Citrus Sinensis ID: 039340

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MPSKLKKAIGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPAANGRSALMLPATPIKDPGSSSDRVGLSSSLAIVPATNAFSVAPTFSAQNPSQGGTTFENKDDPFGPCLDISADKHVAAESVDQNLLWQEQQLWLQNQNKIIAKHKA
ccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHccccccEEEEEHccccHHHHcEEEEEcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
MPSKLKKAIGAVKDQTSISLAKVSNANASNVEVLILKAtrhdeaplderYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFqdgdpyfpREVAHAMKRGQKFlnlsnfrddsnsspwdyTAFVRTFALYLDERLDcfitgklhkrfsnrgrrngriersyapvcemkpiMLLDRISNWQRLLDRaigskptgaaknnsLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYdlckgtgvgrtseypsvQKVSEELIETLQEFLKdqasfpaangrsalmlpatpikdpgsssdrvglssslaivpatnafsvaptfsaqnpsqggttfenkddpfgpcldisadkhvaaesvDQNLLWQEQQLWLQNQNKIIAKHKA
mpsklkkaigavkdqtsislakvsnanasnVEVLILKAtrhdeapldERYVDEILQLIASSKVYAVACAQViskrigktrnWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNlsnfrddsnsspWDYTAFVRTFALYLDERLDCfitgklhkrfsnrgrrngriersyapvcemkpIMLLDRISNWQRLLDRAIGSKptgaaknnslVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPAANGRSALMLPATPIKDPGSSSDRVGLSSSLAIVPATNAFSVAPTFSAQNPSQGGTTFENKDDPFGPCLDISADKHVAAESVDQNLLWQEQQLWLQNQNKIIAKHKA
MPSKLKKAIGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDIsdalallldsffHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPAANGRSALMLPATPIKDPgsssdrvglssslAIVPATNAFSVAPTFSAQNPSQGGTTFENKDDPFGPCLDISADKHVAAESVDqnllwqeqqlwlqnqnKIIAKHKA
**************************NASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRD***SSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEY*********LIETLQEF****************************************IV*******************************GPCLDISADKHVAAESVDQNLLWQEQQLWLQNQNKII*****
****LKK*IGAVKDQTSIS**********NVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHK********************EMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQE********************************************************************************************************************
*************DQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPAANGRSALMLPATPIKD*********LSSSLAIVPATNAFSVAPTFSAQNPSQGGTTFENKDDPFGPCLDISADKHVAAESVDQNLLWQEQQLWLQNQNKIIAKHKA
***KLKKAIGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFS****************CEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQA*******************************************************************FGPCLDISADKHVAAESVDQNLLWQEQQLWLQNQNKIIAKHK*
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MPSKLKKAIGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPAANGRSALMLPATPIKDPGSSSDRVGLSSSLAIVPATNAFSVAPTFSAQNPSQGGTTFENKDDPFGPCLDISADKHVAAESVDQNLLWQEQQLWLQNQNKIIAKHKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query419 2.2.26 [Sep-21-2011]
Q9ZVN6 653 Clathrin coat assembly pr yes no 0.751 0.482 0.689 1e-135
Q8LF20 653 Putative clathrin assembl no no 0.737 0.473 0.411 5e-80
Q8S9J8 635 Probable clathrin assembl no no 0.737 0.486 0.420 9e-79
Q8GX47 611 Putative clathrin assembl no no 0.739 0.507 0.420 3e-76
Q9SA65 599 Putative clathrin assembl no no 0.737 0.515 0.421 8e-75
Q8LBH2 571 Putative clathrin assembl no no 0.715 0.525 0.351 4e-55
P94017 692 Putative clathrin assembl no no 0.866 0.524 0.326 1e-54
Q9LVD8 591 Putative clathrin assembl no no 0.720 0.510 0.351 3e-53
Q8VYT2 601 Putative clathrin assembl no no 0.718 0.500 0.339 4e-51
Q9LHS0 544 Putative clathrin assembl no no 0.692 0.533 0.324 1e-47
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function desciption
 Score =  480 bits (1235), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/338 (68%), Positives = 279/338 (82%), Gaps = 23/338 (6%)

