTTCC
T ss_pred CCCC-CEEEEEeCCCcEEEEECCCCc
Confidence 9965 899999999999999998874
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=5e-09 Score=94.73 Aligned_cols=210 Identities=9% Similarity=0.060 Sum_probs=126.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
..+...+..-+|+|+|..|+.+....+...+|.+.. .......+..+........|+|++
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~spdg 94 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL--------------------ANGAVRQVASFPRHNGAPAFSPDG 94 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--------------------TTCCEEEEECCSSCEEEEEECTTS
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeec--------------------ccCceeEEeeeecccccceecCCC
Confidence 345677889999999977766666665545554433 123344566677888999999999
Q ss_pred CCeEEE-EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 246 PGRLVS-GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 246 ~~~l~s-g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
. .|+. ....+...++......... ..............+++.+...+++...+|...||..............+.
T Consensus 95 ~-~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 170 (269)
T d2hqsa1 95 S-KLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 170 (269)
T ss_dssp S-EEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred C-eeeEeeecCCccceeecccccccc---eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccc
Confidence 8 5554 4344443333332222111 112223444556678888876677766677655554433322334445556
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCcEEEEEC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA---DNQLTIWDL 401 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~---Dg~I~iwdl 401 (479)
.......|+|++..++.+....+...+|....... .. ....+........|+|++ ..|+-.+. ...|+++++
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~~-~~~~~~~~~~~p~~SPDG-~~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GV-QVLSSTFLDETPSLAPNG-TMVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CE-EECCCSSSCEEEEECTTS-SEEEEEEEETTEEEEEEEET
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccc---cc-eEeecCccccceEECCCC-CEEEEEEcCCCCcEEEEEEC
Confidence 67788899999955555555666655555444332 22 333456677889999976 55543333 346788888
Q ss_pred CCC
Q 039302 402 SLE 404 (479)
Q Consensus 402 ~~~ 404 (479)
...
T Consensus 246 dg~ 248 (269)
T d2hqsa1 246 DGR 248 (269)
T ss_dssp TSC
T ss_pred CCC
Confidence 755
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.24 E-value=6.3e-10 Score=109.82 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=77.2
Q ss_pred ecCCcceeEEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
..|...|.++.|+|++. .||.++ .++.+.|||+.. .+ +..+..|...+
T Consensus 58 ~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~~---------------------~~-~~~l~~~~~~~ 114 (470)
T d2bgra1 58 DEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNK---------------------RQ-LITEERIPNNT 114 (470)
T ss_dssp TTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTT---------------------TE-ECCSSCCCTTE
T ss_pred hhccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEEECCC---------------------Cc-ccccccCCccc
Confidence 35667899999999995 445443 357889999987 22 34466788889
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCC-----cc---------cCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNP-----FI---------GHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~-----~~---------~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
..+.|||+|. .||... ++.+++|+..++......... +. ...+....+.|+|+|+ .|+....|
T Consensus 115 ~~~~~SPDG~-~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~~d 191 (470)
T d2bgra1 115 QWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFN 191 (470)
T ss_dssp EEEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEE
T ss_pred cccccccCcc-eeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCC-ccceeEec
Confidence 9999999998 888865 779999998876543211100 01 1223446688999999 77776543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.24 E-value=5.3e-10 Score=105.37 Aligned_cols=198 Identities=14% Similarity=0.056 Sum_probs=122.4
Q ss_pred ceeEEEEecCCCcEEEE-EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-------ceEEEEeC
Q 039302 171 CVNRIRAMSQNPHICAS-WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-------EGYAIDWN 242 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat-~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~s 242 (479)
....+.|+|++..+++. .+.+..+.+|+... .+.+..+..+.. ....+.++
T Consensus 107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
T d2bbkh_ 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---------------------KAFKRMLDVPDCYHIFPTAPDTFFMHC 165 (355)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTT---------------------TEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred CCceEEEecCCCeeEEecCCCCceeeeeecCC---------------------CcEeeEEecCCcceEeecCCcceEEEc
Confidence 45678999999554433 24567899999987 333344433221 22234455
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee-EEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM-SFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~-~~~ 321 (479)
+++..+++....++.+.+++.... ...+...+....+.+.+. .++.++.++.+.+|++..+..... ...
T Consensus 166 ~dg~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 235 (355)
T d2bbkh_ 166 RDGSLAKVAFGTEGTPEITHTEVF---------HPEDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVE 235 (355)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCC---------SCTTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred CCCCEEEEEecCCCeEEEEecccc---------cceecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccC
Confidence 555422222333344444443321 122334455567777777 788899999999999988752111 111
Q ss_pred cC----------CCCEEEEEEcCCCCcEEEEEeCC----------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 322 AH----------NADVNVISWNRLASCLLASGSDD----------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 322 ~h----------~~~v~~l~~~p~~~~~l~sgs~d----------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
.+ ......+++++++ ..++....+ ..|.+||+.+.+ .+..+.. ...+.+++|+|
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~----~~~~~~~-~~~~~~~a~sp 309 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----RLAKFEM-GHEIDSINVSQ 309 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEE-EEEECEEEECC
T ss_pred CcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCCCc----EEEEecC-CCCEEEEEEcC
Confidence 11 1233457889988 444443322 369999999887 6776654 45688999999
Q ss_pred CCCC-EEEEEeCCCcEEEEECCCCC
Q 039302 382 HEGS-TLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 382 ~~~~-~las~s~Dg~I~iwdl~~~~ 405 (479)
++.. ++++++.|+.|.+||+.+++
T Consensus 310 DG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 310 DEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCeEEEEEECCCCEEEEEECCCCC
Confidence 7644 46677789999999998874
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.12 E-value=1.2e-09 Score=103.98 Aligned_cols=236 Identities=10% Similarity=-0.029 Sum_probs=140.5
Q ss_pred eEEEEecCCCcEEEEE---------eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-------Cce
Q 039302 173 NRIRAMSQNPHICASW---------ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-------DEG 236 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~---------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v 236 (479)
..++|+|++..+.++. +.++.|.+||..+ .+++..+..+. ...
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t---------------------~~~~~~i~~p~~~~~~~g~~p 126 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---------------------CCEEEEEEETTSCSCCBSCCT
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC---------------------CcEeeeecCCccceecccCCc
Confidence 3689999995555432 3467899999987 34444443222 123
Q ss_pred EEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 237 YAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
..++|+|+++ +|+++. .++.|.+||+.+.+.... +..+... .+.|.+...+++.+.||.+.++++.....
T Consensus 127 ~~~a~SpDGk-~l~va~~~~~~v~~~d~~~~~~~~~----~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~ 197 (368)
T d1mdah_ 127 HIIGNCASSA-CLLFFLFGSSAAAGLSVPGASDDQL----TKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp TSEEECTTSS-CEEEEECSSSCEEEEEETTTEEEEE----EECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred cceEECCCCC-EEEEEeCCCCeEEEEECCCCcEeEE----eeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCce
Confidence 4689999998 666654 679999999987543221 1112211 12233444777788888888888876542
Q ss_pred eeeE-----EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe--ecC----------CCCeEEEE
Q 039302 316 ALMS-----FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYH----------KHPVTSIE 378 (479)
Q Consensus 316 ~~~~-----~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~--~~h----------~~~I~~v~ 378 (479)
.... +..+...+..+.+.+++ ..+.+ ..+.++++++..... .... ..+ ......++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~a 270 (368)
T d1mdah_ 198 AAGIVGAQCTGAQNCSSQAAQANYPG-MLVWA--VASSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCEEETTTT-EEEEC--BSSCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred eeeeeecccccccccceeecccccCc-EEEEe--cCCCEEEEeecCCce----EEEeecccccceeeeeeecCCCceeEE
Confidence 2211 12333445567777776 44443 345677777665441 1111 111 11234578
Q ss_pred EeCCCCCEEEEEeCC--------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 379 WSPHEGSTLAVSSAD--------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 379 ~sp~~~~~las~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
++|++..++++...+ ..|.+||+.+.+. +... .....+..++|+|++
T Consensus 271 ~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~------------------------~~~~-~~~~~~~~~a~spDG 325 (368)
T d1mdah_ 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT------------------------SGPI-SNGHDSDAIIAAQDG 325 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE------------------------EECC-EEEEEECEEEECCSS
T ss_pred EcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE------------------------eEEe-cCCCceeEEEECCCC
Confidence 888764444443322 3588999987742 1111 111358899999998
Q ss_pred Cc-EEEEEcCCC-ceEEeeecc
Q 039302 451 PG-MIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 451 ~~-ll~s~~~dg-i~iw~~~~~ 470 (479)
.. +++++..++ |.||++.+.
T Consensus 326 ~~~ly~s~~~~~~v~v~D~~tg 347 (368)
T d1mdah_ 326 ASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp SCEEEEEETTTTEEEEEESSSC
T ss_pred CEEEEEEeCCCCeEEEEECCCC
Confidence 65 567777777 999997654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.11 E-value=4e-08 Score=93.29 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=102.0
Q ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce--eeEE--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA--LMSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 282 ~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~--~~~~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
.+.++.|+|+++.++++......|.+|++...... .... .........+.|+|++..+.++.-.+++|.+|++...
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 47899999999955555555668889887654321 1111 2235678999999999666677778899999998765
Q ss_pred CCCCceEEEee-----------------cCCCCeEEEEEeCCCCCEEEEEe-CCCc-----EEEEECCCCCChHHHHHHh
Q 039302 358 KGGDSVVAHFE-----------------YHKHPVTSIEWSPHEGSTLAVSS-ADNQ-----LTIWDLSLEKDEEEEAEFK 414 (479)
Q Consensus 358 ~~~~~~~~~~~-----------------~h~~~I~~v~~sp~~~~~las~s-~Dg~-----I~iwdl~~~~~~~~~~~~~ 414 (479)
.. ..+.... .+......+.++|++ .+|+++. .+.. |..|++......
T Consensus 226 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~------- 295 (365)
T d1jofa_ 226 TH--MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSI------- 295 (365)
T ss_dssp TC--CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCE-------
T ss_pred Cc--eEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCce-------
Confidence 42 1122111 011235678999976 6655543 3333 777776654210
Q ss_pred hhcccccCCCCCCCCceEEeec--CCCCeeeEEEeC-CCCcEEEEEcCCC-ceEEeeec
Q 039302 415 AKTREQVNAPEDLPPQLLFIHQ--GQKDLKELHWHT-QVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 415 ~~~~~~~~~~~~~p~~l~~~h~--g~~~V~~v~w~p-~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.......+. .......++++| ++.+|+++...++ |.+|+...
T Consensus 296 -------------~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 296 -------------EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp -------------EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred -------------eeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 001111211 123578899998 6776777766666 99998653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.02 E-value=4.4e-09 Score=101.13 Aligned_cols=257 Identities=10% Similarity=0.010 Sum_probs=150.0
Q ss_pred cEEEEEeCCceEEEEeCCCCccccccccccc-----CCCCCcc-----ccCCCcEEecCCCCceEEEEeCCCCCCeE-EE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVA-----GHGAPQV-----LNQSPLVKFGGHKDEGYAIDWNPVAPGRL-VS 251 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~s~~~~~~l-~s 251 (479)
..++|++.+|.|+||++.+.... ....... ....... ...........|..........|+|+ +| ++
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l-~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr-~lfV~ 89 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMREL-MRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGK-YLFIN 89 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEE-EEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEE-EEEEE
T ss_pred EEEEeCCCCCcEEEEeCCCCcEE-EEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCC-EEEEE
Confidence 45788899999999999764211 1100000 0000000 00011111233555666677789998 55 55
Q ss_pred EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE------------------EEEEcCCC
Q 039302 252 GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI------------------AIWDTRVG 313 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I------------------~iwD~~~~ 313 (479)
...+++|.++|+.+.+.... .-..+...+..++|+|+++..++++.....+ ..+|..+.
T Consensus 90 d~~~~rVavIDl~t~k~~~i---i~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~ 166 (441)
T d1qnia2 90 DKANTRVARIRLDIMKTDKI---THIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM 166 (441)
T ss_dssp ETTTTEEEEEETTTTEEEEE---EECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred cCCCCEEEEEECCCCcEeeE---EecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence 56788999999988654221 1123456789999999998655555444443 45787776
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----------------------------------------CeEEEE
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDD-----------------------------------------GTFSIH 352 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----------------------------------------g~i~iw 352 (479)
. ....+... .....+.|+|++ .++++.+.+ +.+.|+
T Consensus 167 ~-v~~qI~v~-~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd 243 (441)
T d1qnia2 167 D-VAWQVIVD-GNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD 243 (441)
T ss_dssp S-EEEEEEES-SCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred e-eeEEEecC-CCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence 5 33344333 356788999999 555444332 333444
Q ss_pred eCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 353 DLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 353 Dlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
+..... .+..+..... ...+.++|++..+++++..+++|.|||+.+..+ .+..+ .+ +...+
T Consensus 244 ~~~~~~----v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~-----~~~~~--------~~-~~~~~ 304 (441)
T d1qnia2 244 GRGESE----FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD-----LFEDK--------IE-LRDTI 304 (441)
T ss_dssp CSSSCS----SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH-----HTTTS--------SC-GGGGE
T ss_pred cccCCc----eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhh-----Hhhcc--------CC-cceEE
Confidence 433333 5666666544 478999998766677788899999999976421 11000 01 11112
Q ss_pred Eeec-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 433 FIHQ-GQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 433 ~~h~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
..+. ..-.....+|.+.+ ....|...|. |..|++
T Consensus 305 ~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 305 VAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp EECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEH
T ss_pred EeecccccCcccceecCCc-eEEEcccccceEEEecc
Confidence 2211 11235567899987 4777777777 777875
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.8e-07 Score=84.03 Aligned_cols=205 Identities=11% Similarity=0.077 Sum_probs=124.1
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeC-CC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDC-NS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~-dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
.+..+...+...+|||+|+ .||-... .+ .+.+.+...... ..+..+........|+|++..++.....++.
T Consensus 33 ~l~~~~~~~~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~ 106 (269)
T d2hqsa1 33 VVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPDGSKLAFALSKTGS 106 (269)
T ss_dssp EEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred EEecCCCceeeeEECCCCC-EEEEEEeeccCcceeeeecccCce-----eEEeeeecccccceecCCCCeeeEeeecCCc
Confidence 3334456788999999998 7775543 33 455556554332 2344566788899999999955555555555
Q ss_pred EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 305 IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGT--FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
..++.......................+++.+...+++...+|. |.+.++.... ......+........|+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~spd 181 (269)
T d2hqsa1 107 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSD 181 (269)
T ss_dssp CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----CEECCCSSSEEEEEEECTT
T ss_pred cceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc-----ceeeecccccccccccccc
Confidence 54444443322233334444555666788877667777777765 4455554443 3444556677788899997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+..++.+....+...+|.+..... ...............|+|+|..|+.++..++
T Consensus 182 g~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~ 237 (269)
T d2hqsa1 182 GKFMVMVSSNGGQQHIAKQDLATG------------------------GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMG 237 (269)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTC------------------------CEEECCCSSSCEEEEECTTSSEEEEEEEETTE
T ss_pred cceeEEEeecCCceeeeEeecccc------------------------cceEeecCccccceEECCCCCEEEEEEcCCCC
Confidence 755555555566666666554421 1111122235677899999988877766555
Q ss_pred --ceEEee
Q 039302 462 --FNILMP 467 (479)
Q Consensus 462 --i~iw~~ 467 (479)
|.++++
T Consensus 238 ~~l~~~~~ 245 (269)
T d2hqsa1 238 SVLNLVST 245 (269)
T ss_dssp EEEEEEET
T ss_pred cEEEEEEC
Confidence 444444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.97 E-value=1.8e-07 Score=86.21 Aligned_cols=247 Identities=8% Similarity=0.012 Sum_probs=160.3
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.|...+...+-...+..+++.|+| +++++...+++|+.|+... . ...+......+.
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g----------------------~-~~~~~~~~~~~~ 71 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG----------------------N-QQIHATVEGKVS 71 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC----------------------C-EEEEEECSSEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCC----------------------C-EEEEEcCCCCcc
Confidence 333333334434468889999999 6888988899988887554 1 223344556889
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|.+++. ++++...++.+.+|+.......... ..........+.+.+.+++. ++++.+.++.+..+|.......+
T Consensus 72 gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~ 148 (302)
T d2p4oa1 72 GLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET-LLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSI 148 (302)
T ss_dssp EEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE-EEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred eEEEcCCCC-eEEEecCCceEEEEEecccccceee-ccccCCccccceeEEccCCC-EEeeccccccceeeeccCCccee
Confidence 999999997 8888888888888887553221110 01112345689999999987 88888888999999888763222
Q ss_pred eEEe---------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 318 MSFK---------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 318 ~~~~---------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
.... ......+.+.+.. ..++++.+..+.|..+++....... ....+. .......+++.+++ ++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~pdgia~d~dG-~l~v 223 (302)
T d2p4oa1 149 WLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPG-EPEIFV-EQTNIDDFAFDVEG-NLYG 223 (302)
T ss_dssp EEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBC-CCEEEE-ESCCCSSEEEBTTC-CEEE
T ss_pred EecCCccceeeccCcccccccccccC--CceeeecCCCCeEEecccccccccc-cccccc-CCCCCcceEECCCC-CEEE
Confidence 1111 1123467777764 3678888889999999987654211 112222 23345789999965 8888
Q ss_pred EEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEE---eCCCCcEEEEEcC
Q 039302 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHW---HTQVPGMIVSTAA 459 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w---~p~~~~ll~s~~~ 459 (479)
+...+++|..++...... .+.....+...++.++| .+++..|.++++.
T Consensus 224 a~~~~~~V~~i~p~G~~~-----------------------~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 224 ATHIYNSVVRIAPDRSTT-----------------------IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECBTTCCEEEECTTCCEE-----------------------EEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEcCCCcEEEECCCCCEE-----------------------EEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 888899999987654310 11111223345889999 5566656666543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.97 E-value=1.4e-07 Score=84.96 Aligned_cols=241 Identities=10% Similarity=0.032 Sum_probs=148.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
-.-..|++.++|..+++..+..+.+..++.... ......+.+. .....|++++++. ++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~-~~p~gvav~~~g~-i~ 71 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--------------------GTTVLPFNGL-YQPQGLAVDGAGT-VY 71 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC------------------------CEEECCCCSC-CSCCCEEECTTCC-EE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc--------------------eEEEeccCCc-cCceEEEEcCCCC-EE
Confidence 345788999998545555556677777776652 1111111111 2346788999886 66
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++....+.|++++-.+. ... .... ......+|++.+++. ++++-.....+..++.......... .........
T Consensus 72 v~d~~~~~i~~~~~~~~-~~~---~~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~ 144 (260)
T d1rwia_ 72 VTDFNNRVVTLAAGSNN-QTV---LPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDG 144 (260)
T ss_dssp EEETTTEEEEECTTCSC-CEE---CCCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECC-CCSCCSCCE
T ss_pred Eeeeeeceeeeeeeccc-eee---eeee-eeeecccccccccce-eEeeccccccccccccccceeeeee-ecccCCcce
Confidence 66665556665554332 211 1121 234578999999887 7777666777777776654321111 122344578
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHH
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEE 409 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~ 409 (479)
+++++++ .++++...++.|..+|..... ........-.....|++.+++ +++++....+.|..++.....
T Consensus 145 i~~~~~g-~~~v~~~~~~~i~~~d~~~~~----~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~---- 214 (260)
T d1rwia_ 145 VAVDNSG-NVYVTDTDNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT---- 214 (260)
T ss_dssp EEECTTC-CEEEEEGGGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSC----
T ss_pred eeecCCC-CEeeeccccccccccccccce----eeeeeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCe----
Confidence 9999988 788888888999999987654 222222344567899999965 888888888888888765442
Q ss_pred HHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeeccC
Q 039302 410 EAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQ 471 (479)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~~ 471 (479)
..++...+-.....|++++++. ++++-..++ +|+++.+.+
T Consensus 215 --------------------~~~~~~~~~~~P~~i~~d~~g~-l~vad~~~~-rI~~i~~~~ 254 (260)
T d1rwia_ 215 --------------------STVLPFTGLNTPLAVAVDSDRT-VYVADRGND-RVVKLTSLE 254 (260)
T ss_dssp --------------------CEECCCCSCCCEEEEEECTTCC-EEEEEGGGT-EEEEECCCG
T ss_pred --------------------EEEEccCCCCCeEEEEEeCCCC-EEEEECCCC-EEEEEeCCC
Confidence 1111112223578999999985 666544444 677766553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.94 E-value=5.9e-09 Score=99.11 Aligned_cols=201 Identities=12% Similarity=0.043 Sum_probs=125.5
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
...+.|+|+|..++++...++.|.+||+.. .+.+..+..+.... +.+.+...+++
T Consensus 126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~----~~~~~~~~~v~ 180 (368)
T d1mdah_ 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPG---------------------ASDDQLTKSASCFH----IHPGAAATHYL 180 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETT---------------------TEEEEEEECSSCCC----CEEEETTEEEC
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCC---------------------CcEeEEeeccCcce----EccCCCceEEE
Confidence 346899999977776656789999999987 44445554443321 22333336677
Q ss_pred EeCCCeEEEEecCCCCccc--cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE-Eec------
Q 039302 252 GDCNSCIHLWEPASDATWN--VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-FKA------ 322 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-~~~------ 322 (479)
.+.||.+.+|++....... .....+..+...+..+.+.+++. .+.+ ..+.+.+++.......... ...
T Consensus 181 ~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (368)
T d1mdah_ 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE-EEEe--cCCCEEEEeecCCceEEEeecccccceee
Confidence 7778888888776543311 11123444555566778888765 4443 3466777776654311110 000
Q ss_pred ----CCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC-EEEE
Q 039302 323 ----HNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS-TLAV 389 (479)
Q Consensus 323 ----h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~-~las 389 (479)
.......+++++++..++++...+ ..|.+||..+++ .+..+.. ...+.+++|+|++.. ++++
T Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~----~~~~~~~-~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPISN-GHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCEE-EEEECEEEECCSSSCEEEEE
T ss_pred eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc----EeEEecC-CCceeEEEECCCCCEEEEEE
Confidence 111234578888884444443222 358999999887 6666653 457889999997644 4577
Q ss_pred EeCCCcEEEEECCCCC
Q 039302 390 SSADNQLTIWDLSLEK 405 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~ 405 (479)
++.|+.|.|||..+++
T Consensus 333 ~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 333 SAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ETTTTEEEEEESSSCE
T ss_pred eCCCCeEEEEECCCCC
Confidence 7789999999998874
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.83 E-value=6.5e-06 Score=75.82 Aligned_cols=244 Identities=10% Similarity=0.102 Sum_probs=145.5
Q ss_pred ceeEEEEecCCCcEEEEEeC-------CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec----CCCCceEEE
Q 039302 171 CVNRIRAMSQNPHICASWAD-------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG----GHKDEGYAI 239 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~-------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l 239 (479)
..-.++|.++| ++.++... +|+|..||.... ....... .....-..|
T Consensus 19 g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~---------------------~~~~~~~~~~~~~~g~P~Gl 76 (314)
T d1pjxa_ 19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTG---------------------KKTVICKPEVNGYGGIPAGC 76 (314)
T ss_dssp TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTC---------------------CEEEEECCEETTEECCEEEE
T ss_pred CCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCC---------------------cEEEEECCccccCCCcceeE
Confidence 45678899999 45544222 356888877652 1111111 111235689
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCC-CcEEEEEECCCCCcEEEEEeC---------------CC
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHA-ASVEDLQWSPTESDVFASCSV---------------DG 303 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~---------------dg 303 (479)
+|.+++. +|++++..+.|...+...... ........+.. ...+++++.++|. +.++-.. .|
T Consensus 77 ~~~~dg~-~l~vad~~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G 153 (314)
T d1pjxa_ 77 QCDRDAN-QLFVADMRLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EECSSSS-EEEEEETTTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEeCCCC-EEEEEECCCeEEEEeCCCcEE-EEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCc
Confidence 9999987 888888778888888765322 11111112211 2368899999998 6665321 22
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCCCCCC--ceEEEeec-CCCCeEE
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLAS----CLLASGSDDGTFSIHDLRLLKGGD--SVVAHFEY-HKHPVTS 376 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~----~~l~sgs~dg~i~iwDlr~~~~~~--~~~~~~~~-h~~~I~~ 376 (479)
.|..++... + ...+...-..-+.++|+|++. .++++-+..+.|..||+....... .....+.. +....-.
T Consensus 154 ~v~~~~~dg-~--~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG 230 (314)
T d1pjxa_ 154 SIYCFTTDG-Q--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp EEEEECTTS-C--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred eEEEEeecC-c--eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence 333333321 1 222223334458899988763 366677788899999876443100 01112222 1223567
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+++..++ +++++....+.|.+||..... .+...+.....+++++|.|++..|.++
T Consensus 231 iavD~~G-nlyVa~~~~g~I~~~dp~~g~------------------------~~~~i~~p~~~~t~~afg~d~~~lyVt 285 (314)
T d1pjxa_ 231 MDFDEDN-NLLVANWGSSHIEVFGPDGGQ------------------------PKMRIRCPFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp EEEBTTC-CEEEEEETTTEEEEECTTCBS------------------------CSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred eEEecCC-cEEEEEcCCCEEEEEeCCCCE------------------------EEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence 9999855 888888788999999977553 122233333568999999988768888
Q ss_pred EcCCCceEEeee
Q 039302 457 TAADGFNILMPS 468 (479)
Q Consensus 457 ~~~dgi~iw~~~ 468 (479)
.+.++ .||++.
T Consensus 286 ~~~~g-~i~~~~ 296 (314)
T d1pjxa_ 286 EHENN-AVWKFE 296 (314)
T ss_dssp ETTTT-EEEEEE
T ss_pred ECCCC-cEEEEE
Confidence 77766 555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.83 E-value=1.3e-08 Score=97.69 Aligned_cols=207 Identities=8% Similarity=-0.015 Sum_probs=131.2
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~ 245 (479)
.|.-........|+|+.++++...+++|.++|+.+ .+....+. .+......++|+|++
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t---------------------~k~~~ii~iP~g~gphgi~~spdg 127 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDI---------------------MKTDKITHIPNVQAIHGLRLQKVP 127 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTT---------------------TEEEEEEECTTCCCEEEEEECCSS
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCC---------------------CcEeeEEecCCCCCccceEEeccC
Confidence 45556667778899988888888999999999987 34444443 356688999999998
Q ss_pred CCeEEEEeCCCeE------------------EEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC------
Q 039302 246 PGRLVSGDCNSCI------------------HLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------ 301 (479)
Q Consensus 246 ~~~l~sg~~dg~I------------------~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------ 301 (479)
+...+++.....+ ..+|..+..... ... -.+....+.|+|+++..++++..
T Consensus 128 ~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~----qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~ 202 (441)
T d1qnia2 128 KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW----QVI-VDGNLDNTDADYTGKYATSTCYNSERAVD 202 (441)
T ss_dssp BCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE----EEE-ESSCCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred CEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE----EEe-cCCCccceEECCCCCEEEEEecCCCceEE
Confidence 7534444434343 335554432211 011 12346778999999944444422
Q ss_pred ----------------------------------CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC
Q 039302 302 ----------------------------------DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG 347 (479)
Q Consensus 302 ----------------------------------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg 347 (479)
++.+.|++....+ .+..+..... ...+.++|++..++++|..++
T Consensus 203 id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~-v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~ 280 (441)
T d1qnia2 203 LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE-FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSP 280 (441)
T ss_dssp HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS-SEEEECCBSS-CCCEEECTTSCEEEEECTTSS
T ss_pred EeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc-eEEEEeCCCC-ccCceECCCCCEEEEeCCcCC
Confidence 2333444333322 3444444333 467899999976778899999
Q ss_pred eEEEEeCCCCCC-------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 348 TFSIHDLRLLKG-------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 348 ~i~iwDlr~~~~-------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
+|.|||+.+... ....+.-.....-.....+|.+.+ +.+.+...|.+|..|++.
T Consensus 281 tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 281 TVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp BEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHH
T ss_pred cEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccc
Confidence 999999875331 001122111122234556899954 888888999999999984
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.82 E-value=9.8e-09 Score=100.99 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=110.7
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc-cCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------CCcEE
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN-VDPNPFIGHAASVEDLQWSPTESDVFASCSV---------DGNIA 306 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------dg~I~ 306 (479)
..+.|.+++. ++.. .++.|.+||+.++.... +....+..|...|.+++|||+++ .|+.++. ++.+.
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeeeccCceEE
Confidence 4578999875 5543 47889999999876532 23356777888999999999999 6666643 56789
Q ss_pred EEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-----------------
Q 039302 307 IWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----------------- 369 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----------------- 369 (479)
|||+.+++ +..+..+...+..+.|+|+| ..||.. .++.+++|++..+. .......
T Consensus 96 l~d~~~~~--~~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~----~~~~t~~~~~~~~~~g~~d~~~~~ 167 (470)
T d2bgra1 96 IYDLNKRQ--LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLP----SYRITWTGKEDIIYNGITDWVYEE 167 (470)
T ss_dssp EEETTTTE--ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSC----CEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEECCCCc--ccccccCCccccccccccCc-ceeeEe-ecccceEEECCCCc----eeeeeeccCCCcccccccceeeee
Confidence 99999874 45677888999999999999 777775 46789999998876 2332211
Q ss_pred -CCCCeEEEEEeCCCCCEEEEEeCCCc-EEEEEC
Q 039302 370 -HKHPVTSIEWSPHEGSTLAVSSADNQ-LTIWDL 401 (479)
Q Consensus 370 -h~~~I~~v~~sp~~~~~las~s~Dg~-I~iwdl 401 (479)
..+....+.|+|++ ..||....|.+ |..|.+
T Consensus 168 ~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 168 EVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp HTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEE
T ss_pred eecCCccccEECCCC-CccceeEecCCcCceEEE
Confidence 12334568899966 78888776544 555544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.63 E-value=5.9e-05 Score=69.30 Aligned_cols=247 Identities=9% Similarity=0.011 Sum_probs=147.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..+..++|.+++ ++.++-...|.|+.|+... ......+........+|++.+++. ++
T Consensus 40 ~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g---------------------~~~~~~~~~~~~~p~gla~~~dG~-l~ 96 (319)
T d2dg1a1 40 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPET---------------------KEIKRPFVSHKANPAAIKIHKDGR-LF 96 (319)
T ss_dssp CCEEEEEECTTS-CEEEEETTTCEEEEECTTT---------------------CCEEEEEECSSSSEEEEEECTTSC-EE
T ss_pred cCcEeCEECCCC-CEEEEECCCCEEEEEECCC---------------------CeEEEEEeCCCCCeeEEEECCCCC-EE
Confidence 345689999998 5777777889898888765 222333334455678999999986 66
Q ss_pred EEEeC----CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC------CCcEEEEEcCCCCceeeE
Q 039302 250 VSGDC----NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------DGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 250 ~sg~~----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------dg~I~iwD~~~~~~~~~~ 319 (479)
++... .+.|...+......... .... .-....+++.+.++|. ++++... .+.+..++.... .+..
T Consensus 97 va~~~~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~ 171 (319)
T d2dg1a1 97 VCYLGDFKSTGGIFAATENGDNLQDI-IEDL-STAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR--TVTP 171 (319)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEE-ECSS-SSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC--CEEE
T ss_pred EEecCCCccceeEEEEcCCCceeeee-ccCC-CcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc--eeEE
Confidence 65432 23444445443322111 0111 1134578999999998 6665432 123444444332 2333
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE----eecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH----FEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~----~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
+...-...+.|+|+|++..++++-+..+.|..||+............ ........-.+++.+++ ++.++....+.
T Consensus 172 ~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~ 250 (319)
T d2dg1a1 172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGR 250 (319)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTE
T ss_pred EeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCE
Confidence 32233456889999999557777788899999998754321111111 11112235679999855 88888888999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-----CC-CCeeeEEEeCCCCcEEEEEcC----CCceEE
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-----GQ-KDLKELHWHTQVPGMIVSTAA----DGFNIL 465 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-----g~-~~V~~v~w~p~~~~ll~s~~~----dgi~iw 465 (479)
|.+||-. ++ .+..+.. ++ ..+++++|.|....+++++++ .+-.+|
T Consensus 251 V~~~~p~-G~------------------------~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~ 305 (319)
T d2dg1a1 251 VLVFNKR-GY------------------------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLY 305 (319)
T ss_dssp EEEECTT-SC------------------------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEE
T ss_pred EEEECCC-Cc------------------------EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEE
Confidence 9999953 32 1111111 11 247899999987666666543 224667
Q ss_pred eeecc
Q 039302 466 MPSNI 470 (479)
Q Consensus 466 ~~~~~ 470 (479)
.+...
T Consensus 306 ~~~~~ 310 (319)
T d2dg1a1 306 TVNGF 310 (319)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 66443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.63 E-value=3e-05 Score=69.83 Aligned_cols=238 Identities=10% Similarity=0.031 Sum_probs=149.8
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec------CCCCceEEEEeCCCC
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------GHKDEGYAIDWNPVA 245 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~s~~~ 245 (479)
-..|++.+++ .++++-..+..|++||.+.. .+..+. +....-..+++....
T Consensus 25 P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~----------------------~~~~~~~~~~~~~~~~~p~~~~~~~~~ 81 (279)
T d1q7fa_ 25 PSGVAVNAQN-DIIVADTNNHRIQIFDKEGR----------------------FKFQFGECGKRDSQLLYPNRVAVVRNS 81 (279)
T ss_dssp EEEEEECTTC-CEEEEEGGGTEEEEECTTSC----------------------EEEEECCBSSSTTCBSSEEEEEEETTT
T ss_pred ccEEEEcCCC-CEEEEECCCCEEEEEeCCCC----------------------EEEEecccCCCcccccccccccccccc
Confidence 5789999988 67777677889999986541 222221 111123445555444
Q ss_pred CCeEEE-EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--ec
Q 039302 246 PGRLVS-GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--KA 322 (479)
Q Consensus 246 ~~~l~s-g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--~~ 322 (479)
...+++ .+.++.|.+++... ..... .-.........+++.+++. ++++....+.+.+++.... .+..+ ..
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~g-~~~~~---~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~--~~~~~g~~~ 154 (279)
T d1q7fa_ 82 GDIIVTERSPTHQIQIYNQYG-QFVRK---FGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN--VLHKFGCSK 154 (279)
T ss_dssp TEEEEEECGGGCEEEEECTTS-CEEEE---ECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC--EEEEEECTT
T ss_pred cccceeccCCccccccccccc-cceee---cCCCcccccceeccccCCc-EEEEeeccceeeEeccCCc--eeecccccc
Confidence 323433 33455777777532 22111 0112345678899999988 7777777777888876542 34443 34
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEEeC-CCcEEEE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVSSA-DNQLTIW 399 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~s~-Dg~I~iw 399 (479)
+......+++.+++ .++++....+.|++||... + .+..+. ++......|++.|++ +++++-+. +++|.+|
T Consensus 155 ~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G-~----~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f 227 (279)
T d1q7fa_ 155 HLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-Q----YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIF 227 (279)
T ss_dssp TCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-C----EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEE
T ss_pred cccccceeeeccce-eEEeeeccccceeeeecCC-c----eeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEE
Confidence 55678899999988 8899999999999999753 3 566663 344567899999966 77776554 4579998
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+..-.- ...+...........|++.|++. ++++..+..|++|+...+
T Consensus 228 ~~~G~~-----------------------~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 228 TQDGQL-----------------------ISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp CTTSCE-----------------------EEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCC
T ss_pred CCCCCE-----------------------EEEEeCCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeeee
Confidence 843210 01111111112588999999984 666655444999998665
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.59 E-value=4.6e-06 Score=76.37 Aligned_cols=196 Identities=10% Similarity=0.031 Sum_probs=133.2
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+..+++.|++. ++++...+++|..|+.... . ..+......+.+++|++++. ++++...++.+..|+.....
T Consensus 29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~-----~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGN-Q-----QIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTCC-E-----EEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT
T ss_pred CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC-E-----EEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccc
Confidence 578999999997 8999888999998886542 2 22344557899999999998 88888888888888876543
Q ss_pred ceeeEE--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---------CCCCeEEEEEeCCC
Q 039302 315 SALMSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---------HKHPVTSIEWSPHE 383 (479)
Q Consensus 315 ~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---------h~~~I~~v~~sp~~ 383 (479)
.....+ .......+.+.+.+++ .++++.+.++.+..+|...... .+..... .......+.+..
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ngi~~~~-- 174 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGLKRFG-- 174 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEEEEET--
T ss_pred cceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcc---eeEecCCccceeeccCcccccccccccC--
Confidence 222222 2345668999999998 8888888899999999876542 1111111 122356677764
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
..++++.+..+.|..+++...... .....+... .....+++.+++. +.++...++ |
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~~~~~--~~pdgia~d~dG~-l~va~~~~~~V 231 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKP--------------------GEPEIFVEQ--TNIDDFAFDVEGN-LYGATHIYNSV 231 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCB--------------------CCCEEEEES--CCCSSEEEBTTCC-EEEECBTTCCE
T ss_pred CceeeecCCCCeEEeccccccccc--------------------cccccccCC--CCCcceEECCCCC-EEEEEcCCCcE
Confidence 467788888999999988755311 111122222 3477899999986 555444343 5
Q ss_pred eEEee
Q 039302 463 NILMP 467 (479)
Q Consensus 463 ~iw~~ 467 (479)
..+.+
T Consensus 232 ~~i~p 236 (302)
T d2p4oa1 232 VRIAP 236 (302)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 55543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.55 E-value=0.00015 Score=65.76 Aligned_cols=232 Identities=9% Similarity=-0.036 Sum_probs=144.3
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe
Q 039302 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
...|.+....+..+=-..+.|+.||.... + ...+. ....+.++++.+++. |+.++
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g---------------------~-~~~~~-~~~~~~~i~~~~dg~--l~va~ 76 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASG---------------------R-KTVHA-LPFMGSALAKISDSK--QLIAS 76 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTT---------------------E-EEEEE-CSSCEEEEEEEETTE--EEEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCC---------------------e-EEEEE-CCCCcEEEEEecCCC--EEEEE
Confidence 45688766567666556788988988762 1 12222 234678899888764 44555
Q ss_pred CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC----CCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV----DGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~----dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
.+ .|.++|..++................++++.+.|+|. +.++... .+.-.+|.+..++ +..+...-..-+.
T Consensus 77 ~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~~~~Ng 152 (295)
T d2ghsa1 77 DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGK--VTKLFADISIPNS 152 (295)
T ss_dssp TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTE--EEEEEEEESSEEE
T ss_pred eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCc--EEEEeeccCCcce
Confidence 44 6889998876542211111111234689999999998 5444332 2345666666553 2222223345689
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGG----DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
++|++++..++++.+..+.|..|++...... ......+..-.+....+++..++ ++.++.-..+.|..||-...
T Consensus 153 ~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~G~- 230 (295)
T d2ghsa1 153 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGN- 230 (295)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCC-
T ss_pred eeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCCCc-
Confidence 9999999677888888899999987532210 11122233344567889998855 77777767889999996432
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCC
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAAD 460 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~d 460 (479)
.+.........+++++|- |+...|+++++..
T Consensus 231 ------------------------~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 231 ------------------------HIARYEVPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp ------------------------EEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ------------------------EeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence 222333323469999996 6767788877654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.47 E-value=1.4e-05 Score=71.25 Aligned_cols=195 Identities=5% Similarity=0.005 Sum_probs=129.4
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
....|++.+++ .++++....+.+++++-.. ...+.... ......++++.+++. +++
T Consensus 58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~---------------------~~~~~~~~-~~~~p~~iavd~~g~-i~v 113 (260)
T d1rwia_ 58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSN---------------------NQTVLPFD-GLNYPEGLAVDTQGA-VYV 113 (260)
T ss_dssp SCCCEEECTTC-CEEEEETTTEEEEECTTCS---------------------CCEECCCC-SCCSEEEEEECTTCC-EEE
T ss_pred CceEEEEcCCC-CEEEeeeeeceeeeeeecc---------------------ceeeeeee-eeeecccccccccce-eEe
Confidence 35678899988 6777777777776665443 11111111 124678999999886 777
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
+-.....+..++......... ...+ .....++++++++. ++++...++.|..+|..... ........-.....|
T Consensus 114 ~d~~~~~~~~~~~~~~~~~~~---~~~~-~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi 187 (260)
T d1rwia_ 114 ADRGNNRVVKLAAGSKTQTVL---PFTG-LNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGI 187 (260)
T ss_dssp EEGGGTEEEEECTTCSSCEEC---CCCS-CCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEE
T ss_pred eccccccccccccccceeeee---eecc-cCCcceeeecCCCC-Eeeeccccccccccccccce-eeeeeccccCCCccc
Confidence 666677788887755333221 1111 23456899999887 88888888999999987653 222222444567899
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
++.+++ +++++....+.|..++..... ...+ ...-...+.|++++++ .++++-..+++|+..+..
T Consensus 188 ~~d~~g-~l~vsd~~~~~i~~~~~~~~~-----~~~~~~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 188 AVDEAG-TVYVTEHNTNQVVKLLAGSTT-----STVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EECTTC-CEEEEETTTTEEEEECTTCSC-----CEECCCCSCCCEEEEEECTTC-CEEEEEGGGTEEEEECCC
T ss_pred eeeeee-eeeeeecCCCEEEEEeCCCCe-----EEEEccCCCCCeEEEEEeCCC-CEEEEECCCCEEEEEeCC
Confidence 999998 888888888899888765443 2222 2223456899999965 888887778877766543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.41 E-value=1.5e-05 Score=75.07 Aligned_cols=168 Identities=10% Similarity=0.047 Sum_probs=103.8
Q ss_pred ceEEEEeCCCCCCeEEEEeC-CCeEEEEecCCCCccccC-CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDC-NSCIHLWEPASDATWNVD-PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
.+.++.|+|+++ +|++++. ...|.+|+....+..... .............++|+|+++.+++++..+++|.+|++..
T Consensus 146 h~h~v~~sPdG~-~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCC-EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 578999999998 7777654 458888887554331110 0111123456889999999996667777899999999976
Q ss_pred CCce-eeEEe-----------------cCCCCEEEEEEcCCCCcEEEEE-eCC-----CeEEEEeCCCCCCCCceEE--E
Q 039302 313 GKSA-LMSFK-----------------AHNADVNVISWNRLASCLLASG-SDD-----GTFSIHDLRLLKGGDSVVA--H 366 (479)
Q Consensus 313 ~~~~-~~~~~-----------------~h~~~v~~l~~~p~~~~~l~sg-s~d-----g~i~iwDlr~~~~~~~~~~--~ 366 (479)
.... +.... .+......+.++|++ .+|+++ ..+ +.|..|++........... .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 5421 11110 111235678999999 555444 222 2377787765442000111 1
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEE-eCCCcEEEEECCCC
Q 039302 367 FEYHKHPVTSIEWSPHEGSTLAVS-SADNQLTIWDLSLE 404 (479)
Q Consensus 367 ~~~h~~~I~~v~~sp~~~~~las~-s~Dg~I~iwdl~~~ 404 (479)
..........++++|.++.+|+++ ..++.|.+|+++..
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 112334567899998555655555 56899999988654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.36 E-value=3e-05 Score=71.15 Aligned_cols=204 Identities=5% Similarity=0.004 Sum_probs=126.1
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCCeE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l 249 (479)
.-+.+.+.+++..++ ++...+.|..++......... .....+.. ...+.+++.+++. +.
T Consensus 72 ~P~Gl~~~~dg~~l~-vad~~~~i~~~~~~g~~~~~~------------------~~~~~g~~~~~pndl~~d~~G~-ly 131 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLF-VADMRLGLLVVQTDGTFEEIA------------------KKDSEGRRMQGCNDCAFDYEGN-LW 131 (314)
T ss_dssp CEEEEEECSSSSEEE-EEETTTEEEEEETTSCEEECC------------------SBCTTSCBCBCCCEEEECTTSC-EE
T ss_pred cceeEEEeCCCCEEE-EEECCCeEEEEeCCCcEEEEE------------------eccccccccCCCcEEEECCCCC-EE
Confidence 457899999984444 445556688888765211110 00000111 1246788888875 55
Q ss_pred EEEeC---------------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC----cEEEEEeCCCcEEEEEc
Q 039302 250 VSGDC---------------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES----DVFASCSVDGNIAIWDT 310 (479)
Q Consensus 250 ~sg~~---------------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----~~l~s~s~dg~I~iwD~ 310 (479)
++-.. .|.|..++.. +... .+...-..-+.++|+|++. .++++-+..+.|..||+
T Consensus 132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~----~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~ 205 (314)
T d1pjxa_ 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI----QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI 205 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE----EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred EecCccCcccccccceeccCCceEEEEeec--Ccee----EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeec
Confidence 55321 2234333332 2211 1112223457889988764 35666677889999988
Q ss_pred CCCCcee-----eEEec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 311 RVGKSAL-----MSFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 311 ~~~~~~~-----~~~~~-h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
....... ..+.. .......|++..++ +++++....+.|.+||..... .+..+.......++++|.|++.
T Consensus 206 ~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~----~~~~i~~p~~~~t~~afg~d~~ 280 (314)
T d1pjxa_ 206 KGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp EETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEECTTSS
T ss_pred cCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCE----EEEEEECCCCCEEEEEEeCCCC
Confidence 7543211 11111 22345689999999 888888888999999988766 5666666667889999999664
Q ss_pred CEEEEEeCCCcEEEEECCCCC
Q 039302 385 STLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~~ 405 (479)
.++++.+..++|...++....
T Consensus 281 ~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 281 TIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEEETTTTEEEEEECSSCB
T ss_pred EEEEEECCCCcEEEEECCCCC
Confidence 577888888999998887654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.18 E-value=0.00018 Score=65.83 Aligned_cols=209 Identities=10% Similarity=0.074 Sum_probs=120.7
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----Cc
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----GN 304 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~ 304 (479)
+......+..++|.+++. ++++-...+.|+.|+........ .+.........|++++++. ++++...+ +.
T Consensus 35 ~~~~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~----~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~ 108 (319)
T d2dg1a1 35 ISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR----PFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGG 108 (319)
T ss_dssp EESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE----EEECSSSSEEEEEECTTSC-EEEEECTTSSSCCE
T ss_pred eccCCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEE----EEeCCCCCeeEEEECCCCC-EEEEecCCCcccee
Confidence 333344567899999986 77777788999999986643321 1223345678999999998 66655332 33
Q ss_pred EEEEEcCCCCceeeEEec---CCCCEEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCCCCCceEEEeecCCCCeE
Q 039302 305 IAIWDTRVGKSALMSFKA---HNADVNVISWNRLASCLLASGSDD------GTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~ 375 (479)
|...+..... +..... -....+.+.+.+++ .+.++.... +.+..++.... .+..+...-...+
T Consensus 109 i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~-----~~~~~~~~~~~pn 180 (319)
T d2dg1a1 109 IFAATENGDN--LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFR-----TVTPIIQNISVAN 180 (319)
T ss_dssp EEEECTTSCS--CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSC-----CEEEEEEEESSEE
T ss_pred EEEEcCCCce--eeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccc-----eeEEEeeccceee
Confidence 4444444432 222221 23457889999999 666664321 23555544322 2333322233457
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
.|+|+|++..++++-+..++|..|++........ ...........+....-.+++.+++..+++
T Consensus 181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~----------------~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va 244 (319)
T d2dg1a1 181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ----------------PFGATIPYYFTGHEGPDSCCIDSDDNLYVA 244 (319)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE----------------EEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred eeeeccccceEEEecccCCceEEEEEcCCCceec----------------cccceeeeccCCccceeeeeEcCCCCEEEE
Confidence 8999997745667777789999999875421000 000011111122223667899998863344
Q ss_pred EEcCCCceEEee
Q 039302 456 STAADGFNILMP 467 (479)
Q Consensus 456 s~~~dgi~iw~~ 467 (479)
..+.+.|.+|++
T Consensus 245 ~~~~g~V~~~~p 256 (319)
T d2dg1a1 245 MYGQGRVLVFNK 256 (319)
T ss_dssp EETTTEEEEECT
T ss_pred EcCCCEEEEECC
Confidence 334443777665
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.14 E-value=0.00029 Score=63.06 Aligned_cols=157 Identities=9% Similarity=0.043 Sum_probs=109.3
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
.....+++..+++. ++++....+.+.+++... ..... .....+......+++.+++. ++++....+.|.+||...
T Consensus 113 ~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g-~~~~~--~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G 187 (279)
T d1q7fa_ 113 LQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG-NVLHK--FGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG 187 (279)
T ss_dssp CSCEEEEEECTTSC-EEEEETTTTEEEEECTTS-CEEEE--EECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC
T ss_pred ccccceeccccCCc-EEEEeeccceeeEeccCC-ceeec--ccccccccccceeeecccee-EEeeeccccceeeeecCC
Confidence 34677899998886 777777777888888643 22110 11223456788999999887 888888899999999765
Q ss_pred CCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecC--CCCeEEEEEeCCCCCEE
Q 039302 313 GKSALMSF--KAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYH--KHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 313 ~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h--~~~I~~v~~sp~~~~~l 387 (479)
. .+..+ .+.......|++.+++ +++++-. .++.|.+|+. .++ .+.++... ....+.|++.|++ .++
T Consensus 188 ~--~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~-~G~----~~~~~~~~~~~~~p~~vav~~dG-~l~ 258 (279)
T d1q7fa_ 188 Q--YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DGQ----LISALESKVKHAQCFDVALMDDG-SVV 258 (279)
T ss_dssp C--EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TSC----EEEEEEESSCCSCEEEEEEETTT-EEE
T ss_pred c--eeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECC-CCC----EEEEEeCCCCCCCEeEEEEeCCC-cEE
Confidence 3 34444 2344567899999999 7777654 3457999984 344 56666432 3457899999954 554
Q ss_pred EEEeCCCcEEEEECCCC
Q 039302 388 AVSSADNQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~ 404 (479)
+++.+++|++|.....
T Consensus 259 -V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 259 -LASKDYRLYIYRYVQL 274 (279)
T ss_dssp -EEETTTEEEEEECSCC
T ss_pred -EEeCCCeEEEEEeeee
Confidence 4567899999998764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.0004 Score=67.10 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=89.7
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---CCCceEEEEeCCCCCCeEEEE
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG---HKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~l~sg 252 (479)
.|.+++ .++.. ..+|.|.+||+... +....+.. ....+....|||++. +++..
T Consensus 23 ~W~~~~-~~~~~-~~~g~i~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~ 78 (465)
T d1xfda1 23 KWISDT-EFIYR-EQKGTVRLWNVETN---------------------TSTVLIEGKKIESLRAIRYEISPDRE-YALFS 78 (465)
T ss_dssp CBSSSS-CBCCC-CSSSCEEEBCGGGC---------------------CCEEEECTTTTTTTTCSEEEECTTSS-EEEEE
T ss_pred EEeCCC-cEEEE-eCCCcEEEEECCCC---------------------CEEEEEcCccccccccceeEECCCCC-eEEEE
Confidence 577777 44443 56789999998762 22111222 123567788999998 66655
Q ss_pred e---------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 253 D---------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 253 ~---------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
. ..+.+.++|+.++....+ .........+....|||+|. .+|-.. ++.|.+.+...+.....+..+.
T Consensus 79 ~~~~~~~r~s~~~~~~i~d~~~~~~~~l--~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~~~lt~~g~ 154 (465)
T d1xfda1 79 YNVEPIYQHSYTGYYVLSKIPHGDPQSL--DPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQAIRVVSTGK 154 (465)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCCEEC--CCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCCEEEECCCB
T ss_pred EcccceeEeeccccEEEEEccCCceeec--cCccCCccccceeeeccCCc-eEEEEe-cceEEEEecCCCceEEEecccC
Confidence 3 357889999987654332 22223344566689999999 555554 6778888877654222222222
Q ss_pred CCC-----------------EEEEEEcCCCCcEEEEEe-CCCeEEEEe
Q 039302 324 NAD-----------------VNVISWNRLASCLLASGS-DDGTFSIHD 353 (479)
Q Consensus 324 ~~~-----------------v~~l~~~p~~~~~l~sgs-~dg~i~iwD 353 (479)
... -..+.|+|+| ..||... ++..|..+.
T Consensus 155 ~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~ 201 (465)
T d1xfda1 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIME 201 (465)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEE
T ss_pred cceeeccccchhhhhhhccccceEEECCCC-CeEEEEEecccccceee
Confidence 111 2577899999 5555543 444444443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=0.00058 Score=65.93 Aligned_cols=253 Identities=11% Similarity=0.088 Sum_probs=131.0
Q ss_pred ceeEEEEecCCCcEEEEE--------eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 171 CVNRIRAMSQNPHICASW--------ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~--------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.+....++|++..+++.. +..+.+.|||+.... ..++.........+....||
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~-------------------~~~l~~~~~~~~~l~~~~wS 122 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------------PQSLDPPEVSNAKLQYAGWG 122 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-------------------CEECCCTTCCSCCCSBCCBC
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc-------------------eeeccCccCCccccceeeec
Confidence 566778999996655542 345788899988721 11111111223345568899
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCC-----CcccCC---------CcEEEEEECCCCCcEEEEEe-CCCcEEE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPN-----PFIGHA---------ASVEDLQWSPTESDVFASCS-VDGNIAI 307 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~-----~~~~h~---------~~V~~l~~sp~~~~~l~s~s-~dg~I~i 307 (479)
|+|. .||-.. ++.|.+.+...+....+... .+.+.. +.-..+-|||+|+ .||... .+..|..
T Consensus 123 PDG~-~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~V~~ 199 (465)
T d1xfda1 123 PKGQ-QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPI 199 (465)
T ss_dssp SSTT-CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCE
T ss_pred cCCc-eEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC-eEEEEEecccccce
Confidence 9998 777665 67888888766443221100 011111 1124678999999 666543 3333333
Q ss_pred ---------------------------------EEcCCCCceeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeC-C--
Q 039302 308 ---------------------------------WDTRVGKSALMSF-----KAHNADVNVISWNRLASCLLASGSD-D-- 346 (479)
Q Consensus 308 ---------------------------------wD~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~-d-- 346 (479)
+|+..+....... ......+..+.|.+++ .+++.... +
T Consensus 200 ~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~ 278 (465)
T d1xfda1 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQN 278 (465)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSC
T ss_pred eecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEEEEccccc
Confidence 3333221111000 1112236788999988 55554332 2
Q ss_pred -CeEEEEeCCCCCCCCceEEEee-cCCCCe----EEEEEeCCCCCEEE-EEe-CCC--cEEEEECCCCCChHHHHHHhhh
Q 039302 347 -GTFSIHDLRLLKGGDSVVAHFE-YHKHPV----TSIEWSPHEGSTLA-VSS-ADN--QLTIWDLSLEKDEEEEAEFKAK 416 (479)
Q Consensus 347 -g~i~iwDlr~~~~~~~~~~~~~-~h~~~I----~~v~~sp~~~~~la-s~s-~Dg--~I~iwdl~~~~~~~~~~~~~~~ 416 (479)
..|.++|..++. ....+. .....| ....|+|++..++. ..+ .+| .+....+.....
T Consensus 279 ~~~i~~~d~~tg~----~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~---------- 344 (465)
T d1xfda1 279 VSILTLCDATTGV----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP---------- 344 (465)
T ss_dssp EEEEEEEETTTCC----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC----------
T ss_pred cceEEEEcCCCCc----EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc----------
Confidence 268889998876 332222 223332 34678887755432 222 233 333333321110
Q ss_pred cccccCCCCCCCCceEEeecCCCCeeeE-EEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 417 TREQVNAPEDLPPQLLFIHQGQKDLKEL-HWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 417 ~~~~~~~~~~~p~~l~~~h~g~~~V~~v-~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
..... .....-.|.-.|.++ +|++.+..+..++..++ -++|++.
T Consensus 345 -----~~~~~---~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~ 392 (465)
T d1xfda1 345 -----NSSND---NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (465)
T ss_dssp -----CSSSC---CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred -----cCCCc---eeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence 00000 111112333456665 68988876766665543 4688764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.98 E-value=0.002 Score=57.86 Aligned_cols=193 Identities=9% Similarity=0.049 Sum_probs=121.1
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEEeCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAIDWNP 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~ 243 (479)
......+.++.+.+++ .++++ +.+ -|.++|..+... +.+...... ...++.+.+.|
T Consensus 55 ~~~~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~-------------------~~l~~~~~~~~~~~~nd~~vd~ 112 (295)
T d2ghsa1 55 HALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVL-------------------TLHAELESDLPGNRSNDGRMHP 112 (295)
T ss_dssp EECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCE-------------------EEEECSSTTCTTEEEEEEEECT
T ss_pred EECCCCcEEEEEecCC-CEEEE-EeC-ccEEeeccccee-------------------eEEeeeecCCCcccceeeEECC
Confidence 3446678899999988 56655 444 488888876210 111111111 12578888999
Q ss_pred CCCCeEEEEeC----CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc----
Q 039302 244 VAPGRLVSGDC----NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---- 315 (479)
Q Consensus 244 ~~~~~l~sg~~----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---- 315 (479)
+|. +.++... .+.-.+|.+..+... .+...-..-+.++|+++++.++++-+..+.|..|++.....
T Consensus 113 ~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~-----~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~ 186 (295)
T d2ghsa1 113 SGA-LWIGTMGRKAETGAGSIYHVAKGKVT-----KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG 186 (295)
T ss_dssp TSC-EEEEEEETTCCTTCEEEEEEETTEEE-----EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred CCC-EEEEeccccccccceeEeeecCCcEE-----EEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc
Confidence 886 4444322 224455655443221 11122334678999999997777888889999998753311
Q ss_pred -e--eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe-CCCCCEEEEEe
Q 039302 316 -A--LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTLAVSS 391 (479)
Q Consensus 316 -~--~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~las~s 391 (479)
. .............+++..++ ++.++.-..+.|..||. .++ .+..+.-....+++++|- |+...+++|++
T Consensus 187 ~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp-~G~----~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 187 KAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGN----HIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp CCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCC----EEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecC-CCc----EeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 1 11122334557889999998 78887777889999995 454 677777656679999996 44445666655
Q ss_pred C
Q 039302 392 A 392 (479)
Q Consensus 392 ~ 392 (479)
.
T Consensus 261 ~ 261 (295)
T d2ghsa1 261 R 261 (295)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.57 E-value=0.0007 Score=59.76 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=59.8
Q ss_pred EEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe
Q 039302 176 RAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 176 ~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
..+|+ |..++.+ .+|.|.+.|+.. ++ ...+..+.......+|||+|+ .||-..
T Consensus 5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~---------------------g~-~~~Lt~~~~~~~~p~~SPDG~-~iaf~~ 59 (281)
T d1k32a2 5 LLNPDIHGDRIIFV--CCDDLWEHDLKS---------------------GS-TRKIVSNLGVINNARFFPDGR-KIAIRV 59 (281)
T ss_dssp CEEEEEETTEEEEE--ETTEEEEEETTT---------------------CC-EEEEECSSSEEEEEEECTTSS-EEEEEE
T ss_pred ccCCCCCCCEEEEE--eCCcEEEEECCC---------------------CC-EEEEecCCCcccCEEECCCCC-EEEEEE
Confidence 35788 8665555 346788888876 33 345666677889999999998 776543
Q ss_pred -CCC-----eEEEEecCCCCccccCCCC--cccCCCcEEEEEECCCCCcEEEEE
Q 039302 254 -CNS-----CIHLWEPASDATWNVDPNP--FIGHAASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 254 -~dg-----~I~lwd~~~~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~~l~s~ 299 (479)
.++ .|.+++...+....+.... ............|+|+++ .++..
T Consensus 60 ~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~-~l~~~ 112 (281)
T d1k32a2 60 MRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIIST 112 (281)
T ss_dssp EESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEE
T ss_pred eeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC-EEEEE
Confidence 222 4666676554332211000 111223457789999998 55544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=0.03 Score=48.93 Aligned_cols=206 Identities=7% Similarity=-0.053 Sum_probs=127.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+...+..|+|.+.+..+..+-...+.|+..++.. ......+......+.+|++...+.
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g---------------------~~~~~v~~~~~~~p~~iAvD~~~~ 91 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTIIRQDLGSPEGIALDHLGR 91 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEEECTTCCCEEEEEEETTTT
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc---------------------CCcEEEEEeccccccEEEEeccCC
Confidence 34456888999988867777766778888888875 222222333334567777766555
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE--EcCCCCceeeEEecCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW--DTRVGKSALMSFKAHN 324 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw--D~~~~~~~~~~~~~h~ 324 (479)
.+..+-...+.|.+.++.......+ ..........++++|....++.+-...+..+|+ ++.... ........-
T Consensus 92 ~lY~~d~~~~~I~~~~~dg~~~~~l----~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~ 166 (263)
T d1npea_ 92 TIFWTDSQLDRIEVAKMDGTQRRVL----FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNL 166 (263)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEE----ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTC
T ss_pred eEEEeccCCCEEEEEecCCceEEEE----ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecc
Confidence 2344555677999999865433111 112235688999999888555554333333444 554432 222222233
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
...+.|++.+.+..+..+-...+.|...|+.... ....+.+-.. ..+|++. ++.++.+-...+.|...|...+
T Consensus 167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~----~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g 239 (263)
T d1npea_ 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG----RRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (263)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE----EEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred cccceEEEeecCcEEEEEeCCCCEEEEEECCCCC----eEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence 4568999998875566666778899999997654 2233343333 4578876 4366666667788888888766
Q ss_pred C
Q 039302 405 K 405 (479)
Q Consensus 405 ~ 405 (479)
.
T Consensus 240 ~ 240 (263)
T d1npea_ 240 K 240 (263)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.033 Score=48.72 Aligned_cols=167 Identities=13% Similarity=0.049 Sum_probs=104.2
Q ss_pred CCCceEEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
....+.+|+|.+... +|.-.+ ..+.|.-.++...................+..|++.+.+.+++.+-...+.|.+.++
T Consensus 28 ~~~~~~~id~d~~~~-~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~ 106 (266)
T d1ijqa1 28 NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (266)
T ss_dssp SCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEEEeCCC-EEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence 445678999998776 555554 566777666643221110001111223456788998877767887778889999999
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.... ..............++++|..+.++.+.. ..+.|.-.++.... ........-...+.+++.+.+..+..+
T Consensus 107 ~g~~-~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~----~~~l~~~~~~~p~gl~iD~~~~~lYw~ 181 (266)
T d1ijqa1 107 KGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWV 181 (266)
T ss_dssp TSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCce-EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc----eecccccccceeeEEEeeccccEEEEe
Confidence 8764 33334445566889999987646666543 33466666665433 222233334567899999977556666
Q ss_pred EeCCCcEEEEECCCC
Q 039302 390 SSADNQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~ 404 (479)
-+..+.|...++...
T Consensus 182 d~~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 182 DSKLHSISSIDVNGG 196 (266)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCcCEEEEEECCCC
Confidence 677889998888654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.08 E-value=0.044 Score=47.41 Aligned_cols=206 Identities=12% Similarity=0.047 Sum_probs=97.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCc-----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTG-----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
++..+.+.+...+|+|+|..++.+...++ .|.+++........ . ................
T Consensus 35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~--l-------------t~~~~~~~~~~~~~~~ 99 (281)
T d1k32a2 35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR--I-------------TYFSGKSTGRRMFTDV 99 (281)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE--C-------------CCCCEEEETTEECSEE
T ss_pred EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE--e-------------eecCCCccCccccccc
Confidence 46678888999999999976665544332 35555654421000 0 0000111122234567
Q ss_pred EEeCCCCCCeEEEEeCC------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---------
Q 039302 239 IDWNPVAPGRLVSGDCN------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--------- 303 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--------- 303 (479)
..|+|++. .|+..... ..+...+...... . ..+......+ |.+++...++......
T Consensus 100 ~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (281)
T d1k32a2 100 AGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINF-V------PLNLGPATHI-LFADGRRVIGRNTFELPHWKGYRGG 170 (281)
T ss_dssp EEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEE-E------ECCSCSCSEE-EEETTEEEEEESCSCCTTSTTCCST
T ss_pred cccCCCCC-EEEEEEccCCCccceeeeeecCCCcee-E------EecCCcccee-eecCCCeEEEeeccccceeeeeccC
Confidence 89999998 66664322 1244444433211 0 1111122222 3333332333332211
Q ss_pred --cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
...+...... .......+........+.++. ++.....++ .|.++|+.... ...+..+. ......|
T Consensus 171 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~-----~~~lt~~~-~~~~~~~ 240 (281)
T d1k32a2 171 TRGKIWIEVNSG--AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKD-----LRKHTSFT-DYYPRHL 240 (281)
T ss_dssp TCCEEEEEEETT--EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCS-----CEECCCCC-SSCEEEE
T ss_pred Ccceeeeecccc--ceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCc-----eEEeecCC-CcccccC
Confidence 1111111111 112222233344555566543 344343333 57777887665 22232222 2223468
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|++..++.+ .++.|+++|+..++
T Consensus 241 SpDG~~I~f~--~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 241 NTDGRRILFS--KGGSIYIFNPDTEK 264 (281)
T ss_dssp EESSSCEEEE--ETTEEEEECTTTCC
T ss_pred cCCCCEEEEE--eCCEEEEEECCCCC
Confidence 9977554443 36789999988764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.75 E-value=0.15 Score=44.21 Aligned_cols=164 Identities=7% Similarity=-0.053 Sum_probs=104.3
Q ss_pred CCCCceEEEEeCCCCCCeEEEE-eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSG-DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg-~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
.+...+.+|+|.+... +|.-. ...+.|...++.......+ .......+.+|++..-+.+++.+-...+.|.+.+
T Consensus 33 ~~~~~~~~ld~D~~~~-~iywsd~~~~~I~~~~l~g~~~~~v----~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDK-VVYWTDISEPSIGRASLHGGEPTTI----IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEEEEEEEETTTT-EEEEEETTTTEEEEEESSSCCCEEE----ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCCcEEEEEEEeCCC-EEEEEECCCCeEEEEEcccCCcEEE----EEeccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence 3444678899988776 55554 4567888888866444222 1122346889999877775666777788999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGT--FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+.... ....+...-.....++++|..+.++.+-...+. |.--++.... ........-...+.+++.+.+..+.
T Consensus 108 ~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~----~~~i~~~~~~~P~glaiD~~~~~lY 182 (263)
T d1npea_ 108 MDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQDNLGLPNGLTFDAFSSQLC 182 (263)
T ss_dssp TTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEECTTCSCEEEEEEETTTTEEE
T ss_pred cCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC----ceeeeeecccccceEEEeecCcEEE
Confidence 98664 222223334568999999988566666443333 4444554333 2222222334568999998765555
Q ss_pred EEEeCCCcEEEEECCCC
Q 039302 388 AVSSADNQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~ 404 (479)
.+-...+.|...++...
T Consensus 183 w~d~~~~~I~~~~~~g~ 199 (263)
T d1npea_ 183 WVDAGTHRAECLNPAQP 199 (263)
T ss_dssp EEETTTTEEEEEETTEE
T ss_pred EEeCCCCEEEEEECCCC
Confidence 66567788988888654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.22 Score=43.16 Aligned_cols=213 Identities=8% Similarity=-0.089 Sum_probs=126.4
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
+.....+..+.|.+....+..+=...+.|.-.++..... .......+......+.+|++.+.+
T Consensus 26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~-----------------~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC-----------------CcceEEEEeCCCCCcceEEEeecc
Confidence 455667889999988767776655677777666654110 011112222223345566666555
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE-eCCCcEEEEEcCCCCceeeEEecCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC-SVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~-s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
.....+-...++|.+.++....... ...........|+++|....++.+- +..+.|.-.++.... ........-
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~----~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~ 163 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKT----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENI 163 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEE----EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSC
T ss_pred ceEEEEecCCCEEEeEecCCceEEE----EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eeccccccc
Confidence 5355555567789999986543211 1223345678999999776455553 234556666666543 222223333
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
...+.+++.+.+..+..+-...+.|...|+..... ..+...........+|++.. +.++.+-..++.|...+...+
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~--~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE--EEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCCC
Confidence 56789999988856777777788999999865541 12222222223456788773 366666667888888876655
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.77 E-value=0.63 Score=41.66 Aligned_cols=144 Identities=9% Similarity=-0.039 Sum_probs=81.5
Q ss_pred CCCCCCeEEEEe---CCCeEEEEecCCCCccccCCCCcc-cCCCcEEEEEECCCCCcEEEEEe--C-------------C
Q 039302 242 NPVAPGRLVSGD---CNSCIHLWEPASDATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCS--V-------------D 302 (479)
Q Consensus 242 s~~~~~~l~sg~---~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s--~-------------d 302 (479)
..++..+|++.. ...+|-+|++............+. ......++|.+..++. +++|-. . -
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcC
Confidence 445544565553 356788888865432111011111 1234579999998887 677631 1 1
Q ss_pred CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 303 GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 303 g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
++..+|...... .......-...|.|+++|++..++++-+..+.|++|++..... ......+ .-....-.+.+.+.
T Consensus 186 ~~g~v~~~~~~~--~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~-~l~~~pDNi~~d~~ 261 (340)
T d1v04a_ 186 AWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVL-SFDTLVDNISVDPV 261 (340)
T ss_dssp CCEEEEEECSSC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEE-ECSSEEEEEEECTT
T ss_pred CceeEEEEcCCc--eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEe-cCCCCCCccEEecC
Confidence 233444444432 2222223356899999999977778888889999999875442 1111222 23445667888775
Q ss_pred CCCEEEEE
Q 039302 383 EGSTLAVS 390 (479)
Q Consensus 383 ~~~~las~ 390 (479)
++.+.+++
T Consensus 262 ~g~lwva~ 269 (340)
T d1v04a_ 262 TGDLWVGC 269 (340)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEEE
Confidence 54555444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.07 E-value=0.44 Score=43.75 Aligned_cols=197 Identities=7% Similarity=-0.027 Sum_probs=111.5
Q ss_pred CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCCCC-eEEEEeCC--
Q 039302 180 QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAPG-RLVSGDCN-- 255 (479)
Q Consensus 180 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~-~l~sg~~d-- 255 (479)
+|+.+++.-..+++|.+-|+... +...... .....+..+...+..+. +++.++..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~f---------------------kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~v 156 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVM---------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET 156 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT---------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred ceeEEEEEcCCCceEEEEECcce---------------------eeeEEEecCCCCCCceeecccCCCeEEEEccCcccc
Confidence 67788888888999999999873 3222221 12334555665543322 55555442
Q ss_pred ----------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----------------
Q 039302 256 ----------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----------------- 302 (479)
Q Consensus 256 ----------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----------------- 302 (479)
+.+.++|..+...... ... .+....+.++|+|+..|+++...
T Consensus 157 P~pndg~~l~d~~~y~~~~t~ID~~tm~V~~Q--V~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i 231 (459)
T d1fwxa2 157 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ--VLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 231 (459)
T ss_dssp ESSCSSSSTTCGG-EEEEEEEEETTTTEEEEE--EEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred ccCCCCccccchhhcceEEEEEecCCceEEEE--eee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEE
Confidence 2245667655432110 111 22355788999999555554221
Q ss_pred --------------------CcEEEEEcCCCC-ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--
Q 039302 303 --------------------GNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG-- 359 (479)
Q Consensus 303 --------------------g~I~iwD~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~-- 359 (479)
+-+.+-|.+... ..+..+..-......+..+|+|..++++|..+.++.|+|++....
T Consensus 232 ~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~ 311 (459)
T d1fwxa2 232 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF 311 (459)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred EEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh
Confidence 123444544321 112212111223456789999977888888899999999975321
Q ss_pred -----CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 360 -----GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 360 -----~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
....+..-....-.-..-+|...+ +...|.--|.+|.-|++..
T Consensus 312 ~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 312 YENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp HSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecch
Confidence 011121111223344567788744 6666666799999999854
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.14 E-value=1.6 Score=37.83 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=119.6
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC----CceEEEEeCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK----DEGYAIDWNP 243 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~ 243 (479)
....|.-=+|..+. .|+--+ +..|+-|+++. ...|...|..|. ..|..-..++
T Consensus 101 ~~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g--------------------~s~P~k~fdR~~~L~~~QIInY~~d~ 157 (327)
T d1utca2 101 MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDA 157 (327)
T ss_dssp CSSCCCEEEESSSS--EEEEEC-SSEEEEEESSS--------------------SCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred cCCCcEEEEecCCC--EEEEEc-CCceEEEcccC--------------------CCCchhhhhhcccccCceEEEEEECC
Confidence 34556555665544 444333 35699999865 245666666654 3666777777
Q ss_pred CCCCeEEEE------eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC--CcEEEEEe---CCCcEEEEEcCC
Q 039302 244 VAPGRLVSG------DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SDVFASCS---VDGNIAIWDTRV 312 (479)
Q Consensus 244 ~~~~~l~sg------~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~~l~s~s---~dg~I~iwD~~~ 312 (479)
+.+-.+++| .-.|.+.||....... +.+.||.+.-..+.+.-+. ..+|+.+. ..+.++|.++..
T Consensus 158 ~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~ 232 (327)
T d1utca2 158 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 232 (327)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEEEETTTTEE-----EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSC
T ss_pred CCCEEEEEeEecCCCceeEEEEEEEeccCcC-----ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCC
Confidence 776333333 1246788998866432 5577887655555443221 22444433 236899999876
Q ss_pred CCc---e--eeE--E----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 313 GKS---A--LMS--F----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 313 ~~~---~--~~~--~----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
... + ... + .+-.+---++..++.. .++..-+.-|.|++||+.++. ++..-+-...+|-..+-+.
T Consensus 233 ~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt----~i~~nRIs~~~iF~~a~~~ 307 (327)
T d1utca2 233 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT----CIYMNRISGETIFVTAPHE 307 (327)
T ss_dssp CCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEET
T ss_pred CccCCCCCcceeEEEECCccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEccccc----EEEEeecCCCceEEeccCC
Confidence 421 1 111 1 1123344567777776 678888899999999999998 7887777777777555555
Q ss_pred CCCCEEEEEeCCCcEEE
Q 039302 382 HEGSTLAVSSADNQLTI 398 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~i 398 (479)
.. .=+++...+|.|.-
T Consensus 308 ~~-~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 308 AT-AGIIGVNRKGQVLS 323 (327)
T ss_dssp TT-TEEEEEETTSEEEE
T ss_pred CC-ceEEEECCCCeEEE
Confidence 44 34444457777653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.10 E-value=2.2 Score=39.23 Aligned_cols=207 Identities=9% Similarity=0.016 Sum_probs=104.0
Q ss_pred eeEEEEecCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEeCCCCC
Q 039302 172 VNRIRAMSQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~ 246 (479)
+..++++|++..++.+-+..| .|+++|+.+ ++.+. .+. ......++|.+++.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t---------------------g~~~~~~i~--~~~~~~~~W~~D~~ 183 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---------------------AKELPDVLE--RVKFSCMAWTHDGK 183 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT---------------------TEEEEEEEE--EECSCCEEECTTSS
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCc---------------------ceecccccc--cccccceEEcCCCC
Confidence 334567999966666655555 689999987 22221 121 11224688999998
Q ss_pred CeEEEEeC---------------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC--CCc--EEE
Q 039302 247 GRLVSGDC---------------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--DGN--IAI 307 (479)
Q Consensus 247 ~~l~sg~~---------------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--dg~--I~i 307 (479)
+++.+.-. -..|.+|.+.+.................+..+..+++++.++++.+. ++. +.+
T Consensus 184 ~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~ 263 (430)
T d1qfma1 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (430)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence 44444321 12577888766433211111111223356778889999855554432 333 444
Q ss_pred EEcCCCCc-------eeeEEecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCCCCCceEEE-eecCCCCeEE
Q 039302 308 WDTRVGKS-------ALMSFKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLRLLKGGDSVVAH-FEYHKHPVTS 376 (479)
Q Consensus 308 wD~~~~~~-------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~---dg~i~iwDlr~~~~~~~~~~~-~~~h~~~I~~ 376 (479)
.|+..... ....+......+..+... .+ .+++.... ++.|...++..... ..... +..+...+..
T Consensus 264 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~Tn~~a~~~~L~~~~~~~~~~--~~w~~vi~~~~~~~~~ 339 (430)
T d1qfma1 264 CDLQQESNGITGILKWVKLIDNFEGEYDYVTNE-GT-VFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHEKDVLE 339 (430)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEE-TT-EEEEEECTTCTTCEEEEEETTBCCG--GGCEEEECCCSSCEEE
T ss_pred eeCCCcccccccccceeEeecccccceEEEecC-Cc-eeecccCcccccceeEEecCCCCcc--ccceEEecccCcceee
Confidence 45543321 111122223333333332 22 34443332 35677777765431 11233 3334444544
Q ss_pred EEEeCCCCCEEEEEeCCC--cEEEEECCCCC
Q 039302 377 IEWSPHEGSTLAVSSADN--QLTIWDLSLEK 405 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg--~I~iwdl~~~~ 405 (479)
-.+...+..++++.-.++ .|+++++..+.
T Consensus 340 ~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~ 370 (430)
T d1qfma1 340 WVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (430)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred eEEEEECCEEEEEEEcCCEeEEEEEECCCCc
Confidence 344433324444444554 57888887653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.63 E-value=2.3 Score=37.91 Aligned_cols=202 Identities=13% Similarity=0.177 Sum_probs=108.5
Q ss_pred EEEeCCCC--CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC----CCC-cEEEEEe--CC--CcEE
Q 039302 238 AIDWNPVA--PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP----TES-DVFASCS--VD--GNIA 306 (479)
Q Consensus 238 ~l~~s~~~--~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp----~~~-~~l~s~s--~d--g~I~ 306 (479)
++-++|.. ..+++.....+-|++||+.. +.... + ..+.++.|..-. .+. .-++.++ .+ .+|.
T Consensus 30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~G-~~l~~----~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~ 102 (353)
T d1h6la_ 30 AIWLDPKNPQNSKLITTNKKSGLAVYSLEG-KMLHS----Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE 102 (353)
T ss_dssp EEECCSSCGGGCEEEEEETTSCCEEEETTC-CEEEE----C--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEE
T ss_pred eEEcCCCCcCccEEEEEcCcCCEEEEcCCC-cEEEe----c--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEE
Confidence 44455542 22677777777899999953 33221 1 124555554321 121 1344444 22 3577
Q ss_pred EEEcCCCCceeeEEec-------CCCCEEEEEE--cCCCCc-EEEEEeCCCeEEEEeCCCCCC---CCceEEEeecCCCC
Q 039302 307 IWDTRVGKSALMSFKA-------HNADVNVISW--NRLASC-LLASGSDDGTFSIHDLRLLKG---GDSVVAHFEYHKHP 373 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~-------h~~~v~~l~~--~p~~~~-~l~sgs~dg~i~iwDlr~~~~---~~~~~~~~~~h~~~ 373 (479)
+|.+......+..+.. -...+..+|+ ++..+. ++++...+|.+..|.+..... ....++.|.. ...
T Consensus 103 ~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q 181 (353)
T d1h6la_ 103 IYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQ 181 (353)
T ss_dssp EEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSC
T ss_pred EEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCc
Confidence 8887643222322221 1224566666 665433 566777889998887743221 1224555553 557
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC---CCeeeEEEeC--
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ---KDLKELHWHT-- 448 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~---~~V~~v~w~p-- 448 (479)
+-.|.+.+.. ..|..+-++.-|..+++.... .....++..-.+. ..+-.|+.-.
T Consensus 182 ~EGCVvDde~-~~LyisEE~~Giw~~~a~~~~--------------------~~~~~~i~~~~g~~l~~D~EGlaiy~~~ 240 (353)
T d1h6la_ 182 TEGMAADDEY-GSLYIAEEDEAIWKFSAEPDG--------------------GSNGTVIDRADGRHLTPDIEGLTIYYAA 240 (353)
T ss_dssp EEEEEEETTT-TEEEEEETTTEEEEEESSTTS--------------------CSCCEEEEECSSSSCCSCEEEEEEEECG
T ss_pred cceEEEeCCC-CcEEEecCccceEEEEeccCC--------------------CccceeeecccCccccCCccccEEEEcC
Confidence 8899999865 677777777666555554332 1112333332221 2577777654
Q ss_pred CCC-cEEEEEcCCC-ceEEeee
Q 039302 449 QVP-GMIVSTAADG-FNILMPS 468 (479)
Q Consensus 449 ~~~-~ll~s~~~dg-i~iw~~~ 468 (479)
++. ++|+|.-.++ +.||+..
T Consensus 241 ~~~GylivSsQG~n~f~vydr~ 262 (353)
T d1h6la_ 241 DGKGYLLASSQGNSSYAIYERQ 262 (353)
T ss_dssp GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEEEEcCCCCeEEEEecC
Confidence 333 5666665555 8888653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.88 E-value=2.9 Score=37.01 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=89.4
Q ss_pred EEEEeCCCCCCeEEEEe------------CCCeEEEEecCCCCccccCC----CCcccCCCcEEEEEE--CCCCCcEEEE
Q 039302 237 YAIDWNPVAPGRLVSGD------------CNSCIHLWEPASDATWNVDP----NPFIGHAASVEDLQW--SPTESDVFAS 298 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~------------~dg~I~lwd~~~~~~~~~~~----~~~~~h~~~V~~l~~--sp~~~~~l~s 298 (479)
-.|...|++. .+++++ ..|.|.++|+.+........ .......-....+.. .+++...|++
T Consensus 38 EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 38 EDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred ceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 4677788775 444443 14899999987643321111 011111112233333 4566645555
Q ss_pred Ee---CCCcEEEEEcCCCCceeeEE---e-cCCCCEEEEEEcCCCCcEEEEEe-----------------CCCeEEEEeC
Q 039302 299 CS---VDGNIAIWDTRVGKSALMSF---K-AHNADVNVISWNRLASCLLASGS-----------------DDGTFSIHDL 354 (479)
Q Consensus 299 ~s---~dg~I~iwD~~~~~~~~~~~---~-~h~~~v~~l~~~p~~~~~l~sgs-----------------~dg~i~iwDl 354 (479)
.. ...+|.+|++......+.-. . ......|.|.+..++ .+++|-. .-|.|..||.
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 53 45678888886553222211 1 122457899988888 7777731 1223444443
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
. . .......-...+.|+++|++..++++-+..++|++|++...
T Consensus 196 ~--~-----~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 196 N--D-----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp S--C-----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred C--c-----eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 2 2 12221223457899999977566777777899999999754
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=1.8 Score=39.03 Aligned_cols=149 Identities=5% Similarity=-0.004 Sum_probs=86.0
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
...+-+++++.. .+++.|+.++ +.|..+..-.......... ...++...+ ..|..++|+.+ .|
T Consensus 37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~--------~~~~~~~~i----p~v~~vafs~d---~l 99 (381)
T d1xipa_ 37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTP--------LTFKWEKEI----PDVIFVCFHGD---QV 99 (381)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCC--------CCCSEEEEC----TTEEEEEEETT---EE
T ss_pred cccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCC--------CcceeccCC----CCeEEEEeeCC---EE
Confidence 457778888866 4676777765 6677654422211111000 011222222 26888999743 45
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE----EecCCC
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS----FKAHNA 325 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~----~~~h~~ 325 (479)
+... ++.+..++...-.... ....-..++.++.++|. .++.+..+|.+.++++...+..... -..-..
T Consensus 100 ~v~~-~~~l~~~~~~~l~~~~----~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 171 (381)
T d1xipa_ 100 LVST-RNALYSLDLEELSEFR----TVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTN 171 (381)
T ss_dssp EEEE-SSEEEEEESSSTTCEE----EEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECS
T ss_pred EEEe-CCCEEEEEeecccccc----ccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecC
Confidence 5443 5678888776532211 11122456888888875 5777788999999999887521110 011235
Q ss_pred CEEEEEEcCCCCcEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGS 344 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs 344 (479)
.+.+++|++.+ ..++++.
T Consensus 172 ~~~~v~ws~kg-kq~v~~~ 189 (381)
T d1xipa_ 172 SQLAVLLKDRS-FQSFAWR 189 (381)
T ss_dssp SEEEEEETTSC-EEEEEEE
T ss_pred CceEEEEeCCc-EEEEEeC
Confidence 67888888877 6666664
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.33 E-value=1.8 Score=39.62 Aligned_cols=167 Identities=9% Similarity=0.046 Sum_probs=95.2
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCCEEEEEEcC--CCCcEEEEEeCCC------------------eE
Q 039302 291 TESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNADVNVISWNR--LASCLLASGSDDG------------------TF 349 (479)
Q Consensus 291 ~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~v~~l~~~p--~~~~~l~sgs~dg------------------~i 349 (479)
+|+.+|+.-..+..|.+.|+++.+ +...+ ......+..++..+ .. .+++.++.+. .+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fk-t~kIi~iPn~~~~HG~r~~~~p~T-~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMK-CDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE-EEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ceeEEEEEcCCCceEEEEECccee-eeEEEecCCCCCCceeecccCCCe-EEEEccCccccccCCCCccccchhhcceEE
Confidence 678677777889999999999986 32222 23344566666644 33 4666666532 36
Q ss_pred EEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC---------------cEEEEECCCCCChHHHHHHh
Q 039302 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN---------------QLTIWDLSLEKDEEEEAEFK 414 (479)
Q Consensus 350 ~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg---------------~I~iwdl~~~~~~~~~~~~~ 414 (479)
.++|..+.+ ....... ......+.++|++ .++++.|.+. .+.+++..... ...-.
T Consensus 176 t~ID~~tm~----V~~QV~V-~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie----~av~~ 245 (459)
T d1fwxa2 176 TAVDADKWE----VAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----KAIAA 245 (459)
T ss_dssp EEEETTTTE----EEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH----HHHHH
T ss_pred EEEecCCce----EEEEeee-CCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEechHHhH----Hhhhc
Confidence 678888766 3444433 3355678999976 6666655331 23344432211 01001
Q ss_pred hhcccc-----cCCCC-CCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 415 AKTREQ-----VNAPE-DLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 415 ~~~~~~-----~~~~~-~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++.... ..... .....+.++-.+ +....+..+|++.++++++..+. +.|+++..+
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki 307 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 307 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred CCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence 110000 00000 011122223222 45788999999999999988887 999988765
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.28 E-value=4.1 Score=35.18 Aligned_cols=195 Identities=12% Similarity=0.162 Sum_probs=118.4
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg 256 (479)
.+|.. .+||.-+ ..+++|||++. .+.+..+.- ...|.--.|-... .|+-.. +.
T Consensus 70 MhP~~-~IiALra-g~~LQiFnlet---------------------K~klks~~~-~e~VvfWkWis~~--~L~lVT-~t 122 (327)
T d1utca2 70 MNPAS-KVIALKA-GKTLQIFNIEM---------------------KSKMKAHTM-TDDVTFWKWISLN--TVALVT-DN 122 (327)
T ss_dssp ECSSS-SEEEEEE-TTEEEEEETTT---------------------TEEEEEEEC-SSCCCEEEESSSS--EEEEEC-SS
T ss_pred cCCCC-cEEEEec-CCeEEEEehhH---------------------hhhhceEEc-CCCcEEEEecCCC--EEEEEc-CC
Confidence 44555 6776655 56899999987 344454443 3366666776554 555555 56
Q ss_pred eEEEEecCCCCccccCCCCcccC----CCcEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCceeeEEecCCC
Q 039302 257 CIHLWEPASDATWNVDPNPFIGH----AASVEDLQWSPTESDVFASCS-------VDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s-------~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.|+-|++...... .+.|..| ...|-.-..+++.+ .++..+ ..|.+.+|..... .-+.+.+|..
T Consensus 123 aVYHW~~~g~s~P---~k~fdR~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~i~G~mQLYS~er~--~sQ~ieGhaa 196 (327)
T d1utca2 123 AVYHWSMEGESQP---VKMFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAA 196 (327)
T ss_dssp EEEEEESSSSCCC---EEEEECCGGGTTCEEEEEEECTTSC-EEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEE
T ss_pred ceEEEcccCCCCc---hhhhhhcccccCceEEEEEECCCCC-EEEEEeEecCCCceeEEEEEEEeccC--cCccccceee
Confidence 8999999543221 1223333 34677777888888 544432 2477899998875 3455677765
Q ss_pred CEEEEEEcC--CCCcEEEEE---eCCCeEEEEeCCCCCCCCce-----EEEeec---CCCCeEEEEEeCCCCCEEEEEeC
Q 039302 326 DVNVISWNR--LASCLLASG---SDDGTFSIHDLRLLKGGDSV-----VAHFEY---HKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 326 ~v~~l~~~p--~~~~~l~sg---s~dg~i~iwDlr~~~~~~~~-----~~~~~~---h~~~I~~v~~sp~~~~~las~s~ 392 (479)
....+.+.- ....+|+.+ ...+.++|-++........+ +..+-. -.+-..++..++.. .++..-+.
T Consensus 197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK 275 (327)
T d1utca2 197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK 275 (327)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEET
T ss_pred eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC-CEEEEEec
Confidence 444443321 111233332 23368999998764321111 111111 23445688899866 78888889
Q ss_pred CCcEEEEECCCCC
Q 039302 393 DNQLTIWDLSLEK 405 (479)
Q Consensus 393 Dg~I~iwdl~~~~ 405 (479)
-|.|++||+.++.
T Consensus 276 ~G~i~lyDleTgt 288 (327)
T d1utca2 276 YGYIHLYDLETGT 288 (327)
T ss_dssp TSEEEEEETTTCC
T ss_pred CcEEEEEEccccc
Confidence 9999999999983
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.03 E-value=0.58 Score=42.20 Aligned_cols=116 Identities=6% Similarity=-0.034 Sum_probs=65.5
Q ss_pred EEeCCCCCCeEEEEeCCC-----------eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEE
Q 039302 239 IDWNPVAPGRLVSGDCNS-----------CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIA 306 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg-----------~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~ 306 (479)
.....+++ .++.|+.+. .+.+||+.++ .|.........|.......++.+++. +++.|+.+ ..+.
T Consensus 25 a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 25 AIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 101 (387)
T ss_dssp EEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred EEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCC-cEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCccee
Confidence 33344555 666666421 3779999874 33211111122222334567888998 77777654 6899
Q ss_pred EEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCC
Q 039302 307 IWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIHDLRLLK 358 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iwDlr~~~ 358 (479)
+||..+..-...........-..++..+++ .+++.|+.+ ..+.+||..+..
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EecCccCcccccccccccccccceeeecCC-ceeeeccccccccccceeeeecCCCCc
Confidence 999987631110001111122345666777 778877653 358899987653
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=88.02 E-value=9 Score=34.48 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=88.2
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCC---cccCCCcEEEEEECCCCCcEEEEEeCC----Cc
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNP---FIGHAASVEDLQWSPTESDVFASCSVD----GN 304 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~ 304 (479)
-.+.|.+|+++|..++++.+|...|-|..-. ..+..|...... .......+.+|+++|.+.+.+..+..+ ..
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~ 88 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 88 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence 3568999999999988888888766653322 233445422111 112344689999999887666665422 12
Q ss_pred EEEEEcCCCCceeeEEe---------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE---eecCCC
Q 039302 305 IAIWDTRVGKSALMSFK---------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH---FEYHKH 372 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~---~~~h~~ 372 (479)
..||-...+...-..+. .....+..|.++|.++..|.+++.++.|.. ....+.. ...+.. ......
T Consensus 89 ~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~t-W~~~~~~~~~~~~~~ 166 (427)
T d2ebsa1 89 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKT-WTNVTSIPDAFTNGI 166 (427)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSS-CEECTTSSCCCCSSS
T ss_pred ccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCce-eeecccCcccccCCc
Confidence 34454333321111111 112345678899988777777776665432 2222221 111111 111233
Q ss_pred CeEEEEEeCCCCCEEEE-EeCCCcEE
Q 039302 373 PVTSIEWSPHEGSTLAV-SSADNQLT 397 (479)
Q Consensus 373 ~I~~v~~sp~~~~~las-~s~Dg~I~ 397 (479)
.+..|.++|.++..|.+ +...+.|.
T Consensus 167 ~~~~i~~~p~~~~~~y~~~~~~~giy 192 (427)
T d2ebsa1 167 GYTSVIFDPERNGTIYASATAPQGMY 192 (427)
T ss_dssp CEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred cceEEEecccccceeeeeeeecccce
Confidence 47889999977665544 43344454
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=87.35 E-value=8.1 Score=34.84 Aligned_cols=117 Identities=7% Similarity=-0.003 Sum_probs=66.2
Q ss_pred CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-------ecCCCCEEEEEEcCCCCcEEEEEeCCC----
Q 039302 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-------KAHNADVNVISWNRLASCLLASGSDDG---- 347 (479)
Q Consensus 279 h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~sgs~dg---- 347 (479)
-.+.|.+|+++|...+++.+++..|-|..-+ ..++ .-..+ ......+.+|+++|.++..|..+..+.
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~-tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~ 87 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTS-KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 87 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTT-EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCC-ceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence 4678999999999988888888766553322 2222 11111 123346889999998866666654321
Q ss_pred eEEEEeCCCCCCCCceEEEee------cCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 348 TFSIHDLRLLKGGDSVVAHFE------YHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 348 ~i~iwDlr~~~~~~~~~~~~~------~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
...||--.........+..-. .....+..|.++|.++..|.+++.++-|.
T Consensus 88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~ 143 (427)
T d2ebsa1 88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW 143 (427)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEE
T ss_pred CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccccccee
Confidence 123443332221011111000 01234567899998878887777666553
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.64 E-value=5.7 Score=37.92 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe-EEEEEe
Q 039302 302 DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV-TSIEWS 380 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I-~~v~~s 380 (479)
.|.|.-+|+.+++ .+-....+ .++..-.....+ .++++|+.||.++-+|.++++ .+-.++...... .-+.|.
T Consensus 465 ~G~l~AiD~~TG~-i~W~~~~~-~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe----~LW~~~~~~~~~~~P~ty~ 537 (582)
T d1flga_ 465 VGSLRAMDPVSGK-VVWEHKEH-LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK----ELWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCC-EEEEEEES-SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEE
T ss_pred CCeEEEEcCCCCc-EEeecCCC-CCCccceeEEcC-CeEEEeCCCCeEEEEECCCCc----EeEEEECCCCccccCEEEE
Confidence 3667888888875 33333222 122211122334 577889999999999999999 777776422111 114555
Q ss_pred CCCCCEEEEE
Q 039302 381 PHEGSTLAVS 390 (479)
Q Consensus 381 p~~~~~las~ 390 (479)
.++..+++..
T Consensus 538 ~~G~qYv~i~ 547 (582)
T d1flga_ 538 QDGEQYLGVT 547 (582)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 5565565544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.88 E-value=13 Score=33.16 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=71.9
Q ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--------SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 282 ~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
..+-++.++... +|++|+.++ +.|..+..-+ .........-..|..++|+.+ .|+.. .++.+..++
T Consensus 38 ~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d---~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD---QVLVS-TRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT---EEEEE-ESSEEEEEE
T ss_pred ccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC---EEEEE-eCCCEEEEE
Confidence 455678888777 888888775 6676643210 000111112236889999853 34443 456788888
Q ss_pred CCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 354 LRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 354 lr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..... .......-..++.++.++| ..++....++.+.++++....
T Consensus 112 ~~~l~----~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~ 156 (381)
T d1xipa_ 112 LEELS----EFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKS 156 (381)
T ss_dssp SSSTT----CEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC
T ss_pred eeccc----cccccccccccccceecCC---ceeEEEecCCCEEEEEeccCc
Confidence 88766 3444444567899999988 456777789999999998763
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=84.77 E-value=3.5 Score=36.54 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=56.4
Q ss_pred EEEEEcCCCCce-eeE-EecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 305 IAIWDTRVGKSA-LMS-FKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 305 I~iwD~~~~~~~-~~~-~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
+.+||..+..-. ... ...+.......++.+++ .+++.|+.+ ..+.+||..+.. ......+.... .-.+++..+
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~~~--w~~~~~~~~~r-~~~~~~~~~ 129 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQVAR-GYQSSATMS 129 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTE--EEECCCCSSCC-SSCEEEECT
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCcceeEecCccCc--ccccccccccc-cccceeeec
Confidence 678998876421 111 12233334456788888 888888765 589999988765 11111121111 123455566
Q ss_pred CCCCEEEEEeCC------CcEEEEECCCC
Q 039302 382 HEGSTLAVSSAD------NQLTIWDLSLE 404 (479)
Q Consensus 382 ~~~~~las~s~D------g~I~iwdl~~~ 404 (479)
+ +.+++.|+.+ +.+.+||..+.
T Consensus 130 d-G~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 130 D-GRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp T-SCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred C-CceeeeccccccccccceeeeecCCCC
Confidence 4 4788888753 36889998765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.40 E-value=9.5 Score=36.18 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=32.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecC-CCCEEEEEEcCCCCcEEEEEeC
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAH-NADVNVISWNRLASCLLASGSD 345 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~sgs~ 345 (479)
++++++.||.++.+|.++++ .+-.+... ...-.-+.|..++..++++...
T Consensus 477 lVf~G~~dg~l~A~Da~tGe-~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g 527 (571)
T d2ad6a1 477 LVWYATLDGYLKALDNKDGK-ELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG 527 (571)
T ss_dssp EEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEEECCCCeEEEEECCCCc-EEEEEECCCCceecceEEEECCEEEEEEEec
Confidence 67789999999999999997 45444321 1112225555577677766443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=83.03 E-value=15 Score=34.57 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=31.5
Q ss_pred CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 347 GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 347 g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
|.|.-||+.+++ .+-.+.. ..+..+-...- .+.++++|+.||.++.+|..+++
T Consensus 438 G~l~A~D~~tGk----~~W~~~~-~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 438 GALLAWDPVKQK----AAWKVPY-PTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp EEEEEEETTTTE----EEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEeCCCCe----EeeeccC-CCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCc
Confidence 456666777666 3333322 11222111222 23677789999999999999984
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.77 E-value=20 Score=33.78 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=18.5
Q ss_pred CEEEEEeCCCcEEEEECCCCC
Q 039302 385 STLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~~ 405 (479)
.++++|+.|+.++.+|.++++
T Consensus 476 glVf~G~~dg~l~A~Da~tGe 496 (571)
T d2ad6a1 476 GLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEECCCCeEEEEECCCCc
Confidence 677789999999999999984
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=80.32 E-value=18 Score=31.70 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=73.5
Q ss_pred cEEEEEE--CCCC-CcEEEEEeCCCcEEEEEcCCCC---c---eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 282 SVEDLQW--SPTE-SDVFASCSVDGNIAIWDTRVGK---S---ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 282 ~V~~l~~--sp~~-~~~l~s~s~dg~I~iwD~~~~~---~---~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
.+..+|+ ++.+ ..++++...+|.+..|.+.... . .+..+ .-...+..|.+.... ..|..+-.+..|..+
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDde~-~~LyisEE~~Giw~~ 206 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADDEY-GSLYIAEEDEAIWKF 206 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEETTT-TEEEEEETTTEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeCCC-CcEEEecCccceEEE
Confidence 4667776 6654 3345666778999888774321 1 22233 234678999999988 667777777777667
Q ss_pred eCCCCCCC-CceEEEeec--CCCCeEEEEEeC--C-CCCEEEEEeCCCcEEEEECCCC
Q 039302 353 DLRLLKGG-DSVVAHFEY--HKHPVTSIEWSP--H-EGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 353 Dlr~~~~~-~~~~~~~~~--h~~~I~~v~~sp--~-~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+....... ...+....+ ....+-.|+.-. + .+.+|+|.-.+++..|||....
T Consensus 207 ~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 207 SAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp ESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 66533211 112222222 355677777643 2 3355666656899999998764
|