Citrus Sinensis ID: 039330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
NMVCLSLCTNDQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQRHTVMIDMVLAQSRFQTPPN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccccHEccccccccccc
Coil and Loop (DISEMBL)
nmvclslctndqficlvdspgkkssstpRVLSILSSVLERSIqknessskaskkkEVVTIFhcskapslsIRQYIERVFKysrcspscFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVttaaplhdgqrhTVMIDMVLAqsrfqtppn
Flexible Loop (DISEMBL)
nmvclslctNDQFICLVdspgkkssstprVLSILSSVlersiqknessskaskkkevvtifhcskapslsiRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQRHTVMIDMVLAQsrfqtppn
Low Complexity Region (SEG)
NMVCLSLCTNDQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNEssskaskkkEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGaaaeewwvttaaPLHDGQRHTVMIDMVLAQSRFQTPPN
Disordered region (IsUnstruct)
**VCLSLCTNDQFICLVD**************************************VVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQRHTVMIDMVLA*********
Disordered Region (DISOPRED)
******************************LSILSSVLERSI**********************KAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDM****************************************
Disordered Region (DISEMBL)
NMVCLSLCTNDQFICLVDSP*********VLSILSSVLE*****************VVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQRHTVMIDMVLAQSRFQTPPN
Disordered Region (DISPRO)
NMVCLSLCTNDQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQR*****D*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NMVCLSLCTNDQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQRHTVMIDMVLAQSRFQTPPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q75HV0	236	Cyclin-P3-1 OS=Oryza sati	yes	no	0.731	0.635	0.469	1e-36
O80513	202	Cyclin-U4-1 OS=Arabidopsi	no	no	0.673	0.683	0.431	6e-30
Q9SHD3	222	Cyclin-U2-1 OS=Arabidopsi	no	no	0.756	0.698	0.364	8e-30
Q9M205	230	Cyclin-U2-2 OS=Arabidopsi	no	no	0.765	0.682	0.363	1e-28
Q9LY16	216	Cyclin-U4-2 OS=Arabidopsi	no	no	0.678	0.643	0.428	2e-28
Q7XC35	212	Cyclin-P4-1 OS=Oryza sati	no	no	0.790	0.764	0.4	3e-28
Q9LJ45	210	Cyclin-U1-1 OS=Arabidopsi	no	no	0.790	0.771	0.370	6e-27
Q8LB60	221	Cyclin-U3-1 OS=Arabidopsi	no	no	0.770	0.714	0.408	5e-25
Q9FKF6	219	Cyclin-U4-3 OS=Arabidopsi	no	no	0.668	0.625	0.410	1e-24
Q7FAT5	217	Cyclin-P2-1 OS=Oryza sati	no	no	0.751	0.709	0.335	6e-20

>sp|Q75HV0|CCP31_ORYSJ Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 107/164 (65%), Gaps = 14/164 (8%)

Query: 17  VDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIE 76
           V    K ++  P+VL +L++ L+RS+QKNE    ++K K+  TIFH  +AP LSI+ Y E
Sbjct: 25  VSQSKKNNTEYPKVLLLLAAYLDRSVQKNEDLLDSNKIKDSSTIFHGHRAPDLSIKLYAE 84

Query: 77  RVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD------- 129
           R+FKYS CSPSCF++A IY++R+LQ+ +  +T L+VH LLITS +VAAKF DD       
Sbjct: 85  RIFKYSECSPSCFVLALIYMERYLQQPHVYMTSLSVHRLLITSVVVAAKFTDDAFFNNAF 144

Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
                   T EMN+LE++ LF L+ +L V  E F  YC QL+ E
Sbjct: 145 YARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKE 188

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1

 Score =  130 bits (327), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 15/153 (9%)

Query: 29  RVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSC 88
           ++++ LSS+LER  + N+ + + + + + V++FH    P+++I+ Y+ER+FKY+ CSPSC
Sbjct: 12  KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSC 71

Query: 89  FIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTAE 133
           F+VAY+YLDRF  R     +   NVH LLITS +VAAKF+DD               T E
Sbjct: 72  FVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKE 131

Query: 134 MNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
           MN LE++FLF L  +L+VT   F  Y S L  E
Sbjct: 132 MNFLELDFLFGLGFELNVTPNTFNAYFSYLQKE 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHD3|CCU21_ARATH Cyclin-U2-1 OS=Arabidopsis thaliana GN=CYCU2-1 PE=1 SV=1

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 15/170 (8%)

Query: 24  SSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSR 83
           S++ P V+S+LSS++ER++ +NE  S++        +F C + P ++I+ Y+ER+F+Y++
Sbjct: 24  SNTVPLVISVLSSLIERTLARNERISRSYGGFGKTRVFDCREIPDMTIQSYLERIFRYTK 83

Query: 84  CSPSCFIVAYIYLDRFLQRINGCLTRL-NVHHLLITSFLVAAKFVDD------------- 129
             PS ++VAY+Y+DRF Q   G    L NVH LLIT+ ++A+K+V+D             
Sbjct: 84  AGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLITTIMIASKYVEDMNYKNSYFAKVGG 143

Query: 130 -DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTA 178
            +T ++N LE+ FLF +  KLHV   VF  YC  L+ E +    + +  A
Sbjct: 144 LETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHLEREVSIGGGYQIEKA 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M205|CCU22_ARATH Cyclin-U2-2 OS=Arabidopsis thaliana GN=CYCU2-2 PE=1 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 19/176 (10%)

Query: 22  KKSSSTPRVLSILSSVLERSIQKNESSSK----ASKKKEVVTIFHCSKAPSLSIRQYIER 77
           + +S TP V+S+LSS+++R++ +NE  S+    +S       IF C + P ++I+ Y+ R
Sbjct: 24  QNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSGAGGKTQIFDCREIPDMTIQSYLGR 83

Query: 78  VFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRL-NVHHLLITSFLVAAKFVDD------- 129
           +F+Y++  PS ++VAY+Y+DRF Q   G    L NVH LLIT+ ++A+K+V+D       
Sbjct: 84  IFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLITTIMIASKYVEDLNYRNSY 143

Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTA 178
                  +T ++NKLE+ FLF +  KLHV   VF  YC  L+ E +    + +  A
Sbjct: 144 FAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHLEREVSFGGGYQIEKA 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY16|CCU42_ARATH Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 15/154 (9%)

Query: 28  PRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPS 87
           P V++ +SS+L+R  + N+  S+  ++ + ++ F+    PS+SIR Y+ER+FKY+ CS S
Sbjct: 21  PNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSDS 80

Query: 88  CFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTA 132
           C+IVAYIYLDRF+Q+     +   NVH L+ITS LV+AKF+DD               T 
Sbjct: 81  CYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGITTE 140

Query: 133 EMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
           EMN LE++FLF +  +L+VT   +  YCS L  E
Sbjct: 141 EMNLLELDFLFGIGFQLNVTISTYNDYCSSLQRE 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XC35|CCP41_ORYSJ Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 18/180 (10%)

Query: 21  GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVV---TIFHCSKAPSLSIRQYIER 77
           G+ + + PRV++ILSS+L+R  ++N++++ A+   E     + F     P++SI  Y+ER
Sbjct: 4   GEVAEAVPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLER 63

Query: 78  VFKYSRCSPSCFIVAYIYLDRFLQRING-CLTRLNVHHLLITSFLVAAKFVDD------- 129
           +F+++ CSPSC++VAYIYLDRFL+R     +   NVH LLITS L A KFVDD       
Sbjct: 64  IFRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAY 123

Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLH 182
                     EMN LE++FLF +   L+VT   FA YC+ L  E    E+        LH
Sbjct: 124 FARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQPPAVDLPRLH 183

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LJ45|CCU11_ARATH Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 108/178 (60%), Gaps = 16/178 (8%)

Query: 5   LSLCTNDQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKK-KEVVTIFHC 63
           L+   +D+   +V       ++TPRVL+I+S V+E+ + +NE  +K +K   + +  FH 
Sbjct: 2   LTAAGDDELDPVVGPESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHG 61

Query: 64  SKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCL-TRLNVHHLLITSFLV 122
            +APS+SI +Y+ER++KY++CSP+CF+V Y+Y+DR   +  G L   LNVH LL+T  ++
Sbjct: 62  VRAPSISIAKYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMI 121

Query: 123 AAKFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
           AAK +DD                A++NK+E+  LF L+ ++ V+  VF  YC  L+ E
Sbjct: 122 AAKILDDVHYNNEFYARVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKE 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LB60|CCU31_ARATH Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 96/174 (55%), Gaps = 16/174 (9%)

Query: 21  GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFK 80
           GK+    P VLS LSS LERS+  N          + VT+F     P +SI  Y++R+FK
Sbjct: 25  GKRLKKPPTVLSRLSSSLERSLLLNHDDKILLGSPDSVTVFDGRSPPEISIAHYLDRIFK 84

Query: 81  YSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD----------- 129
           YS CSPSCF++A+IY+D FL +    L  LNVH L+IT+ ++AAK  DD           
Sbjct: 85  YSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHRLIITTVMLAAKVFDDRYFNNAYYARV 144

Query: 130 ---DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAA--EEWWVTTA 178
               T E+N+LEM  LFTL+ KL V  + F  +C QL+ +       EW +  A
Sbjct: 145 GGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQNRDGFQIEWPIKEA 198

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKF6|CCU43_ARATH Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)

Query: 28  PRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPS 87
           P VL+ +S +L+R  + N++ S+  K      +      PS+SIR Y+ER+F+Y+ CS S
Sbjct: 23  PSVLTAMSYLLQRVSETNDNLSQKQKPSSFTGV----TKPSISIRSYLERIFEYANCSYS 78

Query: 88  CFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTA 132
           C+IVAYIYLDRF+++     +   NVH L+ITS LV+AKF+DD                 
Sbjct: 79  CYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGISRE 138

Query: 133 EMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGA 168
           EMN LE++FLF +  +L+VT   F  YC  L  E A
Sbjct: 139 EMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMA 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q7FAT5|CCP21_ORYSJ Cyclin-P2-1 OS=Oryza sativa subsp. japonica GN=CYCP2-1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 19/173 (10%)

Query: 21  GKKSSSTPRVLSILSSVLERSIQKNE---SSSKASKKKEVVTIFHCSKAPSLSIRQYIER 77
           G  + STP V+S+L+S+LER I +NE   +++   +       F       +S+  ++ER
Sbjct: 19  GTTALSTPVVVSVLASLLERHIARNERDQAAAADGEAARRARAFDSGTVLDMSLHAFLER 78

Query: 78  VFKYSRCSPSCFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD------- 129
             +Y+  SP  ++VAY YLDR L+R +G  +   N   LL T+ LVA+KFV+D       
Sbjct: 79  FSRYANVSPQVYVVAYAYLDR-LRRGDGVRVVSANAQRLLTTAILVASKFVEDRNYKNSY 137

Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWV 175
                    AE++ LE++FLF ++ +L+V+  VF  YC  L+ E +    + V
Sbjct: 138 FAAVGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLEREVSYGGGYQV 190

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
255542622	221	cyclin-dependent protein kinase, putativ	0.770	0.714	0.522	2e-45
225436916	226	PREDICTED: cyclin-P3-1-like isoform 1 [V	0.731	0.663	0.573	3e-44
225436914	247	PREDICTED: cyclin-P3-1-like isoform 2 [V	0.731	0.607	0.573	3e-44
255559444	219	cyclin-dependent protein kinase, putativ	0.741	0.694	0.524	1e-42
224082636	219	predicted protein [Populus trichocarpa]	0.702	0.657	0.512	6e-40
356572186	246	PREDICTED: cyclin-P3-1-like [Glycine max	0.819	0.682	0.5	1e-39
150036253	216	cyclin-dependent kinase [Cucumis melo su	0.780	0.740	0.525	3e-39
255645377	246	unknown [Glycine max]	0.819	0.682	0.5	3e-39
224066505	219	predicted protein [Populus trichocarpa]	0.687	0.643	0.516	6e-39
356503545	267	PREDICTED: cyclin-P3-1-like [Glycine max	0.819	0.629	0.489	1e-38

>gi|255542622|ref|XP_002512374.1| cyclin-dependent protein kinase, putative [Ricinus communis] gi|223548335|gb|EEF49826.1| cyclin-dependent protein kinase, putative [Ricinus communis]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 124/176 (70%), Gaps = 18/176 (10%)

Query: 21  GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFK 80
           G + S TPRVL +L+SVLERS QKN+   + S++K+VVT+FH S++PSLSIRQYIERVFK
Sbjct: 19  GGRISGTPRVLLLLASVLERSTQKNDRLLEGSRRKDVVTVFHGSRSPSLSIRQYIERVFK 78

Query: 81  YSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD---------- 130
           Y++CS SCF+VAYIY++RFL+R++ CLT LNVH LLITS ++AAKF+DD+          
Sbjct: 79  YTKCSTSCFVVAYIYVERFLRRMDACLTSLNVHRLLITSIMLAAKFLDDECYNNAYYAKV 138

Query: 131 ----TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLH 182
               T EMN++E   LF L+ +L VT E F  YC +L+ E     E+ +    P+H
Sbjct: 139 GGVSTPEMNRMETKLLFNLDFRLQVTVEAFRSYCLKLERE--CGGEYRI--ERPIH 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436916|ref|XP_002274682.1| PREDICTED: cyclin-P3-1-like isoform 1 [Vitis vinifera]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 119/164 (72%), Gaps = 14/164 (8%)

Query: 21  GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFK 80
           GK    TPRVL +LSS+LERS+QKNE+  + ++ K+ +TIFH S+AP+LS+RQYI+R+FK
Sbjct: 34  GKGVIGTPRVLLLLSSLLERSVQKNETLLETAQIKDAITIFHGSRAPTLSVRQYIDRIFK 93

Query: 81  YSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD----------- 129
           YS CSPSCF+VA+IY+DRFLQ  +  LT LNVH LLITS +VAAKF+DD           
Sbjct: 94  YSGCSPSCFVVAHIYVDRFLQHTDAHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYAKV 153

Query: 130 ---DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAA 170
               TAE+N+LEM FLF+L+ +L VT E F  YCSQLD E A  
Sbjct: 154 GGVSTAELNRLEMKFLFSLDFRLQVTVETFRSYCSQLDKEVAGG 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436914|ref|XP_002274732.1| PREDICTED: cyclin-P3-1-like isoform 2 [Vitis vinifera]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 119/164 (72%), Gaps = 14/164 (8%)

Query: 21  GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFK 80
           GK    TPRVL +LSS+LERS+QKNE+  + ++ K+ +TIFH S+AP+LS+RQYI+R+FK
Sbjct: 55  GKGVIGTPRVLLLLSSLLERSVQKNETLLETAQIKDAITIFHGSRAPTLSVRQYIDRIFK 114

Query: 81  YSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD----------- 129
           YS CSPSCF+VA+IY+DRFLQ  +  LT LNVH LLITS +VAAKF+DD           
Sbjct: 115 YSGCSPSCFVVAHIYVDRFLQHTDAHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYAKV 174

Query: 130 ---DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAA 170
               TAE+N+LEM FLF+L+ +L VT E F  YCSQLD E A  
Sbjct: 175 GGVSTAELNRLEMKFLFSLDFRLQVTVETFRSYCSQLDKEVAGG 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559444|ref|XP_002520742.1| cyclin-dependent protein kinase, putative [Ricinus communis] gi|223540127|gb|EEF41704.1| cyclin-dependent protein kinase, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 116/166 (69%), Gaps = 14/166 (8%)

Query: 21  GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFK 80
           GK+   TPR L++LSS+LERS+QKNE   + ++  +  T FH S+AP++SIRQYI+R+FK
Sbjct: 25  GKRILGTPRALTLLSSLLERSVQKNEMLLETTQINDSRTEFHGSRAPTVSIRQYIDRIFK 84

Query: 81  YSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD----------- 129
           YS CSPSCFIVA+IY+DRF+Q  +  LT LNVH LLITS +VAAKF+DD           
Sbjct: 85  YSGCSPSCFIVAHIYVDRFIQNTDIHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYAKV 144

Query: 130 ---DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEE 172
               T E+NKLEM FLF+++ +L V+   F +YCSQL+ E A   +
Sbjct: 145 GGVSTEELNKLEMKFLFSIDFRLQVSVNTFGRYCSQLEKEAAEGHQ 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082636|ref|XP_002306774.1| predicted protein [Populus trichocarpa] gi|222856223|gb|EEE93770.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 14/158 (8%)

Query: 27  TPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSP 86
           +PRVL +LSS+L+RS+QKNE   + ++ K+VVTIFH  + P++SIR Y++R+FKYS CSP
Sbjct: 31  SPRVLMLLSSLLDRSVQKNEMLLETTQIKDVVTIFHGLRPPTVSIRNYVDRIFKYSACSP 90

Query: 87  SCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD--------------DTA 132
           SCF+VA+IY+DRFLQ+ +  LT LNVH LLITS ++AAKFVDD               T 
Sbjct: 91  SCFVVAHIYMDRFLQQTDIHLTALNVHRLLITSVMIAAKFVDDAFFNNAYYAKVGGVSTE 150

Query: 133 EMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAA 170
           E+N+LEM FLF+++ +L V    F K+C QL+ E    
Sbjct: 151 ELNRLEMKFLFSIDFRLQVNVNTFGKHCYQLEKESVGG 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572186|ref|XP_003554251.1| PREDICTED: cyclin-P3-1-like [Glycine max]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 126/186 (67%), Gaps = 18/186 (9%)

Query: 1   NMVCLSLCTNDQFICLVDSPGKKSS----STPRVLSILSSVLERSIQKNESSSKASKKKE 56
           +M  L+L T D    +  S G K S      PRVLS+LSS+LERS+Q+NE+S +A   K+
Sbjct: 29  DMGSLALETEDVISDIYLSLGLKESDKGVGGPRVLSLLSSLLERSVQRNETSLEAKHIKD 88

Query: 57  VVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLL 116
           VVT+FH  +AP+LS+R+YI+R+FKYS CSPSCF+VA+IY+DRF+Q     LT LNVH LL
Sbjct: 89  VVTVFHGLRAPTLSVRKYIDRIFKYSGCSPSCFVVAHIYVDRFIQHTEIKLTSLNVHRLL 148

Query: 117 ITSFLVAAKFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQ 162
           ITS ++AAKF+DD               T+E+N+ EM+FLF ++ +L V  E F +YC Q
Sbjct: 149 ITSIMLAAKFIDDAFYNNAYYAKVGGVSTSELNRFEMSFLFGIDFRLQVGVETFGRYCRQ 208

Query: 163 LDMEGA 168
           L+ E A
Sbjct: 209 LEKEAA 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150036253|gb|ABR67416.1| cyclin-dependent kinase [Cucumis melo subsp. melo]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 117/175 (66%), Gaps = 15/175 (8%)

Query: 11  DQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLS 70
           D  + L +S GK  SS+P+VLSILSSV ERSIQKNE   K  KKK+ VTIFH S+AP++ 
Sbjct: 16  DSLLGLSES-GKLISSSPQVLSILSSVFERSIQKNEKLLKRLKKKDNVTIFHSSRAPTMG 74

Query: 71  IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD 130
           I QYI+R+ KY+ C  +C IVAYIY++R+LQ+++  LT LNVH LLITS +VAAKF D  
Sbjct: 75  IGQYIDRILKYTCCGTACLIVAYIYIERYLQKMDVYLTSLNVHRLLITSIMVAAKFTDAG 134

Query: 131 --------------TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAE 171
                         T EMN LE+ FLF L+ +LHVT +VF+ +C QL  E    E
Sbjct: 135 CYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGGE 189

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645377|gb|ACU23185.1| unknown [Glycine max]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 125/186 (67%), Gaps = 18/186 (9%)

Query: 1   NMVCLSLCTNDQFICLVDSPGKKSS----STPRVLSILSSVLERSIQKNESSSKASKKKE 56
           +M  L+L T D    +  S G K S      PRVLS+LSS+LERS+Q+NE+S +A   K+
Sbjct: 29  DMGSLALETEDVISDIYLSLGLKESDKGVGGPRVLSLLSSLLERSVQRNETSLEAKHIKD 88

Query: 57  VVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLL 116
           VVT+FH  +AP+LS+R+YI+R+FKYS CSPSCF+VA+IY+DRF+Q     LT LNVH LL
Sbjct: 89  VVTVFHGLRAPTLSVRKYIDRIFKYSGCSPSCFVVAHIYVDRFIQHTEIKLTSLNVHRLL 148

Query: 117 ITSFLVAAKFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQ 162
           ITS ++AAKF+DD               T E+N+ EM+FLF ++ +L V  E F +YC Q
Sbjct: 149 ITSIMLAAKFIDDAFYNNAYYAKVGGVSTFELNRFEMSFLFGIDFRLQVGVETFGRYCRQ 208

Query: 163 LDMEGA 168
           L+ E A
Sbjct: 209 LEKEAA 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066505|ref|XP_002302113.1| predicted protein [Populus trichocarpa] gi|222843839|gb|EEE81386.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 110/155 (70%), Gaps = 14/155 (9%)

Query: 28  PRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPS 87
           PRVL +LSS+LERS+QKNE   + ++ K+VVTIFH  + P +SI+QY++R+FKYS CSPS
Sbjct: 32  PRVLMLLSSLLERSVQKNEILMEKTQIKDVVTIFHGLRPPPVSIQQYVDRIFKYSACSPS 91

Query: 88  CFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD--------------DTAE 133
           CF+VA++Y+DRFLQ+ +  LT LNVH LLITS ++AAKFVDD                 E
Sbjct: 92  CFVVAHVYVDRFLQQTDIHLTSLNVHRLLITSVMIAAKFVDDAFFNNAYYARVGGVSKEE 151

Query: 134 MNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGA 168
           +N+LEM FLF+++ +L V    F KYC +L+ E +
Sbjct: 152 LNRLEMKFLFSIDFRLQVNVNTFGKYCYRLEKESS 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503545|ref|XP_003520568.1| PREDICTED: cyclin-P3-1-like [Glycine max]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 126/186 (67%), Gaps = 18/186 (9%)

Query: 1   NMVCLSLCTNDQFICLVDSPGKKSS----STPRVLSILSSVLERSIQKNESSSKASKKKE 56
           +M  L+L T D    +  S G K S      PRVLS+LSS+LERS+Q+NE+  +A   K+
Sbjct: 50  DMASLALETEDVISDIYLSLGLKESDKGVGVPRVLSLLSSLLERSVQRNETLLEAKHVKD 109

Query: 57  VVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLL 116
           VVT+FH  +AP+LS+R+YI+R+FKYS CSPSCF+VA+IY+DRF+Q     LT LNVH LL
Sbjct: 110 VVTVFHGLRAPTLSVRKYIDRIFKYSGCSPSCFVVAHIYVDRFIQHTEIKLTSLNVHRLL 169

Query: 117 ITSFLVAAKFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQ 162
           ITS ++AAKF+DD               T+E+N+LEM+FLF ++ +L  + + F +YC Q
Sbjct: 170 ITSIMLAAKFIDDAFYNNAYYAKVGGVSTSELNRLEMSFLFGIDFRLQFSVDTFGRYCRQ 229

Query: 163 LDMEGA 168
           L+ E A
Sbjct: 230 LEKEAA 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2099192	221	CYCP1;1 "cyclin p1;1" [Arabido	0.712	0.660	0.425	3.9e-28
TAIR|locus:2055552	222	cycp3;1 "cyclin p3;1" [Arabido	0.697	0.644	0.379	2.2e-27
TAIR|locus:2088743	210	CYCP2;1 "cyclin p2;1" [Arabido	0.790	0.771	0.359	2.8e-27
TAIR|locus:2042421	202	CYCP4;1 "AT2G44740" [Arabidops	0.673	0.683	0.431	4.5e-27
TAIR|locus:2103391	230	CYCP3;2 "cyclin p3;2" [Arabido	0.707	0.630	0.371	8.4e-26
TAIR|locus:2183394	216	CYCP4;3 "cyclin p4;3" [Arabido	0.678	0.643	0.422	1.8e-25
TAIR|locus:1009023243	212	AT3G05327 [Arabidopsis thalian	0.551	0.533	0.487	2.3e-23
TAIR|locus:2151656	219	CYCP4;2 "CYCLIN P4;2" [Arabido	0.658	0.616	0.402	9e-22
DICTYBASE|DDB_G0280425	333	DDB_G0280425 [Dictyostelium di	0.492	0.303	0.347	1.6e-14
DICTYBASE|DDB_G0286485	398	DDB_G0286485 "PHO85 cyclin-2"	0.463	0.238	0.366	3.8e-14

TAIR|locus:2099192 CYCP1;1 "cyclin p1;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 68/160 (42%), Positives = 92/160 (57%)

Query:    21 GKKSSSTPRVLSILSSVLERSIQKNEXXXXXXXXXEVVTIFHCSKAPSLSIRQYIERVFK 80
             GK+    P VLS LSS LERS+  N          + VT+F     P +SI  Y++R+FK
Sbjct:    25 GKRLKKPPTVLSRLSSSLERSLLLNHDDKILLGSPDSVTVFDGRSPPEISIAHYLDRIFK 84

Query:    81 YSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD----------- 129
             YS CSPSCF++A+IY+D FL +    L  LNVH L+IT+ ++AAK  DD           
Sbjct:    85 YSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHRLIITTVMLAAKVFDDRYFNNAYYARV 144

Query:   130 ---DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
                 T E+N+LEM  LFTL+ KL V  + F  +C QL+ +
Sbjct:   145 GGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQ 184

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0019901 "protein kinase binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0010440 "stomatal lineage progression" evidence=RCA

TAIR|locus:2055552 cycp3;1 "cyclin p3;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 60/158 (37%), Positives = 95/158 (60%)

Query:    24 SSSTPRVLSILSSVLERSIQKNEXXXXXXXXXEVVTIFHCSKAPSLSIRQYIERVFKYSR 83
             S++ P V+S+LSS++ER++ +NE             +F C + P ++I+ Y+ER+F+Y++
Sbjct:    24 SNTVPLVISVLSSLIERTLARNERISRSYGGFGKTRVFDCREIPDMTIQSYLERIFRYTK 83

Query:    84 CSPSCFIVAYIYLDRFLQRINGCLTRL-NVHHLLITSFLVAAKFVDD------------- 129
               PS ++VAY+Y+DRF Q   G    L NVH LLIT+ ++A+K+V+D             
Sbjct:    84 AGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLITTIMIASKYVEDMNYKNSYFAKVGG 143

Query:   130 -DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
              +T ++N LE+ FLF +  KLHV   VF  YC  L+ E
Sbjct:   144 LETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHLERE 181

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0019901 "protein kinase binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0010440 "stomatal lineage progression" evidence=RCA

TAIR|locus:2088743 CYCP2;1 "cyclin p2;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 64/178 (35%), Positives = 104/178 (58%)

Query:     5 LSLCTNDQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNE-XXXXXXXXXEVVTIFHC 63
             L+   +D+   +V       ++TPRVL+I+S V+E+ + +NE          + +  FH 
Sbjct:     2 LTAAGDDELDPVVGPESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHG 61

Query:    64 SKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLT-RLNVHHLLITSFLV 122
              +APS+SI +Y+ER++KY++CSP+CF+V Y+Y+DR   +  G L   LNVH LL+T  ++
Sbjct:    62 VRAPSISIAKYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMI 121

Query:   123 AAKFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
             AAK +DD                A++NK+E+  LF L+ ++ V+  VF  YC  L+ E
Sbjct:   122 AAKILDDVHYNNEFYARVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKE 179

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0019901 "protein kinase binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010440 "stomatal lineage progression" evidence=RCA

TAIR|locus:2042421 CYCP4;1 "AT2G44740" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/153 (43%), Positives = 92/153 (60%)

Query:    29 RVLSILSSVLERSIQKNEXXXXXXXXXEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSC 88
             ++++ LSS+LER  + N+         + V++FH    P+++I+ Y+ER+FKY+ CSPSC
Sbjct:    12 KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSC 71

Query:    89 FIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTAE 133
             F+VAY+YLDRF  R     +   NVH LLITS +VAAKF+DD               T E
Sbjct:    72 FVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKE 131

Query:   134 MNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
             MN LE++FLF L  +L+VT   F  Y S L  E
Sbjct:   132 MNFLELDFLFGLGFELNVTPNTFNAYFSYLQKE 164

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010440 "stomatal lineage progression" evidence=RCA

TAIR|locus:2103391 CYCP3;2 "cyclin p3;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 61/164 (37%), Positives = 96/164 (58%)

Query:    22 KKSSSTPRVLSILSSVLERSIQKNEXXXXXXXXXE----VVTIFHCSKAPSLSIRQYIER 77
             + +S TP V+S+LSS+++R++ +NE                 IF C + P ++I+ Y+ R
Sbjct:    24 QNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSGAGGKTQIFDCREIPDMTIQSYLGR 83

Query:    78 VFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRL-NVHHLLITSFLVAAKFVDD------- 129
             +F+Y++  PS ++VAY+Y+DRF Q   G    L NVH LLIT+ ++A+K+V+D       
Sbjct:    84 IFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLITTIMIASKYVEDLNYRNSY 143

Query:   130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
                    +T ++NKLE+ FLF +  KLHV   VF  YC  L+ E
Sbjct:   144 FAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHLERE 187

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0019901 "protein kinase binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0010440 "stomatal lineage progression" evidence=RCA

TAIR|locus:2183394 CYCP4;3 "cyclin p4;3" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 65/154 (42%), Positives = 93/154 (60%)

Query:    28 PRVLSILSSVLERSIQKNEXXXXXXXXXEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPS 87
             P V++ +SS+L+R  + N+         + ++ F+    PS+SIR Y+ER+FKY+ CS S
Sbjct:    21 PNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSDS 80

Query:    88 CFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTA 132
             C+IVAYIYLDRF+Q+     +   NVH L+ITS LV+AKF+DD               T 
Sbjct:    81 CYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGITTE 140

Query:   133 EMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
             EMN LE++FLF +  +L+VT   +  YCS L  E
Sbjct:   141 EMNLLELDFLFGIGFQLNVTISTYNDYCSSLQRE 174

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0019901 "protein kinase binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0010440 "stomatal lineage progression" evidence=RCA

TAIR|locus:1009023243 AT3G05327 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 58/119 (48%), Positives = 79/119 (66%)

Query:    16 LVDSPGKKSSSTPRVLSILSSVLERSIQKNEXXXXXXXX-XEVVTIFHCSKAPSLSIRQY 74
             L DS     S+ PRV+++L+S LE+ IQKN+          + +T+FH SKAPSLSI +Y
Sbjct:    19 LEDSDQPPDSTPPRVITLLASTLEKMIQKNKKKFHTRHNKADEITMFHGSKAPSLSIYRY 78

Query:    75 IERVFKYSRCSPSCFIVAYIYLDRFLQRINGC-----LTRLNVHHLLITSFLVAAKFVD 128
              ER+ +Y++CSP CF+ A+ Y+ R+LQR         LT LNVH LLITS LVAAKF++
Sbjct:    79 TERIHRYAQCSPVCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVAAKFLE 137

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0019901 "protein kinase binding" evidence=IEA

GO:0010440 "stomatal lineage progression" evidence=RCA

TAIR|locus:2151656 CYCP4;2 "CYCLIN P4;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 62/154 (40%), Positives = 88/154 (57%)

Query:    28 PRVLSILSSVLERSIQKNEXXXXXXXXXEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPS 87
             P VL+ +S +L+R  + N+             +   +K PS+SIR Y+ER+F+Y+ CS S
Sbjct:    23 PSVLTAMSYLLQRVSETNDNLSQKQKPSSFTGV---TK-PSISIRSYLERIFEYANCSYS 78

Query:    88 CFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTA 132
             C+IVAYIYLDRF+++     +   NVH L+ITS LV+AKF+DD                 
Sbjct:    79 CYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGISRE 138

Query:   133 EMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
             EMN LE++FLF +  +L+VT   F  YC  L  E
Sbjct:   139 EMNMLELDFLFGIGFELNVTVSTFNNYCCFLQRE 172

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0019901 "protein kinase binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

DICTYBASE|DDB_G0280425 DDB_G0280425 [Dictyostelium discoideum (taxid:44689)]

 Score = 189 (71.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 40/115 (34%), Positives = 65/115 (56%)

Query:    64 SKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVA 123
             S+ P +SI +Y+ R+ K+S CS  CFI+  +Y+DR + + N  +   N+H LLIT+ +VA
Sbjct:   107 SEVPKISITEYLTRLVKFSPCSKECFIMIIVYIDRIISKTNFIINSFNIHRLLITAIMVA 166

Query:   124 AKFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLD 164
             +K++DD                 E+N+LE++FL  L+  L      +  Y S+LD
Sbjct:   167 SKYIDDIFYNNEYYSHIGGVTRDELNRLEISFLNLLQFDLSCPLPDYLDYFSKLD 221

GO:0019901 "protein kinase binding" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

DICTYBASE|DDB_G0286485 DDB_G0286485 "PHO85 cyclin-2" [Dictyostelium discoideum (taxid:44689)]

 Score = 188 (71.2 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 40/109 (36%), Positives = 61/109 (55%)

Query:    65 KAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAA 124
             K P ++I  YI R+ KYS CS  CFI+  +Y+DR +Q+ N  +   N+H +LIT  LVAA
Sbjct:   126 KLPMITIEGYISRIIKYSPCSKECFIIILMYIDRLIQKRNFIVNSYNIHRILITCVLVAA 185

Query:   125 KFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKY 159
             K++DD                 E+N +E++FL  L   +   T+V++ Y
Sbjct:   186 KYLDDIFYNNQFYSQVGGVSVKEINVMELDFLKLLSFDVSANTDVYSVY 234

GO:0019901 "protein kinase binding" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_V1250 SubName- Full=Putative uncharacterized protein; (219 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam08613	140	pfam08613, Cyclin, Cyclin	6e-23
pfam00134	127	pfam00134, Cyclin_N, Cyclin, N-terminal domain	1e-08

>gnl|CDD|204002 pfam08613, Cyclin, Cyclin

 Score = 89.4 bits (222), Expect = 6e-23
 Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 18/140 (12%)

Query: 28  PRVLSILSSVLERSIQKNESSS-KASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSP 86
             ++  +S VL+R    N+S++  +S     +  F+    PS+S+ QY+ R+ KY   SP
Sbjct: 1   DELIESISRVLDRIPALNDSTATASSSASSPLEPFYSKAVPSISLTQYLSRIQKYCPTSP 60

Query: 87  SCFIVAYIYLDRFLQRI---NGCLTRLNVHHLLITSFLVAAKFVDD-------------- 129
              + A IYLDR ++R       +T LNVH LL+T+  VA KF+ D              
Sbjct: 61  DVLLSALIYLDRIVKRCDKPTITVTSLNVHRLLLTALTVATKFLSDGSYSNSRFAKVGGI 120

Query: 130 DTAEMNKLEMNFLFTLELKL 149
              E+N LE++FLF ++  L
Sbjct: 121 SLHELNHLEIDFLFLVDFDL 140

This family includes many different cyclin proteins. Members include the G1/S-specific cyclin pas1, and the phosphate system cyclin PHO80/PHO85. Length = 140

>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 74  YIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKF------- 126
           ++  V +  +  P    +A  YLDRFL +      R  +  + +T  L+AAK+       
Sbjct: 37  WLVEVHEEFKLLPETLYLAVNYLDRFLSKQPV--PRTKLQLVGVTCLLIAAKYEEIYPPS 94

Query: 127 ------VDDDT---AEMNKLEMNFLFTLELKL 149
                 + D+     E+ ++E+  L TL   L
Sbjct: 95  VEDFVYITDNAYTKEEILRMELLILSTLNWDL 126

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF08613	149	Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu	99.96
KOG1674	218	consensus Cyclin [General function prediction only	99.91
KOG1675	343	consensus Predicted cyclin [General function predi	99.69
PF00134	127	Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR	99.15
cd00043	88	CYCLIN Cyclin box fold. Protein binding domain fun	98.09
KOG0656	335	consensus G1/S-specific cyclin D [Cell cycle contr	98.03
smart00385	83	CYCLIN domain present in cyclins, TFIIB and Retino	97.76
KOG0653	391	consensus Cyclin B and related kinase-activating p	97.32
TIGR00569	305	ccl1 cyclin ccl1. University).	97.09
KOG4164	497	consensus Cyclin ik3-1/CABLES [Cell cycle control,	96.88
KOG0655	408	consensus G1/S-specific cyclin E [Cell cycle contr	96.54
COG5333	297	CCL1 Cdk activating kinase (CAK)/RNA polymerase II	95.95
COG5024	440	Cyclin [Cell division and chromosome partitioning]	95.33
KOG0834	323	consensus CDK9 kinase-activating protein cyclin T	93.78
KOG0835	367	consensus Cyclin L [General function prediction on	92.58
KOG0794	264	consensus CDK8 kinase-activating protein cyclin C	88.96

>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs)

Probab=99.96  E-value=3.5e-29  Score=201.41  Aligned_cols=121  Identities=40%  Similarity=0.755  Sum_probs=90.9

Q ss_pred             hhHHHHHHHHHHHHHhhcCCccccc----------cccccccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 039330           29 RVLSILSSVLERSIQKNESSSKASK----------KKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDR   98 (205)
Q Consensus        29 ~ll~~ia~~Le~li~~nd~~~~~~~----------~~~~~t~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidR   98 (205)
                      +++..|+.++++++..|+.....++          ..+..+.|++..+|++++.+|+.||+++++|+++|+++|++||+|
T Consensus         2 ~~~~~i~~~l~~~~~~n~~~~~~s~~~~~~~~~~~~~~~~~~F~~~~~p~i~i~~fl~ri~~~~~~s~~~~i~aliYl~R   81 (149)
T PF08613_consen    2 KLVQSIARQLDRLINNNESTAQSSSSSSSPSSPFQQSPKISQFHSQSVPSISIRDFLSRILKYTQCSPECLILALIYLDR   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------------T---------T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCchhhhhcccccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            5899999999999999987654321          234567899999999999999999999999999999999999999


Q ss_pred             Hhh---ccCccccccchHHHHHHHHHhhhcccccc--------------HHHHHHHHHHHHHhCCCce
Q 039330           99 FLQ---RINGCLTRLNVHHLLITSFLVAAKFVDDD--------------TAEMNKLEMNFLFTLELKL  149 (205)
Q Consensus        99 l~~---~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------~~ELN~LE~~FL~~Ldf~L  149 (205)
                      +.+   .+++.+++.||||||++|+|+|+||+||.              ++|||.||++||++|||+|
T Consensus        82 l~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis~~eln~lE~~fL~~l~~~L  149 (149)
T PF08613_consen   82 LRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGISLKELNELEREFLKLLDYNL  149 (149)
T ss_dssp             HHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT--
T ss_pred             HHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCCHHHHHHHHHHHHHHCCCcC
Confidence            999   58899999999999999999999999998              9999999999999999997

Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.

>KOG1674 consensus Cyclin [General function prediction only]

Probab=99.91  E-value=3e-24  Score=183.20  Aligned_cols=151  Identities=43%  Similarity=0.719  Sum_probs=137.1

Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHhhcCCccc--cccccccccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 039330           21 GKKSSSTPRVLSILSSVLERSIQKNESSSKA--SKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDR   98 (205)
Q Consensus        21 ~~~~~~~p~ll~~ia~~Le~li~~nd~~~~~--~~~~~~~t~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidR   98 (205)
                      +...+.+|.++..++.++++....|+....+  ......++.|++...|+|++.+|++||.+|++|+++|+|+|++|+||
T Consensus        26 ~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yleri~k~~~~s~~~lv~al~Yldr  105 (218)
T KOG1674|consen   26 GRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYLERIFKYSKCSPECLVLALVYLDR  105 (218)
T ss_pred             cccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHHHHHHHHhcCCchhhhhhhhhhhh
Confidence            5566778999999999999999999866532  22345688999999999999999999999999999999999999999


Q ss_pred             Hhhc-------cCccccccc-hHHHHHHHHHhhhcccccc--------------HHHHHHHHHHHHHhCCCceeeCHHHH
Q 039330           99 FLQR-------INGCLTRLN-VHHLLITSFLVAAKFVDDD--------------TAEMNKLEMNFLFTLELKLHVTTEVF  156 (205)
Q Consensus        99 l~~~-------~~~~l~~~n-~hRL~ltal~lAsK~~dD~--------------~~ELN~LE~~FL~~Ldf~L~Vs~eef  156 (205)
                      +.++       +...+++.| +||++++++++|+||.+|.              .+|||.||.+||+.+||+|.|+.++|
T Consensus       106 ~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~vggl~~~eln~lE~~~l~~~~~~l~i~~~~~  185 (218)
T KOG1674|consen  106 FVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKVGGLTTDELNKLELDLLFLLDFRLIISRSEF  185 (218)
T ss_pred             hhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHhCCCChHhhhhhhHHHHhhCCeEEEechhHH
Confidence            9985       678889999 9999999999999999998              99999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 039330          157 AKYCSQLDMEGAAAE  171 (205)
Q Consensus       157 ~~y~~~L~~~~~~~~  171 (205)
                      ..|+..++++....+
T Consensus       186 ~~~~~~~~~~~~~~~  200 (218)
T KOG1674|consen  186 NLYEDLLEREENLNK  200 (218)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998877664

>KOG1675 consensus Predicted cyclin [General function prediction only]

Probab=99.69  E-value=1.9e-17  Score=146.15  Aligned_cols=122  Identities=23%  Similarity=0.404  Sum_probs=113.4

Q ss_pred             CCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc---------------
Q 039330           66 APSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD---------------  130 (205)
Q Consensus        66 ~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~---------------  130 (205)
                      +|..-+..|+.-.+.++.++.+|-++.|+|++|+..-.+...+|.||+|..+.++++|+|.|+|.               
T Consensus       188 ~~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd~t  267 (343)
T KOG1675|consen  188 PGLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKDQS  267 (343)
T ss_pred             cchhheehhhhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhhcc
Confidence            34456888999999999999999999999999999877777899999999999999999999998               


Q ss_pred             HHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHHhhhhcccccccccccCCcCcchhH
Q 039330          131 TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQRHTV  189 (205)
Q Consensus       131 ~~ELN~LE~~FL~~Ldf~L~Vs~eef~~y~~~L~~~~~~~~~~~~~~~~pl~~~~~~~~  189 (205)
                      +++||.|||+||.+|+||+.|...+|.+||+.|+ .++.+++..|+ +.|++|+..+..
T Consensus       268 veDmNe~ERqfLelLqfNinvp~svYAKyYfdlr-~Lae~n~L~f~-~ePlsKeRaqkl  324 (343)
T KOG1675|consen  268 VDDMNALERQFLELLQFNINVPSSEYAKYYFDLR-CLAEANPLLFP-CEPLSKERAQKL  324 (343)
T ss_pred             HhhHHHHHHHHHHHHhhccCccHHHHHHHHHHHh-hhccccccccc-cccchhhHHHHH
Confidence            8899999999999999999999999999999998 78999999999 999999887765

>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs)

Probab=99.15  E-value=2.9e-10  Score=86.89  Aligned_cols=79  Identities=22%  Similarity=0.415  Sum_probs=69.3

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+|+.++....+++++++..|+.|+||+..+..  +...+++.+.++|+++|+|+.++.                .++
T Consensus        33 ~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~--~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~  110 (127)
T PF00134_consen   33 IIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRP--VNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKKD  110 (127)
T ss_dssp             HHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS---TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHH
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcc--cccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHH
Confidence            57889999999999999999999999999988543  678899999999999999999995                899


Q ss_pred             HHHHHHHHHHhCCCcee
Q 039330          134 MNKLEMNFLFTLELKLH  150 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~  150 (205)
                      +..||+.+|..|+|+|+
T Consensus       111 i~~~E~~iL~~L~f~ln  127 (127)
T PF00134_consen  111 ILEMEREILSALNFDLN  127 (127)
T ss_dssp             HHHHHHHHHHHTTT---
T ss_pred             HHHHHHHHHHHCCCCcC
Confidence            99999999999999984

Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....

>cd00043 CYCLIN Cyclin box fold

Probab=98.09  E-value=2.4e-05  Score=54.53  Aligned_cols=59  Identities=24%  Similarity=0.233  Sum_probs=52.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD  130 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~  130 (205)
                      ...+|+.++.+..++++++...|..|+||+.....+  ...+.+.+..+|+.+|+|+.++.
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ia~a~l~lA~k~~~~~   62 (88)
T cd00043           4 TPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSV--LGRSPSLVAAAALYLAAKVEEIP   62 (88)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccCChHHHHHHHHHHHHHHcCCC
Confidence            457899999999999999999999999999885443  48899999999999999998885

Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.

>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=2.6e-05  Score=70.77  Aligned_cols=93  Identities=25%  Similarity=0.329  Sum_probs=76.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcc-ccccchHHHHHHHHHhhhcccccc-----------------H
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDDD-----------------T  131 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~-l~~~n~hRL~ltal~lAsK~~dD~-----------------~  131 (205)
                      -..++|-++.++-+|+++|+.+|.-|+||+.....+. -.++-..-|-++|+-+|+|+-+-.                 .
T Consensus        80 ~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~fea  159 (335)
T KOG0656|consen   80 QALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEA  159 (335)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccH
Confidence            3468999999999999999999999999999743322 134445678889999999986643                 8


Q ss_pred             HHHHHHHHHHHHhCCCcee-eCHHHHHHHHHH
Q 039330          132 AEMNKLEMNFLFTLELKLH-VTTEVFAKYCSQ  162 (205)
Q Consensus       132 ~ELN~LE~~FL~~Ldf~L~-Vs~eef~~y~~~  162 (205)
                      +.+-+||+-.|..|+|++. |++-.|-.|.-.
T Consensus       160 ktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~  191 (335)
T KOG0656|consen  160 KTIQRMELLVLSTLKWRLRAVTPFSFIDHFLS  191 (335)
T ss_pred             HHHHHHHHHHHhhccccccCCCchHHHHHHHH
Confidence            9999999999999999998 899888877543

>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma

Probab=97.76  E-value=0.00015  Score=49.93  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc
Q 039330           73 QYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD  130 (205)
Q Consensus        73 ~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~  130 (205)
                      +|+.++.+..++++++.-.|..|+||+....++  ...+.+.+..+|+.+|+|..+..
T Consensus         1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~--~~~~~~~ia~a~l~lA~k~~~~~   56 (83)
T smart00385        1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKF--LKYSPSLIAAAALYLAAKTEEIP   56 (83)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc--ccCCHHHHHHHHHHHHHHHhcCC
Confidence            489999999999999999999999999885333  34889999999999999988765

A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.

>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.32  E-value=0.00081  Score=62.14  Aligned_cols=82  Identities=26%  Similarity=0.404  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHH-hhhcc-------cccc---------HH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFL-VAAKF-------VDDD---------TA  132 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~-lAsK~-------~dD~---------~~  132 (205)
                      -+.+++..+..+++++++++-+|.-++||+.....+  ...-.--+=++|++ +|+||       .+|.         .+
T Consensus       160 iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v--~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~  237 (391)
T KOG0653|consen  160 ILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKV--PLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSRE  237 (391)
T ss_pred             HHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcc--cHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchH
Confidence            467899999999999999999999999999986332  22223345567757 99999       3333         89


Q ss_pred             HHHHHHHHHHHhCCCceeeCH
Q 039330          133 EMNKLEMNFLFTLELKLHVTT  153 (205)
Q Consensus       133 ELN~LE~~FL~~Ldf~L~Vs~  153 (205)
                      ++-+||+..|..|+|++.+..
T Consensus       238 ~il~mE~~il~~L~f~l~~p~  258 (391)
T KOG0653|consen  238 EILRMEKYILNVLEFDLSVPT  258 (391)
T ss_pred             HHHHHHHHHHhccCeeecCCc
Confidence            999999999999999999864

>TIGR00569 ccl1 cyclin ccl1

Probab=97.09  E-value=0.0032  Score=56.62  Aligned_cols=91  Identities=13%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHcC--CChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-----------------HH
Q 039330           72 RQYIERVFKYSR--CSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-----------------TA  132 (205)
Q Consensus        72 ~~yl~rI~~~~~--~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-----------------~~  132 (205)
                      ..++.++....+  ++..+.-.|.+|++|+..+..+  ...+.+-+.+||+.+|+|+=+..                 .+
T Consensus        60 ~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv--~~~~p~~Ia~tclfLA~KvEE~~~si~~fv~~~~~~~~~~~~  137 (305)
T TIGR00569        60 EKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSV--MEYHPKIIMLTCVFLACKVEEFNVSIDQFVGNLKETPLKALE  137 (305)
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCch--hhcCHHHHHHHHHHHHHhccccCcCHHHHHhhccCCchhhHH
Confidence            345777777888  9999999999999999985443  35678899999999999986543                 38


Q ss_pred             HHHHHHHHHHHhCCCceeeCH--HHHHHHHHHHH
Q 039330          133 EMNKLEMNFLFTLELKLHVTT--EVFAKYCSQLD  164 (205)
Q Consensus       133 ELN~LE~~FL~~Ldf~L~Vs~--eef~~y~~~L~  164 (205)
                      ++-.+|..+|+.|+|+|.|.-  .-...|...++
T Consensus       138 ~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~  171 (305)
T TIGR00569       138 QVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIK  171 (305)
T ss_pred             HHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHH
Confidence            999999999999999999853  22334554444

University).

>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]

Probab=96.88  E-value=0.002  Score=59.71  Aligned_cols=94  Identities=19%  Similarity=0.289  Sum_probs=80.4

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------------
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------  130 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------  130 (205)
                      ||..-++++-.-++++..+.-+|.||..++.-+.  .++-.|-+-.--+|+++|+|+- |.                   
T Consensus       384 SlKREMr~l~~d~~id~~TVa~AyVYFEKliLkg--lisK~NRKlcAGAclLlaaKmn-D~Kks~vKslIek~Ee~fR~n  460 (497)
T KOG4164|consen  384 SLKREMRELGEDCGIDVVTVAMAYVYFEKLILKG--LISKQNRKLCAGACLLLAAKMN-DLKKSTVKSLIEKLEEQFRLN  460 (497)
T ss_pred             HHHHHHHHhhhccCccceeehhHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhccc
Confidence            6777888899889999999999999999998643  2466677777889999999998 54                   


Q ss_pred             HHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHHh
Q 039330          131 TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME  166 (205)
Q Consensus       131 ~~ELN~LE~~FL~~Ldf~L~Vs~eef~~y~~~L~~~  166 (205)
                      .+||-..|.-.|.+|+|.|+++..|..-.|..|+.+
T Consensus       461 rrdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~~e  496 (497)
T KOG4164|consen  461 RRDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQQE  496 (497)
T ss_pred             HHhhhhhhhhHHHhhhhhccCChhhcchHHHHHhhc
Confidence            678888999999999999999999998888888754

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]

Probab=96.54  E-value=0.012  Score=53.73  Aligned_cols=91  Identities=22%  Similarity=0.328  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhccccc-------------c---HHHH
Q 039330           71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD-------------D---TAEM  134 (205)
Q Consensus        71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD-------------~---~~EL  134 (205)
                      +-|++..+..-.++-.|+|-+|.=|+||+.... ..+.-.|..-+=+||+.+|+|+=+=             -   -.++
T Consensus       148 LlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~-~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddI  226 (408)
T KOG0655|consen  148 LLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQ-VEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDI  226 (408)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhhhhhHHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHH
Confidence            678999999999999999999999999999743 3344556666779999999996321             1   8899


Q ss_pred             HHHHHHHHHhCCCcee-eCHHHHHHHHHH
Q 039330          135 NKLEMNFLFTLELKLH-VTTEVFAKYCSQ  162 (205)
Q Consensus       135 N~LE~~FL~~Ldf~L~-Vs~eef~~y~~~  162 (205)
                      -.||.-.|++|+|+|. |+.-.+-+-|.+
T Consensus       227 ltmE~iilkal~W~l~PiTii~WL~vylQ  255 (408)
T KOG0655|consen  227 LTMELIILKALKWELSPITIISWLNVYLQ  255 (408)
T ss_pred             HHHHHHHHHHhcccccceehHHHHHHHHH
Confidence            9999999999999997 444333333333

>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=95.95  E-value=0.028  Score=50.41  Aligned_cols=78  Identities=19%  Similarity=0.342  Sum_probs=67.8

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccc---cc------------------H
Q 039330           73 QYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVD---DD------------------T  131 (205)
Q Consensus        73 ~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~d---D~------------------~  131 (205)
                      .++.++-.+-++...++=.|.+|.+|+.-+..  +...+.+-+..|++.+|.|+=|   |.                  .
T Consensus        50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~s--v~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~sr  127 (297)
T COG5333          50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNS--VEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSSR  127 (297)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcc--cccccHHHHHHhheeeeeecccccchhhHHHHHhhccccccccccH
Confidence            56888888889999999999999999976433  5788889999999999999877   22                  6


Q ss_pred             HHHHHHHHHHHHhCCCceeeC
Q 039330          132 AEMNKLEMNFLFTLELKLHVT  152 (205)
Q Consensus       132 ~ELN~LE~~FL~~Ldf~L~Vs  152 (205)
                      +++-.+|.+.|+.|+|+++|.
T Consensus       128 ~~Il~~E~~lLEaL~fd~~V~  148 (297)
T COG5333         128 ERILEYEFELLEALDFDLHVH  148 (297)
T ss_pred             HHHHHHHHHHHHHcccceEec
Confidence            789999999999999999985

>COG5024 Cyclin [Cell division and chromosome partitioning]

Probab=95.33  E-value=0.041  Score=51.88  Aligned_cols=84  Identities=19%  Similarity=0.281  Sum_probs=68.1

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHH-HHHHHHhhhcccccc----------------HH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHL-LITSFLVAAKFVDDD----------------TA  132 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL-~ltal~lAsK~~dD~----------------~~  132 (205)
                      .|-+|+..+....++.|+++-+|.-.+||+...+.+.+   +...| =++|+.+|+||=+=.                .+
T Consensus       215 ~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l---~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~  291 (440)
T COG5024         215 ILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSL---EKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRD  291 (440)
T ss_pred             HHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccH---HHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHH
Confidence            36789999999999999999999999999999776543   33444 478899999973322                88


Q ss_pred             HHHHHHHHHHHhCCCceeeC-HHHH
Q 039330          133 EMNKLEMNFLFTLELKLHVT-TEVF  156 (205)
Q Consensus       133 ELN~LE~~FL~~Ldf~L~Vs-~eef  156 (205)
                      ++-..|+..|..++|++-.. +.-|
T Consensus       292 ~i~~aE~~ml~~l~f~is~P~P~sF  316 (440)
T COG5024         292 DIIRAERYMLEVLDFNISWPSPMSF  316 (440)
T ss_pred             HHHHHHHHHhhhcccccCCCChHHH
Confidence            99999999999999998754 4444

>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]

Probab=93.78  E-value=0.26  Score=44.84  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------------
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------  130 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------  130 (205)
                      ....||..+-..-+++.-+.-.|.+|..|+.-...+.  ....+-+-.+|+.+|.|.=|-.                   
T Consensus        41 ~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~--~~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~~~~  118 (323)
T KOG0834|consen   41 EGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFK--KFDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNPKDL  118 (323)
T ss_pred             HHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccc--cCcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCcccc
Confidence            3567999999999999999999999999998765543  3333556778888999864422                   


Q ss_pred             ---------HHHHHHHHHHHHHhCCCceeeCH-HH-HHHHHHHHHHhhh
Q 039330          131 ---------TAEMNKLEMNFLFTLELKLHVTT-EV-FAKYCSQLDMEGA  168 (205)
Q Consensus       131 ---------~~ELN~LE~~FL~~Ldf~L~Vs~-ee-f~~y~~~L~~~~~  168 (205)
                               .+++-.+|+-.|+.|+|++.|.. -. ...|...+..+..
T Consensus       119 ~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~  167 (323)
T KOG0834|consen  119 ELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADEN  167 (323)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhh
Confidence                     77889999999999999999975 33 4566666665443

>KOG0835 consensus Cyclin L [General function prediction only]

Probab=92.58  E-value=0.83  Score=41.79  Aligned_cols=90  Identities=16%  Similarity=0.246  Sum_probs=68.5

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------------
Q 039330           73 QYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------------  130 (205)
Q Consensus        73 ~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------------  130 (205)
                      ++|..---..+++..|...++|.+.|++....+.  ..+..-+..+|+.+|||.=+.-                      
T Consensus        28 e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v--~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~~  105 (367)
T KOG0835|consen   28 ELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFV--RHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEAA  105 (367)
T ss_pred             HHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccc--cccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccCc
Confidence            4555555556789999999999999999854432  3456778999999999976543                      


Q ss_pred             ------------HHHHHHHHHHHHHhCCCceeeC--HHHHHHHHHHHH
Q 039330          131 ------------TAEMNKLEMNFLFTLELKLHVT--TEVFAKYCSQLD  164 (205)
Q Consensus       131 ------------~~ELN~LE~~FL~~Ldf~L~Vs--~eef~~y~~~L~  164 (205)
                                  ..+.-+.|++.|..|+|+.+|.  -..+..|...|+
T Consensus       106 ~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~  153 (367)
T KOG0835|consen  106 EHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQ  153 (367)
T ss_pred             chhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhc
Confidence                        3456788999999999999985  345667766665

>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]

Probab=88.96  E-value=0.81  Score=40.09  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330           71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------------  130 (205)
Q Consensus        71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------------  130 (205)
                      ...++..+..+.++-..++-.|.+|+.|+.-+.+  +...+..-+..||+-+|+|+=+--                    
T Consensus        44 ~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S--~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~~  121 (264)
T KOG0794|consen   44 MANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKS--LKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFSY  121 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhccc
Confidence            3467888888888888899999999999988655  356677788899999999975551                    


Q ss_pred             --------HHHHHHHHHHHHHhCCCceeeC
Q 039330          131 --------TAEMNKLEMNFLFTLELKLHVT  152 (205)
Q Consensus       131 --------~~ELN~LE~~FL~~Ldf~L~Vs  152 (205)
                              .+.+-.+|...|+.||+-|.|-
T Consensus       122 ~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVh  151 (264)
T KOG0794|consen  122 WPEKFPYERKDILEMEFYLLEALDCYLIVH  151 (264)
T ss_pred             chhhcCCCcCcchhhhhhHHhhhceeEEEe
Confidence                    4566778999999999999883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
2pmi_B	293	PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de	2e-30
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-06

>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Length = 293

 Score =  112 bits (281), Expect = 2e-30
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 16/166 (9%)

Query: 23  KSSSTPRVLSILSSVLERSIQKNE-SSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKY 81
              S   ++ ++S +L   I  NE S++K S  +  +T +H    P++SI  Y  R+ K+
Sbjct: 28  NKCSRTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKF 87

Query: 82  SRCSPSCFIVAYIYLDRFLQRING-CLTRLNVHHLLITSFLVAAKFVDD----------- 129
           S       + +  Y+D          L  L  H  L+T+  VA K + D           
Sbjct: 88  SSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV 147

Query: 130 ---DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEE 172
                 E+N LE +FL  +  ++            +   +    ++
Sbjct: 148 GGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKKFVIDK 193

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 10/39 (25%)

Query: 39 ER-SIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIE 76
          E+ +++K ++S K         ++    AP+L+I+  +E
Sbjct: 18 EKQALKKLQASLK---------LYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2pmi_B	293	PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de	100.0
1f5q_B	252	Gamma herpesvirus cyclin; herpesviral cyclin, cycl	98.43
3g33_B	306	CCND3 protein; Ser/Thr protein kinase, cell cycle,	98.31
2f2c_A	254	Cyclin homolog, V-cyclin; small molecule inhibitor	98.26
1g3n_C	257	V-cyclin; cyclin-dependent kinase, INK4 inhibitor,	98.26
2w96_A	271	G1/S-specific cyclin-D1; serine/threonine-protein	98.22
2b9r_A	269	Human cyclin B1; cell cycle; 2.90A {Homo sapiens}	98.22
1w98_B	283	Cyclin E, G1/S-specific cyclin E1; cell cycle, tra	98.21
2cch_B	260	Cyclin A2, cyclin-A; complex(transferase/cell divi	98.2
2i53_A	258	Cyclin K; cell cycle, transcription, cyclin BOX, C	97.84
2ivx_A	257	Cyclin-T2; transcription regulation, cell division	97.81
1zp2_A	235	RNA polymerase II holoenzyme cyclin-like subunit;	97.66
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	97.62
3rgf_B	285	Cyclin-C; protein kinase complex, transferase,tran	97.61
1jkw_A	323	Cyclin H; cell cycle, cell division, nuclear prote	97.39
1c9b_A	207	General transcription factor IIB; protein-DNA comp	96.32
1ais_B	200	TFB TFIIB, protein (transcription initiation facto	94.51

>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*

Probab=100.00  E-value=3.1e-34  Score=251.90  Aligned_cols=142  Identities=23%  Similarity=0.323  Sum_probs=127.0

Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhcCCcccc-ccccccccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q 039330           23 KSSSTPRVLSILSSVLERSIQKNESSSKAS-KKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQ  101 (205)
Q Consensus        23 ~~~~~p~ll~~ia~~Le~li~~nd~~~~~~-~~~~~~t~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~  101 (205)
                      ..-+..+++.+||.+|+++|+.||...... .....+++||+..+|+|+|++|+.||+++++|+++|+++|++||||+.+
T Consensus        28 ~~~~~~dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~  107 (293)
T 2pmi_B           28 NKCSRTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQT  107 (293)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            334556799999999999999999886432 2234688999999999999999999999999999999999999999998


Q ss_pred             -ccCccccccchHHHHHHHHHhhhcccccc--------------HHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHH
Q 039330          102 -RINGCLTRLNVHHLLITSFLVAAKFVDDD--------------TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLD  164 (205)
Q Consensus       102 -~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------~~ELN~LE~~FL~~Ldf~L~Vs~eef~~y~~~L~  164 (205)
                       .+++.+++.||||||++|+|+|+|||||.              ++|||.||++||++|||+|+|++++|.+|+.++.
T Consensus       108 ~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~E~~  185 (293)
T 2pmi_B          108 VYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQK  185 (293)
T ss_dssp             HCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTHHHHHHHHSC
T ss_pred             hCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHHHHHHHHHHh
Confidence             48899999999999999999999999998              9999999999999999999999999999987765

>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1

Probab=98.43  E-value=1.5e-06  Score=74.36  Aligned_cols=89  Identities=19%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+-+++..+....+++++++-+|..|+||+..+..  +......-+-+||+.+|+|+-+-.                .+|
T Consensus        51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~--v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~  128 (252)
T 1f5q_B           51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR--IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK  128 (252)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence            47789999999999999999999999999998644  345567788899999999986643                789


Q ss_pred             HHHHHHHHHHhCCCceee-CHHHHHHHH
Q 039330          134 MNKLEMNFLFTLELKLHV-TTEVFAKYC  160 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~V-s~eef~~y~  160 (205)
                      +-+||+..|..|+|+|.+ ++-.|-.++
T Consensus       129 i~~mE~~IL~~L~w~l~~pTp~~FL~~~  156 (252)
T 1f5q_B          129 LLTLEVKSLDTLSWVADRCLSTDLICYI  156 (252)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence            999999999999999984 667776544

>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.31  E-value=2.1e-06  Score=75.21  Aligned_cols=88  Identities=22%  Similarity=0.364  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+|+.++....+++++++-+|..|+||+..+..  +...+.+-+-+||+.+|+|+-+-.                .+|
T Consensus        73 ~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~--v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~  150 (306)
T 3g33_B           73 MLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQ  150 (306)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHH
T ss_pred             HHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHH
Confidence            47789999999999999999999999999998643  456778899999999999985543                789


Q ss_pred             HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330          134 MNKLEMNFLFTLELKLHV-TTEVFAKY  159 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~V-s~eef~~y  159 (205)
                      +-+||+..|+.|+|+|.+ ++..|-.+
T Consensus       151 i~~mE~~IL~~L~f~l~~~tp~~fl~~  177 (306)
T 3g33_B          151 LRDWEVLVLGKLKWDLAAVIAHDFLAF  177 (306)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCGGGGHHH
T ss_pred             HHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence            999999999999999985 44445433

>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A

Probab=98.26  E-value=3.3e-06  Score=71.55  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+++..+....+++++++-+|..|+||+..+..  +...+..-+-+||+.+|+|+-+..                .+|
T Consensus        54 ~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~  131 (254)
T 2f2c_A           54 ILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE  131 (254)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC--cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence            46789999999999999999999999999998643  456678889999999999996643                789


Q ss_pred             HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330          134 MNKLEMNFLFTLELKLHV-TTEVFAKY  159 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~V-s~eef~~y  159 (205)
                      +-+||+..|+.|+|++.+ ++..|-.+
T Consensus       132 i~~mE~~IL~~L~~~l~~~tp~~fl~~  158 (254)
T 2f2c_A          132 LINQEKDILEALKWDTEAVLATDFLIP  158 (254)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCGGGSHHH
T ss_pred             HHHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence            999999999999999984 45555443

>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1

Probab=98.26  E-value=5.7e-06  Score=70.22  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+++..+....+++++++-+|..|+||+..+..  +...+..-+-+||+.+|+|+-+-.                .+|
T Consensus        53 ~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~  130 (257)
T 1g3n_C           53 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE  130 (257)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence            46789999999999999999999999999998643  355667788899999999986642                789


Q ss_pred             HHHHHHHHHHhCCCcee-eCHHHHHHHH
Q 039330          134 MNKLEMNFLFTLELKLH-VTTEVFAKYC  160 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~-Vs~eef~~y~  160 (205)
                      +-+||+..|+.|+|++. +++..|-.++
T Consensus       131 i~~mE~~iL~~L~~~l~~~tp~~fl~~~  158 (257)
T 1g3n_C          131 LIDQEKELLEKLAWRTEAVLATDVTSFL  158 (257)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence            99999999999999998 4566665544

>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A

Probab=98.22  E-value=8.8e-06  Score=69.55  Aligned_cols=88  Identities=24%  Similarity=0.366  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+|+.++....+++++++-+|..|+||+..+..  +...+..-+-+||+.+|+|+-+-.                .+|
T Consensus        59 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~e  136 (271)
T 2w96_A           59 IVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP--VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEE  136 (271)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHH
T ss_pred             HHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCC--cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHH
Confidence            46789999999999999999999999999998644  355678889999999999987652                789


Q ss_pred             HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330          134 MNKLEMNFLFTLELKLHV-TTEVFAKY  159 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~V-s~eef~~y  159 (205)
                      +-+||+..|+.|+|++.+ ++..|-.+
T Consensus       137 I~~mE~~IL~~L~~~l~~~tp~~fl~~  163 (271)
T 2w96_A          137 LLQMELLLVNKLKWNLAAMTPHDFIEH  163 (271)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCccCCCCHHHHHHH
Confidence            999999999999999984 55655543

>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*

Probab=98.22  E-value=1.1e-05  Score=69.03  Aligned_cols=87  Identities=17%  Similarity=0.273  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+++.++....+++++++-.|..|+||+..+..  +...+..-+-+||+.+|+|+-+..                .+|
T Consensus        40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~e  117 (269)
T 2b9r_A           40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ  117 (269)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHH
Confidence            47789999999999999999999999999998644  456678899999999999986652                789


Q ss_pred             HHHHHHHHHHhCCCceee-CHHHHHH
Q 039330          134 MNKLEMNFLFTLELKLHV-TTEVFAK  158 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~V-s~eef~~  158 (205)
                      +-+||+..|+.|+|++.+ ++..|-.
T Consensus       118 I~~mE~~IL~~L~f~l~~~tp~~fl~  143 (269)
T 2b9r_A          118 IRQMEMKILRALNFGLGRPLPLHFLR  143 (269)
T ss_dssp             HHHHHHHHHHHTTSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCccCCCCHHHHHH
Confidence            999999999999999984 5555543

>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1

Probab=98.21  E-value=1.1e-05  Score=69.64  Aligned_cols=91  Identities=19%  Similarity=0.291  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc-cCccccccchHHHHHHHHHhhhcccccc----------------HH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQR-INGCLTRLNVHHLLITSFLVAAKFVDDD----------------TA  132 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~-~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~  132 (205)
                      .+.+++.++....+++++++-+|..|+||+..+ ..  +...+..-+-+||+.+|+|+-+..                .+
T Consensus        52 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~  129 (283)
T 1w98_B           52 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN--VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD  129 (283)
T ss_dssp             HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHH
Confidence            467899999999999999999999999999985 33  356778899999999999987652                78


Q ss_pred             HHHHHHHHHHHhCCCcee-eCHHHHHHHHHH
Q 039330          133 EMNKLEMNFLFTLELKLH-VTTEVFAKYCSQ  162 (205)
Q Consensus       133 ELN~LE~~FL~~Ldf~L~-Vs~eef~~y~~~  162 (205)
                      |+.+||+..|+.|+|+|. +++..|-.++..
T Consensus       130 ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~  160 (283)
T 1w98_B          130 EILTMELMIMKALKWRLSPLTIVSWLNVYMQ  160 (283)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCCCCCHHHHHHHHHH
Confidence            999999999999999998 466667655443

>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...

Probab=98.20  E-value=7.9e-06  Score=69.43  Aligned_cols=88  Identities=20%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+|+.++....+++++++-+|..|+||+..+..+  ...+.+-+-+||+.+|+|+-+..                .+|
T Consensus        41 ~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~  118 (260)
T 2cch_B           41 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV--LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ  118 (260)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC--CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence            467999999999999999999999999999986443  45667888999999999987663                789


Q ss_pred             HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330          134 MNKLEMNFLFTLELKLHV-TTEVFAKY  159 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~V-s~eef~~y  159 (205)
                      +-+||+..|+.|+|++.+ ++..|-.+
T Consensus       119 i~~mE~~iL~~L~~~l~~~tp~~fl~~  145 (260)
T 2cch_B          119 VLRMEHLVLKVLTFDLAAPTVNQFLTQ  145 (260)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence            999999999999999874 45555443

>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1

Probab=97.84  E-value=8.9e-05  Score=62.41  Aligned_cols=85  Identities=19%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330           71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------------  130 (205)
Q Consensus        71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------------  130 (205)
                      ..+++.++....+++++++-.|..|+||+..+..+  ...+.+-+-+||+.+|+|+-+..                    
T Consensus        44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~  121 (258)
T 2i53_A           44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF--KQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG  121 (258)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCh--hhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence            56889999999999999999999999999876443  45677888899999999986532                    


Q ss_pred             ------HHHHHHHHHHHHHhCCCceeeC-HHHHH
Q 039330          131 ------TAEMNKLEMNFLFTLELKLHVT-TEVFA  157 (205)
Q Consensus       131 ------~~ELN~LE~~FL~~Ldf~L~Vs-~eef~  157 (205)
                            .+++-.||+.+|+.|+|++.+. +..|-
T Consensus       122 ~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl  155 (258)
T 2i53_A          122 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL  155 (258)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHCCCceeccChHHHH
Confidence                  2588899999999999999864 55543

>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*

Probab=97.81  E-value=9.6e-05  Score=62.32  Aligned_cols=85  Identities=22%  Similarity=0.258  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330           71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------------  130 (205)
Q Consensus        71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------------  130 (205)
                      ..+++.++....+++++++-.|..|+||+..+..+  ...+.+-+-+||+.+|+|+-+..                    
T Consensus        34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~  111 (257)
T 2ivx_A           34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSF--TKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL  111 (257)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCCh--hhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence            56889999999999999999999999999986443  56778899999999999985522                    


Q ss_pred             -----------HHHHHHHHHHHHHhCCCceee-CHHHHH
Q 039330          131 -----------TAEMNKLEMNFLFTLELKLHV-TTEVFA  157 (205)
Q Consensus       131 -----------~~ELN~LE~~FL~~Ldf~L~V-s~eef~  157 (205)
                                 .+++-.||+..|+.|+|++.+ ++..|-
T Consensus       112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl  150 (257)
T 2ivx_A          112 LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV  150 (257)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence                       468999999999999999985 455554

>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}

Probab=97.66  E-value=0.00026  Score=59.05  Aligned_cols=86  Identities=14%  Similarity=0.211  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccc-cchHHHHHHHHHhhhcccccc------------------
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTR-LNVHHLLITSFLVAAKFVDDD------------------  130 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~-~n~hRL~ltal~lAsK~~dD~------------------  130 (205)
                      ...++|.++....+++.+++-.|..|++|+..+..+  .. .+..-+.+||+.+|+|+-+..                  
T Consensus        30 ~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~--~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~  107 (235)
T 1zp2_A           30 YQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNE--EKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV  107 (235)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCS--CCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence            456789999999999999999999999999986443  34 678899999999999985432                  


Q ss_pred             ---HHHHHHHHHHHHHhCCCceee-CHHHHH
Q 039330          131 ---TAEMNKLEMNFLFTLELKLHV-TTEVFA  157 (205)
Q Consensus       131 ---~~ELN~LE~~FL~~Ldf~L~V-s~eef~  157 (205)
                         .+++-++|+..|+.|+|++.+ ++..|-
T Consensus       108 ~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l  138 (235)
T 1zp2_A          108 KLSRSNISEIEFEIISVLDAFLIVHHPYTSL  138 (235)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHH
T ss_pred             hccHHHHHHHHHHHHHHCCCcEEecChHHHH
Confidence               468999999999999999986 355543

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=97.62  E-value=8.7e-05  Score=66.33  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330           71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------------  130 (205)
Q Consensus        71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------------  130 (205)
                      +.++|.++....+++.+++-.|.+|+||+..+..  +...+.+-+-+|||.+|+|+-+..                    
T Consensus        41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~s--v~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~  118 (358)
T 2pk2_A           41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQS--FTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL  118 (358)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence            5688999999999999999999999999998644  356778899999999999986532                    


Q ss_pred             -----------HHHHHHHHHHHHHhCCCceeeC-HHHH
Q 039330          131 -----------TAEMNKLEMNFLFTLELKLHVT-TEVF  156 (205)
Q Consensus       131 -----------~~ELN~LE~~FL~~Ldf~L~Vs-~eef  156 (205)
                                 .+++-.||+.+|+.|+|+|.+. +..|
T Consensus       119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~f  156 (358)
T 2pk2_A          119 PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTH  156 (358)
T ss_dssp             CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHH
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHH
Confidence                       2467789999999999999864 4444

>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=97.61  E-value=0.00031  Score=60.52  Aligned_cols=91  Identities=15%  Similarity=0.168  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330           71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------------  130 (205)
Q Consensus        71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------------  130 (205)
                      ..++|.++....+++.+++-.|.+|++|+..+..+  ...+.+-+.++|+.+|+|+-+-.                    
T Consensus        46 ~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~  123 (285)
T 3rgf_B           46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYSL--KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS  123 (285)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCT--TTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCc--hhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence            46889999999999999999999999999986544  46778899999999999974432                    


Q ss_pred             ----------HHHHHHHHHHHHHhCCCceeeC-HHHH-HHHHHHH
Q 039330          131 ----------TAEMNKLEMNFLFTLELKLHVT-TEVF-AKYCSQL  163 (205)
Q Consensus       131 ----------~~ELN~LE~~FL~~Ldf~L~Vs-~eef-~~y~~~L  163 (205)
                                .+++-++|+.+|+.|+|++.|. +..| ..|...+
T Consensus       124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l  168 (285)
T 3rgf_B          124 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM  168 (285)
T ss_dssp             TTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred             ccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence                      2688999999999999999764 4443 3444444

>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A

Probab=97.39  E-value=0.00087  Score=58.86  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=72.1

Q ss_pred             HHHHHHHHHcC--CChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330           73 QYIERVFKYSR--CSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------------  130 (205)
Q Consensus        73 ~yl~rI~~~~~--~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------------  130 (205)
                      ++|.++....+  ++.+++-.|.+|++|+..+..+  ...+.+-+.+||+.+|+|+=+-.                    
T Consensus        62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~  139 (323)
T 1jkw_A           62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSV--MEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA  139 (323)
T ss_dssp             HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCCh--hhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHH
Confidence            56888888889  9999999999999999986443  46778899999999999975432                    


Q ss_pred             HHHHHHHHHHHHHhCCCceeeC-HHHH-HHHHHHHH
Q 039330          131 TAEMNKLEMNFLFTLELKLHVT-TEVF-AKYCSQLD  164 (205)
Q Consensus       131 ~~ELN~LE~~FL~~Ldf~L~Vs-~eef-~~y~~~L~  164 (205)
                      .+++-.||+..|+.|+|+|.|. +..| ..|...+.
T Consensus       140 ~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~  175 (323)
T 1jkw_A          140 LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK  175 (323)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHH
Confidence            3789999999999999999864 4443 34555554

>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*

Probab=96.32  E-value=0.025  Score=45.81  Aligned_cols=90  Identities=11%  Similarity=0.108  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------HHHHHHHH
Q 039330           72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------TAEMNKLE  138 (205)
Q Consensus        72 ~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------~~ELN~LE  138 (205)
                      .++|.++....+++..+.=.|..|++|+..+..+  ...+..-+..+|+-+|.|+-+-.             .+|+.++|
T Consensus         9 ~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~--~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~~~   86 (207)
T 1c9b_A            9 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL--KGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCF   86 (207)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCS--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--CCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence            5688999999999999999999999999986443  46678889999999999985543             78999999


Q ss_pred             HHHHHhCCCceeeC-H-HHHHHHHHHH
Q 039330          139 MNFLFTLELKLHVT-T-EVFAKYCSQL  163 (205)
Q Consensus       139 ~~FL~~Ldf~L~Vs-~-eef~~y~~~L  163 (205)
                      +.+|+.|+|++.+. + ....+|+..|
T Consensus        87 ~~ll~~L~~~l~~~~p~~~l~r~~~~l  113 (207)
T 1c9b_A           87 KLILKALETSVDLITTGDFMSRFCSNL  113 (207)
T ss_dssp             HHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred             HHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence            99999999998653 2 3334444443

>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*

Probab=94.51  E-value=0.22  Score=39.78  Aligned_cols=91  Identities=9%  Similarity=0.053  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------HHHHHHH
Q 039330           71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------TAEMNKL  137 (205)
Q Consensus        71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------~~ELN~L  137 (205)
                      -.+++.++....+++..+.=.|..|.+|+..+..+  ...+..-+..+|+-+|.|..+..             .+|+.+.
T Consensus        12 a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~--~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~   89 (200)
T 1ais_B           12 ALSELDRITAQLKLPRHVEEEAARLYREAVRKGLI--RGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRS   89 (200)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTT--TTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc--CCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHH
Confidence            46789999999999999999999999999886432  45567888999999999986643             7899999


Q ss_pred             HHHHHHhCCCceee---CHHHH-HHHHHHH
Q 039330          138 EMNFLFTLELKLHV---TTEVF-AKYCSQL  163 (205)
Q Consensus       138 E~~FL~~Ldf~L~V---s~eef-~~y~~~L  163 (205)
                      |+.+++.|+|++.+   ++..| .+|+..|
T Consensus        90 ~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L  119 (200)
T 1ais_B           90 YRFIARNLNLTPKKLFVKPTDYVNKFADEL  119 (200)
T ss_dssp             HHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred             HHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence            99999999999774   44444 4555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1w98b2	140	G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax	98.7
d2cchb1	128	Cyclin A {Cow (Bos taurus) [TaxId: 9913]}	98.69
d1bu2a1	127	Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}	98.61
d2i53a1	144	Cyclin K {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1g3nc1	132	Viral cyclin {Kaposi's sarcoma-associated herpesvi	98.57
d1f5qb1	141	Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]	98.54
d2ivxa1	143	Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1jkwa1	151	Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606	98.31

>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.5e-08  Score=75.33  Aligned_cols=79  Identities=19%  Similarity=0.326  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh-ccCccccccchHHHHHHHHHhhhcccccc----------------HH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQ-RINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TA  132 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~-~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~  132 (205)
                      .+-+++.++....+++++++-+|.-|+||+.. ++.  +...+.+-+-++|+.+|+|+-+..                .+
T Consensus        45 ~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~--v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~  122 (140)
T d1w98b2          45 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN--VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD  122 (140)
T ss_dssp             HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccc--ccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHH
Confidence            57889999999999999999999999999986 333  345678889999999999997754                78


Q ss_pred             HHHHHHHHHHHhCCCcee
Q 039330          133 EMNKLEMNFLFTLELKLH  150 (205)
Q Consensus       133 ELN~LE~~FL~~Ldf~L~  150 (205)
                      |+.+||+..|..|+|+|.
T Consensus       123 ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2         123 EILTMELMIMKALKWRLS  140 (140)
T ss_dssp             HHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHCCCcCC
Confidence            999999999999999984

>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=3.1e-08  Score=74.39  Aligned_cols=79  Identities=20%  Similarity=0.261  Sum_probs=70.5

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+-+++.++.+..+++++++-+|..|+||+.....+  .+.+.+-+-++|+.+|+|+-+..                .+|
T Consensus        33 ~li~W~~~v~~~~~l~~~t~~lAv~llDr~l~~~~i--~~~~~qLi~~~cl~iAsK~ee~~~~~l~~l~~~~~~~~t~~~  110 (128)
T d2cchb1          33 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV--LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ  110 (128)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcccCC--chHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHcCCCCHHH
Confidence            477999999999999999999999999999986544  46678889999999999997765                889


Q ss_pred             HHHHHHHHHHhCCCcee
Q 039330          134 MNKLEMNFLFTLELKLH  150 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L~  150 (205)
                      +.+||+..|..|+|+|.
T Consensus       111 i~~mE~~IL~~L~~~l~  127 (128)
T d2cchb1         111 VLRMEHLVLKVLTFDLA  127 (128)
T ss_dssp             HHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHCCCeec
Confidence            99999999999999974

>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

Probab=98.61  E-value=9.2e-08  Score=72.05  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+++.++..+.+++++++-+|..|+||+.....  +...+.+-+-+||+.+|+|+-+-.                .+|
T Consensus        33 ~lidWl~~v~~~~~l~~eTl~lAv~llDryl~~~~--i~~~~lqLi~~tcL~IAsK~ee~~~~~l~~l~~~~~~~~t~~e  110 (127)
T d1bu2a1          33 ILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE  110 (127)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHSSSSCCCHHHHHHTTTTSSCHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHccccc--ccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcCCCCHHH
Confidence            46799999999999999999999999999998543  467788999999999999987653                899


Q ss_pred             HHHHHHHHHHhCCCce
Q 039330          134 MNKLEMNFLFTLELKL  149 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L  149 (205)
                      +-+||+..|..|+||+
T Consensus       111 i~~mE~~IL~~L~~dl  126 (127)
T d1bu2a1         111 LINQEKDILEALKWDT  126 (127)
T ss_dssp             HHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999999997

>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-07  Score=72.09  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------------
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------  130 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------  130 (205)
                      .+.+|+..+....+++.+++..|.+|+||+..+..  +...+.+-+-+||+.+|+|+-+..                   
T Consensus        39 ~~~~~i~~~~~~l~l~~~t~~~A~~~~dRf~~~~~--~~~~~~~lva~acl~LA~K~eE~~~~l~~vi~~~~~~~~~~~~  116 (144)
T d2i53a1          39 EGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHS--FKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQF  116 (144)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCc--ccchhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhhhh
Confidence            46689999999999999999999999999987543  356778889999999999987752                   


Q ss_pred             -------HHHHHHHHHHHHHhCCCceee
Q 039330          131 -------TAEMNKLEMNFLFTLELKLHV  151 (205)
Q Consensus       131 -------~~ELN~LE~~FL~~Ldf~L~V  151 (205)
                             .+++-.||+..|+.|+|+|.|
T Consensus       117 ~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  144 (144)
T d2i53a1         117 GQFGDDPKEEVMVLERILLQTIKFDLQV  144 (144)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             hhhchhhHHHHHHHHHHHHHHCCCeeeC
Confidence                   368899999999999999986

>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=98.57  E-value=1e-07  Score=72.06  Aligned_cols=78  Identities=19%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+++.++....+++++++-+|..|+||+.....  +.....+-+-+||+.+|+|+-+..                .+|
T Consensus        38 ~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~--v~~~~lqLia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t~~e  115 (132)
T d1g3nc1          38 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE  115 (132)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCccc--CcHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCCHHH
Confidence            57899999999999999999999999999997543  456668889999999999985543                899


Q ss_pred             HHHHHHHHHHhCCCce
Q 039330          134 MNKLEMNFLFTLELKL  149 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L  149 (205)
                      +-+||...|..|+|+|
T Consensus       116 i~~mE~~IL~~L~w~l  131 (132)
T d1g3nc1         116 LIDQEKELLEKLAWRT  131 (132)
T ss_dssp             HHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHcCCcC
Confidence            9999999999999997

>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Murine herpesvirus 68 [TaxId: 33708]

Probab=98.54  E-value=1.7e-07  Score=71.81  Aligned_cols=78  Identities=21%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE  133 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E  133 (205)
                      .+.+++.++..+.+++++++-+|..|+||+.....  +...+.+-+-+||+.+|+|+-+..                .+|
T Consensus        46 ~lvdWm~~v~~~~~l~~etl~lAv~llDrfls~~~--i~~~~lqL~a~tcL~IAsK~ee~~~~~~~~l~~~~~~~yt~~e  123 (141)
T d1f5qb1          46 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR--IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK  123 (141)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHhcCCCCHHH
Confidence            68899999999999999999999999999997543  456678899999999999997764                899


Q ss_pred             HHHHHHHHHHhCCCce
Q 039330          134 MNKLEMNFLFTLELKL  149 (205)
Q Consensus       134 LN~LE~~FL~~Ldf~L  149 (205)
                      +..||...|..|+|++
T Consensus       124 i~~mE~~IL~~L~w~~  139 (141)
T d1f5qb1         124 LLTLEVKSLDTLSWVA  139 (141)
T ss_dssp             HHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHCCccC
Confidence            9999999999999986

>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.5e-07  Score=69.99  Aligned_cols=80  Identities=24%  Similarity=0.323  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------------
Q 039330           70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------  130 (205)
Q Consensus        70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------  130 (205)
                      ...+|+..+..+.+++.+++-.|.+|++|+..+..  +...+++-+.+||+.+|+|+-+..                   
T Consensus        33 ~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s--~~~~~~~~va~acl~LA~K~eE~~~~~~~ii~~~~~~~~~~~~  110 (143)
T d2ivxa1          33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHS--FTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEP  110 (143)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--ccccCHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccch
Confidence            34578999999999999999999999999987543  356789999999999999997742                   


Q ss_pred             ------------HHHHHHHHHHHHHhCCCceee
Q 039330          131 ------------TAEMNKLEMNFLFTLELKLHV  151 (205)
Q Consensus       131 ------------~~ELN~LE~~FL~~Ldf~L~V  151 (205)
                                  .+++..+|+..|+.|+|||.|
T Consensus       111 ~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1         111 LLDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             hhhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence                        568999999999999999986

>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin H (mcs2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.9e-06  Score=65.91  Aligned_cols=77  Identities=16%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcC--CChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330           73 QYIERVFKYSR--CSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------------  130 (205)
Q Consensus        73 ~yl~rI~~~~~--~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------------  130 (205)
                      +++.++....+  ++.+++-.|.+|++|+..+..  +...+.+-+.+||+.+|+|+-+-.                    
T Consensus        52 ~~l~~~~~~~k~~l~~~~~~tA~~~~~RF~~~~s--~~~~~~~li~~acl~LA~K~ee~~~~~~~~~~~~~~~~~~~~~~  129 (151)
T d1jkwa1          52 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNS--VMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA  129 (151)
T ss_dssp             HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSC--TTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHhhcCc--cccccHHHHHHHHHHHHHHHcccCCCHHHHHHHHHhhccccccc
Confidence            44666666554  789999999999999998644  357788899999999999985432                    


Q ss_pred             HHHHHHHHHHHHHhCCCceee
Q 039330          131 TAEMNKLEMNFLFTLELKLHV  151 (205)
Q Consensus       131 ~~ELN~LE~~FL~~Ldf~L~V  151 (205)
                      .+++-.+|...|+.|+|+|.|
T Consensus       130 ~~~i~~~E~~iL~~L~f~L~V  150 (151)
T d1jkwa1         130 LEQILEYELLLIQQLNFHLIV  150 (151)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHHHHHHHcCCeeee
Confidence            678999999999999999987