Query: 1   MPSKLKKAIGAVKDQTSISLAKVSNA-----NASNVEVLILKATRHDE-APLDERYVDEI 54
           MPSKLKKAIGAVKDQTSISLAKV+N      + + +EV ILKAT HDE  P+D+R V EI
Sbjct: 1   MPSKLKKAIGAVKDQTSISLAKVANGATGGGDLTTLEVAILKATSHDEEVPIDDRLVTEI 60

Query: 55  LQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRG 114
           L +I+S K +A +CA  I +RIG+TRNWIVALKSL+LVLRIFQDGDPYFPREV HAMKRG
Sbjct: 61  LGIISSKKSHAASCAAAIGRRIGRTRNWIVALKSLVLVLRIFQDGDPYFPREVLHAMKRG 120

Query: 115 QKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIE-- 172
            K LNLS+FRDDSNS PWD+TAFVRTFALYLDERLDCF+TGKL +R++NR  + GRI   
Sbjct: 121 AKILNLSSFRDDSNSCPWDFTAFVRTFALYLDERLDCFLTGKLQRRYTNR-EQTGRISTN 179

Query: 173 -------------RSYAP-VCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVS 218
                        +S+ P V +MKP+MLLD+I+ WQ+LLDRAI ++PTG AK N LV++S
Sbjct: 180 STTRSRFNPKAGIKSHEPAVRDMKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMS 239

Query: 219 LYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKG 278
           LYA++QESFDLYRDISD LALLLDSFFHLQY +C++AFQACV+ASKQFEEL++FYDL K 
Sbjct: 240 LYAVMQESFDLYRDISDGLALLLDSFFHLQYQSCINAFQACVRASKQFEELNAFYDLSKS 299

Query: 279 TGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPAANG 316
            G+GRTSEYPS+QK+S EL+ETLQEFLKDQ+SFPA++G
Sbjct: 300 IGIGRTSEYPSIQKISLELLETLQEFLKDQSSFPASSG 337
Adaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Binding of AP180 to clathrin triskelia promotes their assembly into 70-90 nm coats cages.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
255568729 634 clathrin assembly protein, putative [Ric 0.799 0.528 0.769 1e-151
224068929 599 predicted protein [Populus trichocarpa] 0.804 0.562 0.748 1e-148
224068933 623 predicted protein [Populus trichocarpa] 0.804 0.540 0.748 1e-147
224129038 569 predicted protein [Populus trichocarpa] 0.804 0.592 0.742 1e-144
225447139 591 PREDICTED: clathrin coat assembly protei 0.828 0.587 0.724 1e-141
449444965 573 PREDICTED: clathrin coat assembly protei 0.780 0.570 0.721 1e-136
18390470 653 clathrin coat assembly protein AP180 [Ar 0.751 0.482 0.689 1e-133
357462273 931 Adhesive plaque matrix protein [Medicago 0.737 0.331 0.704 1e-132
297848758 643 hypothetical protein ARALYDRAFT_887680 [ 0.751 0.489 0.681 1e-132
356545689 730 PREDICTED: clathrin coat assembly protei 0.797 0.457 0.663 1e-130
>gi|255568729|ref|XP_002525336.1| clathrin assembly protein, putative [Ricinus communis] gi|223535395|gb|EEF37069.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/343 (76%), Positives = 294/343 (85%), Gaps = 8/343 (2%)

Query: 1   MPSKLKKAIGAVKDQTSISLAKV--SNANASNVEVLILKATRHDEAPLDERYVDEILQLI 58
           MPSKL+KAIGAVKDQTSISLAKV  +N + +N+EV+ILKATRHDEAP++ERYV EIL  I
Sbjct: 1   MPSKLRKAIGAVKDQTSISLAKVYTNNPSKTNLEVVILKATRHDEAPIEERYVKEILNQI 60

Query: 59  ASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFL 118
           +S K  A +CAQ I +RIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV HAMKRG K L
Sbjct: 61  SSGKGQAASCAQAIGRRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVLHAMKRGAKIL 120

Query: 119 NLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRN--GRIERSYA 176
           NLS FRDDS+SSPWDYTAFVRTFALYLDERLDCF+TGKL +RF+N+ RRN   R      
Sbjct: 121 NLSTFRDDSHSSPWDYTAFVRTFALYLDERLDCFLTGKLQRRFTNKNRRNIHHRNRTGTD 180

Query: 177 PVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDA 236
           PVCEMKPIMLLDRIS WQ+LLDRA+ ++PTGAAK N LV +SLYA+VQESFDLYRDISD 
Sbjct: 181 PVCEMKPIMLLDRISFWQKLLDRAVATRPTGAAKANKLVHISLYAVVQESFDLYRDISDG 240

Query: 237 LALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEE 296
           LALLLDSFFHLQY +CVSAF+ CVKA++QFEELSSFYDLCK  GVGRTSEYPSVQK+SEE
Sbjct: 241 LALLLDSFFHLQYQSCVSAFECCVKATRQFEELSSFYDLCKSLGVGRTSEYPSVQKISEE 300

Query: 297 LIETLQEFLKDQASFPAANGRSA---LMLPATPIKDPGSSSDR 336
           L+ETLQEFLKDQASF A NGRS    L+LP+ P KD  SSS R
Sbjct: 301 LVETLQEFLKDQASF-ACNGRSPPSHLLLPSPPAKDAASSSQR 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224068929|ref|XP_002302859.1| predicted protein [Populus trichocarpa] gi|222844585|gb|EEE82132.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068933|ref|XP_002302860.1| predicted protein [Populus trichocarpa] gi|222844586|gb|EEE82133.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224129038|ref|XP_002320485.1| predicted protein [Populus trichocarpa] gi|222861258|gb|EEE98800.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447139|ref|XP_002271237.1| PREDICTED: clathrin coat assembly protein AP180 [Vitis vinifera] gi|297739212|emb|CBI28863.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444965|ref|XP_004140244.1| PREDICTED: clathrin coat assembly protein AP180-like [Cucumis sativus] gi|449481225|ref|XP_004156119.1| PREDICTED: clathrin coat assembly protein AP180-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18390470|ref|NP_563726.1| clathrin coat assembly protein AP180 [Arabidopsis thaliana] gi|46396061|sp|Q9ZVN6.1|AP180_ARATH RecName: Full=Clathrin coat assembly protein AP180; Short=At-AP180; AltName: Full=Clathrin coat-associated protein AP180 gi|4056423|gb|AAC97997.1| Similar to clathrin assembly protein gb|X68878 (AP180) from Rattus norvegicus. EST gb|W43552 comes from this gene [Arabidopsis thaliana] gi|26450013|dbj|BAC42127.1| putative clathrin protein [Arabidopsis thaliana] gi|28827746|gb|AAO50717.1| putative clathrin [Arabidopsis thaliana] gi|332189659|gb|AEE27780.1| clathrin coat assembly protein AP180 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357462273|ref|XP_003601418.1| Adhesive plaque matrix protein [Medicago truncatula] gi|355490466|gb|AES71669.1| Adhesive plaque matrix protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297848758|ref|XP_002892260.1| hypothetical protein ARALYDRAFT_887680 [Arabidopsis lyrata subsp. lyrata] gi|297338102|gb|EFH68519.1| hypothetical protein ARALYDRAFT_887680 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356545689|ref|XP_003541269.1| PREDICTED: clathrin coat assembly protein AP180-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
TAIR|locus:2205558 653 AT1G05020 [Arabidopsis thalian 0.751 0.482 0.656 4.6e-112
TAIR|locus:2040115 653 AT2G25430 [Arabidopsis thalian 0.357 0.229 0.526 2.1e-75
TAIR|locus:2132382 611 AT4G02650 [Arabidopsis thalian 0.389 0.266 0.515 8.6e-71
TAIR|locus:2007524 599 AT1G03050 [Arabidopsis thalian 0.735 0.514 0.416 5.4e-67
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.871 0.527 0.315 6.8e-51
TAIR|locus:2049587 571 AT2G01600 [Arabidopsis thalian 0.715 0.525 0.342 8.7e-51
TAIR|locus:2165615 591 AT5G57200 [Arabidopsis thalian 0.720 0.510 0.345 5.4e-47
TAIR|locus:2120780 601 AT4G25940 [Arabidopsis thalian 0.723 0.504 0.315 2.7e-45
TAIR|locus:505006543 635 AT4G32285 [Arabidopsis thalian 0.400 0.264 0.48 5.8e-42
TAIR|locus:2182432 544 AT5G35200 [Arabidopsis thalian 0.696 0.536 0.315 2.2e-41
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
 Identities = 222/338 (65%), Positives = 268/338 (79%)

Query:     1 MPSKLKKAIGAVKDQTSISLAKVSNA-----NASNVEVLILKATRHDE-APLDERYVDEI 54
             MPSKLKKAIGAVKDQTSISLAKV+N      + + +EV ILKAT HDE  P+D+R V EI
Sbjct:     1 MPSKLKKAIGAVKDQTSISLAKVANGATGGGDLTTLEVAILKATSHDEEVPIDDRLVTEI 60

Query:    55 LQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRG 114
             L +I+S K +A +CA  I +RIG+TRNWIVALKSL+LVLRIFQDGDPYFPREV HAMKRG
Sbjct:    61 LGIISSKKSHAASCAAAIGRRIGRTRNWIVALKSLVLVLRIFQDGDPYFPREVLHAMKRG 120

Query:   115 QKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIE-- 172
              K LNLS+FRDDSNS PWD+TAFVRTFALYLDERLDCF+TGKL +R++NR  + GRI   
Sbjct:   121 AKILNLSSFRDDSNSCPWDFTAFVRTFALYLDERLDCFLTGKLQRRYTNR-EQTGRISTN 179

Query:   173 -------------RSYAP-VCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVS 218
                          +S+ P V +MKP+MLLD+I+ WQ+LLDRAI ++PTG AK N LV++S
Sbjct:   180 STTRSRFNPKAGIKSHEPAVRDMKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMS 239

Query:   219 LYAIVQESFDLYRDIXXXXXXXXXXXXHLQYHNCVSAFQACVKASKQFEELSSFYDLCKG 278
             LYA++QESFDLYRDI            HLQY +C++AFQACV+ASKQFEEL++FYDL K 
Sbjct:   240 LYAVMQESFDLYRDISDGLALLLDSFFHLQYQSCINAFQACVRASKQFEELNAFYDLSKS 299

Query:   279 TGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPAANG 316
              G+GRTSEYPS+QK+S EL+ETLQEFLKDQ+SFPA++G
Sbjct:   300 IGIGRTSEYPSIQKISLELLETLQEFLKDQSSFPASSG 337
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025947001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (397 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
pfam07651278 pfam07651, ANTH, ANTH domain 4e-92
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 5e-39
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 3e-34
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 0.002
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  278 bits (714), Expect = 4e-92
 Identities = 101/277 (36%), Positives = 149/277 (53%), Gaps = 2/277 (0%)

Query: 31  VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLM 90
           +EV ++KAT HDE P  +++V EIL    SS     A    +S+R+  TRNW+VALK+L+
Sbjct: 4   LEVAVVKATSHDEVPPKKKHVREILVGT-SSPAKVAALFWALSRRLPLTRNWVVALKALI 62

Query: 91  LVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLD 150
           LV ++ ++G P   +E+  A +R    L +S+F DDS S  WDY AF+R +A YLDERLD
Sbjct: 63  LVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYLDERLD 121

Query: 151 CFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAK 210
                     F      + R          M    LLD I   Q+LLD  +  KPTG A 
Sbjct: 122 FHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKPTGNAL 181

Query: 211 NNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELS 270
            N  +  +L  +++ESF LY  I++ +  LL+ FF +   +  +A     +   QFE L 
Sbjct: 182 TNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQFERLK 241

Query: 271 SFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKD 307
            FY++CK  G  R+ E P +  +   L++ L+E L+D
Sbjct: 242 EFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 419
KOG0251491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.98
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.27
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.19
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 98.82
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.02
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.82
KOG2057499 consensus Predicted equilibrative nucleoside trans 95.83
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.58
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.55
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.54
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.48
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 94.95
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 94.91
cd03561133 VHS VHS domain family; The VHS domain is present i 94.59
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.4e-71  Score=570.88  Aligned_cols=295  Identities=41%  Similarity=0.677  Sum_probs=271.4

Q ss_pred             HHHHHhhhhhhhhhhhhcCCCCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHH
Q 039340            7 KAIGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVAL   86 (419)
Q Consensus         7 ~a~g~~kd~~s~~~A~~~~~~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiVal   86 (419)
                      +|+|++||++|+|+|++++ ...++++||+|||+|++.|||+|||+.|+.+|+.+++++++|+.+|.+||++||||+||+
T Consensus         1 ~~~gaiKD~~s~~~a~v~~-~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAl   79 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVAS-AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVAL   79 (491)
T ss_pred             CCccccchhhhhHHHHhhh-hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehH
Confidence            4799999999999999976 679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHHHhHHhcCCccccccccc
Q 039340           87 KSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGR  166 (419)
Q Consensus        87 K~LivlHrLlreG~p~~~~e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl~f~~~g~l~~~f~~~~~  166 (419)
                      |+|||||+||++|++.|.+++.++    ++.|+|++|+|++++.+|+|++|||+|++||+||+.||+..+++...+..+ 
T Consensus        80 KsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~-  154 (491)
T KOG0251|consen   80 KALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG-  154 (491)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc-
Confidence            999999999999999999887643    368999999999988899999999999999999999999877654322111 


Q ss_pred             cCcccccCCCccccCC-HHHHHHHHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039340          167 RNGRIERSYAPVCEMK-PIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFF  245 (419)
Q Consensus       167 ~~~~~~~~~~~~~~l~-~~~LLd~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ff  245 (419)
                         ..   ....+++. .+.+|+.++.||.|++++++|+|.+.+++|.||++||.+||+|||+||+++|+||++|||+||
T Consensus       155 ---~~---k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekff  228 (491)
T KOG0251|consen  155 ---KE---KTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFF  228 (491)
T ss_pred             ---cc---ccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               01   12344444 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccCCCCCCCCHHHHHHHHHhhcccCCCCC
Q 039340          246 HLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPA  313 (419)
Q Consensus       246 em~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l~~~~~i~iP~L~~~P~~ll~~LEe~l~d~~~~~~  313 (419)
                      +|++.||.++|+||+||.+|+++|.+||++||++|+.+..+||+|+++|.+++++|||||++.+....
T Consensus       229 em~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~  296 (491)
T KOG0251|consen  229 EMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKA  296 (491)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999986554

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 6e-06
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 6e-06
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 7e-06
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 8e-06
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 111/278 (39%), Gaps = 14/278 (5%)
Query: 28  ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALK 87
            S V   + KAT H+     ++++D ++Q      V     A  + +R   + +W+V  K
Sbjct: 26  GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFK 84
Query: 88  SLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDE 147
           SL+    +   G+  F + +A    R   F NLSNF D S    +D + F+R ++ YL+E
Sbjct: 85  SLITTHHLMVYGNERFIQYLA---SRNTLF-NLSNFLDKSGLQGYDMSTFIRRYSRYLNE 140
Query: 148 RLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTG 207
           +   +   ++   F+   R    + R+      M    LL  +   Q  +D  +      
Sbjct: 141 KAVSY--RQVAFDFTKVKRGADGVMRT------MNTEKLLKTVPIIQNQMDALLDFNVNS 192
Query: 208 AAKNNSLVQVSLYAIVQESFDLYRDIXXXXXXXXXXXXHLQYHNCVSAFQACVKASKQFE 267
               N ++  +   + +++  L+                ++ + C        K   +  
Sbjct: 193 NELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMT 252
Query: 268 ELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFL 305
            +S F  + +  G+ R  + P + +    L++ L++ L
Sbjct: 253 RISEFLKVAEQVGIDR-GDIPDLSQAPSSLLDALEQHL 289
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 5e-70
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 7e-69
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 8e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 1e-07
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 5e-07
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 3e-06
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 1e-04
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 2e-04
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 2e-04
3g2s_A149 C-terminal fragment of sortilin-related receptor; 3e-04
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 4e-04
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 4e-04
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  221 bits (564), Expect = 5e-70
 Identities = 53/282 (18%), Positives = 113/282 (40%), Gaps = 16/282 (5%)

Query: 2   PSKLKKAIGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASS 61
           P  +  +  ++ D+ + +   V     S V   + KAT H+     ++++D ++Q     
Sbjct: 3   PIGIHMSGQSLTDRITAAQHSV---TGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEM 59

Query: 62  KVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLS 121
            V     A  + +R   + +W+V  KSL+    +   G+  F       +       NLS
Sbjct: 60  NVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERF----IQYLASRNTLFNLS 114

Query: 122 NFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEM 181
           NF D S    +D + F+R ++ YL+E+   +   ++   F+   R    + R       M
Sbjct: 115 NFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY--RQVAFDFTKVKRGADGVMR------TM 166

Query: 182 KPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLL 241
               LL  +   Q  +D  +          N ++  +   + +++  L+   ++ +  LL
Sbjct: 167 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLL 226

Query: 242 DSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGR 283
           + +F ++ + C        K   +   +S F  + +  G+ R
Sbjct: 227 EKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR 268
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.39
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.36
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 98.96
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 98.96
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.15
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 95.98
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.73
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.71
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.67
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.56
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 95.51
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.3
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.26
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.51
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=3.9e-72  Score=554.30  Aligned_cols=283  Identities=18%  Similarity=0.334  Sum_probs=239.5

Q ss_pred             chhHHHHHHHhh-hhhhhhhhhhcCCCCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCC
Q 039340            2 PSKLKKAIGAVK-DQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTR   80 (419)
Q Consensus         2 ~~~lr~a~g~~k-d~~s~~~A~~~~~~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~   80 (419)
                      +++||+++|++| |+++.           ++++||+|||+|+++|||+|||++||.+||++++++++|+|+|.+|+ .++
T Consensus         5 ~~~~~~~~~a~k~~~~~~-----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~-~~~   72 (299)
T 1hx8_A            5 GQTINDRLLAARHSLAGQ-----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS-QNA   72 (299)
T ss_dssp             -----------------C-----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH-TCS
T ss_pred             hHHHHHHHHHHhhccchh-----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc-cCC
Confidence            478999999999 88774           46789999999999999999999999999999999999999999995 578


Q ss_pred             chHHHHHHHHHHHHHHhcCCCcchHHHHHHHhcCCccccccCCcCCCC-----------CCCCchhHHHHHHHHHHHHHH
Q 039340           81 NWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSN-----------SSPWDYTAFVRTFALYLDERL  149 (419)
Q Consensus        81 ~wiValK~LivlHrLlreG~p~~~~e~~~~~~~~~~~l~L~~f~d~s~-----------~~~~~ys~fIR~Ya~YL~eRl  149 (419)
                      ||+|+||+|||+|+|||||||+|++++.    ++.++|++++|+|.++           +.+|+|+.|||+|++||++|+
T Consensus        73 ~w~va~K~LivlH~llreG~~~~~~~l~----~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~  148 (299)
T 1hx8_A           73 NWVVVYKSLITTHHLMAYGNERFMQYLA----SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKS  148 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCHHHHHHHH----HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHHH----hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999988764    3467999999999764           245689999999999999996


Q ss_pred             HhHHhcCCccccccccccCcccccCCCccccCCHHHHHHHHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHH
Q 039340          150 DCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDL  229 (419)
Q Consensus       150 ~f~~~g~l~~~f~~~~~~~~~~~~~~~~~~~l~~~~LLd~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~L  229 (419)
                      .+|+..+++  |+..     +.+.+.+++++|++++||++++.||+||+++++|++.+.+.+|+|+++||++||+||++|
T Consensus       149 ~~f~~~~~d--~~~~-----~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~l  221 (299)
T 1hx8_A          149 LSYRAMAFD--FCKV-----KRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRL  221 (299)
T ss_dssp             HHHHHHSSC--GGGC----------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCC--cccc-----ccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence            666554432  3221     112234678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccCCCCCCCCHHHHHHHHHhhccc
Q 039340          230 YRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQ  308 (419)
Q Consensus       230 Y~~i~~gli~LLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l~~~~~i~iP~L~~~P~~ll~~LEe~l~d~  308 (419)
                      |+++|+||++|||+||+|++.||++||+||+||.+|+++|++||++|+++||++ ++||+|+++|++|+++|||||++.
T Consensus       222 Y~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~~  299 (299)
T 1hx8_A          222 FACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLATL  299 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999987 899999999999999999999873
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 419
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 3e-43
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 1e-42
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 3e-31
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 6e-31
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 3e-19
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 2e-05
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 2e-04
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 6e-04
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 0.001
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  145 bits (368), Expect = 3e-43
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 180 EMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALAL 239
            M    LL  +   Q  LD  +         +N ++ +S   + ++   L+   +D +  
Sbjct: 6   SMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIIN 65

Query: 240 LLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIE 299
           LL+ +F +   +   A     K   + + +  F  + +  G+ +  + P + K    L++
Sbjct: 66  LLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLD 124

Query: 300 TLQEFLKD 307
            L++ L  
Sbjct: 125 ALEQHLAT 132
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.81
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.78
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.67
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.63
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.75
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 94.22
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2e-38  Score=275.84  Aligned_cols=131  Identities=17%  Similarity=0.350  Sum_probs=127.9

Q ss_pred             CccccCCHHHHHHHHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHH
Q 039340          176 APVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSA  255 (419)
Q Consensus       176 ~~~~~l~~~~LLd~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~a  255 (419)
                      ..+++|++++||++++.+|+|++++++|+|.|.+++|+++++||++||+||++||..+|+||++|||+||+|+++||++|
T Consensus         2 ~~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~a   81 (133)
T d1hx8a1           2 GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDA   81 (133)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred             chhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCccCccCCCCCCCCHHHHHHHHHhhcc
Q 039340          256 FQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKD  307 (419)
Q Consensus       256 leiykrf~~Q~~~L~~Fy~~ck~l~~~~~i~iP~L~~~P~~ll~~LEe~l~d  307 (419)
                      |+||+||.+|+++|.+||++||++|+++ .+||+|+++|++++++|||||++
T Consensus        82 l~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          82 LDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999987 69999999999999999999986
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure