Citrus Sinensis ID: 039337

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340----
MFQKECRSLRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYYHEERSSRQSEQEKARKEKELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDSAPSIRSVAAMVPMRSPANGGSTASAGSGWGGSTNEGGWNRDRSSTPGSRTGRNDYRNGGGRDGHPSGLPRPYGGRGRGRGSNNSNRGNSSNSERQDSSYDTPKWDSANKSGDDSWGNFPGAKAQNPAGREAFPGGWGSSGGGGSSGWGGASDGDNGGWGHSSGGADKDSGWGGGGSKRSSDGGW
ccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHcccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccEEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccEEEEEEEEEccccEEEEcccccEEEEEcccccccccccccccccccccEEEEEEEEEEccccEEEEEccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccEEEcccccccccEEEEEEEEccEEEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccEEEEEEEccccccEEEEEEEcccEEEcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHcccHHHHHHHHcccccEccccHHHHHHccccccccccHHHHHHHcccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccEEEEEEcccccccccccccHHHHHHHHcccHHccccHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccEEEEEEcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHccccccccEcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHcccccEEEEEEEEEcccccEEEEccccccEEEHHHHcHHccccccHHEEccccEEEEEEEEEEcccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHccccccEEEEEccccccEEEEEEEEccccEEEEEEHHcccccccHHHHHHHccEEEEccccHccHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEEccccccEEEEEEccccEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MFQKECRSLRkalagpptdgesivdESTWIYNQLlsgtlplfgqrgagspkeghdlsisrDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEqnevnndnnddfertptlkWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAaeterevddvdlkfnlhfppgevgvdegqykrpkrstkysscskAGLWEVASkfgysseqLGLQLSLEKMgdeledpketpeEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFmdnavvstcptpdgdsaidSFHQFAGvkwlrekplrkFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCkehylsdgvsksAQLWNDQRELILKDAldnfllpsMVKEARSLMSGRAKSWLLMEYGKALWNkvsvgpyqrkdnditpdeeaaprvlaccwgpgkpetTFVMLDSSGEVVDVLFTGCLTLrsqnvrdqqskkNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEehprdvghemDELSivygdeslprlyensrissdqlpgqkgnvKRAVALGRYLQNPLAMVATLcgpgreilswklcplenfltpdekyGMIEQVMVDVTNQVGLDINLAIHRewqfaplqfisglgprKAASLQRSLVRAGaiftrkdfvtahglgkKVFVNAVGFLrvrrsgqaasssqfidllddtrihpesYGLAQELAKEVYNrdiegdlnddEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWrnqykepsqdeefYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGmlmkedysddwrdselsdklhegdiLTCKIKSIQKNRYQVFLVCRESemrnnryqhcqnldpyyheerssRQSEQEKARKEKELAKKHFKerlivhpcfqnvtADEAMKLLsakepgesiirpssrgpsyltlTLKVydgvyahkdiieggkdhkdiKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEkaefptrivygfgishehpgTFILTYIrstnphheyiglypkgFKFRKRMFEDIDRLVAYFQRhiddpqgdsapsiRSVAAmvpmrspanggstasagsgwggstneggwnrdrsstpgsrtgrndyrngggrdghpsglprpyggrgrgrgsnnsnrgnssnserqdssydtpkwdsanksgddswgnfpgakaqnpagreafpggwgssggggssgwggasdgdnggwghssggadkdsgwggggskrssdggw
mfqkecrslrkalagpptdgesIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQnevnndnnddfertptlKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNlhfppgevgvdegqykrpkrstkysscskAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTlrsqnvrdqqskKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENsrissdqlpgqkgNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKdfvtahglgkKVFVNAVGFLRVrrsgqaasssqfidllddTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEhvrdrpdllktylldrhikekkrenkretlYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATvrrvqgqraiCVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTckiksiqknrYQVFLVCRESEMRNNRYQHCQNLDPYYHEERSSRQSEQEKARKEKELAkkhfkerlivhpcfqnVTADEAMKLLSAKepgesiirpssrgpsyLTLTLKVYDGVYAHKDiieggkdhkdikSLVGIgktlkigedTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRhiddpqgdsAPSIRSVAAMVPMRSPANggstasagsgwggstneggwnrdrsstpgsrtgrndyrngggrdghpsglprpyggrgrgrgsnnsnrgnssnserqdssydtpKWDSANKSGDDSWGNFPGAKAQNPAGREAFPGGWGSSGGGGSSGWGGASDGDNGGWGHSSggadkdsgwggggskrssdggw
MFQKECRSLRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVnndnnddFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYsseqlglqlsleKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYYHeerssrqseqekarkekelakkHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDSAPSIRSVAAMVPMRSPANggstasagsgwggstneggwnRDRSSTPGSrtgrndyrngggrdgHPSGLPRPYggrgrgrgsnnsnrgnssnsERQDSSYDTPKWDSANKSGDDSWGNFPGAKAQNPAGREAFPggwgssggggssgwggasdgdnggwghssggadkdsgwggggskrssdggw
**********************IVDESTWIYNQLLSGTLPLFGQ************SISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLE***********FERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFD*****************VDLKFNLHFP************************KAGLWEVASKFGY*******************************FKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQR**********AAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLR****************LLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDE**********************VKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQ****SQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDL*****ALEMAIEHVRDRPDLLKTYLLDRHIK******KRETLYLIRRELIHGFQDWRNQYK******EFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLD***************************FKERLIVHPCFQNVTADEA*********************SYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHI***********************************************************************************************************************************************************************************************
*FQKECRSLRKAL***PTDGESIVDESTWIYNQLLSGTL******************ISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYD***LALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFP******************KYSSCSKAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTP*****IDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLR*************QERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDED**********DRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLV**************************************************IVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQR*************************************************************************************************************************************************************************************************
MFQKECRSLRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQR*********DLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSL********VDDVDLKFNLHFPPGEVGVD****************SKAGLWEVASKFGYSSEQLGLQLSLEKMG************MASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQN*********DQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYY******************ELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDSAPSIRSVAAMVPMRS**************GGSTNEG*************TGRNDYRNGGGRDGHPSGLPRPYGG**********************************KSGDDSWGNFPGAKAQNPAGREAFPGGWGSSGGGGSSGWGGASDGDNGGWGHSSGGADKD****************
*FQKECRSLRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQ****NDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQ**RPKRSTKYSSCSKAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM***********DPYYHEERSSRQSEQEKARKEKELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDP********************************************************************************************************************************************************************************************
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MFQKECRSLRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYYHEERSSRQSEQEKARKEKELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDSAPSIRSVAAMVPMRSPANGGSTASAGSGWGGSTNEGGWNRDRSSTPGSRTGRNDYRNGGGRDGHPSGLPRPYGGRGRGRGSNNSNRGNSSNSERQDSSYDTPKWDSANKSGDDSWGNFPGAKAQNPAGREAFPGGWGSSGGGGSSGWGGASDGDNGGWGHSSGGADKDSGWGGGGSKRSSDGGW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1344 2.2.26 [Sep-21-2011]
Q7KZ851726 Transcription elongation yes no 0.821 0.639 0.285 1e-133
Q623831726 Transcription elongation yes no 0.821 0.639 0.283 1e-132
Q8UVK21726 Transcription elongation yes no 0.861 0.670 0.279 1e-127
Q9W420 1831 Transcription elongation yes no 0.835 0.613 0.268 1e-119
Q931481521 Suppressor of Ty 6 homolo N/A no 0.772 0.682 0.257 1e-101
P347031521 Suppressor of Ty 6 homolo yes no 0.759 0.671 0.264 1e-100
Q099151365 Transcription elongation yes no 0.731 0.720 0.278 3e-95
Q4PI891723 Transcription elongation N/A no 0.743 0.579 0.271 1e-92
Q8NIV61402 Transcription elongation N/A no 0.799 0.766 0.252 1e-92
Q2U5611422 Transcription elongation yes no 0.793 0.750 0.253 5e-82
>sp|Q7KZ85|SPT6H_HUMAN Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2 Back     alignment and function desciption
 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 364/1275 (28%), Positives = 600/1275 (47%), Gaps = 171/1275 (13%)

Query: 29   WIY-NQLLSGTLPL-----FGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAM 82
            WIY N   + T+ L     +  RG  +         +   I   L  +  Q  ++PFIA 
Sbjct: 319  WIYRNAFATPTISLQESCDYLDRGQPASSFSRKGPSTIQKIKEALGFMRNQHFEVPFIAF 378

Query: 83   YRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQS 142
            YRKE     L       +N+                 LW +   D+KW  L+ RK  L  
Sbjct: 379  YRKEYVEPEL------HIND-----------------LWRVWQWDEKWTQLRIRKENLTR 415

Query: 143  YYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETER--------EVDDVDLKFNLH 194
             ++K    +    Y++     ++ L D I ++L+  + ER        E+ DV   F L+
Sbjct: 416  LFEKMQAYQ----YEQISADPDKPLADGI-RALDTTDMERLKDVQSMDELKDVYNHFLLY 470

Query: 195  F----PPGEVGVDEG----------------------------QYKRPKRSTKYSSCSKA 222
            +    P  +                                  + K+  R   Y+ C  A
Sbjct: 471  YGRDIPKMQNAAKASRKKLKRVREEGDEEGEGDEAEDEEQRGPELKQASRRDMYTICQSA 530

Query: 223  GLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARH 282
            GL  +A KFG + EQ G  L       E E     P E+A ++ C+ F + +AVL+GAR+
Sbjct: 531  GLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPTPEAVLEGARY 590

Query: 283  MAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFED 342
            M A++I+ EP VR+ +R  F + A ++  PT  G   +D  H     K+L+ KP+++  D
Sbjct: 591  MVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRD 650

Query: 343  AQWLLIQKAEEEKLLQVTIKLPEDSL------NKLFSDCKEHYLSDGVSKSAQLWNDQRE 396
             Q+L I  AE+E LL   I +    +         F + K+ Y  D  S   Q WN QR 
Sbjct: 651  DQFLKICLAEDEGLLTTDISIDLKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRT 710

Query: 397  LILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEE 456
            + ++ AL  FL   M KE ++ +   AK +++    + L+N + V PY R D  +  D++
Sbjct: 711  MAIERALQQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPY-RPDQQVEEDDD 769

Query: 457  -------AAPRVLACCWGPGKPETTF-VMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKN 508
                      RVL   +   +    F  +++  GEV D L     T R    R+++ +K 
Sbjct: 770  FMDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKK 829

Query: 509  DQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIV 566
             Q  E L KF+++ +PHVV +   N     L +D+  I+      H  D G ++  + + 
Sbjct: 830  AQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIV------HELDQGQQLSSIGVE 883

Query: 567  YGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLC 626
              D  L  LY NS+ S  +       +++AV+L R +Q+PL   A +C    +IL  K  
Sbjct: 884  LVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFH 943

Query: 627  PLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRS 686
            PL+  +  +E    +    ++  N+VG+D+N AI   +  A +Q++ GLGPRK   L + 
Sbjct: 944  PLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKI 1003

Query: 687  LVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESY 745
            L +    + +R   VT   +G KVF+N  GFL++  +    S+  +I++LD +R+HPE+Y
Sbjct: 1004 LKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETY 1063

Query: 746  GLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRE---NK 802
              A+++A +     +E D + ++     A+E + + P+ LK   LD   +E +R+   +K
Sbjct: 1064 EWARKMAVDA----LEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDK 1119

Query: 803  RETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATV-----RRV 857
              TLY IR EL   ++D R  Y+ P+ +E F M++ ET +T   G+++   V     RR 
Sbjct: 1120 HITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRP 1179

Query: 858  QGQ---RAICVLESGL--AGMLMKEDY---SDDWRDSE---------------------- 887
            QG+   +AI   E+GL       ++++   S+ W   +                      
Sbjct: 1180 QGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGF 1239

Query: 888  -----LSDKLHE--------GDILTCKIKSIQKNRYQVFLVCRESEM--RNNRYQHCQNL 932
                 LSDK+ +        G  + C+I  I   ++   L CR S++  RNN ++  +  
Sbjct: 1240 IPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPK-- 1297

Query: 933  DPYYHEERSSRQSEQEKARKEKELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESI 992
            D YY  +  +   +QE+  K K+    + K R+I HP F N+   +A K++   + G+ I
Sbjct: 1298 DTYYDFDAEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNINFKQAEKMMETMDQGDVI 1356

Query: 993  IRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEV 1052
            IRPSS+G ++LT+T KV DG+Y H D+ E GK++        +G TL I  + FEDLDE+
Sbjct: 1357 IRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA-----FSLGATLWINSEEFEDLDEI 1411

Query: 1053 VDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGT 1109
            V RY+ P+ S  + +L+++ ++    G + +++ELL   K E PT I Y      E PG 
Sbjct: 1412 VARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPGK 1471

Query: 1110 FILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDSAPSIRSVAA 1169
            F+L Y     P  EY+ + P+GF++R ++F  ++ L  +F+ H  DP     PS  S   
Sbjct: 1472 FLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSRT- 1530

Query: 1170 MVPMRSPANGGSTAS 1184
                R+PA+  +T +
Sbjct: 1531 ----RTPASINATPA 1541
Acts to stimulate transcriptional elongation by RNA polymerase II.
Homo sapiens (taxid: 9606)
>sp|Q62383|SPT6H_MOUSE Transcription elongation factor SPT6 OS=Mus musculus GN=Supt6h PE=1 SV=2 Back     alignment and function description
>sp|Q8UVK2|SPT6H_DANRE Transcription elongation factor SPT6 OS=Danio rerio GN=supt6h PE=1 SV=1 Back     alignment and function description
>sp|Q9W420|SPT6H_DROME Transcription elongation factor SPT6 OS=Drosophila melanogaster GN=Spt6 PE=1 SV=1 Back     alignment and function description
>sp|Q93148|SPT6H_CAEBR Suppressor of Ty 6 homolog OS=Caenorhabditis briggsae GN=emb-5 PE=2 SV=2 Back     alignment and function description
>sp|P34703|SPT6H_CAEEL Suppressor of Ty 6 homolog OS=Caenorhabditis elegans GN=emb-5 PE=1 SV=1 Back     alignment and function description
>sp|Q09915|SPT6_SCHPO Transcription elongation factor spt6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt6 PE=1 SV=2 Back     alignment and function description
>sp|Q4PI89|SPT6_USTMA Transcription elongation factor SPT6 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT6 PE=3 SV=1 Back     alignment and function description
>sp|Q8NIV6|SPT6_NEUCR Transcription elongation factor spt-6 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spt-6 PE=3 SV=1 Back     alignment and function description
>sp|Q2U561|SPT6_ASPOR Transcription elongation factor spt6 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1344
449470328 1631 PREDICTED: transcription elongation fact 0.945 0.779 0.789 0.0
359481576 1660 PREDICTED: transcription elongation fact 0.952 0.771 0.786 0.0
297741709 1646 unnamed protein product [Vitis vinifera] 0.941 0.768 0.782 0.0
224086751 1648 global transcription factor group [Popul 0.973 0.793 0.771 0.0
255567133 1650 suppressor of ty, putative [Ricinus comm 0.953 0.776 0.782 0.0
356570403 1617 PREDICTED: transcription elongation fact 0.980 0.815 0.734 0.0
356504629 1663 PREDICTED: transcription elongation fact 0.947 0.765 0.749 0.0
357509195 1753 LCR/BET1 [Medicago truncatula] gi|355499 0.977 0.749 0.717 0.0
2241375981216 global transcription factor group [Popul 0.839 0.927 0.801 0.0
145326656 1642 transcription elongation factor SPT6 [Ar 0.917 0.750 0.726 0.0
>gi|449470328|ref|XP_004152869.1| PREDICTED: transcription elongation factor SPT6-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 2071 bits (5366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1023/1296 (78%), Positives = 1135/1296 (87%), Gaps = 25/1296 (1%)

Query: 11   KALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLL 70
            ++   PPTD  S+ DE++WI+  + +G   L       S   G DLS+++DDI+R+LDL+
Sbjct: 280  ESTGSPPTDDASLDDEASWIHGHIANGVSSL------SSNASGQDLSVTKDDILRYLDLV 333

Query: 71   HLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKW 130
            H+QKLDIPFI+MYRKEE LSLLKD E      D+ D  ++ PTL+WHK+LWAI DLDKKW
Sbjct: 334  HVQKLDIPFISMYRKEEILSLLKDTEHEA--GDDQDKNDKAPTLRWHKLLWAIQDLDKKW 391

Query: 131  LLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLK 190
            LLLQKRK ALQSYYK RY EE R     TR  LN+QLFDS+++SLEAAE+EREVDDVD K
Sbjct: 392  LLLQKRKKALQSYYKNRYLEEIRTAEHVTRTTLNRQLFDSVNRSLEAAESEREVDDVDSK 451

Query: 191  FNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGLQLSLEKM-GD 249
            FNLHFPPGEVGVDEGQ+KRPKR + YS CSKAGLWEVA KFGYSSEQ GLQLSLEKM  D
Sbjct: 452  FNLHFPPGEVGVDEGQFKRPKRKSLYSICSKAGLWEVAGKFGYSSEQFGLQLSLEKMRND 511

Query: 250  ELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVS 309
            ELEDPKETPEEMASNF CAMF S QAVL+GARHMAA+EISCEPCVRK+VRS FMD AV+S
Sbjct: 512  ELEDPKETPEEMASNFTCAMFESPQAVLKGARHMAAIEISCEPCVRKHVRSYFMDYAVIS 571

Query: 310  TCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN 369
            T PT DG+ AIDSFHQF+ VKWLREKPL +FEDAQWLLIQKAEEEKLL VT+KLPE  LN
Sbjct: 572  TSPTADGNVAIDSFHQFSVVKWLREKPLNRFEDAQWLLIQKAEEEKLLNVTLKLPEKHLN 631

Query: 370  KLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLM 429
            KL SD  E+YLSDGVSKSAQLWN+QR+LIL+DAL  FLLPSM KEARSLM+ +AK WLLM
Sbjct: 632  KLISDFNEYYLSDGVSKSAQLWNEQRKLILQDALSGFLLPSMEKEARSLMTSKAKKWLLM 691

Query: 430  EYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLF 489
            EYGK LW+KVS+GPYQ K+NDI+ DEEAAPRV+ACCWGPGKP TTFVMLDSSGEV+DVL+
Sbjct: 692  EYGKNLWSKVSIGPYQHKENDISSDEEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLY 751

Query: 490  TGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMV 549
            TG LTLRSQNV DQQ KKNDQER+LKFM DHQPHVVVLGAVNLSCT LKDDIYEIIFKMV
Sbjct: 752  TGSLTLRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMV 811

Query: 550  EEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAM 609
            EE+PRDVGHEMD LSIVYGDESLPRLYENSRISSDQL GQ G VKRAVALGRYLQNPLAM
Sbjct: 812  EENPRDVGHEMDGLSIVYGDESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAM 871

Query: 610  VATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPL 669
            VATLCGPGREILSWKL PLENFLTPDEKYGM+EQVMVDVTNQVGLD NLAI  EW F+PL
Sbjct: 872  VATLCGPGREILSWKLNPLENFLTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPL 931

Query: 670  QFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSS 729
            QFI+GLGPRKAASLQRSLVRAG+IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSG AASSS
Sbjct: 932  QFIAGLGPRKAASLQRSLVRAGSIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSS 991

Query: 730  QFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYL 789
            QFIDLLDDTRIHPESY LAQELAK+V++ D++GD NDDEDA EMAIEHVRDRP LL+T  
Sbjct: 992  QFIDLLDDTRIHPESYALAQELAKDVFDEDVKGDANDDEDA-EMAIEHVRDRPHLLRTLD 1050

Query: 790  LDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRV 849
            +D + K KKRE+K ET   I+REL+ GFQDWR QY+EPSQDEEFYMISGETEDTLAEGR+
Sbjct: 1051 VDEYAKSKKREDKIETFLDIKRELMQGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRI 1110

Query: 850  VQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRD-SELSDKLHEGDILTCKIKSIQKN 908
            VQATVR+V GQ+AIC LESGL GMLMKEDY+DD RD S+LSD+L EGDI+TCKIKSIQKN
Sbjct: 1111 VQATVRKVLGQKAICGLESGLTGMLMKEDYADDSRDISDLSDRLREGDIVTCKIKSIQKN 1170

Query: 909  RYQVFLVCRESEMRNNRYQHCQNLDPYYHEERSSRQSEQEKARKEKELAKKHFKERLIVH 968
            RYQVFLVC+ESEMR+NR+Q  QNLDPYYHE+RSS QSEQEK+RKEKELAKKHFK R+IVH
Sbjct: 1171 RYQVFLVCKESEMRSNRHQITQNLDPYYHEDRSSLQSEQEKSRKEKELAKKHFKPRMIVH 1230

Query: 969  PCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKD 1028
            P FQN+TADEAM+LLS K+PGESI+RPSSRGPS+LTLTLK+YDGVYAHKDI+EGGK+HKD
Sbjct: 1231 PRFQNITADEAMELLSDKDPGESIVRPSSRGPSFLTLTLKIYDGVYAHKDIVEGGKEHKD 1290

Query: 1029 IKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIE 1088
            I SL+ IGKTLKIGEDTFEDLDEV+DRY+DPLV+HLKAMLSYRKFR+G+KAEVDEL++IE
Sbjct: 1291 ITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLSYRKFRRGTKAEVDELMKIE 1350

Query: 1089 KAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAY 1148
            K+E+P RI+YGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAY
Sbjct: 1351 KSEYPMRIIYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAY 1410

Query: 1149 FQRHIDDPQGDSAPSIRSVAAMVPMRSPANGGSTASAGSG-WGGSTNEGGW-----NRDR 1202
            FQRHIDDPQ DSAPSIRSVAAMVPMRSPA GGS+A++    WGGS++EGGW     +RDR
Sbjct: 1411 FQRHIDDPQHDSAPSIRSVAAMVPMRSPATGGSSAASAGSPWGGSSHEGGWRSQSFDRDR 1470

Query: 1203 SSTPGSRTG-----RNDYRNGGGRDGHPSGLPRPYGGRGRGRGSNNSNRGNSSNSERQDS 1257
            SSTPGSRTG     RND RN  GRDGHPSGLPRPYGGRGRGRGS N+NRG   N++R DS
Sbjct: 1471 SSTPGSRTGEIYKRRNDNRNSSGRDGHPSGLPRPYGGRGRGRGSYNNNRG---NNDRSDS 1527

Query: 1258 SYDTPKWDSANKSGDDSWGNFPGAKAQNPAGREAFP 1293
             YD  +WDS++K GDD   NFPGAK  N  G+EAFP
Sbjct: 1528 GYDGSRWDSSSKDGDDGLSNFPGAKIHNSPGKEAFP 1563

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481576|ref|XP_002278416.2| PREDICTED: transcription elongation factor SPT6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741709|emb|CBI32841.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224086751|ref|XP_002307949.1| global transcription factor group [Populus trichocarpa] gi|222853925|gb|EEE91472.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567133|ref|XP_002524548.1| suppressor of ty, putative [Ricinus communis] gi|223536178|gb|EEF37832.1| suppressor of ty, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356570403|ref|XP_003553378.1| PREDICTED: transcription elongation factor SPT6-like [Glycine max] Back     alignment and taxonomy information
>gi|356504629|ref|XP_003521098.1| PREDICTED: transcription elongation factor SPT6-like [Glycine max] Back     alignment and taxonomy information
>gi|357509195|ref|XP_003624886.1| LCR/BET1 [Medicago truncatula] gi|355499901|gb|AES81104.1| LCR/BET1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224137598|ref|XP_002322597.1| global transcription factor group [Populus trichocarpa] gi|222867227|gb|EEF04358.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145326656|ref|NP_001077775.1| transcription elongation factor SPT6 [Arabidopsis thaliana] gi|332196253|gb|AEE34374.1| transcription elongation factor SPT6 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1344
TAIR|locus:22063301647 GTB1 "global transcription fac 0.934 0.762 0.687 0.0
TAIR|locus:20151981197 AT1G63210 [Arabidopsis thalian 0.806 0.905 0.647 0.0
UNIPROTKB|E2R4A31726 SUPT6H "Uncharacterized protei 0.492 0.383 0.306 2e-121
UNIPROTKB|E1BEB81726 SUPT6H "Uncharacterized protei 0.492 0.383 0.306 2e-121
UNIPROTKB|Q7KZ851726 SUPT6H "Transcription elongati 0.492 0.383 0.304 1.2e-120
UNIPROTKB|F1RNB01725 F1RNB0 "Uncharacterized protei 0.491 0.383 0.306 1.7e-120
UNIPROTKB|F1LR361726 Supt6h "Protein Supt6h" [Rattu 0.492 0.383 0.304 2.3e-120
UNIPROTKB|E1C1S51659 Gga.31080 "Uncharacterized pro 0.486 0.394 0.305 6e-120
MGI|MGI:1077261726 Supt6 "suppressor of Ty 6" [Mu 0.492 0.383 0.304 7.8e-120
ZFIN|ZDB-GENE-030131-79491726 supt6h "suppressor of Ty 6 hom 0.485 0.377 0.311 8.4e-113
TAIR|locus:2206330 GTB1 "global transcription factor group B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4474 (1580.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 883/1284 (68%), Positives = 1000/1284 (77%)

Query:    11 KALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLL 70
             ++   PP D  SI +ES WIY QL S        R +    +G   S+++DDI +FL+L 
Sbjct:   280 ESTGSPPVDEISIEEESNWIYAQLASQL------RESDGTFDGRGFSVNKDDIAKFLELH 333

Query:    71 HLQKLDIPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFERTPTLKWHKVLWAIHDLDKKW 130
             H+QKL+IPFIAMYRKE+C SLL      +          + P  KWHKV W IHDLDKKW
Sbjct:   334 HVQKLEIPFIAMYRKEQCRSLL------DTGDFDGANQGKKPETKWHKVFWMIHDLDKKW 387

Query:   131 LLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLK 190
             LLL+KRK AL  YY KRYEEESRR+YDETRL LNQ LF+S+ KSL+ AETEREVDDVD K
Sbjct:   388 LLLRKRKMALHGYYTKRYEEESRRVYDETRLNLNQYLFESVIKSLKVAETEREVDDVDSK 447

Query:   191 FNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDE 250
             FNLHFPPGE+GVDEGQYKRPKR ++YS CSKAGLWEVA+KFGY            K+ DE
Sbjct:   448 FNLHFPPGEIGVDEGQYKRPKRKSQYSICSKAGLWEVANKFGYSAEQLGLALSLEKLVDE 507

Query:   251 LEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVST 310
             LED KETPEEMA NF CAMF +S AVL+GARHMAAVEISCEP V+KYVR I+M+NAVVST
Sbjct:   508 LEDAKETPEEMAKNFVCAMFENSLAVLKGARHMAAVEISCEPSVKKYVRGIYMENAVVST 567

Query:   311 CPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNK 370
              PT DG++ IDSFHQF+G+KWLREKPL KFE AQWLLIQK EEEKLLQVT KLPE+ +N+
Sbjct:   568 SPTADGNTVIDSFHQFSGIKWLREKPLSKFEGAQWLLIQKGEEEKLLQVTFKLPENYMNR 627

Query:   371 LFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLME 430
             L SDC EHYLS GVSK AQLWN+QR+LIL+DAL  FLLPSM KEARSL++ RAKS LL E
Sbjct:   628 LISDCNEHYLSVGVSKYAQLWNEQRKLILEDALHAFLLPSMEKEARSLLTSRAKSRLLSE 687

Query:   431 YGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFT 490
             YG+ALWNKVS GPYQ+K+ DI  DEEAAPRV+ACCWGPGKP  TFVMLDSSGEV+DVL+ 
Sbjct:   688 YGQALWNKVSAGPYQKKEMDINLDEEAAPRVMACCWGPGKPPNTFVMLDSSGEVLDVLYA 747

Query:   491 GCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVE 550
             G LT RSQNV DQQ KK+DQ+R+LKFMMDHQPHVV LGAVNLSCT LKDDIYE+IF+MVE
Sbjct:   748 GSLTSRSQNVNDQQRKKSDQDRVLKFMMDHQPHVVALGAVNLSCTRLKDDIYEVIFQMVE 807

Query:   551 EHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMV 610
             E PRDVGH MD+LSIVY DESLPRLYENSRIS +QLP Q GNV+RAVALGRYLQNPLAMV
Sbjct:   808 EKPRDVGHGMDDLSIVYVDESLPRLYENSRISGEQLPQQSGNVRRAVALGRYLQNPLAMV 867

Query:   611 ATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQ 670
             ATLCGPGREILSWKL PLENFL  DEKYGM+EQVMVD+TNQVG+DINLA   +W F+PLQ
Sbjct:   868 ATLCGPGREILSWKLHPLENFLQLDEKYGMVEQVMVDITNQVGIDINLAASHDWFFSPLQ 927

Query:   671 FISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQ 730
             FISGLGPRKAASLQRSLVRAG+IF RKD +  HGLGKKVFVNA GFLR+RRSG AASSSQ
Sbjct:   928 FISGLGPRKAASLQRSLVRAGSIFVRKDLIM-HGLGKKVFVNAAGFLRIRRSGLAASSSQ 986

Query:   731 FIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLL 790
             FIDLLDDTRIHPESY LAQELAK++Y+ D+ GD NDDEDA+EMAIEHVRDRP  L+  +L
Sbjct:   987 FIDLLDDTRIHPESYSLAQELAKDIYDEDVRGDSNDDEDAIEMAIEHVRDRPASLRKVVL 1046

Query:   791 DRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVV 850
             D ++  KKRENK+ET   I REL  GFQDWR  +KEPS DEEFYMISGETEDT+AEGR+V
Sbjct:  1047 DEYLASKKRENKKETYSNIIRELSCGFQDWRIPFKEPSPDEEFYMISGETEDTIAEGRIV 1106

Query:   851 QATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDS-ELSDKLHEGDILTCKIKSIQKNR 909
             QA+VRR+Q  RAICVL+SGL GMLMKED+SDD RD  +L+D+L EGDILTCKIKSIQK R
Sbjct:  1107 QASVRRLQNGRAICVLDSGLTGMLMKEDFSDDGRDIVDLADQLKEGDILTCKIKSIQKQR 1166

Query:   910 YQVFLVCRESEMRNNRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHP 969
             YQVFL+C+ESEMRNNR+QH QN+D YYH                      HFK R+IVHP
Sbjct:  1167 YQVFLICKESEMRNNRHQHNQNVDAYYHEDRNSLQLVKEKARKEKELVRKHFKSRMIVHP 1226

Query:   970 CFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDI 1029
              FQN+TAD+A + LS K+ GESI+RPSSRG ++LTLTLK+YDGVYAHK+I EGGK++KDI
Sbjct:  1227 RFQNITADQATEYLSDKDFGESIVRPSSRGLNFLTLTLKIYDGVYAHKEIAEGGKENKDI 1286

Query:  1030 KSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEK 1089
              SL  IGKTL IGEDTFEDLDEV+DRY+DPLVSHLK ML+YRKFRKG+K+EVD+LLRIEK
Sbjct:  1287 TSLQCIGKTLTIGEDTFEDLDEVMDRYVDPLVSHLKTMLNYRKFRKGTKSEVDDLLRIEK 1346

Query:  1090 AEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYF 1149
              E P+RIVY FGISHEHPGTFIL+YIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYF
Sbjct:  1347 GENPSRIVYCFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYF 1406

Query:  1150 QRHIDDPQGDSAPSIRSVAAMVPMRSPANXXXXXXXXXXXXXXXXXXXXXRDRSSTPGSX 1209
             QRHIDDP  +SAPSIRS+AA VPMRSPA+                      DRS   GS 
Sbjct:  1407 QRHIDDPLQESAPSIRSIAAKVPMRSPADHGSSGGSGWGSSQSEGGWKGNSDRS---GSG 1463

Query:  1210 XXXXXXXXXXXXXXHPSGLPRPYXXXXXXXXXXXXXXXXXXXXERQDSSYDTPKWDSANK 1269
                           HPSG PRPY                    +RQD + D   W + N 
Sbjct:  1464 RGGEYRNGGGRDG-HPSGAPRPYGGRGRGRGRGRRDDMNS---DRQDGNGD---WGN-ND 1515

Query:  1270 SG--DDSWGNFPGAK-AQNPAGRE 1290
             +G  D  WGN  G       AG++
Sbjct:  1516 TGTADGGWGNSGGGGWGSESAGKK 1539
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0006333 "chromatin assembly or disassembly" evidence=ISS
GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2015198 AT1G63210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4A3 SUPT6H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEB8 SUPT6H "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZ85 SUPT6H "Transcription elongation factor SPT6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNB0 F1RNB0 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1LR36 Supt6h "Protein Supt6h" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C1S5 Gga.31080 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:107726 Supt6 "suppressor of Ty 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7949 supt6h "suppressor of Ty 6 homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GTB902
global transcription factor group (1649 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1344
cd0992889 cd09928, SH2_Cterm_SPT6_like, C-terminal Src homol 7e-32
cd0991885 cd09918, SH2_Nterm_SPT6_like, N-terminal Src homol 6e-31
COG2183780 COG2183, Tex, Transcriptional accessory protein [T 1e-30
smart0073299 smart00732, YqgFc, Likely ribonuclease with RNase 5e-16
COG2183780 COG2183, Tex, Transcriptional accessory protein [T 7e-15
pfam09371193 pfam09371, Tex_N, Tex-like protein N-terminal doma 8e-09
smart0031672 smart00316, S1, Ribosomal protein S1-like RNA-bind 4e-07
cd0017379 cd00173, SH2, Src homology 2 (SH2) domain 8e-06
smart0025284 smart00252, SH2, Src homology 2 domains 1e-05
pfam1283665 pfam12836, HHH_3, Helix-hairpin-helix motif 1e-05
pfam10427136 pfam10427, Ago_hook, Argonaute hook 5e-04
pfam10427136 pfam10427, Ago_hook, Argonaute hook 6e-04
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.002
COG0539541 COG0539, RpsA, Ribosomal protein S1 [Translation, 0.002
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 0.003
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.004
>gnl|CDD|198182 cd09928, SH2_Cterm_SPT6_like, C-terminal Src homology 2 (SH2) domain found in Spt6 Back     alignment and domain information 
 Score =  119 bits (300), Expect = 7e-32
 Identities = 36/88 (40%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 1067 MLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYI-RSTNPHHEYI 1125
            ML++ K+ +G+K EV++LL+ EK   P RI Y F +S ++PG F+L+Y+  +T   HEY+
Sbjct: 2    MLNHHKYFRGTKEEVEKLLKEEKKANPKRIPYAFCVSKKYPGKFLLSYLPANTRVRHEYV 61

Query: 1126 GLYPKGFKFRKRMFEDIDRLVAYFQRHI 1153
             + P GF+FR ++F  +D L+ +F+ H 
Sbjct: 62   KVTPDGFRFRGQVFPSVDSLLNWFKEHF 89

Spt6 is an essential transcription elongation factor and histone chaperone that binds the C-terminal repeat domain (CTD) of RNA polymerase II. Spt6 contains a tandem SH2 domain with a novel structure and CTD-binding mode. The tandem SH2 domain binds to a serine 2-phosphorylated CTD peptide in vitro, whereas its N-terminal SH2 subdomain does not. CTD binding requires a positively charged crevice in the C-terminal SH2 subdomain, which lacks the canonical phospho-binding pocket of SH2 domains. The tandem SH2 domain is apparently required for transcription elongation in vivo as its deletion in cells is lethal in the presence of 6-azauracil. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 89
>gnl|CDD|198174 cd09918, SH2_Nterm_SPT6_like, N-terminal Src homology 2 (SH2) domain found in Spt6 Back     alignment and domain information
>gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription] Back     alignment and domain information
>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold Back     alignment and domain information
>gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription] Back     alignment and domain information
>gnl|CDD|150144 pfam09371, Tex_N, Tex-like protein N-terminal domain Back     alignment and domain information
>gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain Back     alignment and domain information
>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains Back     alignment and domain information
>gnl|CDD|205097 pfam12836, HHH_3, Helix-hairpin-helix motif Back     alignment and domain information
>gnl|CDD|220748 pfam10427, Ago_hook, Argonaute hook Back     alignment and domain information
>gnl|CDD|220748 pfam10427, Ago_hook, Argonaute hook Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1344
KOG18561299 consensus Transcription elongation factor SPT6 [RN 100.0
COG2183780 Tex Transcriptional accessory protein [Transcripti 100.0
PF14633220 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_ 100.0
PF09371193 Tex_N: Tex-like protein N-terminal domain; InterPr 100.0
PF14639150 YqgF: Holliday-junction resolvase-like of SPT6 ; P 100.0
PF14635104 HHH_7: Helix-hairpin-helix motif ; PDB: 3PSI_A 3PS 99.97
PF14878115 DLD: Death-like domain of SPT6; PDB: 3PSI_A 3PSF_A 99.96
KOG1857623 consensus Transcription accessory protein TEX, con 99.89
PF14641121 HTH_44: Helix-turn-helix DNA-binding domain of SPT 99.85
KOG1857623 consensus Transcription accessory protein TEX, con 99.56
COG1098129 VacB Predicted RNA binding protein (contains ribos 99.47
TIGR01259120 comE comEA protein. This model describes the ComEA 99.44
COG0539541 RpsA Ribosomal protein S1 [Translation, ribosomal 99.36
COG0539541 RpsA Ribosomal protein S1 [Translation, ribosomal 99.33
cd0570574 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a 99.32
cd0570673 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a 99.27
cd0570472 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a 99.24
cd0446183 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp 99.24
PF1283665 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE 99.21
cd0570373 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R 99.2
cd0569870 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp 99.19
PF0057574 S1: S1 RNA binding domain; InterPro: IPR003029 Rib 99.19
cd0569769 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t 99.17
COG1555149 ComEA DNA uptake protein and related DNA-binding p 99.17
cd0569474 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp 99.16
PRK08582139 hypothetical protein; Provisional 99.15
cd05693100 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp 99.14
cd0569671 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t 99.13
PRK07252120 hypothetical protein; Provisional 99.1
cd0569069 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p 99.1
cd0445276 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr 99.09
cd0568673 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom 99.08
PTZ00248319 eukaryotic translation initiation factor 2 subunit 99.07
cd0570768 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a 99.07
cd0569173 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p 99.07
cd0570877 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a 99.07
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 99.05
PRK07899486 rpsA 30S ribosomal protein S1; Reviewed 99.04
cd0568972 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p 99.02
PRK05807136 hypothetical protein; Provisional 99.01
PRK13806491 rpsA 30S ribosomal protein S1; Provisional 98.99
cd0569269 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p 98.99
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 98.99
PRK08059123 general stress protein 13; Validated 98.99
PRK12269863 bifunctional cytidylate kinase/ribosomal protein S 98.96
cd0568770 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib 98.96
cd0569566 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t 98.92
cd0568479 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal 98.92
PHA0294588 interferon resistance protein; Provisional 98.91
cd0568568 S1_Tex S1_Tex: The C-terminal S1 domain of a trans 98.9
PRK12269863 bifunctional cytidylate kinase/ribosomal protein S 98.9
PRK13806491 rpsA 30S ribosomal protein S1; Provisional 98.85
cd0578986 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. 98.83
KOG09211282 consensus Dosage compensation complex, subunit MLE 98.82
smart0031672 S1 Ribosomal protein S1-like RNA-binding domain. 98.82
PRK07400318 30S ribosomal protein S1; Reviewed 98.79
PRK06299565 rpsA 30S ribosomal protein S1; Reviewed 98.79
cd0447268 S1_PNPase S1_PNPase: Polynucleotide phosphorylase 98.79
cd0446567 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib 98.78
cd0568868 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p 98.78
COG1093269 SUI2 Translation initiation factor 2, alpha subuni 98.78
cd0447183 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai 98.78
cd0445482 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA- 98.73
cd0445388 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik 98.73
KOG09211282 consensus Dosage compensation complex, subunit MLE 98.72
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 98.72
cd0570270 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R 98.72
PRK07899486 rpsA 30S ribosomal protein S1; Reviewed 98.72
PRK03987262 translation initiation factor IF-2 subunit alpha; 98.71
PRK06299565 rpsA 30S ribosomal protein S1; Reviewed 98.69
cd0447377 S1_RecJ_like S1_RecJ_like: The S1 domain of the ar 98.67
TIGR00717516 rpsA ribosomal protein S1. This model provides tru 98.66
TIGR0042669 competence protein ComEA helix-hairpin-helix repea 98.65
PRK06676390 rpsA 30S ribosomal protein S1; Reviewed 98.58
PRK07400318 30S ribosomal protein S1; Reviewed 98.56
cd0016465 S1_like S1_like: Ribosomal protein S1-like RNA-bin 98.56
PRK02515132 psbU photosystem II complex extrinsic protein prec 98.55
PRK00087647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 98.51
TIGR00717516 rpsA ribosomal protein S1. This model provides tru 98.5
KOG3973465 consensus Uncharacterized conserved glycine-rich p 98.5
PRK06676390 rpsA 30S ribosomal protein S1; Reviewed 98.44
cd0446099 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. 98.43
smart0025284 SH2 Src homology 2 domains. Src homology 2 domains 98.42
PRK00087647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 98.4
KOG3973465 consensus Uncharacterized conserved glycine-rich p 98.4
PRK09521189 exosome complex RNA-binding protein Csl4; Provisio 98.35
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 98.29
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 98.25
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 98.23
PRK11642813 exoribonuclease R; Provisional 98.13
TIGR00448179 rpoE DNA-directed RNA polymerase (rpoE), archaeal 98.09
cd0445567 S1_NusA S1_NusA: N-utilizing substance A protein ( 98.05
TIGR02063709 RNase_R ribonuclease R. This family consists of an 98.04
cd0579192 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. 98.0
cd0017394 SH2 Src homology 2 domains; Signal transduction, i 97.99
TIGR00358654 3_prime_RNase VacB and RNase II family 3'-5' exori 97.97
smart0073299 YqgFc Likely ribonuclease with RNase H fold. YqgF 97.83
COG1095183 RPB7 DNA-directed RNA polymerase, subunit E' [Tran 97.83
PF0001777 SH2: SH2 domain; InterPro: IPR000980 The Src homol 97.74
KOG1070 1710 consensus rRNA processing protein Rrp5 [RNA proces 97.7
PRK08563187 DNA-directed RNA polymerase subunit E'; Provisiona 97.7
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 97.67
PRK09202470 nusA transcription elongation factor NusA; Validat 97.52
KOG0790 600 consensus Protein tyrosine phosphatase Corkscrew a 97.49
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 97.33
COG1096188 Predicted RNA-binding protein (consists of S1 doma 97.25
PRK05054644 exoribonuclease II; Provisional 97.12
PHA0285886 EIF2a-like PKR inhibitor; Provisional 97.1
PF1044782 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: I 97.02
cd0446288 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly 96.92
TIGR02062639 RNase_B exoribonuclease II. This family consists o 96.84
TIGR01953341 NusA transcription termination factor NusA. This m 96.84
cd0569972 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t 96.78
cd0579086 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domai 96.77
PRK12327362 nusA transcription elongation factor NusA; Provisi 96.67
COG0557706 VacB Exoribonuclease R [Transcription] 96.54
COG2996287 Predicted RNA-bindining protein (contains S1 and H 96.38
cd0017394 SH2 Src homology 2 domains; Signal transduction, i 96.3
COG1097239 RRP4 RNA-binding protein Rrp4 and related proteins 96.29
PTZ00162176 DNA-directed RNA polymerase II subunit 7; Provisio 96.19
TIGR00757414 RNaseEG ribonuclease, Rne/Rng family. The C-termin 96.09
PRK00109138 Holliday junction resolvase-like protein; Reviewed 96.07
KOG2916304 consensus Translation initiation factor 2, alpha s 96.03
smart0025284 SH2 Src homology 2 domains. Src homology 2 domains 96.03
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 95.92
KOG1999 1024 consensus RNA polymerase II transcription elongati 95.8
COG5164607 SPT5 Transcription elongation factor [Transcriptio 95.73
TIGR00250130 RNAse_H_YqgF RNAse H-fold protein YqgF. This prote 95.51
PF0001777 SH2: SH2 domain; InterPro: IPR000980 The Src homol 95.44
PRK12328374 nusA transcription elongation factor NusA; Provisi 94.96
PF03652135 UPF0081: Uncharacterised protein family (UPF0081); 94.51
KOG3409193 consensus Exosomal 3'-5' exoribonuclease complex, 94.5
KOG2044931 consensus 5'-3' exonuclease HKE1/RAT1 [Replication 94.42
PRK12329449 nusA transcription elongation factor NusA; Provisi 93.83
PF1457990 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI 93.62
KOG19991024 consensus RNA polymerase II transcription elongati 93.57
PF1350961 S1_2: S1 domain; PDB: 3GO5_A. 93.27
COG0816141 Predicted endonuclease involved in recombination ( 93.12
PRK00039164 ruvC Holliday junction resolvase; Reviewed 92.83
cd00529154 RuvC_resolvase Holliday junction resolvases (HJRs) 91.98
PRK10811 1068 rne ribonuclease E; Reviewed 91.83
KOG1264 1267 consensus Phospholipase C [Lipid transport and met 91.67
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 91.54
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 91.45
PF02075149 RuvC: Crossover junction endodeoxyribonuclease Ruv 90.7
PRK11712489 ribonuclease G; Provisional 89.89
COG0322581 UvrC Nuclease subunit of the excinuclease complex 89.89
KOG1264 1267 consensus Phospholipase C [Lipid transport and met 89.82
KOG2044931 consensus 5'-3' exonuclease HKE1/RAT1 [Replication 89.37
PRK14666694 uvrC excinuclease ABC subunit C; Provisional 88.47
TIGR00228156 ruvC crossover junction endodeoxyribonuclease RuvC 88.43
KOG4792293 consensus Crk family adapters [Signal transduction 87.97
PRK14670574 uvrC excinuclease ABC subunit C; Provisional 87.81
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 87.63
PRK00116192 ruvA Holliday junction DNA helicase RuvA; Reviewed 87.54
PF0651493 PsbU: Photosystem II 12 kDa extrinsic protein (Psb 86.72
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 86.71
KOG4637464 consensus Adaptor for phosphoinositide 3-kinase [S 86.56
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 86.31
KOG4226379 consensus Adaptor protein NCK/Dock, contains SH2 a 85.91
PRK14672691 uvrC excinuclease ABC subunit C; Provisional 85.88
KOG3298170 consensus DNA-directed RNA polymerase subunit E' [ 85.59
KOG0790 600 consensus Protein tyrosine phosphatase Corkscrew a 85.45
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 84.85
PF03934280 T2SK: Type II secretion system (T2SS), protein K; 84.6
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 84.48
PRK00558598 uvrC excinuclease ABC subunit C; Validated 84.34
PF14633220 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_ 83.4
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 82.98
PF06682318 DUF1183: Protein of unknown function (DUF1183); In 82.55
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 82.35
PRK14602203 ruvA Holliday junction DNA helicase RuvA; Provisio 82.31
COG0632201 RuvA Holliday junction resolvasome, DNA-binding su 82.3
KOG4661940 consensus Hsp27-ERE-TATA-binding protein/Scaffold 82.21
KOG4792293 consensus Crk family adapters [Signal transduction 81.98
PRK14604195 ruvA Holliday junction DNA helicase RuvA; Provisio 81.87
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-228  Score=2041.91  Aligned_cols=1090  Identities=37%  Similarity=0.594  Sum_probs=996.5

Q ss_pred             ccccCCCCCCCchhHHHHHHHHHHHHhcCcCcccccCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCccceeeecchhhh
Q 039337            9 LRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEEC   88 (1344)
Q Consensus         9 ~~~~~~~~~~~~~el~~ea~WI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~vL~l~~~~~~eVPFIarYRKE~~   88 (1344)
                      .+.++  .+++++||++||.|||..+..+-      .+.+.   ....+.+.++|++||+||+.+++||||||+|||||+
T Consensus       179 ~~~~v--~~~~~de~e~Ea~WI~~~~~~~q------~~~d~---~~~~~s~~e~I~~vl~f~r~q~levpFI~~yRkEyi  247 (1299)
T KOG1856|consen  179 RRAPV--TDVSEDELEEEANWIYEKTLSNQ------EDFDK---MRLGPSFKEAIKKVLEFIRRQHLEVPFIAFYRKEYI  247 (1299)
T ss_pred             hhccC--CCCCchHHHHHHHHHHHHHhhhh------hhhhh---hccCchHHHHHHHHHHHHHhhcccccHHHHHHHHHh
Confidence            34444  56678999999999999888752      22221   123467999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhH
Q 039337           89 LSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLF  168 (1344)
Q Consensus        89 ~~l~~~~~~~e~~~~~~~~~~~~~~l~~~~dLw~I~~ld~k~~~L~~RK~~l~~~~~k~~~~~~~~~~~~~~l~~~~~l~  168 (1344)
                      .+++.+.+            +-......+.|+|.|..|.+++..++..+..++..+..              +...+.+.
T Consensus       248 ~~~l~~~d------------ld~~~~~~~~dk~~i~~L~~km~~~q~~~~~~~~~~~~--------------~~~~d~~~  301 (1299)
T KOG1856|consen  248 RSLLEESD------------LDEKWCLLSIDKWDITSLFEKMWSLQEEKRYVLELYPH--------------LDAEDAIV  301 (1299)
T ss_pred             hhhhcccc------------ccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhCCc--------------ccchhccc
Confidence            99986521            11122222359999999999999999999888776642              11122222


Q ss_pred             HHHHHHHHhhhhhhhHhhhhcccccCCCCCCCCCCc---------------cCccCCCCcchHHHHHHcChHHHHHHhcc
Q 039337          169 DSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDE---------------GQYKRPKRSTKYSSCSKAGLWEVASKFGY  233 (1344)
Q Consensus       169 ~~~~~~l~~a~t~eel~Di~~~~~l~y~~~~~~~~~---------------~~~kr~~r~t~y~~a~~~GL~~la~~fgl  233 (1344)
                      .+..+   ...+|++|.|||.+|.|.|+.++.+|..               .++|++.|+|.|++|+++||+.||+.||+
T Consensus       302 t~~~e---~~~sl~~l~Dl~~~~~~~y~~~i~~m~~~k~~r~~~~e~~~~~~e~kq~~r~s~y~~~~~sgi~~~a~~fGl  378 (1299)
T KOG1856|consen  302 TKYFE---RLSSLDELKDLNKYFELAYSNEIPRMESEKFNRHFGGECETDEAELKQGSRYSIYEKFRKSGIYELAKEFGL  378 (1299)
T ss_pred             ccccc---hhhhhHHHHHHHHHHHHHHHhhhHHHHHHHhhhhcccccccchhhhcccccccHHHHHHhccHHHHHHHcCC
Confidence            22222   3348999999999999999988776522               24689999999999999999999999999


Q ss_pred             ChHHHhhhhhhcccCCCCCCCCCCHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhceEEEEEEeC
Q 039337          234 SSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT  313 (1344)
Q Consensus       234 s~~~f~~nl~~~~~~~~~~~~~~~p~~~A~~~i~~~~~t~e~vl~ga~~ilA~eis~dp~vR~~vR~~~~~~a~Ist~~T  313 (1344)
                      ||+||++||++.+++|++++++..|+++|.+|+|+.|.|++.||+||++|+|.+||++|.||+.+|..|+++|+++++||
T Consensus       379 saeq~~enl~~~~~~~~ve~~~~~P~E~a~~yv~~~f~~~~~vl~~ak~~lA~eis~ep~iRk~vR~~f~~~a~~~i~pT  458 (1299)
T KOG1856|consen  379 SAEQFGENLRDFKQRHEVEQRSRYPEELALQYVCAVFSSSEAVLSGAKKMLAKEISREPQLRKSVRQCFNERAKVNIHPT  458 (1299)
T ss_pred             CHHHHHHHHHhhhccchhhccccCHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhheeeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccccccccccccccCcCCCchHHHHHHhhhccccEEEEEecChhhhhhHHHHHHhhhccCCCcchhhhHHH
Q 039337          314 PDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWND  393 (1344)
Q Consensus       314 ~kg~~~id~~h~y~~~Kyl~~kpv~~l~~~q~L~i~raE~egll~v~i~~~~~~~~~~~~~l~~~~~~d~~s~~~~~wn~  393 (1344)
                      ++|.+.||..||||.||||++|||++|...|||.+..||+|||+.|+|.++.+..++++++|.++|++|++|+.+++||.
T Consensus       459 kkG~~~Id~~h~~y~~Kyl~~kPv~~f~~d~~l~l~~aeeEkl~lv~~~~~~e~~~~y~e~l~~~y~sd~~Se~a~eWN~  538 (1299)
T KOG1856|consen  459 KKGRKLIDSAHPYYDIKYLKNKPVRSFRLDQFLFLHMAEEEKLLLVTFKLEMEGPNDYIEELKEFYLSDNFSENAQEWNR  538 (1299)
T ss_pred             CCcceeccccChHHHHHHHHhCChhhhcccHHHHHHHhhhhhccceeeehhhcchhhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCc-eEeEeecCCCC-C
Q 039337          394 QRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAP-RVLACCWGPGK-P  471 (1344)
Q Consensus       394 ~r~~~l~~a~~~~L~P~~~revr~~L~~~Ae~~~i~~~~~nL~~~L~~~P~~~~~~~~~~~~~~~~-rVlai~~dpg~-~  471 (1344)
                      +|++||++|+.++++|.|.+|+|+.|+.+|++.+++.|+..|+++|++|||.|.  +.+.++...| |||+|||+++. .
T Consensus       539 ~R~~~v~~A~~k~~~~~m~~elr~~L~~rak~~v~k~c~~kl~~~ls~apy~p~--~~~~~d~~~p~rvl~~~~~~~~~~  616 (1299)
T KOG1856|consen  539 QRKEIVNSAVQKFFKPDMVKELRSTLTSRAKKRVAKVCRVKLYSKLSQAPYRPD--DDTFEDEKIPKRVLAVCGGTERSD  616 (1299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCC--CCCcccccccceEEEeccCCCCCc
Confidence            999999999999999999999999999999999999999999999999999996  2233344444 89999999988 5


Q ss_pred             ceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcCCCcchhhhHHHHHHHHHHHHhh
Q 039337          472 ETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEE  551 (1344)
Q Consensus       472 g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~~t~s~~~l~~~~~~~v~~~~~~  551 (1344)
                      .+++|+||..|+++|++++..+..+.+.+..+.++++.+..|.+||++++||||+|++.+.-.+.++..|.++|.++.- 
T Consensus       617 a~f~v~vn~~Gd~vD~lrl~~~~kr~~~~n~~~r~~k~~d~f~kFI~~~kP~vi~v~g~~r~~q~~~~~I~~~v~el~~-  695 (1299)
T KOG1856|consen  617 AIFCVLVNFEGDLVDYLRLVDITKRKTLVNDEERKKKFQDLFKKFIEKKKPHVIGVSGENRLKQKIYEAIRQLVHELLI-  695 (1299)
T ss_pred             eEEEEEEcCCCceeeeeeccchhhhhhccchhhhhhhHHHHHHHHHHhcCCCEEEeeCCCchhHHHHHHHHHHHHhccc-
Confidence            6788899999999999999999988776667778888899999999999999999999987777777776666655421 


Q ss_pred             CCCCcCCCCCcceEEEecCCCchHHhhhHHhhhcCCCCchhhHHHHHhhhhhcccceehhcccCCCcccccccccCcccc
Q 039337          552 HPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENF  631 (1344)
Q Consensus       552 ~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a~~e~p~~~~~~R~avslaR~lqdPl~e~~~l~~~~~~~~~i~~~~~Q~~  631 (1344)
                           .++..+|+|++|++++|+||++|++|..|||++|+++++|||||||+||||.||+.||++++|++|+++||+|+.
T Consensus       696 -----~~~~~~ipv~~vd~ela~lY~nS~~a~~efpd~pp~~k~avsLAR~iq~PL~EYa~l~~~dedi~sls~hp~Q~~  770 (1299)
T KOG1856|consen  696 -----SDQGHPIPVIYVDNELARLYQNSRRAEAEFPDYPPTLKQAVSLARYIQDPLIEYAQLCSPDEDILSLSLHPLQEL  770 (1299)
T ss_pred             -----cccCCCcceeecccHHHHHHHhhhhhHhhcccCChHHHHHHHHHHHhcCcHHHHHHhcCcccceeeeeechhhhc
Confidence                 123568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhhhhhhhhhhcccccccccccccccccccccchhhccCCCHHHHHHHHHHHHh-cCCCCCHHHHhhccCCCHHHH
Q 039337          632 LTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVR-AGAIFTRKDFVTAHGLGKKVF  710 (1344)
Q Consensus       632 ~~~~~l~~~l~~~~~~~vn~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~-~g~~~sr~~L~~v~~iG~kvf  710 (1344)
                      ||+++|.++|+.+|+++||.||||||.|+.|||++++||||||||||||..+++.+.+ ++++.+|+||++.|.||||||
T Consensus       771 l~~eql~e~Le~~~Vd~vn~VGVDIN~a~~n~~~~~lLqyI~GlGpRKa~~lLKsl~~~~~~i~~R~qLit~c~lg~kVF  850 (1299)
T KOG1856|consen  771 LPREQLLEALETAFVDIVNEVGVDINKAANNPYYANLLQYICGLGPRKATSLLKSLKRNNRRIENRSQLITHCILGPKVF  850 (1299)
T ss_pred             CCHHHHHHHHHHHHHHhHhhhhhhHHHHhcChhhhhhHHHhcCCCcccHHHHHHHHHHcCchhhhHHHHHHhcccCceeE
Confidence            9999999999999999999999999999999999999999999999999999999988 559999999999999999999


Q ss_pred             HhccCcEEEecCCCCCCccccCCcCcCCCCCCCCHHHHHHHHHHHcCCCcCCCCCChhHHHHHHHHHHhcChhhhhccCh
Q 039337          711 VNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLL  790 (1344)
Q Consensus       711 ~n~a~FlrI~~~~~~~~~~~~~d~LD~TrIHPEsY~~A~kma~dal~~d~~~d~~~~~~~~~~~v~~i~~~~~kl~~ldl  790 (1344)
                      .||||||+|+++.++++++.++|+||+||||||+|+||||||.||+++|+.    ++++.+++++++|+++|++|++|+|
T Consensus       851 mNcagFikI~~~~l~~std~~~evLD~TRVHPEtYelArKmA~Dale~D~~----~E~~~~~~ale~i~E~p~rLkdL~L  926 (1299)
T KOG1856|consen  851 MNCAGFIKIDTSELSDSTDSYIEVLDGTRVHPETYELARKMAVDALEYDED----EEDGTPEGALEEILEEPARLKDLDL  926 (1299)
T ss_pred             eecceeEEEchhhccccchhhhhhccCCcCCccchHHHHHHHHHHHhcCcc----ccccChHHHHHHHHhChHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999852    2456788999999999999999999


Q ss_pred             HHH---HHHhhccCccchHHHHHHHHhcCccCccCCCCCCCchhhhhhhccCCcccccCCeEEEEEEEEEeccc---EEE
Q 039337          791 DRH---IKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQR---AIC  864 (1344)
Q Consensus       791 ~~~---~e~~~~~~~~~tL~~I~~EL~~p~~D~R~~~~~p~~~e~f~~lTget~~~l~~G~iV~g~V~~V~~~g---~fV  864 (1344)
                      ++|   ++++++++|..||++|+.||.++|.|+|.+|+.|+.+++|.||||||+++|.+|.+|+|+|++|+...   +-|
T Consensus       927 daya~eLerq~~~~K~~tl~dI~~ELsdgykd~R~~f~~l~~eeiF~mLTget~et~~~g~iV~~~V~~vt~rr~~Cv~v 1006 (1299)
T KOG1856|consen  927 DAYADELERQGFGRKKNTLYDIRLELSDGYKDLRNPFHELTGEEIFDMLTGETPETFYEGAIVPVTVTKVTHRRGICVRV 1006 (1299)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhhcchhhhccccCCCCHHHHHHHHhCCChhHhccCceEEEeeeEEEecccceeEE
Confidence            999   56788899999999999999999999999999999999999999999999999999999999999988   455


Q ss_pred             EeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccccccccccCCCCCCCCcccccccch
Q 039337          865 VLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYYHEERSSRQ  944 (1344)
Q Consensus       865 ~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~dl~~~~~~~~~~~D~y~~~~~~~~~  944 (1344)
                      +++||+.|+|+.+++|+. .+.+|...+++||+|.|||++||+++|.+.|||+.+|+++....+....|.|||..+.+-+
T Consensus      1007 ~ld~G~~g~i~~~~~Sd~-~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sdlk~~n~~~~~~~d~y~d~~~e~~d 1085 (1299)
T KOG1856|consen 1007 RLDCGVTGFILAKNLSDR-DVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSDLKDQNNEDLSLRDTYWDEVQESAD 1085 (1299)
T ss_pred             EecCCCceeeeccccChh-hccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHHhhhccccccccCchHHHHHHhhhh
Confidence            999999999999999997 7889999999999999999999999999999999999998666777788999998877667


Q ss_pred             HHHHHHHHHHHHhhhccccccccCCCcccCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCC
Q 039337          945 SEQEKARKEKELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGK 1024 (1344)
Q Consensus       945 ~e~~~~~k~~~~~~~~~~~RvI~HP~F~n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K 1024 (1344)
                      .++++..+ ++++++.+++|||.||+|+|+|++||++||+++++||+||||||||.|||+|||||+|||||||+|+|+.|
T Consensus      1086 ~E~~k~~~-~~~~r~~r~~RvI~HP~F~n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eK 1164 (1299)
T KOG1856|consen 1086 AEQEKDEK-KAEQRKQRVSRVIAHPLFKNLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEK 1164 (1299)
T ss_pred             HHhhhhhh-HHHHHHhhhhhhhcCccccCCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhc
Confidence            66665554 56778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccccccCceeeeCCccccchHHHHHHHHhhhHHHHHHHhhCcccccCCHHHHHHHHHHHHHhCCCcceEEEEeCC
Q 039337         1025 DHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISH 1104 (1344)
Q Consensus      1025 ~~~~~~~~~sLG~~L~i~~~~y~DLDEii~~~V~pm~~~v~~i~~h~kf~~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~ 1104 (1344)
                      +|     .||||++|+|++++|+||||||+|||+||++++++|++|+||+.||++++|+||+.||+.||++|||+||+||
T Consensus      1165 En-----~fslg~~l~i~~e~feDLDEiI~r~vqpm~~~~~em~nhkyf~~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~ 1239 (1299)
T KOG1856|consen 1165 EN-----YFSLGKTLWIGGEEFEDLDEIIARYVQPMATNLREMTNHKYFFTGTKKEVEKLLRDYKKVNPKKSVYFFCASH 1239 (1299)
T ss_pred             cc-----cccccceEEECCcccccHHHHHHHHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHhccCCCeeeEEEEecc
Confidence            99     5999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEecCCCCceeeEEEecCceEEcccccccHHHHHHHHHhhcCCCC
Q 039337         1105 EHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQ 1157 (1344)
Q Consensus      1105 ~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~~~~~L~~~fK~~~~d~~ 1157 (1344)
                      +|||+|+|+|+|+++++||||+|+|+||+|++++|+||++||+|||.|++++.
T Consensus      1240 ~~PG~F~L~y~~~~k~~heyv~v~p~g~~~rg~~f~tld~L~~~FK~h~~~~~ 1292 (1299)
T KOG1856|consen 1240 EHPGKFCLSYKPSSKPRHEYVKVVPEGFRFRGQNFGTLDELCRWFKRHYKDPT 1292 (1299)
T ss_pred             cCCceEEEEeccCCCccceeEEEcccceEEecccchhHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999976

>COG2183 Tex Transcriptional accessory protein [Transcription] Back     alignment and domain information
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A Back     alignment and domain information
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT Back     alignment and domain information
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A Back     alignment and domain information
>PF14635 HHH_7: Helix-hairpin-helix motif ; PDB: 3PSI_A 3PSF_A Back     alignment and domain information
>PF14878 DLD: Death-like domain of SPT6; PDB: 3PSI_A 3PSF_A Back     alignment and domain information
>KOG1857 consensus Transcription accessory protein TEX, contains S1 domain [Transcription] Back     alignment and domain information
>PF14641 HTH_44: Helix-turn-helix DNA-binding domain of SPT6; PDB: 3PSI_A 3PSF_A Back     alignment and domain information
>KOG1857 consensus Transcription accessory protein TEX, contains S1 domain [Transcription] Back     alignment and domain information
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01259 comE comEA protein Back     alignment and domain information
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains Back     alignment and domain information
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A Back     alignment and domain information
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] Back     alignment and domain information
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK08582 hypothetical protein; Provisional Back     alignment and domain information
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK07252 hypothetical protein; Provisional Back     alignment and domain information
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain Back     alignment and domain information
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain Back     alignment and domain information
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>PRK05807 hypothetical protein; Provisional Back     alignment and domain information
>PRK13806 rpsA 30S ribosomal protein S1; Provisional Back     alignment and domain information
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>PRK08059 general stress protein 13; Validated Back     alignment and domain information
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional Back     alignment and domain information
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide Back     alignment and domain information
>PHA02945 interferon resistance protein; Provisional Back     alignment and domain information
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa Back     alignment and domain information
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional Back     alignment and domain information
>PRK13806 rpsA 30S ribosomal protein S1; Provisional Back     alignment and domain information
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>PRK07400 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain Back     alignment and domain information
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain Back     alignment and domain information
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain Back     alignment and domain information
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated Back     alignment and domain information
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease Back     alignment and domain information
>TIGR00717 rpsA ribosomal protein S1 Back     alignment and domain information
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region Back     alignment and domain information
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>PRK07400 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>TIGR00717 rpsA ribosomal protein S1 Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain Back     alignment and domain information
>smart00252 SH2 Src homology 2 domains Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11642 exoribonuclease R; Provisional Back     alignment and domain information
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form Back     alignment and domain information
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain Back     alignment and domain information
>TIGR02063 RNase_R ribonuclease R Back     alignment and domain information
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain Back     alignment and domain information
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr) Back     alignment and domain information
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information
>smart00732 YqgFc Likely ribonuclease with RNase H fold Back     alignment and domain information
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] Back     alignment and domain information
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps [] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PRK09202 nusA transcription elongation factor NusA; Validated Back     alignment and domain information
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05054 exoribonuclease II; Provisional Back     alignment and domain information
>PHA02858 EIF2a-like PKR inhibitor; Provisional Back     alignment and domain information
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [] Back     alignment and domain information
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain Back     alignment and domain information
>TIGR02062 RNase_B exoribonuclease II Back     alignment and domain information
>TIGR01953 NusA transcription termination factor NusA Back     alignment and domain information
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain Back     alignment and domain information
>PRK12327 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>COG0557 VacB Exoribonuclease R [Transcription] Back     alignment and domain information
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] Back     alignment and domain information
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr) Back     alignment and domain information
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional Back     alignment and domain information
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family Back     alignment and domain information
>PRK00109 Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00252 SH2 Src homology 2 domains Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF Back     alignment and domain information
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps [] Back     alignment and domain information
>PRK12328 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination Back     alignment and domain information
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification] Back     alignment and domain information
>PRK12329 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>PF13509 S1_2: S1 domain; PDB: 3GO5_A Back     alignment and domain information
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B Back     alignment and domain information
>PRK00039 ruvC Holliday junction resolvase; Reviewed Back     alignment and domain information
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination Back     alignment and domain information
>PRK10811 rne ribonuclease E; Reviewed Back     alignment and domain information
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination [] Back     alignment and domain information
>PRK11712 ribonuclease G; Provisional Back     alignment and domain information
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism] Back     alignment and domain information
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification] Back     alignment and domain information
>PRK14666 uvrC excinuclease ABC subunit C; Provisional Back     alignment and domain information
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC Back     alignment and domain information
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms] Back     alignment and domain information
>PRK14670 uvrC excinuclease ABC subunit C; Provisional Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed Back     alignment and domain information
>PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK14672 uvrC excinuclease ABC subunit C; Provisional Back     alignment and domain information
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription] Back     alignment and domain information
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms] Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF03934 T2SK: Type II secretion system (T2SS), protein K; InterPro: IPR005628 Members of this family are involved in the general secretion pathway Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK00558 uvrC excinuclease ABC subunit C; Validated Back     alignment and domain information
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] Back     alignment and domain information
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms] Back     alignment and domain information
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1344
3psi_A1219 Crystal Structure Of The Spt6 Core Domain From Sacc 4e-56
3psf_A1030 Crystal Structure Of The Spt6 Core Domain From Sacc 3e-38
3psk_A211 Crystal Structure Of The Spt6 Tandem Sh2 Domain Fro 3e-16
2l3t_A199 Solution Structure Of Tandem Sh2 Domain From Spt6 L 3e-16
3psj_A210 Crystal Structure Of The Spt6 Tandem Sh2 Domain Fro 1e-15
3pjp_A199 A Tandem Sh2 Domain In Transcription Elongation Fac 4e-15
2oce_A780 Crystal Structure Of Tex Family Protein Pa5201 From 6e-13
3bzc_A785 Crystal Structure Of The Tex Protein From Pseudomon 6e-13
2xp1_A178 Structure Of The Tandem Sh2 Domains From Antonospor 6e-10
3gxw_A103 Structure Of The Sh2 Domain Of The Candida Glabrata 2e-06
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From Saccharomyces Cerevisiae, Form Spt6(239-1451) Length = 1219 Back     alignment and structure 
Iteration: 1

 Score =  217 bits (552), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 241/1096 (21%), Positives = 451/1096 (41%), Gaps = 86/1096 (7%)
Query: 53   GHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFERTP 112
             +DL+  ++ I   +  +  + L++PFI  YR+    S  KD                  
Sbjct: 132  NYDLTEFKEAIGNAIKFITKENLEVPFIYAYRRNYISSREKD-----------------G 174
Query: 113  TLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRI-YDETRLALNQQLFDSI 171
             L     LW I  LD ++  L  +K  +Q +Y + + ++     Y + +   +    +S+
Sbjct: 175  FLLTEDDLWDIVSLDIEFHSLVNKKDYVQRFYAELHIDDPIVTEYFKNQNTASIAELNSL 234
Query: 172  SKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKF 231
                +  E +   +  ++  N     G+  +    Y++ K S  Y + S  G+   A   
Sbjct: 235  QDIYDYLEFKYANEINEMFINHTGKTGKKHLKNSSYEKFKASPLYQAVSDIGI--SAEDV 292
Query: 232  GYXXXXXXXXXXXXKMGDELEDPKETPEEM------ASNFKCAMFNS-SQAVLQGARHMA 284
            G             ++   ++ P   P E+      A++    +F S ++  +   +   
Sbjct: 293  G------ENISSQHQIHPPVDHPSSKPVEVIESILNANSGDLQVFTSNTKLAIDTVQKYY 346
Query: 285  AVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQ 344
            ++E+S    +R+ VRS F    +     T  G   I     +  +K+   +    F    
Sbjct: 347  SLELSKNTKIREKVRSDFSKYYLADVVLTAKGKKEIQKGSLYEDIKYAINRTPMHFRRDP 406
Query: 345  WLLIQKAEEEKLLQVTIKLPEDS----LNKLFSDCKEHYLSDGVSKSAQLWNDQRELILK 400
             + ++  E E L  +++KL   S    +  LF    E   +   S  A  WN+ R+L   
Sbjct: 407  DVFLKMVEAESLNLLSVKLHMSSQAQYIEHLFQIALE---TTNTSDIAIEWNNFRKLAFN 463
Query: 401  DALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPR 460
             A+D  +   + +E +  ++   +  +          K+   P+     D        P+
Sbjct: 464  QAMDK-IFQDISQEVKDNLTKNCQKLVAKTVRHKFMTKLDQAPFIPNVRD-----PKIPK 517
Query: 461  VLACCWGPGK---PETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQER----L 513
            +L+   G G+        V ++  G+ +          R   + D    K + E+    L
Sbjct: 518  ILSLTCGQGRFGADAIIAVYVNRKGDFI----------RDYKIVDNPFDKTNPEKFEDTL 567
Query: 514  LKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLP 573
               +   QP+ + +   N         + E++ K      R  GH    + I+Y ++ + 
Sbjct: 568  DNIIQSCQPNAIGINGPNPKTQKFYKRLQEVLHKKQIVDSR--GHT---IPIIYVEDEVA 622
Query: 574  RLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLT 633
              Y+NS  ++ + P +   VK  +AL RY+ +PL   A L     E+ S  + P +N L+
Sbjct: 623  IRYQNSERAAQEFPNKPPLVKYCIALARYMHSPLLEYANLTS--EEVRSLSIHPHQNLLS 680
Query: 634  PDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA- 692
             ++    +E   VD+ N V +++N A    +  + L++ISG G RKA    +SL R    
Sbjct: 681  SEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEP 740
Query: 693  IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQF-IDLLDDTRIHPESYGLAQEL 751
            +  R+  +T + L K +F+N+ GFL +  + +         D LD TRIHPE Y LA ++
Sbjct: 741  LLARQQLITHNILHKTIFMNSAGFLYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKV 800
Query: 752  AKEV--YNRDIEGDLNDDEDALEMAIEHVRDRPDL---LKTYLLDRHIKEKKREN---KR 803
            A +   Y+ D   +  +++  +   IE +R+ PD    L++  L+ + +E ++     K 
Sbjct: 801  AADALEYDPDTIAE-KEEQGTMSEFIELLREDPDRRAKLESLNLESYAEELEKNTGLRKL 859
Query: 804  ETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAI 863
              L  I  EL+ GF++ RN +     DE F  ++GE+E T  +G ++   V R      I
Sbjct: 860  NNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHNDII 919
Query: 864  CVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRN 923
            C   S +  ++  + ++        ++    G     K+  I        +   + +++ 
Sbjct: 920  CTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVKQ 979
Query: 924  NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
                   + DP                             R+I HP +      +A   L
Sbjct: 980  QYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVINHPYYFPFNGRQAEDYL 1039
Query: 984  SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
             +KE GE +IR SSRG  +L +T K+   ++ H DI E  K++      + +GK L +  
Sbjct: 1040 RSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENP-----LALGKVLIVDN 1094
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGIS 1103
              + DLD+++  Y+   V  L  M S  KF+ G+K +V + +       P + VY F ++
Sbjct: 1095 QKYNDLDQIIVEYLQNKVRLLNEMTSSEKFKSGTKKDVVKFIEDYSRVNPNKSVYYFSLN 1154
Query: 1104 HEHPGTFILTYIRSTN 1119
            H++PG F L +  + N
Sbjct: 1155 HDNPGWFYLMFKINAN 1170
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From Saccharomyces Cerevisiae, Form Spt6(236-1259) Length = 1030 Back     alignment and structure
>pdb|3PSK|A Chain A, Crystal Structure Of The Spt6 Tandem Sh2 Domain From Saccharomyces Cerevisiae, Form Native Spt6 (1247-1451) Length = 211 Back     alignment and structure
>pdb|2L3T|A Chain A, Solution Structure Of Tandem Sh2 Domain From Spt6 Length = 199 Back     alignment and structure
>pdb|3PSJ|A Chain A, Crystal Structure Of The Spt6 Tandem Sh2 Domain From Saccharomyces Cerevisiae, Form Se-Spt6 (1247-1451) Length = 210 Back     alignment and structure
>pdb|3PJP|A Chain A, A Tandem Sh2 Domain In Transcription Elongation Factor Spt6 Binds The Phosphorylated Rna Polymerase Ii C-Terminal Repeat Domain(Ctd) Length = 199 Back     alignment and structure
>pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From Pseudomonas Aeruginosa Length = 780 Back     alignment and structure
>pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas Aeruginosa, Crystal Form I Length = 785 Back     alignment and structure
>pdb|2XP1|A Chain A, Structure Of The Tandem Sh2 Domains From Antonospora Locustae Transcription Elongation Factor Spt6 Length = 178 Back     alignment and structure
>pdb|3GXW|A Chain A, Structure Of The Sh2 Domain Of The Candida Glabrata Transcription Elongation Factor Spt6, Crystal Form A Length = 103 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1344
3psi_A1219 Transcription elongation factor SPT6; nucleus; 3.3 100.0
3psf_A1030 Transcription elongation factor SPT6; nucleus; 2.5 100.0
3bzc_A785 TEX; helix-turn-helix, helix-hairpin-helix, S1 dom 100.0
3or8_A197 Transcription elongation factor SPT6; SH2, CTD bin 100.0
2xp1_A178 SPT6; transcription, IWS1, histone chaperone, mRNA 100.0
3aev_A275 Translation initiation factor 2 subunit alpha; pro 99.47
2k4k_A130 GSP13, general stress protein 13; cytoplasm, stres 99.32
1luz_A88 Protein K3, protein K2; stranded anti-parallel bet 99.28
2khj_A109 30S ribosomal protein S1; OB fold, acetylation, ph 99.28
2k52_A80 Uncharacterized protein MJ1198; metal-binding, zin 99.28
1kl9_A182 Eukaryotic translation initiation factor 2 subuni; 99.27
2khi_A115 30S ribosomal protein S1; acetylation, phosphoprot 99.25
2a19_A175 EIF-2- alpha, eukaryotic translation initiation fa 99.24
1a81_A254 SYK kinase; complex (transferase-peptide), SYK, ki 99.22
2eqs_A103 ATP-dependent RNA helicase DHX8; S1 domain, OB-fol 99.22
2cqo_A119 Nucleolar protein of 40 kDa; S1 domain, OB-fold, s 99.2
2oq1_A254 Tyrosine-protein kinase ZAP-70; tandem SH2 domains 99.18
1q8k_A308 Eukaryotic translation initiation factor 2 subunit 99.03
1wi5_A119 RRP5 protein homolog; S1 domain, OB-fold, structur 99.01
3arc_U97 Photosystem II 12 kDa extrinsic protein; PSII, mem 98.91
3cw2_C266 Translation initiation factor 2 subunit alpha; AIF 98.86
2shp_A 525 SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin 98.83
3go5_A285 Multidomain protein with S1 RNA-binding domains; s 98.82
1go3_E187 DNA-directed RNA polymerase subunit E; transferase 98.8
1s5l_U134 Photosystem II 12 kDa extrinsic protein; photosynt 98.79
4fbn_A246 1-phosphatidylinositol 4,5-bisphosphate phosphodi 98.79
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 98.76
1y14_B171 B16, RPB7, DNA-directed RNA polymerase II 19 kDa p 98.75
2nn6_I209 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, 98.74
2b8k_G215 B16, DNA-directed RNA polymerase II 19 kDa polypep 98.74
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 98.69
4ayb_E180 DNA-directed RNA polymerase; transferase, multi-su 98.68
2duy_A75 Competence protein comea-related protein; helix-ha 98.67
3m7n_A179 Putative uncharacterized protein AF_0206; exosome, 98.65
2c35_B172 Human RPB7, DNA-directed RNA polymerase II 19 kDa 98.59
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 98.53
2je6_I251 RRP4, exosome complex RNA-binding protein 1; nucle 98.51
3h0g_G172 DNA-directed RNA polymerase II subunit RPB7; trans 98.48
2ozo_A 613 Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t 98.45
2ba0_A229 Archeal exosome RNA binding protein RRP4; RNAse PH 98.43
2z0s_A235 Probable exosome complex RNA-binding protein 1; al 98.4
2edu_A98 Kinesin-like protein KIF22; kinesin-like DNA bindi 98.35
4fl3_A 635 Tyrosine-protein kinase SYK; transferase; HET: ANP 98.31
2b3o_A 532 Tyrosine-protein phosphatase, non-receptor type 6; 98.29
3ps5_A 595 Tyrosine-protein phosphatase non-receptor type 6; 98.25
2i5h_A205 Hypothetical protein AF1531; PFAM:DUF655, PSI-2, s 98.17
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 98.0
1r1p_A100 GRB2-related adaptor protein 2; SH2, GADS, phospho 97.97
1vhx_A150 Putative holliday junction resolvase; structural g 97.94
1rja_A100 Tyrosine-protein kinase 6; human protein tyrosine 97.94
1jyr_A96 Growth factor receptor-bound protein 2; receptor b 97.93
3go5_A285 Multidomain protein with S1 RNA-binding domains; s 97.93
1lkk_A105 Human P56 tyrosine kinase; complex (tyrosine kinas 97.88
1hh2_P344 NUSA, N utilization substance protein A; transcrip 97.82
2eo3_A111 CRK-like protein; phosphorylation, repeat, SH2 dom 97.82
2cia_A102 Cytoplasmic protein NCK2; SH2-domain, SH3 domain, 97.81
3ayh_B203 DNA-directed RNA polymerase III subunit RPC8; tran 97.8
2ekx_A110 Cytoplasmic tyrosine-protein kinase BMX; SH2 domai 97.8
3k2m_A112 Proto-oncogene tyrosine-protein kinase ABL1; engin 97.8
1ju5_A109 CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid 97.79
2dlz_A118 Protein VAV-2; RHO family guanine nucleotide excha 97.76
3us4_A98 Megakaryocyte-associated tyrosine-protein kinase; 97.74
2ecd_A119 Tyrosine-protein kinase ABL2; SH2 domain, phosphot 97.74
1d4t_A104 T cell signal transduction molecule SAP; SH2 domai 97.73
2hdv_A111 SH2-B PH domain containing signaling mediator 1 ga 97.73
2iug_A120 Phosphatidylinositol 3-kinase regulatory alpha sub 97.72
1i3z_A103 EWS/FLI1 activated transcript 2; SH2 domain phosph 97.71
2ckz_B218 C25, DNA-directed RNA polymerase III 25 KD polypep 97.7
2cs0_A119 Hematopoietic SH2 domain containing; ALX, FLJ14886 97.69
1mil_A104 SHC adaptor protein; SH2 domain, phosphorylation, 97.68
2vif_A141 Suppressor of cytokine signalling 6; growth regula 97.68
3eaz_A106 Tyrosine-protein kinase CSK; SH2, disulfide, oxidi 97.68
1h9o_A112 Phosphatidylinositol 3-kinase; transferase/recepto 97.67
2vnu_D760 Exosome complex exonuclease RRP44; hydrolase-RNA c 97.66
2gsb_A119 RAS GTPase-activating protein 1; GAP, RAS P21 prot 97.65
2crh_A138 VAV proto-oncogene; oncoprotein, structural genomi 97.63
3ov1_A117 Growth factor receptor-bound protein 2; GRB2 SH2 d 97.63
2dly_A121 FYN-related kinase; BRK family kinase, structural 97.63
3s9k_A118 Tyrosine-protein kinase ITK/TSK; proline isomeriza 97.6
1blj_A114 P55 BLK protein tyrosine kinase; signal transducti 97.6
2nn6_H308 Exosome complex exonuclease RRP4; RNA, exosome, PM 97.59
1nrv_A105 Growth factor receptor-bound protein 10; dimer, si 97.56
3tkz_A109 Tyrosine-protein phosphatase non-receptor type 11; 97.56
2ysx_A119 Signaling inositol polyphosphate phosphatase SHIP 97.55
1aot_F106 FYN protein-tyrosine kinase; SH2 domain, signal tr 97.55
2lnw_A122 VAV-2, guanine nucleotide exchange factor VAV2; si 97.52
3pqz_A117 Growth factor receptor-bound protein 7; SH2, binds 97.51
2c9w_A169 Suppressor of cytokine signaling 2; growth regulat 97.5
2eob_A124 1-phosphatidylinositol-4,5-bisphosphate phosphodie 97.49
2ge9_A125 Tyrosine-protein kinase BTK; SH2 domain, structure 97.49
2wp8_J977 Exosome complex exonuclease DIS3; nucleus, hydrola 97.47
2eo6_A141 B-cell linker protein; SH2, cytoplasmic adapter pr 97.47
1wqu_A114 C-FES, proto-oncogene tyrosine-protein kinase FES/ 97.47
2bh8_A101 1B11; transcription, molecular evolution, unique a 97.45
2kk6_A116 Proto-oncogene tyrosine-protein kinase FER; method 97.45
2hmh_A152 Suppressor of cytokine signaling 3; SOCS3, GP130, 97.44
2el8_A118 Signal-transducing adaptor protein 2; SH2 domain, 97.44
2dm0_A125 Tyrosine-protein kinase TXK; TEC family kinase, st 97.43
2bx2_L517 Ribonuclease E, RNAse E; RNA-binding, RNA turnover 97.4
1ka6_A128 SH2 domain protein 1A; SH2 domain, protein-peptide 97.39
2kno_A131 Tensin-like C1 domain-containing phosphatase; SH2 97.37
2aug_A126 Growth factor receptor-bound protein 14; phosphory 97.33
2dx0_A138 Phospholipase C, gamma 2; phosphoric diester hydro 97.24
1k0r_A366 NUSA; two component arrangement, S1 domain, two K- 97.23
2bbu_A164 Suppressor of cytokine signaling 3; SH2 domain, ex 97.16
2ja9_A175 Exosome complex exonuclease RRP40; RNA-binding pro 97.14
4d8k_A175 Tyrosine-protein kinase LCK; protein kinases, SH2 97.12
3qwx_X174 Cell death abnormality protein 2; cell engulfment, 97.01
2dvj_A230 V-CRK sarcoma virus CT10 oncogene homolog, isoform 96.99
2izv_A187 Suppressor of cytokine signaling 4; signal transdu 96.98
2asb_A251 Transcription elongation protein NUSA; protein-RNA 96.96
2bbu_A164 Suppressor of cytokine signaling 3; SH2 domain, ex 96.96
2oq1_A254 Tyrosine-protein kinase ZAP-70; tandem SH2 domains 96.83
2dly_A121 FYN-related kinase; BRK family kinase, structural 96.78
2gsb_A119 RAS GTPase-activating protein 1; GAP, RAS P21 prot 96.7
1r1p_A100 GRB2-related adaptor protein 2; SH2, GADS, phospho 96.64
1a81_A254 SYK kinase; complex (transferase-peptide), SYK, ki 96.63
3ov1_A117 Growth factor receptor-bound protein 2; GRB2 SH2 d 96.63
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 96.57
4fbn_A246 1-phosphatidylinositol 4,5-bisphosphate phosphodi 96.56
3maz_A125 Signal-transducing adaptor protein 1; modular doma 96.51
2vif_A141 Suppressor of cytokine signalling 6; growth regula 96.49
2y3a_B302 Phosphatidylinositol 3-kinase regulatory subunit; 96.44
2cia_A102 Cytoplasmic protein NCK2; SH2-domain, SH3 domain, 96.4
3hhm_B373 NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil 96.33
2eyz_A304 V-CRK sarcoma virus CT10 oncogene homolog isoform 96.26
2dlz_A118 Protein VAV-2; RHO family guanine nucleotide excha 96.26
1jyr_A96 Growth factor receptor-bound protein 2; receptor b 96.26
2hdv_A111 SH2-B PH domain containing signaling mediator 1 ga 96.21
2cs0_A119 Hematopoietic SH2 domain containing; ALX, FLJ14886 96.19
2eo3_A111 CRK-like protein; phosphorylation, repeat, SH2 dom 96.15
1d4t_A104 T cell signal transduction molecule SAP; SH2 domai 96.15
1rja_A100 Tyrosine-protein kinase 6; human protein tyrosine 96.08
1i3z_A103 EWS/FLI1 activated transcript 2; SH2 domain phosph 96.01
2nn6_G289 Exosome complex exonuclease RRP40; RNA, exosome, P 95.98
2c9w_A169 Suppressor of cytokine signaling 2; growth regulat 95.97
3ci0_K298 Pseudopilin GSPK; general secretory pathway, pseud 95.93
2hmh_A152 Suppressor of cytokine signaling 3; SOCS3, GP130, 95.9
3qwy_A308 Cell death abnormality protein 2; cell engulfment, 95.88
2iug_A120 Phosphatidylinositol 3-kinase regulatory alpha sub 95.87
1h9o_A112 Phosphatidylinositol 3-kinase; transferase/recepto 95.86
1ka6_A128 SH2 domain protein 1A; SH2 domain, protein-peptide 95.83
1nu0_A138 Hypothetical protein YQGF; structural genomics, st 95.82
2lnw_A122 VAV-2, guanine nucleotide exchange factor VAV2; si 95.72
2lqn_A303 CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT 94.68
3tkz_A109 Tyrosine-protein phosphatase non-receptor type 11; 95.65
2ekx_A110 Cytoplasmic tyrosine-protein kinase BMX; SH2 domai 95.54
3pqz_A117 Growth factor receptor-bound protein 7; SH2, binds 95.52
2kno_A131 Tensin-like C1 domain-containing phosphatase; SH2 95.51
3k2m_A112 Proto-oncogene tyrosine-protein kinase ABL1; engin 95.51
2ysx_A119 Signaling inositol polyphosphate phosphatase SHIP 95.49
2ecd_A119 Tyrosine-protein kinase ABL2; SH2 domain, phosphot 95.47
1ju5_A109 CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid 95.46
3eaz_A106 Tyrosine-protein kinase CSK; SH2, disulfide, oxidi 95.44
3us4_A98 Megakaryocyte-associated tyrosine-protein kinase; 95.42
2eo6_A141 B-cell linker protein; SH2, cytoplasmic adapter pr 95.31
1nrv_A105 Growth factor receptor-bound protein 10; dimer, si 95.27
1blj_A114 P55 BLK protein tyrosine kinase; signal transducti 95.27
1mil_A104 SHC adaptor protein; SH2 domain, phosphorylation, 95.2
2eob_A124 1-phosphatidylinositol-4,5-bisphosphate phosphodie 95.17
2dm0_A125 Tyrosine-protein kinase TXK; TEC family kinase, st 95.15
2kk6_A116 Proto-oncogene tyrosine-protein kinase FER; method 95.11
2aug_A126 Growth factor receptor-bound protein 14; phosphory 95.08
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 95.08
2dx0_A138 Phospholipase C, gamma 2; phosphoric diester hydro 95.01
2crh_A138 VAV proto-oncogene; oncoprotein, structural genomi 94.98
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 94.93
2shp_A525 SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin 94.89
1wqu_A114 C-FES, proto-oncogene tyrosine-protein kinase FES/ 94.89
2y3a_B302 Phosphatidylinositol 3-kinase regulatory subunit; 94.86
2ozo_A613 Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t 94.83
2xp1_A178 SPT6; transcription, IWS1, histone chaperone, mRNA 94.57
1lkk_A105 Human P56 tyrosine kinase; complex (tyrosine kinas 94.5
3s9k_A118 Tyrosine-protein kinase ITK/TSK; proline isomeriza 94.49
2el8_A118 Signal-transducing adaptor protein 2; SH2 domain, 94.44
4fl3_A 635 Tyrosine-protein kinase SYK; transferase; HET: ANP 94.33
2ge9_A125 Tyrosine-protein kinase BTK; SH2 domain, structure 94.31
1gri_A217 Growth factor bound protein 2; SH2, SH3, signal tr 94.26
1aot_F106 FYN protein-tyrosine kinase; SH2 domain, signal tr 93.91
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 93.89
3qwx_X174 Cell death abnormality protein 2; cell engulfment, 93.85
1ixr_A191 Holliday junction DNA helicase RUVA; heterooligome 93.42
1hjr_A158 Holliday junction resolvase (RUVC); site-specific 93.35
3maz_A125 Signal-transducing adaptor protein 1; modular doma 93.27
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 93.26
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 93.21
1opk_A495 P150, C-ABL, proto-oncogene tyrosine-protein kinas 93.13
4ep4_A166 Crossover junction endodeoxyribonuclease RUVC; res 93.01
2bh8_A101 1B11; transcription, molecular evolution, unique a 92.94
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 92.77
4d8k_A175 Tyrosine-protein kinase LCK; protein kinases, SH2 92.7
2cr4_A126 3BP-2, SH3 domain-binding protein 2; structural ge 92.37
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 92.31
3ps5_A 595 Tyrosine-protein phosphatase non-receptor type 6; 92.27
1cuk_A203 RUVA protein; DNA repair, SOS response, DNA-bindin 92.21
1vq8_Y241 50S ribosomal protein L32E; ribosome 50S, protein- 92.21
2izv_A187 Suppressor of cytokine signaling 4; signal transdu 92.01
1fmk_A452 C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros 91.76
2h8h_A535 Proto-oncogene tyrosine-protein kinase SRC; SRC ki 91.72
2b3o_A532 Tyrosine-protein phosphatase, non-receptor type 6; 91.59
2lqn_A303 CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT 90.13
1k9a_A450 Carboxyl-terminal SRC kinase; COOH-terminal SRC ki 89.77
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 89.63
3qwy_A308 Cell death abnormality protein 2; cell engulfment, 88.81
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 88.76
2w9m_A578 Polymerase X; SAXS, DNA repair, DNA polymerase, DN 88.62
3c65_A226 Uvrabc system protein C; UVRC, endonuclease, nucle 88.52
1qcf_A454 Haematopoetic cell kinase (HCK); tyrosine kinase-i 88.37
3cbl_A377 C-FES, proto-oncogene tyrosine-protein kinase FES/ 88.32
2eyz_A304 V-CRK sarcoma virus CT10 oncogene homolog isoform 88.23
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 88.16
2dvj_A230 V-CRK sarcoma virus CT10 oncogene homolog, isoform 87.8
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 87.49
2cr4_A126 3BP-2, SH3 domain-binding protein 2; structural ge 87.39
2r7d_A469 Ribonuclease II family protein; structural genomic 87.26
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 87.24
2bgw_A219 XPF endonuclease; hydrolase, structure specific en 87.07
3hhm_B373 NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil 86.6
2b5u_A 551 Colicin E3; high resolution colicin E3, ribosome i 85.8
3or8_A197 Transcription elongation factor SPT6; SH2, CTD bin 84.9
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 82.77
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 81.27
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=4.8e-231  Score=2210.33  Aligned_cols=1074  Identities=22%  Similarity=0.358  Sum_probs=706.2

Q ss_pred             ccccC-CCCCCCchhHHHHHHHHHHHHhcCcCcccccCCCCCCCCCCC-CCCCHHHHHHHHHHhhhCCCccceeeecchh
Q 039337            9 LRKAL-AGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHD-LSISRDDIMRFLDLLHLQKLDIPFIAMYRKE   86 (1344)
Q Consensus         9 ~~~~~-~~~~~~~~el~~ea~WI~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~~vL~l~~~~~~eVPFIarYRKE   86 (1344)
                      .+..+ ++.+++++||++||+||+++||.+.+.       ..    .. ...++++|++||+||+++++|||||||||||
T Consensus        97 ~~~~~~~~~~~~~~el~eEa~WI~~~~~~~~~~-------~~----~~~~~~~~~aI~~vL~fi~~eg~eVPFIarYRKE  165 (1219)
T 3psi_A           97 LRAGITDYGNMSSEDQELERNWIAEKISVDKNF-------DA----NYDLTEFKEAIGNAIKFITKENLEVPFIYAYRRN  165 (1219)
T ss_dssp             HGGGCTTSSCCCHHHHHHHHHHHHHHHHHHHCC-------CS----SCCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCGG
T ss_pred             hcccccCCCCCCHHHHHHHHHHHHHHHhccCCC-------Cc----ccchhHHHHHHHHHHHHHHhcCCcCchHHHHHhh
Confidence            34555 888999999999999999999975421       11    11 2568899999999999889999999999999


Q ss_pred             hhcccccccccccccCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhh
Q 039337           87 ECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQ  166 (1344)
Q Consensus        87 ~~~~l~~~~~~~e~~~~~~~~~~~~~~l~~~~dLw~I~~ld~k~~~L~~RK~~l~~~~~k~~~~~~~~~~~~~~l~~~~~  166 (1344)
                      ++.+.+..                ...|+ +++||+|++||+||++|++||++|+++|++              ++++++
T Consensus       166 ~~~~~tg~----------------~~~Ld-e~dLw~I~eld~k~~~L~~RK~~l~k~ie~--------------l~ltde  214 (1219)
T 3psi_A          166 YISSREKD----------------GFLLT-EDDLWDIVSLDIEFHSLVNKKDYVQRFYAE--------------LHIDDP  214 (1219)
T ss_dssp             GSBCSSSS----------------SCBCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------TCCCCH
T ss_pred             hhccCCCc----------------cccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCCHH
Confidence            97432100                01233 469999999999999999999999999985              245677


Q ss_pred             hHHHHHH--HHHhhhhhhhHhhhhcccccCCCCCCCCCC----ccCccCCCCcchHHHHHHcChHHHHHHhccChHHHhh
Q 039337          167 LFDSISK--SLEAAETEREVDDVDLKFNLHFPPGEVGVD----EGQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGL  240 (1344)
Q Consensus       167 l~~~~~~--~l~~a~t~eel~Di~~~~~l~y~~~~~~~~----~~~~kr~~r~t~y~~a~~~GL~~la~~fgls~~~f~~  240 (1344)
                      |+++++.  .+..|.|++||+|||+||.|+|+.++.+|.    .++.||++|++.|++||+.+++.||+.|||||++||+
T Consensus       215 l~~~i~~~~~~~~a~t~eeLeDly~~~~~~y~~~l~~~~~~~~~~~kkk~~~~s~Y~~~k~~~a~~la~~~GL~~~~lae  294 (1219)
T 3psi_A          215 IVTEYFKNQNTASIAELNSLQDIYDYLEFKYANEINEMFINHTGKTGKKHLKNSSYEKFKASPLYQAVSDIGISAEDVGE  294 (1219)
T ss_dssp             HHHHHHHHCC--------HHHHHHHHHHHHTHHHHHHHHHHHC-------------------CTTHHHHTTSSCHHHHHH
T ss_pred             HHHHHHhhhhhcccCCHHHHHHHHhcccCcchhhhHHHhhcccccccCCCccccHHHHHHHHhHHHHHHHhCCCHHHHHH
Confidence            7776633  344899999999999999999997665552    1223455678999999999999999999999999999


Q ss_pred             hhhhc-ccCCCCCCCCCCHHHHHHhhhhhc-------CCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhceEEEEEEe
Q 039337          241 QLSLE-KMGDELEDPKETPEEMASNFKCAM-------FNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCP  312 (1344)
Q Consensus       241 nl~~~-~~~~~~~~~~~~p~~~A~~~i~~~-------~~t~e~vl~ga~~ilA~eis~dp~vR~~vR~~~~~~a~Ist~~  312 (1344)
                      ||..+ +++|+++|+..+|+++|++|++++       |+|+++||+||++|+|++||+||.+|++||+.|+++|+|+|++
T Consensus       295 nl~~~~~~~~~~~d~~~~p~~~A~~~v~~~~~~~~~~~~~~e~aL~gAr~IlAe~is~dp~~R~~vR~~~~~~a~i~s~~  374 (1219)
T 3psi_A          295 NISSQHQIHPPVDHPSSKPVEVIESILNANSGDLQVFTSNTKLAIDTVQKYYSLELSKNTKIREKVRSDFSKYYLADVVL  374 (1219)
T ss_dssp             HHTTSSCSSCCCCCSSSCHHHHHHCC--------------CHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTSEEEEEEC
T ss_pred             HHHhccccccCcCCCcCCHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHheEEEEEEE
Confidence            99997 888999999999999999999876       9999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccccccccccccCcCCCc--hHHHHHHhhhccccEEEEEecChhhhhhHHHHHHh-hhccCCCcchhh
Q 039337          313 TPDGDSAIDSFHQFAGVKWLREKPLRKFED--AQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKE-HYLSDGVSKSAQ  389 (1344)
Q Consensus       313 T~kg~~~id~~h~y~~~Kyl~~kpv~~l~~--~q~L~i~raE~egll~v~i~~~~~~~~~~~~~l~~-~~~~d~~s~~~~  389 (1344)
                      |++|.+.+|.||+||+|||+.++|++.|.+  +|||+|+|||+||+|+|+|.++++  ..+++.|.. +|.++++|..++
T Consensus       375 t~kG~~~~d~~~~Y~d~k~~~~k~~~h~~~~p~r~Lai~raE~EglL~v~i~~~~~--~~~~~~l~~~~~~~~~~s~~a~  452 (1219)
T 3psi_A          375 TAKGKKEIQKGSLYEDIKYAINRTPMHFRRDPDVFLKMVEAESLNLLSVKLHMSSQ--AQYIEHLFQIALETTNTSDIAI  452 (1219)
T ss_dssp             CTTTTTTTTTTSTTTTTTTCCSCCHHHHHHCTHHHHHHHHHHCC---EEEEEETTH--HHHHHHHHHHSSCCCCCSHHHH
T ss_pred             ecCCccccccccchHhhHhHHhcCchhhcccHHHHHHHHHhhhcCceEEEEecCch--hHHHHHHHHHHhccccccchHH
Confidence            999999999999999999999999888754  499999999999999999999985  346777777 677888899999


Q ss_pred             hHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCceEeEeecCCC
Q 039337          390 LWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPG  469 (1344)
Q Consensus       390 ~wn~~r~~~l~~a~~~~L~P~~~revr~~L~~~Ae~~~i~~~~~nL~~~L~~~P~~~~~~~~~~~~~~~~rVlai~~dpg  469 (1344)
                      .||.+|++||++||++ |+|+|++|+|+.|+++|++++|++|++||+++|+||||+|.     ...+..++||||++|.+
T Consensus       453 ~wn~~r~~ai~da~kr-L~p~ie~e~r~~L~~~Ae~~ai~~f~~nL~~lL~~aP~~p~-----~~lg~~~~VlaldpG~r  526 (1219)
T 3psi_A          453 EWNNFRKLAFNQAMDK-IFQDISQEVKDNLTKNCQKLVAKTVRHKFMTKLDQAPFIPN-----VRDPKIPKILSLTCGQG  526 (1219)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCSS-----SSSCCCCCEEEEECTTC
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----cccCCCCeEEEecCCCC
Confidence            9999999999999999 99999999999999999999999999999999999999984     23456789999955544


Q ss_pred             C---CceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcCCCcchhhhHHHHHHHHH
Q 039337          470 K---PETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIF  546 (1344)
Q Consensus       470 ~---~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~~t~s~~~l~~~~~~~v~  546 (1344)
                      .   +|||+||||++|+|+++..+   +++..   +++..+++.+.|.+||.+|+|+||||||+|++|.+|.+++.++|.
T Consensus       527 ~~g~~g~k~a~vD~~G~vl~~~~i---~~~~~---~~~~~~~a~~~l~~li~~~~~~vIaIGn~sret~~l~~~l~~~i~  600 (1219)
T 3psi_A          527 RFGADAIIAVYVNRKGDFIRDYKI---VDNPF---DKTNPEKFEDTLDNIIQSCQPNAIGINGPNPKTQKFYKRLQEVLH  600 (1219)
T ss_dssp             CTTTTCEEEEEECTTSCEEEEEEE---CSCTT---CSSCSHHHHHHHHHHHHHHCCSEEEECCSSTHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCEEEEEEE---cCCCC---ChhhHHHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence            3   38999999999999998554   22211   122345567899999999999999999999988888887776665


Q ss_pred             HHHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHhhhcCCCCchhhHHHHHhhhhhcccceehhcccCCCccccccccc
Q 039337          547 KMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLC  626 (1344)
Q Consensus       547 ~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a~~e~p~~~~~~R~avslaR~lqdPl~e~~~l~~~~~~~~~i~~~  626 (1344)
                      +..   .  ......+|+|++|+++||||||+|++|.+|||++|+++|+||||||||||||+|||+|+.  ++++||+||
T Consensus       601 ~~~---~--~~~~~~~i~vviV~e~gAsvYsaS~~A~~EfPd~d~~~R~AVSIaRrlQDPLaElvki~p--kdi~sigvg  673 (1219)
T 3psi_A          601 KKQ---I--VDSRGHTIPIIYVEDEVAIRYQNSERAAQEFPNKPPLVKYCIALARYMHSPLLEYANLTS--EEVRSLSIH  673 (1219)
T ss_dssp             HTT---C--BCSSSCBCCEEECCCTTHHHHHTSHHHHHHCTTCCHHHHHHHHHHHHHHCHHHHHHHSCH--HHHHTSCCC
T ss_pred             hhc---c--ccccCCCccEEEECchHHHHHhcCHHHHhhCcCCCHHHHHHHHHHHHHhCcHHHHhccCc--ccceeeecc
Confidence            321   0  011123589999999999999999999999999999999999999999999999999931  467899999


Q ss_pred             CccccCChhhhhhhhhhhhhcccccccccccccccccccccchhhccCCCHHHHHHHHHHH-HhcCCCCCHHHHhhccCC
Q 039337          627 PLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGL  705 (1344)
Q Consensus       627 ~~Q~~~~~~~l~~~l~~~~~~~vn~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r-~~~g~~~sr~~L~~v~~i  705 (1344)
                      ||||+|++++|.++|+.+|++|||.||||||+|+.|||.+++|||||||||+||++||+|| +.||+|.||+||++|+||
T Consensus       674 ~yQhdv~q~~L~~~L~~vv~d~VN~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~i  753 (1219)
T 3psi_A          674 PHQNLLSSEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNIL  753 (1219)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHHHHHCEEHHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHTTCS
T ss_pred             ccccccCHHHHHHHHHHHHHHHHhccCccHHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999 569999999999999999


Q ss_pred             CHHHHHhccCcEEEecCCC-CCCccccCCcCcCCCCCCCCHHHHHHHHHHHcCCCcCCCCCCh--hHHHHHHHHHHhcCh
Q 039337          706 GKKVFVNAVGFLRVRRSGQ-AASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDD--EDALEMAIEHVRDRP  782 (1344)
Q Consensus       706 G~kvf~n~a~FlrI~~~~~-~~~~~~~~d~LD~TrIHPEsY~~A~kma~dal~~d~~~d~~~~--~~~~~~~v~~i~~~~  782 (1344)
                      |+|+|+||||||||++... ..+++...||||+||||||+|++|+|||+||++++++ |+.+.  +..+..++++++++|
T Consensus       754 G~k~fe~~agflrI~~~~~~~~~~~~~~~pLD~T~VHPEsY~~a~kma~dal~~~~e-di~~~~~~~~~~~~v~~l~~~p  832 (1219)
T 3psi_A          754 HKTIFMNSAGFLYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVAADALEYDPD-TIAEKEEQGTMSEFIELLREDP  832 (1219)
T ss_dssp             CHHHHHHHGGGEECCC------------CGGGGSSCCGGGHHHHHHHHHHHTTCCHH-HHHHHHHHTCTTHHHHHHHHCT
T ss_pred             cHHHHHhccccEEEcccccccccccCCCCCccCCCCCccchHHHHHHHHHHhCCCHH-HhhccccccchhhHHHHHhhCc
Confidence            9999999999999996542 1233345699999999999999999999999987642 11100  112456889999884


Q ss_pred             ---hhhhccChHHHHHH---hhccCccchHHHHHHHHhcCccCccCCCCCCCchhhhhhhccCCcccccCCeEEEEEEEE
Q 039337          783 ---DLLKTYLLDRHIKE---KKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRR  856 (1344)
Q Consensus       783 ---~kl~~ldl~~~~e~---~~~~~~~~tL~~I~~EL~~p~~D~R~~~~~p~~~e~f~~lTget~~~l~~G~iV~g~V~~  856 (1344)
                         ++|++|+|++|+++   +.+++|++||+||++||.+||+|+|.+|++|++++.|.|||||++++|++|++|+|+|++
T Consensus       833 ~~~~~l~~l~l~~~a~~l~~~~g~~K~~TL~dI~~EL~~P~rD~R~~f~~~~~~e~~~mltget~~~l~~G~iv~G~V~~  912 (1219)
T 3psi_A          833 DRRAKLESLNLESYAEELEKNTGLRKLNNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVER  912 (1219)
T ss_dssp             THHHHHTTSCHHHHHHHHHHHHSCCCHHHHHHHHHHHHSSSCCCSBCCCCBCHHHHHHHHTCCCTTTSCTTCEEEEEEEE
T ss_pred             cHHHHHhhCCHHHHHHHHhhhcCCcccchHHHHHHHHhccCCCCCcccCCCCHHHHHHhhccCcHhhCCCCCEEEEEEEE
Confidence               69999999999655   567899999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccccccccccCCCCCCCCc
Q 039337          857 VQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYY  936 (1344)
Q Consensus       857 V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~dl~~~~~~~~~~~D~y~  936 (1344)
                      |++||+||+|++|++||||+|+|++++++.+|.++|++||+|+|+|++||.++++|.||||.++++... ...     .|
T Consensus       913 V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~~~-~~~-----~~  986 (1219)
T 3psi_A          913 FWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQY-VPI-----SY  986 (1219)
T ss_dssp             ECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHHHC--------------
T ss_pred             EecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHHhcchh-ccc-----cc
Confidence            999999999999999999999999983388999999999999999999999999999999999998532 110     12


Q ss_pred             ccccccchHHHHHHHHH------HHHhhhccccccccCCCcccCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEe
Q 039337          937 HEERSSRQSEQEKARKE------KELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVY 1010 (1344)
Q Consensus       937 ~~~~~~~~~e~~~~~k~------~~~~~~~~~~RvI~HP~F~n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~ 1010 (1344)
                      +.+...|+.+++.++++      ++++++.+++|||+||+|||||+.||++||+++++|||||||||||.|||+|||||+
T Consensus       987 ~~~~~~~d~~~E~~d~~~~~~~~~k~~~~~~~~RvI~HP~F~n~~~~qAe~~L~~~~~Gd~vIRPSSkG~dhLtvTwKv~ 1066 (1219)
T 3psi_A          987 SKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVINHPYYFPFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLD 1066 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCcccchHHHHHHHHHHHHHhhhhhhhcccccccccCCCCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCceEEEEEEc
Confidence            11223455444433321      144567899999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEeecCCCCcCcccccccCceeeeCCccccchHHHHHHHHhhhHHHHHHHhhCcccccCCHHHHHHHHHHHHH
Q 039337         1011 DGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKA 1090 (1344)
Q Consensus      1011 d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~~y~DLDEii~~~V~pm~~~v~~i~~h~kf~~g~~~e~e~~L~~~~~ 1090 (1344)
                      |||||||||+|.+|+|     .++||++|+|++++|+||||||+|||+||+++|++|++|+||++|++++|++||++|++
T Consensus      1067 d~vyqHidV~E~~K~n-----~~slG~~L~I~~~~y~DLDEli~r~V~pm~~~v~e~~~h~kf~~g~~~eve~~L~~~k~ 1141 (1219)
T 3psi_A         1067 KDLFQHIDIQELEKEN-----PLALGKVLIVDNQKYNDLDQIIVEYLQNKVRLLNEMTSSEKFKSGTKKDVVKFIEDYSR 1141 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEEEecCCcc-----ccccCceEEECCceECCHHHHHHHHHHHHHHHHHHHHhChhhcCCCHHHHHHHHHHHHH
Confidence            9999999999999999     59999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcceEEEEeCCCCCcEEEEEEecCC--CCceeeEEEecCceEEcccccccHHHHHHHHHhhcCCCC
Q 039337         1091 EFPTRIVYGFGISHEHPGTFILTYIRST--NPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQ 1157 (1344)
Q Consensus      1091 ~np~~i~Y~f~~~~~~PG~f~L~~~~~~--~~~~e~i~v~p~gf~~~~~~~~~~~~L~~~fK~~~~d~~ 1157 (1344)
                      +||++|||+||+|++|||+|+|||+++.  +++||||+|+|+||+||+++|+||++||||||+||++..
T Consensus      1142 ~nP~ri~Y~f~~~~~~PG~F~L~f~~~~~~~~~~~~v~v~p~Gf~~r~~~f~~~~~L~~~FK~~~~~~~ 1210 (1219)
T 3psi_A         1142 VNPNKSVYYFSLNHDNPGWFYLMFKINANSKLYTWNVKLTNTGYFLVNYNYPSVIQLCNGFKTLLKSNS 1210 (1219)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             hCCCcceEEEEeCCCCCCEEEEEEecCCCCCceeeeEEEccCeEEEcCccCcCHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999964  588999999999999999999999999999999999844
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Back     alignment and structure
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Back     alignment and structure
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae} Back     alignment and structure
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Back     alignment and structure
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Back     alignment and structure
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 Back     alignment and structure
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Back     alignment and structure
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Back     alignment and structure
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Back     alignment and structure
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Back     alignment and structure
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Back     alignment and structure
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Back     alignment and structure
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Back     alignment and structure
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Back     alignment and structure
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Back     alignment and structure
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* Back     alignment and structure
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Back     alignment and structure
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Back     alignment and structure
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 Back     alignment and structure
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Back     alignment and structure
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A* Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ... Back     alignment and structure
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 Back     alignment and structure
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E Back     alignment and structure
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Back     alignment and structure
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Back     alignment and structure
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1 Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C Back     alignment and structure
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Back     alignment and structure
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Back     alignment and structure
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 Back     alignment and structure
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 Back     alignment and structure
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Back     alignment and structure
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* Back     alignment and structure
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Back     alignment and structure
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 Back     alignment and structure
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Back     alignment and structure
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Back     alignment and structure
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Back     alignment and structure
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Back     alignment and structure
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Back     alignment and structure
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Back     alignment and structure
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A Back     alignment and structure
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Back     alignment and structure
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe} Back     alignment and structure
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Back     alignment and structure
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Back     alignment and structure
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Back     alignment and structure
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A Back     alignment and structure
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Back     alignment and structure
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Back     alignment and structure
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Back     alignment and structure
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Back     alignment and structure
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Back     alignment and structure
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Back     alignment and structure
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Back     alignment and structure
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Back     alignment and structure
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Back     alignment and structure
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Back     alignment and structure
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Back     alignment and structure
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Back     alignment and structure
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Back     alignment and structure
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Back     alignment and structure
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 Back     alignment and structure
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Back     alignment and structure
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Back     alignment and structure
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Back     alignment and structure
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Back     alignment and structure
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A Back     alignment and structure
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Back     alignment and structure
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Back     alignment and structure
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Back     alignment and structure
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Back     alignment and structure
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Back     alignment and structure
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Back     alignment and structure
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli} Back     alignment and structure
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Back     alignment and structure
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A Back     alignment and structure
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Back     alignment and structure
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Back     alignment and structure
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Back     alignment and structure
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Back     alignment and structure
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 Back     alignment and structure
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Back     alignment and structure
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 Back     alignment and structure
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Back     alignment and structure
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Back     alignment and structure
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Back     alignment and structure
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Back     alignment and structure
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A Back     alignment and structure
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Back     alignment and structure
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Back     alignment and structure
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Back     alignment and structure
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Back     alignment and structure
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Back     alignment and structure
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A* Back     alignment and structure
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Back     alignment and structure
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Back     alignment and structure
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Back     alignment and structure
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Back     alignment and structure
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Back     alignment and structure
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Back     alignment and structure
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Back     alignment and structure
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Back     alignment and structure
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Back     alignment and structure
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Back     alignment and structure
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Back     alignment and structure
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Back     alignment and structure
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 Back     alignment and structure
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Back     alignment and structure
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6 Back     alignment and structure
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Back     alignment and structure
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Back     alignment and structure
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Back     alignment and structure
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Back     alignment and structure
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Back     alignment and structure
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Back     alignment and structure
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A Back     alignment and structure
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Back     alignment and structure
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Back     alignment and structure
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Back     alignment and structure
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Back     alignment and structure
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Back     alignment and structure
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Back     alignment and structure
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Back     alignment and structure
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Back     alignment and structure
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Back     alignment and structure
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A Back     alignment and structure
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Back     alignment and structure
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Back     alignment and structure
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Back     alignment and structure
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Back     alignment and structure
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Back     alignment and structure
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Back     alignment and structure
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Back     alignment and structure
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Back     alignment and structure
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Back     alignment and structure
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Back     alignment and structure
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae} Back     alignment and structure
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Back     alignment and structure
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Back     alignment and structure
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* Back     alignment and structure
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Back     alignment and structure
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Back     alignment and structure
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Back     alignment and structure
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 Back     alignment and structure
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Back     alignment and structure
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Back     alignment and structure
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A Back     alignment and structure
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli} Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Back     alignment and structure
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A Back     alignment and structure
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... Back     alignment and structure
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Back     alignment and structure
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Back     alignment and structure
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Back     alignment and structure
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Back     alignment and structure
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Back     alignment and structure
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Back     alignment and structure
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Back     alignment and structure
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Back     alignment and structure
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} Back     alignment and structure
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Back     alignment and structure
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Back     alignment and structure
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A Back     alignment and structure
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Back     alignment and structure
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y* Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1344
d3bzka3324 a.294.1.1 (A:1-324) Transcriptional accessory fact 7e-50
d3bzka5149 c.55.3.13 (A:325-473) Transcriptional accessory fa 2e-19
d3bzka190 a.60.2.6 (A:474-563) Transcriptional accessory fac 2e-16
d3bzka273 a.60.2.6 (A:564-636) Transcriptional accessory fac 2e-10
d1r1qa_97 d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA 2e-05
d2eyva1109 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo 4e-05
d2c9wa2103 d.93.1.1 (A:32-134) Suppressor of cytokine signali 1e-04
d2duya165 a.60.2.7 (A:11-75) Uncharacterized protein TTHA196 1e-04
d2shpa3108 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu 2e-04
d2izva2112 d.93.1.1 (A:274-385) Suppressor of cytokine signal 2e-04
d1sroa_76 b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc 3e-04
d1k9aa2101 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase ( 0.001
d1qada_107 d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a 0.001
d2nn6g188 b.40.4.5 (G:107-194) S1-domain of exosome componen 0.002
d1opka2101 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M 0.003
d1jwoa_97 d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho 0.003
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 324 Back     information, alignment and structure

class: All alpha proteins
fold: Tex N-terminal region-like
superfamily: Tex N-terminal region-like
family: Tex N-terminal region-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  177 bits (451), Expect = 7e-50
 Identities = 60/349 (17%), Positives = 121/349 (34%), Gaps = 83/349 (23%)

Query: 77  IPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKR 136
           +PFIA YRKE   SL  D  Q                      L  + +  +    L++R
Sbjct: 38  VPFIARYRKEVTGSL--DDTQ----------------------LRMLEERLRYLRELEER 73

Query: 137 KSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFP 196
           + A+        EE+              +L   +++ ++ A+T+  ++D+ L +     
Sbjct: 74  RGAI----LASIEEQ-------------GKLTPELARDIKLADTKTRLEDLYLPY----- 111

Query: 197 PGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKE 256
                       + KR TK     +AGL  +A                       +DP  
Sbjct: 112 ------------KQKRRTKGQIALEAGLGALADAL-------------------FDDPTL 140

Query: 257 TPEEMASNF--KCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTP 314
            PE  A+ F      F   +AVL+GA+++     + +  +   +R    + A ++    P
Sbjct: 141 VPESEAARFVDAEKGFADVKAVLEGAKYILMERFAEDATLLDKLRVFMKNEATLTARVVP 200

Query: 315 DGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSD 374
             +     F  +    +  ++PL+     + L I +   E +L  ++K+ E++   L   
Sbjct: 201 GKEQEGAKFSDY----FEHDEPLKSAPSHRALAIFRGRNEGVLSASLKVGEEAPGTLHPC 256

Query: 375 CKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRA 423
                   G+S   +  +     +++      L   +  +    +   A
Sbjct: 257 EVMIAERFGLSNQGRAADKWLAEVVRWTWKVKLYTHLETDLFGELRDGA 305
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 149 Back     information, alignment and structure
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 90 Back     information, alignment and structure
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 73 Back     information, alignment and structure
>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97 Back     information, alignment and structure
>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Length = 65 Back     information, alignment and structure
>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure
>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107 Back     information, alignment and structure
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 Back     information, alignment and structure
>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1344
d3bzka3324 Transcriptional accessory factor Tex {Pseudomonas 100.0
d3bzka5149 Transcriptional accessory factor Tex {Pseudomonas 100.0
d3bzka190 Transcriptional accessory factor Tex {Pseudomonas 99.89
d3bzka273 Transcriptional accessory factor Tex {Pseudomonas 99.65
d3bzka494 Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] 99.51
d1sroa_76 S1 RNA-binding domain of polyribonucleotide phosph 99.48
d1kl9a286 Eukaryotic initiation factor 2alpha, eIF2alpha, N- 99.42
d2ahob284 Eukaryotic initiation factor 2alpha, eIF2alpha, N- 99.38
d2ba0a183 S1-domain of exosome complex RNA-binding protein 1 99.33
d1wi5a_119 S1-domain of RRP5 protein homolog (PDCD11, KIAA018 99.3
d2je6i187 S1-domain of exosome complex RNA-binding protein 1 99.21
d2z0sa188 S1-domain of exosome complex RNA-binding protein 1 99.19
d1go3e1106 C-terminal domain of RNA polymerase II subunit RBP 99.18
d2edua191 KIF22, C-terminal domain {Human (Homo sapiens) [Ta 98.99
d2duya165 Uncharacterized protein TTHA1967 {Thermus thermoph 98.96
d1e3pa262 S1 RNA-binding domain of polyribonucleotide phosph 98.92
d2nn6h195 S1-domain of Ribosomal RNA-processing protein 4, R 98.88
d2ix0a387 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 98.85
d2axtu198 Photosystem II 12 kDa extrinsic protein PsbU {Ther 98.78
d1y14b191 C-terminal domain of RNA polymerase II subunit RBP 98.62
d2c35b194 C-terminal domain of RNA polymerase II subunit RBP 98.42
d2nn6g188 S1-domain of exosome component 3 (RRP40) {Human (H 98.34
d2c9wa2103 Suppressor of cytokine signaling 2, SOCS-2 {Human 98.33
d1r1qa_97 GRB2-related adaptor protein 2 (MONA, GRID) {Mouse 98.2
d1opka2101 Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 98.06
d1jwoa_97 Csk homologous kinase Chk {Human (Homo sapiens) [T 98.05
d2ja9a190 S1-domain of exosome component 3 (RRP40) {Saccharo 98.04
d1d4ta_104 The Xlp protein Sap {Human (Homo sapiens) [TaxId: 98.0
d1jyra_96 Growth factor receptor-bound protein 2 (GRB2) {Hum 97.96
d2nn6i1125 Exosome component 1, EXOSC1 {Human (Homo sapiens) 97.94
d1k9aa2101 Carboxyl-terminal src kinase (csk) {Human (Homo sa 97.89
d1lkka_105 p56-lck tyrosine kinase {Human (Homo sapiens) [Tax 97.88
d1rjaa_100 Tyrosine-protein kinase 6 (Breast tumor kinase, Br 97.88
d2shpa2109 Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T 97.79
d1mila_104 Shc adaptor protein {Human (Homo sapiens) [TaxId: 97.78
d2eyva1109 Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96 97.77
d1g83a2104 Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 97.77
d2fcia1105 Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 97.74
d1nrva_105 Growth factor receptor-bound protein 10, GRB10 {Hu 97.72
d2izva2112 Suppressor of cytokine signaling 4, SOCS-4 {Human 97.71
d1hh2p172 S1 domain of NusA {Thermotoga maritima [TaxId: 233 97.69
d1a81a1129 Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 97.68
d1qada_107 Phosphatidylinositol 3-kinase, p85-alpha subunit { 97.65
d2oq1a2124 Tyrosine-protein kinase zap-70 {Human (Homo sapien 97.64
d1i3za_103 Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus 97.63
d1blja_114 P55 Blk protein tyrosine kinase {Mouse (Mus muscul 97.63
d2qmsa1113 Growth factor receptor-bound protein 7 {Human (Hom 97.57
d1rpya_86 Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI 97.56
d2oq1a1130 Tyrosine-protein kinase zap-70 {Human (Homo sapien 97.56
d1qcfa2103 Hemopoetic cell kinase Hck {Human (Homo sapiens) [ 97.56
d1o48a_106 c-src tyrosine kinase {Human (Homo sapiens) [TaxId 97.54
d2cs0a1106 Hematopoietic SH2 domain containing protein HSH2D 97.52
d1fu6a_111 Phosphatidylinositol 3-kinase, p85-alpha subunit { 97.38
d1luia_108 Itk/tsk protein tyrosine kinase {Mouse (Mus muscul 97.23
d1a81a2125 Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 97.16
d1xa6a2141 Beta-chimaerin, N-terminal domain {Human (Homo sap 97.14
d2shpa3108 Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T 97.04
d2c9wa2103 Suppressor of cytokine signaling 2, SOCS-2 {Human 96.92
d2asba176 S1 domain of NusA {Mycobacterium tuberculosis [Tax 96.83
d1k9aa2101 Carboxyl-terminal src kinase (csk) {Human (Homo sa 96.63
d2shpa2109 Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T 96.6
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 96.6
d1r1qa_97 GRB2-related adaptor protein 2 (MONA, GRID) {Mouse 96.58
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 96.45
d2oq1a2124 Tyrosine-protein kinase zap-70 {Human (Homo sapien 96.44
d1jyra_96 Growth factor receptor-bound protein 2 (GRB2) {Hum 96.39
d1rjaa_100 Tyrosine-protein kinase 6 (Breast tumor kinase, Br 96.16
d1a81a2125 Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 96.11
d1a81a1129 Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 96.02
d2oq1a1130 Tyrosine-protein kinase zap-70 {Human (Homo sapien 95.96
d1mila_104 Shc adaptor protein {Human (Homo sapiens) [TaxId: 95.96
d1qada_107 Phosphatidylinositol 3-kinase, p85-alpha subunit { 95.94
d1jwoa_97 Csk homologous kinase Chk {Human (Homo sapiens) [T 95.92
d2fcia1105 Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 95.89
d1d4ta_104 The Xlp protein Sap {Human (Homo sapiens) [TaxId: 95.86
d2shpa3108 Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T 95.84
d2qmsa1113 Growth factor receptor-bound protein 7 {Human (Hom 95.59
d1opka2101 Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 95.51
d1nrva_105 Growth factor receptor-bound protein 10, GRB10 {Hu 95.51
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 95.47
d1smxa_87 S1-domain of Ribonuclease E {Escherichia coli [Tax 95.43
d2cs0a1106 Hematopoietic SH2 domain containing protein HSH2D 95.43
d2izva2112 Suppressor of cytokine signaling 4, SOCS-4 {Human 95.4
d1rpya_86 Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI 95.26
d2eyva1109 Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96 94.86
d1iv0a_98 Hypothetical protein, YqgF homologue {Thermus ther 94.75
d1nu0a_138 Hypothetical protein YqgF (RuvX) {Escherichia coli 94.51
d1o48a_106 c-src tyrosine kinase {Human (Homo sapiens) [TaxId 94.34
d1g83a2104 Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 94.06
d1lkka_105 p56-lck tyrosine kinase {Human (Homo sapiens) [Tax 94.02
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 93.72
d1i3za_103 Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus 93.68
d1blja_114 P55 Blk protein tyrosine kinase {Mouse (Mus muscul 93.64
d1qcfa2103 Hemopoetic cell kinase Hck {Human (Homo sapiens) [ 93.49
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 93.21
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 93.1
d1hjra_158 RuvC resolvase {Escherichia coli [TaxId: 562]} 92.71
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 92.49
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 92.41
d1vhxa_140 Hypothetical protein YrrK (RuvX) {Bacillus subtili 92.25
d2ch5a2117 N-acetylglucosamine kinase, NAGK {Human (Homo sapi 92.1
d1uura3131 STAT homologue {Dictyostelium discoideum [TaxId: 4 91.96
d1luia_108 Itk/tsk protein tyrosine kinase {Mouse (Mus muscul 91.67
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 90.46
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 89.85
d2i5ha1180 Hypothetical protein AF1531 {Archaeoglobus fulgidu 89.56
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 81.45
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: All alpha proteins
fold: Tex N-terminal region-like
superfamily: Tex N-terminal region-like
family: Tex N-terminal region-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.7e-63  Score=573.15  Aligned_cols=303  Identities=20%  Similarity=0.258  Sum_probs=279.0

Q ss_pred             CCHHHHHHHHHHhhhCCCccceeeecchhhhcccccccccccccCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 039337           58 ISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRK  137 (1344)
Q Consensus        58 ~~~~~I~~vL~l~~~~~~eVPFIarYRKE~~~~l~~~~~~~e~~~~~~~~~~~~~~l~~~~dLw~I~~ld~k~~~L~~RK  137 (1344)
                      +.+.+|.+||.||++ |+|||||||||||+|++|+++                        +||.|.+++++|++|++||
T Consensus        20 i~~~qv~~~i~Ll~e-g~TVPFIARYRKE~tg~Lde~------------------------~lr~i~~~~~~~~~L~~rk   74 (324)
T d3bzka3          20 VQPQQVAAAVALLDE-GSTVPFIARYRKEVTGSLDDT------------------------QLRMLEERLRYLRELEERR   74 (324)
T ss_dssp             CCHHHHHHHHHHHHH-TCCHHHHHHHCHHHHTSCCHH------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhC-CCCccccchhcchhhCCCCHH------------------------HHHHHHHHHHHHHHHHHHH
Confidence            788999999999987 899999999999999999743                        8999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhhhhHhhhhcccccCCCCCCCCCCccCccCCCCcchHH
Q 039337          138 SALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYS  217 (1344)
Q Consensus       138 ~~l~~~~~k~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~a~t~eel~Di~~~~~l~y~~~~~~~~~~~~kr~~r~t~y~  217 (1344)
                      +.|+++|++                 ++.|++++.+.|..|+|+++|+|||.||                 ||||+|+|+
T Consensus        75 ~~il~~i~~-----------------~~~Lt~~L~~~i~~a~t~~eLEdly~Pf-----------------K~kr~t~a~  120 (324)
T d3bzka3          75 GAILASIEE-----------------QGKLTPELARDIKLADTKTRLEDLYLPY-----------------KQKRRTKGQ  120 (324)
T ss_dssp             HHHHHHHHH-----------------TTCCCHHHHHHHHHCCSHHHHHHHHGGG-----------------SCCCSCHHH
T ss_pred             HHHHHHHHH-----------------hccCCHHHHHHHHcCCCHHHHHHHHHHh-----------------ccccCcHHH
Confidence            999999985                 4678888999999999999999999998                 899999999


Q ss_pred             HHHHcChHHHHHHhccChHHHhhhhhhcccCCCCCCCCCCHHHHHHhhhhh--cCCCHHHHHHHHHHHHHHHhcCChhHH
Q 039337          218 SCSKAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCA--MFNSSQAVLQGARHMAAVEISCEPCVR  295 (1344)
Q Consensus       218 ~a~~~GL~~la~~fgls~~~f~~nl~~~~~~~~~~~~~~~p~~~A~~~i~~--~~~t~e~vl~ga~~ilA~eis~dp~vR  295 (1344)
                      +|+++||+|||+.|.                   .++...|++.|.+|+++  +|+|+++||+||+||+|++||+||.+|
T Consensus       121 ~A~e~GLeplA~~l~-------------------~~~~~~p~~~a~~fv~~~~~~~~~e~al~Ga~~IlAe~is~d~~vR  181 (324)
T d3bzka3         121 IALEAGLGALADALF-------------------DDPTLVPESEAARFVDAEKGFADVKAVLEGAKYILMERFAEDATLL  181 (324)
T ss_dssp             HHHHTTTHHHHHHHH-------------------HCTTSCHHHHHHTTCBGGGTBCSHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHH-------------------hCCCCCHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            999999999999986                   44566899999999965  599999999999999999999999999


Q ss_pred             HHHHHHhhceEEEEEEeCCCCCcccccccccccccccccccCcCCCchHHHHHHhhhccccEEEEEecChhhhhhHHHHH
Q 039337          296 KYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDC  375 (1344)
Q Consensus       296 ~~vR~~~~~~a~Ist~~T~kg~~~id~~h~y~~~Kyl~~kpv~~l~~~q~L~i~raE~egll~v~i~~~~~~~~~~~~~l  375 (1344)
                      +++|+.|+++|+|+|++|++|.+.++.||+||+|+    +||+++++||||||+|||+||+|+|+|+++++....+...+
T Consensus       182 ~~lR~~~~~~g~i~s~~~~~~~~e~~ky~~Y~df~----e~v~~i~~Hr~LAi~RGE~EglL~Vki~~~~~~~~~~~~~~  257 (324)
T d3bzka3         182 DKLRVFMKNEATLTARVVPGKEQEGAKFSDYFEHD----EPLKSAPSHRALAIFRGRNEGVLSASLKVGEEAPGTLHPCE  257 (324)
T ss_dssp             HHHHHHHHHHCEEEEEECTTCTTTTGGGGGGTEEE----EEGGGCCHHHHHHHHHHHHTTSEEEEEECC--CCSCCCHHH
T ss_pred             HHHHHHHhccceEEEeccCCCcccccchhhHHhhh----chHhhCChHHHHHHHHhhhcCCceEEeecCccccchhhHHH
Confidence            99999999999999999999999999999999985    89999999999999999999999999999998665555555


Q ss_pred             HhhhccCCCcchhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 039337          376 KEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVG  442 (1344)
Q Consensus       376 ~~~~~~d~~s~~~~~wn~~r~~~l~~a~~~~L~P~~~revr~~L~~~Ae~~~i~~~~~nL~~~L~~~  442 (1344)
                      ...|.++.++..+..||+++++++++||+++|+|+|++|+|++|+++|++.+|.+|++||+++||++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~ai~da~krlL~Psiereir~~Lk~~Ae~~aI~vF~~NL~~LLl~a  324 (324)
T d3bzka3         258 VMIAERFGLSNQGRAADKWLAEVVRWTWKVKLYTHLETDLFGELRDGAEDEAISVFARNLHDLLLAA  324 (324)
T ss_dssp             HHHHHHTTCCCCSCTTHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhccccCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5556666666667899999999999999999999999999999999999999999999999999986
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure