Citrus Sinensis ID: 039404

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK
Secondary Structure (PSIPRED)
ccEEEEEEEEEEEcccccccEEEEEEEEcccEEEEEEEcccccEEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEcccccHHcEEEEEEcccccccHHEcccccEEEEEEEccccEEEEEEcccccc
Coil and Loop (DISEMBL)
vaysrhivqiypcnggdevRQHLEIdahvggvndiafshpnkqlyvitcgddktikvwdatngvk
Flexible Loop (DISEMBL)
VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVwdatngvk
Low Complexity Region (SEG)
VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK
Disordered region (IsUnstruct)
****RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA*****
Disordered Region (DISOPRED)
*AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN***
Disordered Region (DISEMBL)
VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK
Disordered Region (DISPRO)
VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
Q94AI7	1131	Protein TOPLESS OS=Arabid	yes	no	1.0	0.057	0.815	4e-27
Q0WV90	1120	Topless-related protein 1	no	no	1.0	0.058	0.815	8e-27
Q27GK7	1135	Topless-related protein 4	no	no	1.0	0.057	0.692	9e-23
Q84JM4	1108	Topless-related protein 3	no	no	0.938	0.055	0.622	6e-20
Q9LRZ0	1131	Topless-related protein 2	no	no	0.892	0.051	0.644	4e-19
Q59WJ4	543	Polyadenylation factor su	N/A	no	0.569	0.068	0.564	0.0001

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 59/65 (90%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQ+Y  +GG+++RQHLEIDAHVGGVNDI+FS PNKQL VITCGDDKTIKVWDA
Sbjct: 434 VAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDA 493

Query: 61  TNGVK 65
             GVK
Sbjct: 494 ATGVK 498

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score =  119 bits (297), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 58/65 (89%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQ+Y  +GG+++RQHLEIDAHVGGVNDIAFS PNKQL V TCGDDKTIKVWDA
Sbjct: 434 VAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDA 493

Query: 61  TNGVK 65
             GVK
Sbjct: 494 ATGVK 498

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score =  105 bits (262), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 54/65 (83%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYS+HIV IY  +GG+++R HLEIDAH G VND+AFS PN+QL V+TCG+DKTIKVWDA
Sbjct: 436 VAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDA 495

Query: 61  TNGVK 65
             G K
Sbjct: 496 VTGNK 500

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 53/61 (86%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VA+++H++Q+Y  +G +++RQH EIDAHVG VND+AF++PN+QL VITCGDDK IKVWD 
Sbjct: 424 VAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKVWDV 483

Query: 61  T 61
           +
Sbjct: 484 S 484

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
           V++++H++ +Y   G D +RQHLEIDAHVG VND+AF+HPNKQ+ V+TCGDDK IKVWD
Sbjct: 426 VSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD 483

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q59WJ4|PFS2_CANAL Polyadenylation factor subunit 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PFS2 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 25  IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           I AH  GV DIAFS PN   + +TCGDD  IK+W+  NG
Sbjct: 214 ISAHANGVRDIAFS-PNDSKF-LTCGDDSAIKIWNFNNG 250

Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
24461849	1127	CTV.2 [Citrus trifoliata]	1.0	0.057	0.923	2e-29
225463556	1138	PREDICTED: protein TOPLESS [Vitis vinife	1.0	0.057	0.876	3e-28
357455305	1149	WD repeat-containing protein, putative [	1.0	0.056	0.876	6e-28
357455303	1112	WD repeat-containing protein, putative [	1.0	0.058	0.876	6e-28
357455301	1134	WD repeat-containing protein, putative [	1.0	0.057	0.876	6e-28
414865875	1114	TPA: hypothetical protein ZEAMMB73_62478	1.0	0.058	0.846	8e-28
223944163	1128	unknown [Zea mays] gi|414865876|tpg|DAA4	1.0	0.057	0.846	8e-28
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	1.0	0.057	0.861	9e-28
356522325	1081	PREDICTED: topless-related protein 1-lik	1.0	0.060	0.861	9e-28
242036291	1125	hypothetical protein SORBIDRAFT_01g04080	1.0	0.057	0.830	2e-27

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/65 (92%), Positives = 61/65 (93%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  +GGDEVRQHLEIDAHVGGVNDIAFSHPNKQL VITCGDDKTIKVWDA
Sbjct: 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 484

Query: 61  TNGVK 65
           TNG K
Sbjct: 485 TNGAK 489

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/65 (87%), Positives = 60/65 (92%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  +GGD+VRQHLEIDAH GGVND+AFSHPNKQL VITCGDDKTIKVWDA
Sbjct: 430 VAYSRHIVQIYSYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQLCVITCGDDKTIKVWDA 489

Query: 61  TNGVK 65
           TNG K
Sbjct: 490 TNGTK 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/65 (87%), Positives = 60/65 (92%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  +GGDEVRQHLEIDAHVGGVND+AFSHPNKQL VITCGDDKTIKVWDA
Sbjct: 450 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDA 509

Query: 61  TNGVK 65
             G+K
Sbjct: 510 ATGLK 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/65 (87%), Positives = 60/65 (92%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  +GGDEVRQHLEIDAHVGGVND+AFSHPNKQL VITCGDDKTIKVWDA
Sbjct: 413 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDA 472

Query: 61  TNGVK 65
             G+K
Sbjct: 473 ATGLK 477

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/65 (87%), Positives = 60/65 (92%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  +GGDEVRQHLEIDAHVGGVND+AFSHPNKQL VITCGDDKTIKVWDA
Sbjct: 435 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDA 494

Query: 61  TNGVK 65
             G+K
Sbjct: 495 ATGLK 499

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414865875|tpg|DAA44432.1| TPA: hypothetical protein ZEAMMB73_624785 [Zea mays]

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/65 (84%), Positives = 61/65 (93%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  NGGD++RQHLEIDAHVGGVNDIAF+HPNKQL +ITCGDDKTIKVW+A
Sbjct: 415 VAYSRHIVQIYSYNGGDDIRQHLEIDAHVGGVNDIAFAHPNKQLCIITCGDDKTIKVWEA 474

Query: 61  TNGVK 65
           T+G K
Sbjct: 475 TSGAK 479

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223944163|gb|ACN26165.1| unknown [Zea mays] gi|414865876|tpg|DAA44433.1| TPA: hypothetical protein ZEAMMB73_624785 [Zea mays] gi|414865877|tpg|DAA44434.1| TPA: hypothetical protein ZEAMMB73_624785 [Zea mays]

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/65 (84%), Positives = 61/65 (93%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  NGGD++RQHLEIDAHVGGVNDIAF+HPNKQL +ITCGDDKTIKVW+A
Sbjct: 429 VAYSRHIVQIYSYNGGDDIRQHLEIDAHVGGVNDIAFAHPNKQLCIITCGDDKTIKVWEA 488

Query: 61  TNGVK 65
           T+G K
Sbjct: 489 TSGAK 493

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/65 (86%), Positives = 60/65 (92%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  +GGDE+RQHLEIDAHVGGVND+AFSHPNKQL VITCGDDKTIKVWDA
Sbjct: 434 VAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDA 493

Query: 61  TNGVK 65
            +G K
Sbjct: 494 ASGAK 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522325|ref|XP_003529797.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/65 (86%), Positives = 60/65 (92%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  +GGDE+RQHLEIDAHVGGVND+AFSHPNKQL VITCGDDKTIKVWDA
Sbjct: 434 VAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDA 493

Query: 61  TNGVK 65
            +G K
Sbjct: 494 ASGAK 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242036291|ref|XP_002465540.1| hypothetical protein SORBIDRAFT_01g040800 [Sorghum bicolor] gi|241919394|gb|EER92538.1| hypothetical protein SORBIDRAFT_01g040800 [Sorghum bicolor]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/65 (83%), Positives = 61/65 (93%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           VAYSRHIVQIY  NGGD++RQHLEIDAH+GGVNDIAF+HPNKQL +ITCGDDKTIKVW+A
Sbjct: 429 VAYSRHIVQIYSYNGGDDLRQHLEIDAHIGGVNDIAFAHPNKQLCIITCGDDKTIKVWEA 488

Query: 61  TNGVK 65
           T+G K
Sbjct: 489 TSGTK 493

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	1.0	0.057	0.815	6.3e-24
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	1.0	0.058	0.815	1e-23
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.892	0.051	0.644	3.4e-17
CGD|CAL0000650	543	orf19.2307 [Candida albicans (	0.569	0.068	0.564	9.1e-06
UNIPROTKB|Q59WJ4	543	PFS2 "Polyadenylation factor s	0.569	0.068	0.564	9.1e-06
UNIPROTKB|Q1JP79	370	ARPC1A "Actin-related protein	0.892	0.156	0.377	0.00028
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.830	0.170	0.310	0.00046
MGI|MGI:1289332	386	Tssc1 "tumor suppressing subtr	0.553	0.093	0.486	0.00062
UNIPROTKB|E9PF58	279	ARPC1A "Actin-related protein	0.892	0.207	0.360	0.00078
UNIPROTKB|Q5ZJI7	370	ARPC1A "Uncharacterized protei	0.938	0.164	0.343	0.00097

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 6.3e-24, P = 6.3e-24
 Identities = 53/65 (81%), Positives = 59/65 (90%)

Query:     1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
             VAYSRHIVQ+Y  +GG+++RQHLEIDAHVGGVNDI+FS PNKQL VITCGDDKTIKVWDA
Sbjct:   434 VAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDA 493

Query:    61 TNGVK 65
               GVK
Sbjct:   494 ATGVK 498

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 53/65 (81%), Positives = 58/65 (89%)

Query:     1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
             VAYSRHIVQ+Y  +GG+++RQHLEIDAHVGGVNDIAFS PNKQL V TCGDDKTIKVWDA
Sbjct:   434 VAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDA 493

Query:    61 TNGVK 65
               GVK
Sbjct:   494 ATGVK 498

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query:     1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
             V++++H++ +Y   G D +RQHLEIDAHVG VND+AF+HPNKQ+ V+TCGDDK IKVWD
Sbjct:   426 VSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD 483

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

CGD|CAL0000650 orf19.2307 [Candida albicans (taxid:5476)]

 Score = 113 (44.8 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 22/39 (56%), Positives = 26/39 (66%)

Query:    25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
             I AH  GV DIAFS PN   + +TCGDD  IK+W+  NG
Sbjct:   214 ISAHANGVRDIAFS-PNDSKF-LTCGDDSAIKIWNFNNG 250

GO:0003674 "molecular_function" evidence=ND

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:2000045 "regulation of G1/S transition of mitotic cell cycle" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

UNIPROTKB|Q59WJ4 PFS2 "Polyadenylation factor subunit 2" [Candida albicans SC5314 (taxid:237561)]

 Score = 113 (44.8 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 22/39 (56%), Positives = 26/39 (66%)

Query:    25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
             I AH  GV DIAFS PN   + +TCGDD  IK+W+  NG
Sbjct:   214 ISAHANGVRDIAFS-PNDSKF-LTCGDDSAIKIWNFNNG 250

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q1JP79 ARPC1A "Actin-related protein 2/3 complex subunit 1A" [Bos taurus (taxid:9913)]

 Score = 97 (39.2 bits), Expect = 0.00028, P = 0.00028
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query:     4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
             + H V IY  NGG  V+ H E+  H G +  I ++ P K   ++TCG D+   VW   +G
Sbjct:    28 NNHEVHIYKKNGGQWVKAH-ELKEHNGHITGIDWA-P-KSDRIVTCGADRNAYVWSQKDG 84

Query:    64 V 64
             V
Sbjct:    85 V 85

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00046, P = 0.00046
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query:     8 VQIYPCNG-GDEVRQHL-EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
             ++ Y  N   D + + + E   H  G++D+AFS   +  ++++  DDKT+K+WD   G
Sbjct:    48 IRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDAR--FIVSASDDKTLKLWDVETG 103

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

MGI|MGI:1289332 Tssc1 "tumor suppressing subtransferable candidate 1" [Mus musculus (taxid:10090)]

 Score = 94 (38.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query:    26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
             +AH   V D+ F+ PNKQ Y+ +CGDD  +K WD  N
Sbjct:   225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E9PF58 ARPC1A "Actin-related protein 2/3 complex subunit 1A" [Homo sapiens (taxid:9606)]

 Score = 91 (37.1 bits), Expect = 0.00078, P = 0.00078
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query:     4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
             + H V IY  NG   V+ H E+  H G +  I ++ P K   ++TCG D+   VW   +G
Sbjct:    28 NNHEVHIYKKNGSQWVKAH-ELKEHNGHITGIDWA-P-KSDRIVTCGADRNAYVWSQKDG 84

Query:    64 V 64
             V
Sbjct:    85 V 85

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|Q5ZJI7 ARPC1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 92 (37.4 bits), Expect = 0.00097, P = 0.00097
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query:     1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
             ++ + H V IY  NG   V+ H E+  H G +  I ++ P K   ++TCG D+   VW  
Sbjct:    25 ISPNNHEVHIYKKNGSQWVKAH-ELKEHNGHITGIDWA-P-KSDRIVTCGADRNAYVWSQ 81

Query:    61 TNGV 64
              +GV
Sbjct:    82 KDGV 85


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.139   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       65        65   0.00091  102 3  11 22  0.45    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  109 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.43u 0.16s 7.59t   Elapsed:  00:00:00
  Total cpu time:  7.43u 0.16s 7.59t   Elapsed:  00:00:00
  Start:  Sat May 11 00:24:58 2013   End:  Sat May 11 00:24:58 2013

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AI7	TPL_ARATH	No assigned EC number	0.8153	1.0	0.0574	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003228001 SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (1101 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	65
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
           +  H G V  +AFS       + +  DD T++VWD
Sbjct: 6  TLKGHTGPVTSVAFSPDGN--LLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 3e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
           +  H G V  +AFS   K  Y+ +  DD TIK+WD
Sbjct: 7  TLKGHTGPVTSVAFSPDGK--YLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.4 bits (95), Expect = 9e-06
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 25  IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           +  H   VN +AFS      +V +   D TIK+WD   G
Sbjct: 131 LRGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLRTG 167

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 25  IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           +  H G VN +AFS   ++L  ++   D TIK+WD + G
Sbjct: 173 LTGHTGEVNSVAFSPDGEKL--LSSSSDGTIKLWDLSTG 209

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 6   HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
             ++++    G+ VR    +  H   V+ +AFS   +   + +   DKTIKVWD   G
Sbjct: 73  KTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETG 125

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
             +  H GGV  +AFS   K   + T   D TIKVWD   G
Sbjct: 2  RRTLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETG 41

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 37.8 bits (86), Expect = 8e-05
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 25  IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           +  H   V+ +AFS P+  L + +   D TI++WD + G
Sbjct: 194 LAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTG 231

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
          H G V D+A S     L   +   DKTI++WD   G
Sbjct: 50 HTGPVRDVAASADGTYL--ASGSSDKTIRLWDLETG 83

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 20  RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
                +  H   V  +A+S P+ +  + +   D TI++WD
Sbjct: 252 ECVQTLSGHTNSVTSLAWS-PDGK-RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 25  IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64
           +  H  GVN +AFS       + +  +D TI+VWD   G 
Sbjct: 215 LRGHENGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
           +A S     +   +     +    ++ H   V  +AFS P+ +L       D TIK+WD 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDL 185

Query: 61  TNG 63
             G
Sbjct: 186 RTG 188

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.64
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.61
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.59
KOG0266	456	consensus WD40 repeat-containing protein [General	99.5
PTZ00421	493	coronin; Provisional	99.49
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.47
KOG0266	456	consensus WD40 repeat-containing protein [General	99.46
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.45
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.44
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.43
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.42
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.42
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.42
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.41
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.41
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.39
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.38
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.38
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.38
PTZ00421	493	coronin; Provisional	99.36
KOG0286	343	consensus G-protein beta subunit [General function	99.36
KOG1273	405	consensus WD40 repeat protein [General function pr	99.36
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.36
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.36
KOG0639	705	consensus Transducin-like enhancer of split protei	99.36
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.35
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.35
KOG0289	506	consensus mRNA splicing factor [General function p	99.35
PTZ00420	568	coronin; Provisional	99.33
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.33
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.33
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.32
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.32
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.32
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.32
PLN00181	793	protein SPA1-RELATED; Provisional	99.32
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.31
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.31
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.29
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.28
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.27
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.27
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.26
KOG0286	343	consensus G-protein beta subunit [General function	99.26
PTZ00420	568	coronin; Provisional	99.26
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.26
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.26
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.24
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.24
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.22
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.21
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.2
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.2
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.2
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.18
KOG1539	910	consensus WD repeat protein [General function pred	99.16
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.15
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.15
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.14
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.14
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.13
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.13
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.13
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.12
KOG0649	325	consensus WD40 repeat protein [General function pr	99.11
KOG0643	327	consensus Translation initiation factor 3, subunit	99.1
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.1
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.08
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.07
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.07
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.07
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.07
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.06
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.06
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.06
KOG0296	399	consensus Angio-associated migratory cell protein	99.06
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.06
KOG0296	399	consensus Angio-associated migratory cell protein	99.05
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.04
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.03
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.01
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.01
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.99
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.98
KOG0645	312	consensus WD40 repeat protein [General function pr	98.98
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.97
KOG0645	312	consensus WD40 repeat protein [General function pr	98.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	98.96
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.92
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.92
PLN00181	793	protein SPA1-RELATED; Provisional	98.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.9
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.89
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.88
KOG1188	376	consensus WD40 repeat protein [General function pr	98.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.86
KOG0267	825	consensus Microtubule severing protein katanin p80	98.85
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.81
KOG2048	691	consensus WD40 repeat protein [General function pr	98.81
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.81
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.8
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.79
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.79
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.77
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.76
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.76
KOG1274	933	consensus WD40 repeat protein [General function pr	98.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.75
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.74
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.74
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.73
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.73
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.73
KOG0267	825	consensus Microtubule severing protein katanin p80	98.72
KOG0646	476	consensus WD40 repeat protein [General function pr	98.69
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.69
KOG4328	498	consensus WD40 protein [Function unknown]	98.68
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.68
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.67
KOG2096	420	consensus WD40 repeat protein [General function pr	98.66
KOG0646	476	consensus WD40 repeat protein [General function pr	98.66
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.65
KOG1188	376	consensus WD40 repeat protein [General function pr	98.62
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.59
KOG0643	327	consensus Translation initiation factor 3, subunit	98.59
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.59
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.58
KOG2096	420	consensus WD40 repeat protein [General function pr	98.56
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.56
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.55
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.53
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.53
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.52
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.51
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.5
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.5
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.49
KOG4328	498	consensus WD40 protein [Function unknown]	98.48
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.48
KOG0289	506	consensus mRNA splicing factor [General function p	98.47
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.46
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.45
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.45
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.45
KOG0641	350	consensus WD40 repeat protein [General function pr	98.42
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.41
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.4
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.4
KOG0641	350	consensus WD40 repeat protein [General function pr	98.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.39
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.38
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.37
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.36
KOG1539	910	consensus WD repeat protein [General function pred	98.35
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.35
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.32
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.32
KOG1274	933	consensus WD40 repeat protein [General function pr	98.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.24
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.21
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.2
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.19
KOG1963	792	consensus WD40 repeat protein [General function pr	98.18
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.18
KOG2048	691	consensus WD40 repeat protein [General function pr	98.18
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.17
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.17
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.17
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.14
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.13
KOG0639	705	consensus Transducin-like enhancer of split protei	98.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.11
KOG2695	425	consensus WD40 repeat protein [General function pr	98.1
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.09
KOG1310	758	consensus WD40 repeat protein [General function pr	98.03
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.02
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.0
COG2319	466	FOG: WD40 repeat [General function prediction only	97.98
COG2319	466	FOG: WD40 repeat [General function prediction only	97.98
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.97
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.94
KOG1310	758	consensus WD40 repeat protein [General function pr	97.93
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.92
KOG2110	391	consensus Uncharacterized conserved protein, conta	97.91
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.85
KOG2055	514	consensus WD40 repeat protein [General function pr	97.82
KOG2139	445	consensus WD40 repeat protein [General function pr	97.82
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.8
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.79
KOG1334	559	consensus WD40 repeat protein [General function pr	97.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.72
PRK01742	429	tolB translocation protein TolB; Provisional	97.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.68
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.59
KOG1963	792	consensus WD40 repeat protein [General function pr	97.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.56
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.52
KOG2321	703	consensus WD40 repeat protein [General function pr	97.52
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	97.51
KOG2055	514	consensus WD40 repeat protein [General function pr	97.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.49
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	97.47
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.46
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	97.44
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.4
KOG2321	703	consensus WD40 repeat protein [General function pr	97.4
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.39
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.38
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.38
KOG0649	325	consensus WD40 repeat protein [General function pr	97.37
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.31
KOG4227	609	consensus WD40 repeat protein [General function pr	97.31
KOG2695	425	consensus WD40 repeat protein [General function pr	97.26
KOG1273	405	consensus WD40 repeat protein [General function pr	97.25
KOG2139	445	consensus WD40 repeat protein [General function pr	97.2
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.18
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.17
PRK05137	435	tolB translocation protein TolB; Provisional	97.13
PRK05137	435	tolB translocation protein TolB; Provisional	97.1
KOG4227	609	consensus WD40 repeat protein [General function pr	97.1
KOG4547	541	consensus WD40 repeat-containing protein [General	97.1
KOG0771	398	consensus Prolactin regulatory element-binding pro	97.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.02
PRK11028	330	6-phosphogluconolactonase; Provisional	97.0
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.99
PRK04922	433	tolB translocation protein TolB; Provisional	96.9
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.89
KOG4547	541	consensus WD40 repeat-containing protein [General	96.88
KOG2315	566	consensus Predicted translation initiation factor	96.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.82
PRK01742	429	tolB translocation protein TolB; Provisional	96.81
PRK11028	330	6-phosphogluconolactonase; Provisional	96.8
COG4946	668	Uncharacterized protein related to the periplasmic	96.79
KOG1334	559	consensus WD40 repeat protein [General function pr	96.76
PRK04922	433	tolB translocation protein TolB; Provisional	96.72
KOG3621	726	consensus WD40 repeat-containing protein [General	96.64
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.52
PRK03629	429	tolB translocation protein TolB; Provisional	96.48
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.43
PRK02889	427	tolB translocation protein TolB; Provisional	96.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.37
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.22
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	96.16
PRK02889	427	tolB translocation protein TolB; Provisional	96.11
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	95.98
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.89
PRK03629	429	tolB translocation protein TolB; Provisional	95.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.66
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	95.61
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.56
PRK00178	430	tolB translocation protein TolB; Provisional	95.53
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.45
PRK00178	430	tolB translocation protein TolB; Provisional	95.3
PRK04792	448	tolB translocation protein TolB; Provisional	94.95
KOG2395	644	consensus Protein involved in vacuole import and d	94.71
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	94.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.46
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	94.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	93.97
KOG1912	1062	consensus WD40 repeat protein [General function pr	93.97
PRK04792	448	tolB translocation protein TolB; Provisional	93.76
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	93.76
PRK01029	428	tolB translocation protein TolB; Provisional	93.63
COG4946	668	Uncharacterized protein related to the periplasmic	93.38
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.25
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	92.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.86
KOG2444	238	consensus WD40 repeat protein [General function pr	92.76
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.44
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	91.67
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	91.44
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.1
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.71
KOG2395	644	consensus Protein involved in vacuole import and d	90.69
PRK01029	428	tolB translocation protein TolB; Provisional	90.4
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	90.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	90.16
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	89.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.61
KOG2314	698	consensus Translation initiation factor 3, subunit	89.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.16
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.95
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.68
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	88.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.25
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	87.81
KOG2314	698	consensus Translation initiation factor 3, subunit	87.36
PRK04043	419	tolB translocation protein TolB; Provisional	87.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	87.11
PRK02888	635	nitrous-oxide reductase; Validated	86.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.73
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	86.36
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	85.98
KOG1008	783	consensus Uncharacterized conserved protein, conta	85.77
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	85.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.15
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	85.12
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	84.69
KOG3621	726	consensus WD40 repeat-containing protein [General	84.69
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.64
KOG1912	1062	consensus WD40 repeat protein [General function pr	84.57
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.44
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.44
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	83.23
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	83.06
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	82.81
KOG2315	566	consensus Predicted translation initiation factor	82.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	82.66
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	82.04
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	81.55
COG5167	776	VID27 Protein involved in vacuole import and degra	81.23
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	80.14

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=9.3e-16  Score=78.98  Aligned_cols=58  Identities=19%  Similarity=0.330  Sum_probs=51.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+-|.++++||+.+...   ...+++|...|.+++|+|++.  .|++++.|+.|++||.++|+
T Consensus       133 GsGD~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  133 GSGDTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             cCCCceEEeeccCCCCc---ceeecCCccEEEEEEECCCcc--hhhccccCCeEEEecCCCCC
Confidence            67789999999987543   337899999999999999999  99999999999999998875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=8.2e-15  Score=74.92  Aligned_cols=58  Identities=31%  Similarity=0.548  Sum_probs=52.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|++|++||++++..+-   .+.+|...|+.++|+|.|+  +|+++..|+++++||+++++
T Consensus       310 ~SrDktIk~wdv~tg~cL~---tL~ghdnwVr~~af~p~Gk--yi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTGMCLF---TLVGHDNWVRGVAFSPGGK--YILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             ecccceEEEEeccCCeEEE---EEecccceeeeeEEcCCCe--EEEEEecCCcEEEEEeccce
Confidence            6789999999999875443   7899999999999999999  99999999999999998764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.59  E-value=2.1e-14  Score=78.14  Aligned_cols=59  Identities=29%  Similarity=0.524  Sum_probs=53.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.|.++++||+.++..   ++.|.||.++|.+++|+|++.  +|++++.|+.|.+||+.+|+
T Consensus       552 TGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  552 TGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             cCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCc
Confidence            478899999999998754   447899999999999999999  99999999999999998875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.50  E-value=2.8e-13  Score=71.84  Aligned_cols=59  Identities=22%  Similarity=0.459  Sum_probs=50.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.++++||+....  ..++.+++|...|.+++|+|.+.  .+++|+.|++|++||+++++
T Consensus       221 ~s~D~tiriwd~~~~~--~~~~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  221 GSDDKTLRIWDLKDDG--RNLKTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ecCCceEEEeeccCCC--eEEEEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCe
Confidence            5779999999994331  22347889999999999999997  99999999999999999864

>PTZ00421 coronin; Provisional

Probab=99.49  E-value=5e-13  Score=71.49  Aligned_cols=58  Identities=19%  Similarity=0.379  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++...   ..+.+|...|.+++|+|++.  .+++++.|+.|++||+++++
T Consensus       144 gs~DgtVrIWDl~tg~~~---~~l~~h~~~V~sla~spdG~--lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        144 AGADMVVNVWDVERGKAV---EVIKCHSDQITSLEWNLDGS--LLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             EeCCCEEEEEECCCCeEE---EEEcCCCCceEEEEEECCCC--EEEEecCCCEEEEEECCCCc
Confidence            567999999999876433   35778999999999999999  99999999999999998764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.47  E-value=5.4e-13  Score=66.62  Aligned_cols=57  Identities=25%  Similarity=0.410  Sum_probs=50.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++|+++++||+.++.   ..+.|.+|+..|.+++|++++.  .+.+++.|.+|.+|+....
T Consensus        81 ~swD~~lrlWDl~~g~---~t~~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATGE---STRRFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             ccccceEEEEEecCCc---EEEEEEecCCceEEEEecCCCc--eeecCCCcceeeeeeeccc
Confidence            6789999999998864   3347999999999999999999  8999999999999998643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=8.9e-13  Score=69.96  Aligned_cols=58  Identities=28%  Similarity=0.546  Sum_probs=51.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|++|++||+.++...   ..+.+|.+.|.+++|++++.  ++++++.|+.+++||+.++.
T Consensus       264 gs~D~tvriWd~~~~~~~---~~l~~hs~~is~~~f~~d~~--~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  264 GSDDGTVRIWDVRTGECV---RKLKGHSDGISGLAFSPDGN--LLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             ecCCCcEEEEeccCCeEE---EeeeccCCceEEEEECCCCC--EEEEcCCCccEEEEECCCCc
Confidence            678999999999885433   37899999999999999999  99999999999999998875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.45  E-value=5.7e-13  Score=66.54  Aligned_cols=58  Identities=21%  Similarity=0.290  Sum_probs=51.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +++|+++++||+.+-+..   ..+.+|++.++.+.++|++.  +.++|+.|+.+.+||+..++
T Consensus       168 ~s~DktvKvWnl~~~~l~---~~~~gh~~~v~t~~vSpDGs--lcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQLR---TTFIGHSGYVNTVTVSPDGS--LCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             ccCCceEEEEccCCcchh---hccccccccEEEEEECCCCC--EEecCCCCceEEEEEccCCc
Confidence            678999999999874433   36789999999999999999  99999999999999998875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.44  E-value=9.8e-13  Score=67.76  Aligned_cols=59  Identities=19%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.|..+++||+.+....   ..+.+|+.+|..+.+.|-++  .+++|+.|++|++||++.|+
T Consensus       252 t~grDst~RvWDiRtr~~V---~~l~GH~~~V~~V~~~~~dp--qvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  252 TGGRDSTIRVWDIRTRASV---HVLSGHTNPVASVMCQPTDP--QVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             ecCCcceEEEeeecccceE---EEecCCCCcceeEEeecCCC--ceEEecCCceEEEeeeccCc
Confidence            3678999999999886533   37899999999999999888  79999999999999999875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.43  E-value=9.4e-13  Score=67.96  Aligned_cols=60  Identities=22%  Similarity=0.368  Sum_probs=49.8

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .|+.|++|+|||+..++....+ ..+.|.+.|+.++|+...+  +|++|+.||++.+||+++-
T Consensus       275 ScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~  334 (440)
T KOG0302|consen  275 SCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQF  334 (440)
T ss_pred             eeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhc
Confidence            3788999999999876422211 3478999999999998888  9999999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.42  E-value=9.6e-14  Score=72.09  Aligned_cols=59  Identities=20%  Similarity=0.379  Sum_probs=51.7

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.||++++|++.+..   ++..+.+|..+|..++|+|.+.  +|.|++.|.+.++||++++.
T Consensus       236 t~s~Dgtvklw~~~~e~---~l~~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~  294 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQET---PLQDLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKS  294 (459)
T ss_pred             eeccCCceeeeccCCCc---chhhhhcchhhheeeeecCCCc--eeeecccccchhhcccccch
Confidence            36789999999998643   3346889999999999999999  99999999999999998864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.42  E-value=9.4e-13  Score=68.52  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=49.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|..-+|||+.++...   +.+.+|..+|..|+|+|.+.  .++||+.|+++++||++..
T Consensus       321 GGlD~~~RvWDlRtgr~i---m~L~gH~k~I~~V~fsPNGy--~lATgs~Dnt~kVWDLR~r  377 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCI---MFLAGHIKEILSVAFSPNGY--HLATGSSDNTCKVWDLRMR  377 (459)
T ss_pred             cCccchhheeecccCcEE---EEecccccceeeEeECCCce--EEeecCCCCcEEEeeeccc
Confidence            567777889999987543   36889999999999999999  9999999999999999754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.42  E-value=2.1e-12  Score=64.13  Aligned_cols=59  Identities=25%  Similarity=0.411  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|..++.||..++.....  ..++|.++|.|+.|+|++.  ..++++.||+|++|....++
T Consensus       242 Gged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  242 GGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGE--LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             cCcceEEEEEeccCCceeee--cccCCCCceEEEEECCCCc--eeeccCCCceEEEEEecCCC
Confidence            66788899999998765542  1378999999999999999  99999999999999887654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.41  E-value=5.2e-12  Score=46.53  Aligned_cols=36  Identities=31%  Similarity=0.587  Sum_probs=33.4

Q ss_pred             eEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404           22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus        22 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      +..+.+|.+.|.+++|+|++.  ++++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~--~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGN--FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSS--EEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccc--cceeeCCCCEEEEEC
Confidence            457889999999999999998  999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.41  E-value=2.2e-12  Score=65.75  Aligned_cols=59  Identities=22%  Similarity=0.383  Sum_probs=53.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|.+|++|++++...........+|++.|.+++|++++.  .+++++.|.++.+|++..
T Consensus       154 ~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  154 ASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecCh
Confidence            67899999999999876665566789999999999999999  999999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.39  E-value=1.1e-12  Score=68.24  Aligned_cols=58  Identities=14%  Similarity=0.310  Sum_probs=50.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|+|||..-.+   ..+.+.+|.-.|.+++|+|...  ++++++.|..|++||.++|+
T Consensus       198 ~SdDg~ikiWdf~~~k---ee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  198 CSDDGTIKIWDFRMPK---EERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             ecCCCeEEEEeccCCc---hhheeccCCCCcceeccCCccc--eeEEccCCceeEeecCCCcc
Confidence            6789999999986433   2235789999999999999999  99999999999999999885

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=4.5e-12  Score=62.97  Aligned_cols=58  Identities=17%  Similarity=0.331  Sum_probs=50.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++|++||+|+........   .+.+|+..|...+|+|..++ ++++++.|+++++||++..
T Consensus       123 sSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  123 SSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             eccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCC
Confidence            5889999999987654444   69999999999999998776 8999999999999999753

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.38  E-value=1.8e-12  Score=67.72  Aligned_cols=57  Identities=19%  Similarity=0.369  Sum_probs=50.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|+.|+.|+||+..+++...   .+.||...|++++|+|..+. .+++++.|++|++|...
T Consensus       457 SGSED~kvyIWhr~sgkll~---~LsGHs~~vNcVswNP~~p~-m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  457 SGSEDSKVYIWHRISGKLLA---VLSGHSKTVNCVSWNPADPE-MFASASDDGTIRIWGPS  513 (519)
T ss_pred             ecCCCceEEEEEccCCceeE---eecCCcceeeEEecCCCCHH-HhhccCCCCeEEEecCC
Confidence            37889999999998876555   78999999999999998886 89999999999999765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.38  E-value=7.3e-12  Score=61.83  Aligned_cols=57  Identities=23%  Similarity=0.446  Sum_probs=50.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|..+.+||..+++...   .+.+|.+.|+.++|+.+..  .+++++.|.++++||.++.
T Consensus        77 ~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~  133 (307)
T KOG0316|consen   77 CGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSR  133 (307)
T ss_pred             CCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccC
Confidence            5668899999999987554   7999999999999998888  9999999999999999865

>PTZ00421 coronin; Provisional

Probab=99.36  E-value=8.4e-12  Score=66.91  Aligned_cols=62  Identities=16%  Similarity=0.275  Sum_probs=49.5

Q ss_pred             ccccCeEEEEECCCCce----EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.....    ..+...+.+|...|.+++|+|.... ++++++.|+.|++||+.+++
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~  159 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGK  159 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCe
Confidence            67899999999875421    1234467889999999999998643 89999999999999998763

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.36  E-value=4.5e-12  Score=63.83  Aligned_cols=58  Identities=17%  Similarity=0.298  Sum_probs=51.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|..-++||+..+...   +.|.+|.+.|+.++|+|.+.  -+++|+.|++.+++|++..+
T Consensus       205 g~cD~~aklWD~R~~~c~---qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCV---QTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             cccccceeeeeccCccee---EeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCc
Confidence            678999999999876433   37999999999999999999  89999999999999998753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=2.6e-12  Score=65.42  Aligned_cols=59  Identities=25%  Similarity=0.394  Sum_probs=51.0

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|..||.+.|||+.+...   -+.+.+|..+|.+++|++++.  .|++++.|..+.+||+..|.
T Consensus        40 vGc~nG~vvI~D~~T~~i---ar~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   40 VGCANGRVVIYDFDTFRI---ARMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             eeccCCcEEEEEccccch---hhhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCC
Confidence            367899999999987432   235789999999999999999  99999999999999998874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.36  E-value=1.5e-12  Score=67.13  Aligned_cols=57  Identities=19%  Similarity=0.476  Sum_probs=47.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK   65 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~   65 (65)
                      |..|++|+|||..+.....   .+.+|++.|.|++|  +..  .+++|++|.++++||+.+|++
T Consensus       213 GlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqy--d~r--viisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  213 GLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQY--DER--VIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             ccccCceEEeccccHHHHH---hhhcCCCcEEeeec--cce--EEEecCCCceEEEEeccCCch
Confidence            6679999999987643333   57899999999998  566  899999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.36  E-value=8.9e-12  Score=61.85  Aligned_cols=60  Identities=28%  Similarity=0.460  Sum_probs=52.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +++.|.+++||..++.  +.....+.+|...+..++|+.++.  +|++++.|+++++|++..++
T Consensus       232 t~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~--YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGE--YLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             eecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCcc--EEEecCCCCceeecccccCc
Confidence            3678999999999875  333446889999999999999999  99999999999999998875

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.36  E-value=1.6e-12  Score=69.40  Aligned_cols=58  Identities=21%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |..||.|.|||+.+..   .++.|++|++.+.|+..++++.  .|.+|+.|.+++.||+++++
T Consensus       527 ccsdGnI~vwDLhnq~---~VrqfqGhtDGascIdis~dGt--klWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  527 CCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISKDGT--KLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             eccCCcEEEEEcccce---eeecccCCCCCceeEEecCCCc--eeecCCCccceeehhhhhhh
Confidence            5679999999998743   4558999999999999999999  89999999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.35  E-value=6.7e-12  Score=64.79  Aligned_cols=58  Identities=22%  Similarity=0.485  Sum_probs=51.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .|+.|++++|||+.++....   .+.+|-..++.+++++..+  ++++++.|+.|+.||++..
T Consensus       168 tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  168 TGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             ecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEEechhh
Confidence            36889999999999876443   6788999999999999999  9999999999999999754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.35  E-value=1.1e-11  Score=61.58  Aligned_cols=58  Identities=21%  Similarity=0.436  Sum_probs=50.2

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .....|++||+.+.. ..++..+.+|+..|..+.|..++.  ..++++.||++++||++..
T Consensus        58 a~~qhvRlyD~~S~n-p~Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~  115 (311)
T KOG0315|consen   58 AGNQHVRLYDLNSNN-PNPVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSL  115 (311)
T ss_pred             ccCCeeEEEEccCCC-CCceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCc
Confidence            345679999998764 446778999999999999999999  9999999999999999863

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.35  E-value=6.3e-12  Score=65.90  Aligned_cols=57  Identities=26%  Similarity=0.495  Sum_probs=49.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |..|+.+++||+..+....   .|.+|+++|..++|+..|.  ++++++.|+.|++||++.-
T Consensus       365 gt~d~~vkiwdlks~~~~a---~Fpght~~vk~i~FsENGY--~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVA---KFPGHTGPVKAISFSENGY--WLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             cCCCceEEEEEcCCccccc---cCCCCCCceeEEEeccCce--EEEEEecCCeEEEEEehhh
Confidence            5678999999998765444   6899999999999998888  9999999999999999853

>PTZ00420 coronin; Provisional

Probab=99.33  E-value=2.1e-11  Score=66.31  Aligned_cols=62  Identities=16%  Similarity=0.274  Sum_probs=48.6

Q ss_pred             ccccCeEEEEECCCCce-----EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.+...     ..+...+.+|...|.+++|+|.+.. ++++++.|+.|++||+++++
T Consensus        93 gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~  159 (568)
T PTZ00420         93 GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEK  159 (568)
T ss_pred             EeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCc
Confidence            67899999999875321     1123356789999999999998873 56789999999999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.33  E-value=9.2e-12  Score=64.42  Aligned_cols=60  Identities=13%  Similarity=0.266  Sum_probs=50.6

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|+.||+++|||+..-+...++..++-|..+|.++.|+|.... .+++++.|..|.+||+.
T Consensus       319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-VIAASGEDNQITIWDLS  378 (440)
T ss_pred             ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-eEEeccCCCcEEEEEee
Confidence            3678999999999764444566789999999999999997665 78888999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.33  E-value=7e-12  Score=63.35  Aligned_cols=61  Identities=25%  Similarity=0.389  Sum_probs=50.2

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++++|++|++|+++......+ .....|.+++.+++|+.++.  .+++++.|+.+++||+.+++
T Consensus        45 A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             ecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEccCCC
Confidence            478999999999986322222 23457889999999999998  99999999999999998874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.32  E-value=5.7e-12  Score=69.02  Aligned_cols=57  Identities=21%  Similarity=0.549  Sum_probs=49.9

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .|+.|+.|++||+.++....   .+.+|++.|..+.|+.++.  +|++++.|.+|++||+..
T Consensus       594 Sg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg~--vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  594 SGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDGN--VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCCC--EEEecCCCCeEEEEEchh
Confidence            36789999999998765333   6889999999999999999  999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.32  E-value=1.3e-11  Score=65.18  Aligned_cols=58  Identities=21%  Similarity=0.409  Sum_probs=51.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+|++||+..+....   .|..|+.+|.+++|+|++.  ++++|+.|+.|.+|+.++++
T Consensus       428 as~dstV~lwdv~~gv~i~---~f~kH~~pVysvafS~~g~--ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  428 ASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVAFSPNGR--YLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             eecCCeEEEEEccCCceeE---eeccCCCceEEEEecCCCc--EEEecCCCCeeEeccccchh
Confidence            5678999999998765444   6888999999999999999  99999999999999998774

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=2.2e-12  Score=70.09  Aligned_cols=56  Identities=14%  Similarity=0.385  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|.+++|||.++.....   .+.+|...|.++.|+|.-+  .+++|+.||++++|.-.+
T Consensus       203 gaDD~tiKvWDyQtk~CV~---TLeGHt~Nvs~v~fhp~lp--iiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  203 GADDLTIKVWDYQTKSCVQ---TLEGHTNNVSFVFFHPELP--IIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             cCCCceEEEeecchHHHHH---HhhcccccceEEEecCCCc--EEEEecCCccEEEecCcc
Confidence            6788999999999865444   6899999999999999999  999999999999997655

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.32  E-value=1.1e-11  Score=64.69  Aligned_cols=60  Identities=25%  Similarity=0.331  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.+.|||+.+. ...+....++|.+.+.+++|+|-+.. .|++++.|++|.+||+|+-
T Consensus       246 v~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  246 VGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNL  305 (422)
T ss_pred             ecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhc
Confidence            456889999999853 23333456789999999999998765 8999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.32  E-value=2.9e-11  Score=67.55  Aligned_cols=57  Identities=23%  Similarity=0.408  Sum_probs=48.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.++...   ..+.+|...|.+++|+| ++.  ++++++.|+.|++||++++
T Consensus       551 ~~~Dg~v~lWd~~~~~~~---~~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~  608 (793)
T PLN00181        551 SNFEGVVQVWDVARSQLV---TEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQG  608 (793)
T ss_pred             EeCCCeEEEEECCCCeEE---EEecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCC
Confidence            567899999999875433   35788999999999997 566  8999999999999999865

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.31  E-value=1e-11  Score=64.20  Aligned_cols=62  Identities=19%  Similarity=0.316  Sum_probs=52.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|..+++||..++........+.+|.+.|.++.|+|.+.. .+++++.|+++++||+++..
T Consensus       318 gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-QLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-EEEEEecCCeEEEEEeccCC
Confidence            678899999999876544445678899999999999998876 78999999999999998753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.31  E-value=1.9e-11  Score=67.54  Aligned_cols=58  Identities=17%  Similarity=0.345  Sum_probs=51.8

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+.|+.|++|+...+....   .|..|++.|..++|+..+.  .+++.+.||+|+.||+...
T Consensus       367 TG~eDgKVKvWn~~SgfC~v---TFteHts~Vt~v~f~~~g~--~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQSGFCFV---TFTEHTSGVTAVQFTARGN--VLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccCCCcEEEEeccCceEEE---EeccCCCceEEEEEEecCC--EEEEeecCCeEEeeeeccc
Confidence            47789999999998876555   7899999999999999999  9999999999999998654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.29  E-value=8.6e-12  Score=68.30  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|-+|++||+.+.+...   .+.+|++.|..++|+|++.  .+++.+.|+++++++.+.++
T Consensus       696 asyd~Ti~lWDl~~~~~~~---~l~gHtdqIf~~AWSpdGr--~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  696 ASYDSTIELWDLANAKLYS---RLVGHTDQIFGIAWSPDGR--RIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hhccceeeeeehhhhhhhh---eeccCcCceeEEEECCCCc--ceeeeecCceEEEeCCCCCC
Confidence            5678899999998765444   6889999999999999999  89999999999999987764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=5.7e-11  Score=58.89  Aligned_cols=62  Identities=23%  Similarity=0.451  Sum_probs=52.0

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC--CCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|++|++|+||...+......+..+.+|.++|..++|-.  .+.  +|++++.|+.+.+|...+|+
T Consensus        28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIiWke~~g~   91 (299)
T KOG1332|consen   28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVIIWKEENGR   91 (299)
T ss_pred             eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEEEecCCCc
Confidence            478899999999876544455668999999999999954  466  99999999999999988774

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.27  E-value=3.3e-11  Score=66.20  Aligned_cols=58  Identities=24%  Similarity=0.410  Sum_probs=50.7

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+.|.+.++|+++..   .....+.+|+..+.++.|+|..+  .++|++.|.+|++|.+.+.
T Consensus       480 T~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq--~laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQ--LLATCSGDKTVKIWSISTF  537 (775)
T ss_pred             ecccccceeeecccCc---eEEEEeeCCccceEEEEeccccc--eeEeccCCceEEEEEeccc
Confidence            4789999999999843   33447999999999999999998  9999999999999998765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.27  E-value=2.2e-11  Score=67.31  Aligned_cols=50  Identities=22%  Similarity=0.458  Sum_probs=46.0

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|++|+++++..+.   .+.+|.++|.+++|+|.+.  .|++++.|.+|++||+-
T Consensus       459 ~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~~--~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDGS--LLASGSWDKTVRIWDIF  508 (893)
T ss_pred             EEEEEEeecCeeee---hhcCCCCcceeeEEccccC--eEEeccccceEEEEEee
Confidence            58999999987666   6899999999999999999  99999999999999974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.26  E-value=3.5e-11  Score=62.86  Aligned_cols=59  Identities=17%  Similarity=0.378  Sum_probs=50.3

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|+.|++|++||+.+-.  .+...+.+|...|..+.|+|...+ .+++++.|+.+.+||+..
T Consensus       290 T~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  290 TGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccc
Confidence            36789999999998643  244578899999999999998877 899999999999999853

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.26  E-value=8.1e-11  Score=59.46  Aligned_cols=58  Identities=21%  Similarity=0.442  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++-|.+..+||++++....   .|.+|.+.|.++++.| +++  .+++|+.|...++||++.+.
T Consensus       162 ~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p~~~n--tFvSg~cD~~aklWD~R~~~  220 (343)
T KOG0286|consen  162 GSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSPSDGN--TFVSGGCDKSAKLWDVRSGQ  220 (343)
T ss_pred             cCCCceEEEEEcccceEEE---EecCCcccEEEEecCCCCCC--eEEecccccceeeeeccCcc
Confidence            5668888999999876444   7899999999999999 666  89999999999999999873

>PTZ00420 coronin; Provisional

Probab=99.26  E-value=9.7e-11  Score=63.78  Aligned_cols=57  Identities=9%  Similarity=0.109  Sum_probs=46.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+. +...|.+++|+|++.  ++++++.|+.+++||+++++
T Consensus       144 gS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        144 SGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             EeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCc
Confidence            4679999999998765332   333 456799999999999  89999999999999998764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.26  E-value=5e-11  Score=60.52  Aligned_cols=57  Identities=19%  Similarity=0.329  Sum_probs=48.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |..+-+|++.|+.++....   .+.+|++.|.++.|+|.... .|++++.|+.+++||++.
T Consensus       164 gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~Wsp~~e~-vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  164 GTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEWSPSSEW-VLATGSADGAIRLWDIRR  220 (397)
T ss_pred             ecCCCcEEEEeccCCccee---eeccccCceEEEEeccCcee-EEEecCCCceEEEEEeec
Confidence            4456789999998876444   68999999999999998875 899999999999999974

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.26  E-value=4.4e-12  Score=66.88  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=51.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|+||++...  ...++.+.+|..+|..++|++++.  .+++++.|+++++||+++|+
T Consensus       233 ~gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lKlwDtETG~  291 (503)
T KOG0282|consen  233 GGMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGT--SFLSASFDRFLKLWDTETGQ  291 (503)
T ss_pred             cCCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCC--eeeeeecceeeeeeccccce
Confidence            678999999998762  223457899999999999999999  89999999999999999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.24  E-value=6e-11  Score=65.24  Aligned_cols=59  Identities=20%  Similarity=0.374  Sum_probs=51.5

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +++.|.+|+||.+++.....   .+.+|+..|..+.|-..+.  .+++++.||.+++|++++++
T Consensus       522 T~SgD~TvKIW~is~fSClk---T~eGH~~aVlra~F~~~~~--qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  522 TCSGDKTVKIWSISTFSCLK---TFEGHTSAVLRASFIRNGK--QLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             eccCCceEEEEEeccceeee---eecCccceeEeeeeeeCCc--EEEeccCCCcEEEEeccchh
Confidence            36789999999998755444   7999999999999998888  89999999999999998763

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=4.8e-11  Score=65.73  Aligned_cols=57  Identities=16%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|.++++|++.....+.   .| .|.+-|+|++|+|-... ++++|+.|+.+++|++...
T Consensus       386 SSMDKTVRLWh~~~~~CL~---~F-~HndfVTcVaFnPvDDr-yFiSGSLD~KvRiWsI~d~  442 (712)
T KOG0283|consen  386 SSMDKTVRLWHPGRKECLK---VF-SHNDFVTCVAFNPVDDR-YFISGSLDGKVRLWSISDK  442 (712)
T ss_pred             ccccccEEeecCCCcceee---EE-ecCCeeEEEEecccCCC-cEeecccccceEEeecCcC
Confidence            5679999999998766555   34 59999999999996655 9999999999999998654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=9.5e-11  Score=59.65  Aligned_cols=59  Identities=19%  Similarity=0.400  Sum_probs=51.6

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.||.|.+|+...   +.....+++|.+.|+.++.+|.++  +.++.+.|..+++||+-.|+
T Consensus       102 S~sdDG~i~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  102 SGSDDGHIIIWRVGS---WELLKSLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             eecCCCcEEEEEcCC---eEEeeeecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCc
Confidence            367899999999864   455567899999999999999999  89999999999999998775

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=3.5e-11  Score=66.44  Aligned_cols=59  Identities=25%  Similarity=0.425  Sum_probs=47.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +..+|.+++||+....  .....+.+|+++|.++.|+|...  +|+||+.|+.+++|+...++
T Consensus       195 ~~dsG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  195 IHDSGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             ecCCceEEEeeccCch--hHHHHhhcccCceEEEeecCCCc--eeeecCCCccEEEEeccCCC
Confidence            3457899999997532  22235789999999999999666  99999999999999987653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=4.4e-11  Score=62.25  Aligned_cols=58  Identities=24%  Similarity=0.435  Sum_probs=51.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..|++|+-.+++.+.   .|.+|-..|..++|+.+..  ++.+|+.|.++++|++++.+
T Consensus       385 aSFDkSVkLW~g~tGk~la---sfRGHv~~VYqvawsaDsR--LlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  385 ASFDKSVKLWDGRTGKFLA---SFRGHVAAVYQVAWSADSR--LLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             eecccceeeeeCCCcchhh---hhhhccceeEEEEeccCcc--EEEEcCCCceEEEEEeeeee
Confidence            5789999999999887554   6899999999999999999  99999999999999998753

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.20  E-value=6.9e-11  Score=63.32  Aligned_cols=60  Identities=27%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccc--cEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVG--GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |..||.|.+|+..+.........-++|..  .|.+++|+++++  +|++-+.|.++++||+++-
T Consensus       335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeecccc
Confidence            56799999999854322211223356765  899999999999  9999999999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.20  E-value=1.1e-11  Score=64.07  Aligned_cols=56  Identities=27%  Similarity=0.440  Sum_probs=45.6

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .|++|.+|++||++.+..+.   .+.+|..-|+++.|.  .+  .+.+|+.||+|++||+.++
T Consensus       375 SGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd--~k--rIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  375 SGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFD--NK--RIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             ecCCCceEEEEeccccHHHH---HHhchHHhhhheeec--Cc--eeeeccccceEEEEecccc
Confidence            36788899999998776544   578899999999994  55  7889999999999998765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.18  E-value=2.4e-10  Score=59.69  Aligned_cols=57  Identities=26%  Similarity=0.414  Sum_probs=50.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..|.+|++.++....   .+. |.+.|.+++|+.++.  ++++.+.|..|++||.++++
T Consensus       150 ag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             ccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCc
Confidence            5678999999999887554   354 999999999999999  99999999999999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.16  E-value=8.4e-11  Score=65.45  Aligned_cols=57  Identities=21%  Similarity=0.392  Sum_probs=48.9

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..|-.|.++|..+.+   .++.+.+|.+.++.++|+|+++  .+++++.|++|++||+-++.
T Consensus       553 ~ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~Dgr--WlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGR--WLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             cCceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCc--EEEEeecCCcEEEEeccCcc
Confidence            456788999987754   3347999999999999999999  99999999999999998763

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.15  E-value=4.1e-10  Score=60.42  Aligned_cols=60  Identities=32%  Similarity=0.505  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+.|+.+.+||-.++........-.+|.+.|.+++|+|++.  .+++++.|.++++||+.+.
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--QFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--eEEEecCCceEEEEEeecc
Confidence            46799999999887764442212348999999999999999  8999999999999999765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.15  E-value=3.4e-10  Score=57.45  Aligned_cols=59  Identities=20%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCC-cEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.|+++++||+.++...    .+..|.++|..+.|.+... + .|++++.|.++++||.+...
T Consensus        89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~-cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQ-CLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcc-eeEecccccceeecccCCCC
Confidence            3678999999999887433    4678999999999976543 4 79999999999999998653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.14  E-value=3.6e-10  Score=59.41  Aligned_cols=58  Identities=14%  Similarity=0.236  Sum_probs=49.9

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .|+.|.+|++||+.+++...   .+..|...|.+++|+|..++ ++++|+.|+++.+.|.+.
T Consensus       261 SgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  261 SGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             ecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccC
Confidence            36789999999999876443   56678999999999998887 899999999999999983

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=3.6e-10  Score=63.83  Aligned_cols=56  Identities=18%  Similarity=0.351  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|++|+||+-++++...   .+.+|...|-|.+|+|.+.  .+++++.|-+|++||+..
T Consensus       111 ASDDQTIrIWNwqsr~~ia---vltGHnHYVMcAqFhptED--lIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  111 ASDDQTIRIWNWQSRKCIA---VLTGHNHYVMCAQFHPTED--LIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             ccCCCeEEEEeccCCceEE---EEecCceEEEeeccCCccc--eEEEecccceEEEEeecc
Confidence            6789999999998877655   6889999999999999888  899999999999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=2.3e-10  Score=56.71  Aligned_cols=59  Identities=29%  Similarity=0.478  Sum_probs=51.8

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|++|.++++|+...+....   .+.+|...|..++.+.++.  .+++|+.|..+.+||+.+|+
T Consensus        34 tcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             EcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEEEcccCe
Confidence            36789999999988765444   7889999999999999999  89999999999999999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.13  E-value=7.4e-10  Score=56.17  Aligned_cols=60  Identities=25%  Similarity=0.484  Sum_probs=50.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.|+.|.+|.......  -...+++|.+.|..+.|.+++.  .+++++.|.+++.||.++|+
T Consensus        64 SgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD~~tG~  123 (338)
T KOG0265|consen   64 SGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWDAETGK  123 (338)
T ss_pred             ecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEecccce
Confidence            367899999999754321  1125779999999999999999  99999999999999999985

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=5.5e-10  Score=59.20  Aligned_cols=58  Identities=19%  Similarity=0.279  Sum_probs=48.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|..+++||+.+...   ...+.+|++.|++.+++|...- .++||+.||+|++||.+..
T Consensus       129 ~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  129 GSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             cCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEeccC
Confidence            67788899999987542   3468899999999999997664 6889999999999999864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.12  E-value=5.2e-10  Score=61.20  Aligned_cols=57  Identities=12%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+..+-+++||..+.+..   +.+++|+..|+.+-.+.++.  .++++++|++|++||+...
T Consensus       189 Ggtek~lr~wDprt~~ki---mkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKI---MKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             cCcccceEEeccccccce---eeeeccccceEEEEEcCCCC--eEeecCCCceEEeeecccc
Confidence            556678999999875433   36889999999999999999  8999999999999999754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=7.2e-10  Score=55.24  Aligned_cols=57  Identities=18%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +-|+.++-||++++..   .+.+++|++.+.++.--....  .+++++.||++++||.++++
T Consensus       133 gGD~~~y~~dlE~G~i---~r~~rGHtDYvH~vv~R~~~~--qilsG~EDGtvRvWd~kt~k  189 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRI---QREYRGHTDYVHSVVGRNANG--QILSGAEDGTVRVWDTKTQK  189 (325)
T ss_pred             cCCeEEEEEEecCCEE---EEEEcCCcceeeeeeecccCc--ceeecCCCccEEEEeccccc
Confidence            4578899999998753   247999999999998855556  68999999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.10  E-value=6.7e-10  Score=55.78  Aligned_cols=58  Identities=24%  Similarity=0.380  Sum_probs=49.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|....+|-..++..+-   .+.+|++.|++++.+-+..  .+++++.|.++++||+++|+
T Consensus        28 caKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen   28 CAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             ecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEEEcCCCc
Confidence            5567777788766655444   7899999999999998888  99999999999999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.10  E-value=6.1e-10  Score=59.09  Aligned_cols=58  Identities=19%  Similarity=0.356  Sum_probs=47.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+++||.+++....   .+.. .....++.|+|++.. .+++|+.|+.|+.||.++++
T Consensus       276 ~sfD~~lKlwDtETG~~~~---~f~~-~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~k  333 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLS---RFHL-DKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGK  333 (503)
T ss_pred             eecceeeeeeccccceEEE---EEec-CCCceeeecCCCCCc-EEEEecCCCcEEEEeccchH
Confidence            5779999999999987554   3432 345689999999954 88899999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.08  E-value=3.3e-10  Score=59.30  Aligned_cols=57  Identities=18%  Similarity=0.373  Sum_probs=50.3

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +++.|..|++||..++..+.   .+.+|...|..+.|++.++  +|++++.|..++++|+++
T Consensus       239 sgskDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~n~N--~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNPNGN--WLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             EccCCceeEeecCCCcchhh---hhhhccceEEEEEEcCCCC--eeEEccCCceEEEEehhH
Confidence            36778899999999876555   5788999999999999997  999999999999999973

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.07  E-value=1.9e-09  Score=57.34  Aligned_cols=57  Identities=18%  Similarity=0.401  Sum_probs=47.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++|.+....   ++..+.+|.+.|.++.|+|.+.  +|++++.|+++++|....+
T Consensus       335 s~td~~i~V~kv~~~~---P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  335 SSTDGCIHVCKVGEDR---PVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             cCCCceEEEEEecCCC---cceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCC
Confidence            4567889998886432   3346888999999999999999  9999999999999986543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.07  E-value=8.4e-10  Score=55.99  Aligned_cols=57  Identities=14%  Similarity=0.353  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |.-|+.|++||+.......   .+.+|.++|..+..++++.  ++.+-++|.++++||++.-
T Consensus       192 ggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~gs--~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYGS--FLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             ccccCceeeeccccCcceE---EeecccCceeeEEeccCCC--ccccccccceEEEEEeccc
Confidence            4567889999997655444   6899999999999999999  9999999999999999753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.07  E-value=2.5e-10  Score=57.22  Aligned_cols=55  Identities=24%  Similarity=0.412  Sum_probs=47.3

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ++++|+.|++|+-++...+.   .++-|.+.|.+++|+|+..  ++++++.|..|.+|++
T Consensus       268 TAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfspd~~--lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  268 TAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSPDCE--LMAAASKDARISLWKL  322 (323)
T ss_pred             ecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCCCCc--hhhhccCCceEEeeec
Confidence            36789999999988754333   5778999999999999988  8999999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.6e-10  Score=65.16  Aligned_cols=56  Identities=25%  Similarity=0.489  Sum_probs=47.9

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+|.|++||..=+....   .|.+|.++|++++|+|..+  ++.+|+.|..|++|++++.+
T Consensus        29 HsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen   29 HSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             cCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEecccce
Confidence            46889999986443333   6889999999999999999  99999999999999998754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=1.5e-09  Score=55.07  Aligned_cols=55  Identities=36%  Similarity=0.450  Sum_probs=46.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.||.|+++|+.++...    .+..|...++++.+.+...  .+++++.|.+|++||.++
T Consensus        71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccc
Confidence            567888899998876533    3677999999999998888  899999999999999984

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.06  E-value=1.9e-09  Score=58.61  Aligned_cols=56  Identities=23%  Similarity=0.474  Sum_probs=47.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|.+|++|+++++....   .+.+|.++|+++..+  +.  .+++++.|++|.+|++.+++
T Consensus       307 gs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  307 GSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRTGK  362 (537)
T ss_pred             ccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhhce
Confidence            5689999999998766554   566799999999996  66  89999999999999998764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=1.7e-09  Score=54.06  Aligned_cols=58  Identities=21%  Similarity=0.324  Sum_probs=47.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+++++||+......   +.+..|...+.++.|+..... .+++++.|+.|+.||+++-
T Consensus       166 ~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ky~~~-vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  166 ASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWSKYNHN-VLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             ccCCceEEEEEecCCCce---eEEEeccceeEeecccccCCc-EEEecCCCceEEEEehhhc
Confidence            467899999998753222   247889999999999876665 8999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.06  E-value=1.3e-09  Score=56.36  Aligned_cols=60  Identities=20%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK   65 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~   65 (65)
                      +|+.||.+-+|.+.++....   .+.+|+.++.+=.|.|+++  .++++..|++|++|++.++.+
T Consensus       165 AG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~pdGK--r~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  165 AGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIPDGK--RILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             eecCCCcEEEEECCCcceee---EecCCCCCcccccccCCCc--eEEEEecCceEEEEecCCCce
Confidence            47889999999998753232   5789999999999999999  899999999999999998853

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=1.7e-09  Score=59.32  Aligned_cols=57  Identities=30%  Similarity=0.494  Sum_probs=50.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|+.|..|++|+..+...   +..|.+|.+-|++++.+|..+  ++++++.|.+|++||-+.
T Consensus        72 ~GsDD~~IrVfnynt~ek---V~~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~  128 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNTGEK---VKTFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWEN  128 (794)
T ss_pred             EecCCceEEEEeccccee---eEEeeccccceeeeeecCCCC--eEEecCCccEEEEeeccC
Confidence            477899999999988543   447999999999999999999  999999999999999764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.05  E-value=3.2e-09  Score=55.01  Aligned_cols=58  Identities=17%  Similarity=0.267  Sum_probs=50.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|..-.+|++.++....   .+.+|...|.++.|+.++.  +|+++..+|.+.+|+..++.
T Consensus        82 GGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   82 GGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             cCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEEcccCc
Confidence            5667778899998876443   6889999999999999999  99999999999999998763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.04  E-value=1e-09  Score=57.05  Aligned_cols=56  Identities=20%  Similarity=0.415  Sum_probs=46.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++|++|+.||+.++....   .+. .....++++++|...  ++++++.|..+++||++++
T Consensus       277 ~SwDHTIk~WDletg~~~~---~~~-~~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  277 VSWDHTIKVWDLETGGLKS---TLT-TNKSLNCISYSPLSK--LLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             ecccceEEEEEeeccccee---eee-cCcceeEeecccccc--eeeecCCCCceeecCCCCC
Confidence            6889999999998865443   232 234678999999888  9999999999999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.03  E-value=8.1e-10  Score=57.81  Aligned_cols=63  Identities=14%  Similarity=0.311  Sum_probs=52.2

Q ss_pred             CccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.|.+|.||++..+.    ...++..+.+|...|--++|+|.-.+ .|++++.|++|.+|++.+|+
T Consensus        99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn~v~iWnv~tge  165 (472)
T KOG0303|consen   99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDNTVSIWNVGTGE  165 (472)
T ss_pred             cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCceEEEEeccCCc
Confidence            36788999999986432    23345578899999999999998776 89999999999999999885

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=7.4e-10  Score=61.48  Aligned_cols=62  Identities=16%  Similarity=0.328  Sum_probs=49.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++.+|.|-+||+.....-.....|..|...+.+++|++..+. +|++|+.|++|++||++..
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecc
Confidence            3577899999999752111112257789999999999998876 8999999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.01  E-value=1.5e-09  Score=55.16  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      |+.|+.|++||....+  .++..+.+|...|.++.|+|...+ ++++++.|..+.+|+-.
T Consensus       233 ~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~VRfn~~hdq-LiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  233 CGDDGYVRIWDTRKTK--FPVQELPGHSHWVWAVRFNPEHDQ-LILSGGSDSAVNLSCAS  289 (370)
T ss_pred             cCCCccEEEEeccCCC--ccccccCCCceEEEEEEecCccce-EEEecCCCceeEEEecc
Confidence            6789999999987643  345578899999999999998877 89999999999999653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.00  E-value=2.7e-09  Score=59.38  Aligned_cols=57  Identities=23%  Similarity=0.424  Sum_probs=49.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|+.||.|++|+..+.....   .+.+|...|+.+.|...|.  .+++|+.|+.|.+||+-.
T Consensus        82 VGYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~  138 (888)
T KOG0306|consen   82 VGYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVG  138 (888)
T ss_pred             EEecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEecc
Confidence            57889999999998653333   6889999999999999999  999999999999999853

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=5.3e-09  Score=53.15  Aligned_cols=54  Identities=17%  Similarity=0.297  Sum_probs=45.3

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |.+|+.-++.+.+..   +.|+||...|..++.+|.+.  .+++++.|.+|++||++..
T Consensus        79 d~tIryLsl~dNkyl---RYF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~  132 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYL---RYFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVK  132 (311)
T ss_pred             CCceEEEEeecCceE---EEcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCC
Confidence            567777777665433   37999999999999999998  8999999999999999854

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.99  E-value=3.3e-10  Score=58.38  Aligned_cols=59  Identities=22%  Similarity=0.430  Sum_probs=50.9

Q ss_pred             CccccCeEEEEECCCCceEeeeEEee-cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.||.|++|.+.++..+.   .|. +|+..|.+++|+.++.  .+++++.|.++++..+++|+
T Consensus       280 sGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  280 SGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             ccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence            47889999999999876444   454 8999999999999999  89999999999999888774

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.98  E-value=1.1e-09  Score=56.56  Aligned_cols=58  Identities=26%  Similarity=0.420  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.++++.-+.+++.+.   .+++|.+.|+...|.+++.  .+++++.|+++++|+.++.+
T Consensus       324 ~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~--~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  324 ASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGH--HIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             ccccceEEEeccccchhHH---HhcCccccccceEEcCCCC--eEEEecCCccEEEecCcchh
Confidence            5678888888888776554   6899999999999999999  99999999999999987753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=1e-08  Score=51.62  Aligned_cols=58  Identities=21%  Similarity=0.441  Sum_probs=49.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|.+|++|.-..+.....+..+.+|...|.+++|++.+.  .+++++.|+++++|...
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~--rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS--RLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc--eEEEecCCcceEeeeec
Confidence            67899999998774444666678899999999999999998  89999999999999743

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.97  E-value=1.5e-09  Score=55.70  Aligned_cols=58  Identities=17%  Similarity=0.433  Sum_probs=47.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.-|.|+|.|..++....   .+.+|...|+.+.++|..++ ++++++.|..|++|++++.
T Consensus       111 ~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             ecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCC
Confidence            3445778888887654333   57899999999999999887 9999999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1.7e-08  Score=50.89  Aligned_cols=59  Identities=24%  Similarity=0.468  Sum_probs=50.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|.++.||.-..+. +..+..+.+|...|.+++|++++.  +|++|+.|..+=+|....+
T Consensus        79 aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             eeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCC
Confidence            5778889999876543 555668999999999999999999  9999999999999987644

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.96  E-value=6.3e-09  Score=53.99  Aligned_cols=57  Identities=18%  Similarity=0.457  Sum_probs=51.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|.+|++|++.++....   .+.+|...++.++.+.++.  ++++++.|.++++|.+.++
T Consensus       211 ~srD~tik~We~~tg~cv~---t~~~h~ewvr~v~v~~DGt--i~As~s~dqtl~vW~~~t~  267 (406)
T KOG0295|consen  211 CSRDNTIKAWECDTGYCVK---TFPGHSEWVRMVRVNQDGT--IIASCSNDQTLRVWVVATK  267 (406)
T ss_pred             cccccceeEEecccceeEE---eccCchHhEEEEEecCCee--EEEecCCCceEEEEEeccc
Confidence            6789999999999876554   7899999999999999999  9999999999999988765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.94  E-value=1.1e-09  Score=59.03  Aligned_cols=57  Identities=19%  Similarity=0.433  Sum_probs=47.1

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.||.++||++.+.....   ..+..-+...|++|+||++  ++++++.|-.|.+|.+..++
T Consensus       309 SqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  309 SQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             ecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccce
Confidence            678999999987754333   3556667889999999999  99999999999999987653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=7.1e-09  Score=55.73  Aligned_cols=60  Identities=18%  Similarity=0.335  Sum_probs=48.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe--cCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC--GDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~~~~i~~w~~~~~~   64 (65)
                      .|++|+.+.|||....   .+...+..|...|.+++|+|-... +|++|  +.|+.|++||..+|.
T Consensus       318 SGgnDN~~~Iwd~~~~---~p~~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  318 SGGNDNVVFIWDGLSP---EPKFTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             cCCCccceEeccCCCc---cccEEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCc
Confidence            3788999999998542   233367889999999999997665 78885  478999999998774

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=4.1e-09  Score=54.36  Aligned_cols=56  Identities=21%  Similarity=0.494  Sum_probs=46.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|.+.++||+..  ....+..|++|+..|.++.|..+..   +.+++.|.++++||+++
T Consensus       332 sSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd~---vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  332 SSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDDR---VVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             eccCceeEeccchh--hcceeeeecccccceeEEEEecCCc---eeecCCCceEEEeeecc
Confidence            46688899999974  3444557999999999999987765   78999999999999976

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=8.5e-09  Score=54.46  Aligned_cols=61  Identities=21%  Similarity=0.390  Sum_probs=51.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+.-+|++...........+.+|..+|..+.|+|+..  ++++|+.+-.+.+||+.+|.
T Consensus       242 aSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwDv~tgd  302 (519)
T KOG0293|consen  242 ASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWDVDTGD  302 (519)
T ss_pred             ccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeeccCCcch
Confidence            56778888898765544555667889999999999999999  99999999999999999874

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.92  E-value=1.5e-09  Score=57.69  Aligned_cols=57  Identities=30%  Similarity=0.483  Sum_probs=48.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |..+|+|.+|+......+.   .+-.|.++|.++++.+.+.  +.+|.+.|..+++||++.-
T Consensus       269 GhsnGtVSlWSP~skePLv---KiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  269 GHSNGTVSLWSPNSKEPLV---KILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             cCCCceEEecCCCCcchHH---HHHhcCCCcceEEECCCCc--EEeecccccceeEeeeccc
Confidence            5678999999987643232   4667999999999999999  9999999999999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.92  E-value=7.5e-10  Score=55.34  Aligned_cols=59  Identities=25%  Similarity=0.628  Sum_probs=47.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+++..+++||++....  +...+.+|.+.|+.+-|....+  .+++...|++|++||.+++.
T Consensus       118 gg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc~eD~--~iLSSadd~tVRLWD~rTgt  176 (334)
T KOG0278|consen  118 GGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWCHEDK--CILSSADDKTVRLWDHRTGT  176 (334)
T ss_pred             cchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEeccCc--eEEeeccCCceEEEEeccCc
Confidence            55667788899876432  2236789999999999998888  78888999999999999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.91  E-value=1.7e-08  Score=56.82  Aligned_cols=59  Identities=10%  Similarity=0.136  Sum_probs=47.7

Q ss_pred             ccccCeEEEEECCCCc---eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGD---EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|+.|++||+....   ....+..+.+|...+..++|++++.  ++++++.|+.+.+|+...
T Consensus       678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~--~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG--YIATGSETNEVFVYHKAF  739 (793)
T ss_pred             EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC--EEEEEeCCCEEEEEECCC
Confidence            5679999999986421   1223446788998899999999998  999999999999999753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.91  E-value=1.7e-08  Score=55.07  Aligned_cols=59  Identities=25%  Similarity=0.480  Sum_probs=49.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+.+|++|+..++....  ..+.+|.+.|.++++...+.  ++++|+.|.++++||..+|.
T Consensus       224 ~s~~~tl~~~~~~~~~~i~--~~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  224 GSDDSTLHLWDLNNGYLIL--TRLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             cCCCceeEEeecccceEEE--eeccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCCCc
Confidence            5678889999988764332  24889999999999987677  89999999999999998874

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=6.9e-09  Score=56.06  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=48.8

Q ss_pred             ccccCeEEEEECCC-----CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNG-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|+.+++|.++.     .....++..|.+|.++|.|+++.+.+.  .+++++.|++|+.|++.
T Consensus       312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~I~~w~~p  374 (577)
T KOG0642|consen  312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGTIRCWNLP  374 (577)
T ss_pred             eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCceeeeeccC
Confidence            56789999999842     223556678999999999999998888  99999999999999664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.89  E-value=3.2e-08  Score=48.35  Aligned_cols=57  Identities=32%  Similarity=0.576  Sum_probs=45.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.++.+++|++..+....   .+..|...+.++.|++++.  ++++++.++.+.+|+++++
T Consensus        69 ~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~  125 (289)
T cd00200          69 GSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETG  125 (289)
T ss_pred             EcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCc
Confidence            4568999999998643222   4667888899999999877  8888888999999999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.89  E-value=5.2e-09  Score=56.43  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             CccccCeEEEEECCCCceEeeeEE---eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +++.|+++++|++...+.-..+..   -.+.+-++..++|+++++  .+++++.||.|.+|+..
T Consensus       286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~--~iAagc~DGSIQ~W~~~  347 (641)
T KOG0772|consen  286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK--LIAAGCLDGSIQIWDKG  347 (641)
T ss_pred             EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc--hhhhcccCCceeeeecC
Confidence            367899999999976432111111   123345678899999999  89999999999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.88  E-value=4.3e-08  Score=47.88  Aligned_cols=57  Identities=26%  Similarity=0.542  Sum_probs=46.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.++.+.+|++.+....   ..+..|...+..+.|++++.  .+++++.++.+.+|++.++
T Consensus        27 ~~~~g~i~i~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200          27 GSGDGTIKVWDLETGELL---RTLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             eecCcEEEEEEeeCCCcE---EEEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEEcCcc
Confidence            455899999999765422   24667888888999999998  8999999999999999764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=8e-09  Score=53.26  Aligned_cols=58  Identities=24%  Similarity=0.457  Sum_probs=45.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +.+++.|++||..++..+.   .++++...+..+.|..+ ... .+.+|+.||+|++||++..
T Consensus        46 ~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~  104 (376)
T KOG1188|consen   46 SLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQ  104 (376)
T ss_pred             EecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecc
Confidence            4567899999998865444   68888888888888653 332 6889999999999999864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=1.7e-08  Score=51.76  Aligned_cols=58  Identities=19%  Similarity=0.398  Sum_probs=46.5

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCC-cEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .|++|.+|+|||+.+.....   .+-.|.+.|+++.|.++-. . .|++|+.||.|.+|+...
T Consensus        58 SGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   58 SGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             ccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchh-heeeecCCCcEEEEEcCC
Confidence            37889999999998754333   4667899999999987542 2 689999999999998764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=1.3e-09  Score=60.31  Aligned_cols=56  Identities=14%  Similarity=0.405  Sum_probs=48.7

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +|+.+|+|++||++..+...   .+.+|...+..++|+|.+.  +.++++.|..+++||.+
T Consensus        87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIR  142 (825)
T ss_pred             ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--Eeccccccccceehhhh
Confidence            46788999999998755333   6889999999999999998  89999999999999987

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.82  E-value=5e-08  Score=52.80  Aligned_cols=61  Identities=16%  Similarity=0.394  Sum_probs=50.9

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.|+.+++|.+.... +.....+..|++.+..++|+|++.  +|+++...+.+.+||+.+.+
T Consensus       460 VGG~Dgkvhvysl~g~~-l~ee~~~~~h~a~iT~vaySpd~~--yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDE-LKEEAKLLEHRAAITDVAYSPDGA--YLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             EecccceEEEEEecCCc-ccceeeeecccCCceEEEECCCCc--EEEEeccCCcEEEEEcccCc
Confidence            47889999999997654 233335667999999999999999  99999999999999997653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.81  E-value=1.2e-08  Score=56.10  Aligned_cols=59  Identities=22%  Similarity=0.252  Sum_probs=48.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++-|.+++.||+...... -.+.+.+|+..+..++|+|.++. .+++|+.|+.+.+||.+.
T Consensus       118 asGDsT~r~Wdvk~s~l~-G~~~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen  118 ASGDSTIRPWDVKTSRLV-GGRLNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             ccCCceeeeeeeccceee-cceeecccccccchhhhccCCCc-ceeeccCCCcEEEEEEec
Confidence            356889999999875422 22357899999999999998886 899999999999999875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=7.5e-08  Score=53.15  Aligned_cols=61  Identities=10%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.||.+..++...+. ....+.+...++++.+++|+|++.  .+++|+.|+.|++||...+.
T Consensus       127 IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  127 IGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             eecCCceEEEEecCCce-EEEEeecccccceEEEEEecCCcc--EEEecccCceEEEEEcCCCc
Confidence            45678877777776553 333345555678999999999998  89999999999999998764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.5e-08  Score=52.79  Aligned_cols=56  Identities=20%  Similarity=0.359  Sum_probs=46.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |..+..|.||+..+..   ++..+.+|..+|..++++|++.  .+++++.|.++++|++-.
T Consensus       407 G~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~--~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  407 GYSENQITLWKYPSMK---LVAELLGHTSRVLYLALSPDGE--TIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCCCCcEEEEeccccc---eeeeecCCcceeEEEEECCCCC--EEEEecccCcEEeccccC
Confidence            4456788999987743   3346889999999999999999  999999999999998743

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.81  E-value=6.8e-08  Score=49.34  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++-|-+-.|||++++.......++-+|...|..++|...+.. .+++++.||.++++|++.-
T Consensus       169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~l  229 (364)
T KOG0290|consen  169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSL  229 (364)
T ss_pred             ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEeccc
Confidence            455677789999886432233367789999999999987776 8999999999999999864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.80  E-value=1.2e-08  Score=56.11  Aligned_cols=59  Identities=25%  Similarity=0.389  Sum_probs=47.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEe-cCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++|-+|++|+...+. ......+..|.+.|.|+++ -+...  ++++|+.|+.|.+||+.++
T Consensus        91 ~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~  150 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTG  150 (735)
T ss_pred             ecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCc
Confidence            6789999999987654 1223357789999999999 44555  8999999999999999876

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.80  E-value=5.2e-08  Score=53.98  Aligned_cols=55  Identities=16%  Similarity=0.491  Sum_probs=45.3

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|++||.|+.|++.. ..+.   ...+|++-+.+++..+.+.  .+++++.|+++++|+..
T Consensus       195 ScsNDg~Ir~w~~~g-e~l~---~~~ghtn~vYsis~~~~~~--~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  195 SCSNDGSIRLWDLDG-EVLL---EMHGHTNFVYSISMALSDG--LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             eecCCceEEEEeccC-ceee---eeeccceEEEEEEecCCCC--eEEEecCCceEEEeecC
Confidence            368999999999943 3333   5789999999999777777  89999999999999764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=8.7e-09  Score=54.83  Aligned_cols=59  Identities=20%  Similarity=0.329  Sum_probs=48.0

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|...|.|++||..+...   ++.+.+|+.++....|+|...+ .+.+|+.|+.+++||+.++
T Consensus        85 aGD~sG~V~vfD~k~r~i---LR~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKSRVI---LRQLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             ccCCcCcEEEeccccHHH---HHHHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCc
Confidence            366778999999655322   2368899999999999998886 8888999999999999765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=1e-08  Score=52.94  Aligned_cols=53  Identities=26%  Similarity=0.541  Sum_probs=47.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ++.|++-+||.++++..+.   .+.+|.+.|++++|++.+.  ++++++.|.+..+|.
T Consensus       166 ASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  166 ASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIWK  218 (481)
T ss_pred             cccccceeEEeecccccee---eecccccceeeEEeccccc--eEEEccCCcchHHHH
Confidence            5678999999999987665   6889999999999999998  999999999999996

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=5.3e-09  Score=55.22  Aligned_cols=64  Identities=19%  Similarity=0.356  Sum_probs=45.7

Q ss_pred             CccccCeEEEEECCCCceEeeeEEe------------------ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEI------------------DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|..+..|.|||+.-.....+...+                  .+|++.|..++|+..-.. .|++++.|.+|.+||+.+
T Consensus       197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~lWD~~~  275 (463)
T KOG0270|consen  197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKLWDVDT  275 (463)
T ss_pred             EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEEEEcCC
Confidence            3566788999997532211111111                  257777888888876655 899999999999999998


Q ss_pred             CCC
Q 039404           63 GVK   65 (65)
Q Consensus        63 ~~~   65 (65)
                      |++
T Consensus       276 g~p  278 (463)
T KOG0270|consen  276 GKP  278 (463)
T ss_pred             CCc
Confidence            864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.79  E-value=1.2e-08  Score=51.25  Aligned_cols=61  Identities=21%  Similarity=0.432  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+++.+|.+.... ........+|.+.|-.++|+|..+. .+++++.|..|++||.+.++
T Consensus        38 gs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd~r~~k   98 (313)
T KOG1407|consen   38 GSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWDIRSGK   98 (313)
T ss_pred             cccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEEeccCc
Confidence            5678899999987542 2222246788889999999998776 89999999999999998875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.8e-08  Score=52.78  Aligned_cols=57  Identities=25%  Similarity=0.415  Sum_probs=46.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++.||.+++|+.....   .......|...|..++|+|+++  ++++.+.| ..++|+..+|
T Consensus       161 tgg~dg~lRv~~~Ps~~---t~l~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  161 TGGTDGTLRVWEWPSML---TILEEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eccccceEEEEecCcch---hhhhhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccC
Confidence            35679999999965432   2223567888999999999999  99999988 9999999887

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.77  E-value=1.6e-07  Score=48.99  Aligned_cols=55  Identities=22%  Similarity=0.352  Sum_probs=45.6

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC-cEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK-TIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~-~i~~w~~~~~~   64 (65)
                      .|.|.+||..+   ..++..+..|.+.+-+++|+++|.  ++++++..| .|+++.+.+|+
T Consensus       152 ~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~  207 (391)
T KOG2110|consen  152 SGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQ  207 (391)
T ss_pred             CceEEEEEccc---ceeeeEEEecCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCcc
Confidence            47899999875   344457889999999999999999  999999887 56788887764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.76  E-value=3.4e-08  Score=52.06  Aligned_cols=56  Identities=11%  Similarity=0.315  Sum_probs=43.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      +|+.||.|+||+..+++. ..+....+....|.+++|+|.+.  .+++++.+..+.+|.
T Consensus       404 AGS~dgsv~iW~v~tgKl-E~~l~~s~s~~aI~s~~W~~sG~--~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  404 AGSADGSVYIWSVFTGKL-EKVLSLSTSNAAITSLSWNPSGS--GLLSADKQKAVTLWT  459 (459)
T ss_pred             eccCCCcEEEEEccCceE-EEEeccCCCCcceEEEEEcCCCc--hhhcccCCcceEecC
Confidence            478999999999988753 32222222233699999999999  899999999999993

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.76  E-value=3.3e-08  Score=51.59  Aligned_cols=54  Identities=30%  Similarity=0.456  Sum_probs=44.7

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|+.||.|++||+.......   .+++|.+.|.++++..  .  -+++++.|.+++.|...
T Consensus        84 SGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQWKID  137 (433)
T ss_pred             ccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeeeecc
Confidence            47889999999998754333   6899999999999976  3  68899999999999753

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=9.3e-08  Score=54.24  Aligned_cols=59  Identities=14%  Similarity=0.369  Sum_probs=48.3

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.|-.|++-+.....   ....+++|.++|.+++|+|.+.  +|++...||.+++|++.++.
T Consensus       113 agsdD~~vK~~~~~D~s---~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen  113 AGSDDTAVKLLNLDDSS---QEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQIWDLQDGI  171 (933)
T ss_pred             eecCceeEEEEeccccc---hheeecccCCceeeeeEcCCCC--EEEEEecCceEEEEEcccch
Confidence            36677788887775532   2235889999999999999999  99999999999999998763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.75  E-value=2.7e-08  Score=50.76  Aligned_cols=57  Identities=26%  Similarity=0.504  Sum_probs=44.4

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+++..||+.+......  .-.+|...++.+.|+|..+- +|++|+.|+.+++||.+.-
T Consensus       191 ~d~tl~~~D~RT~~~~~s--I~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  191 SDSTLQFWDLRTMKKNNS--IEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             CCCcEEEEEccchhhhcc--hhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCC
Confidence            577888999987543221  22467778999999998775 7899999999999999753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=2.1e-07  Score=47.86  Aligned_cols=58  Identities=24%  Similarity=0.497  Sum_probs=45.4

Q ss_pred             CccccCeEEEEECCCC-ceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEEC
Q 039404            1 VAYSRHIVQIYPCNGG-DEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~   60 (65)
                      +|+.|+.++|||.... .........+.|.+.|..+.|-+.  |+  .+++|+.|+++.+|.-
T Consensus        30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVSIWEE   90 (361)
T ss_pred             eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCceeeeee
Confidence            4789999999996432 234444567889999999999543  45  8999999999999954

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.8e-08  Score=57.78  Aligned_cols=61  Identities=16%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             ccccCeEEEEECCC---CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |..||.|-+||...   +.....+..+..|.+.|+.++|++...+ ++++|+.+|.|.+||+..-
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~  149 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKP  149 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCc
Confidence            45689999999754   2233334467789999999999998776 8999999999999999753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.73  E-value=6.5e-08  Score=55.21  Aligned_cols=55  Identities=22%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|++|.+|+..+-.   ....+.+|.+.|.++.|.|.++  ++++-+.|+++++|+..
T Consensus       147 ~s~DnsViiwn~~tF~---~~~vl~~H~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  147 VSLDNSVIIWNAKTFE---LLKVLRGHQSLVKGVSWDPIGK--YFASQSDDRTLKVWRTS  201 (942)
T ss_pred             ecccceEEEEccccce---eeeeeecccccccceEECCccC--eeeeecCCceEEEEEcc
Confidence            5678999999987643   3347899999999999999999  99999999999999854

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.73  E-value=4.4e-08  Score=50.49  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=47.2

Q ss_pred             CccccCeEEEEECCCC---------------ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGG---------------DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|+.|..|+|.|.+..               .....++.+..|.+.|..+.|+|...  .|++++.|++++++|+..
T Consensus       129 TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~--ILiS~srD~tvKlFDfsK  203 (430)
T KOG0640|consen  129 TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET--ILISGSRDNTVKLFDFSK  203 (430)
T ss_pred             ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--eEEeccCCCeEEEEeccc
Confidence            3677889999997611               01112456677899999999999999  999999999999999853

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.73  E-value=6.3e-08  Score=49.96  Aligned_cols=58  Identities=21%  Similarity=0.412  Sum_probs=46.3

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .-..+++||+.+......-.+-..|++.|+++.+++.+.  +.++++.||.|++||-.++
T Consensus       236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~  293 (430)
T KOG0640|consen  236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS--LYVTASKDGAIKLWDGVSN  293 (430)
T ss_pred             CCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--EEEEeccCCcEEeeccccH
Confidence            345688999987654443334567899999999999999  9999999999999986543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=4e-08  Score=54.72  Aligned_cols=58  Identities=22%  Similarity=0.408  Sum_probs=48.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|..+++||+.......   .+.+|...+..+.|+|++.  ++++++.|..+++||...|+
T Consensus       130 gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~agk  187 (825)
T KOG0267|consen  130 GSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSPDGR--WVASGGEDNTVKIWDLTAGK  187 (825)
T ss_pred             ccccccceehhhhccCcee---eecCCcceeEEEeecCCCc--eeeccCCcceeeeecccccc
Confidence            5678889999997533233   5778999999999999999  99999999999999997664

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=3.6e-08  Score=52.44  Aligned_cols=53  Identities=21%  Similarity=0.309  Sum_probs=46.4

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      -.+.|++|.+.++..+.   .+.+|-..|+++.|+-++.  ++++++.|+.|.+|.+.
T Consensus       101 i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEE
Confidence            46789999999987555   4678888999999999999  99999999999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.69  E-value=2.9e-08  Score=50.81  Aligned_cols=62  Identities=24%  Similarity=0.530  Sum_probs=47.0

Q ss_pred             CccccCeEEEEECCCCc-eEe----------e-eEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGD-EVR----------Q-HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~-~~~----------~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.|+.+++||+.... .+.          + ...-.+|.+.+++++|..++.  ++++++.|..+++|+..+|+
T Consensus       206 tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  206 TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch--hhhhccCccceEEeecccCc
Confidence            37889999999986431 111          0 011235778899999999999  89999999999999998875

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.68  E-value=7.9e-08  Score=51.24  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             CccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +++.|++.+|||+..-. ...+......|+..|.+..|+|.+.  .|++.+.|..|++||..
T Consensus       340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--ceEeeccCCceEEeecc
Confidence            36889999999986421 1112222346888999999999998  78888999999999974

>smart00320 WD40 WD40 repeats

Probab=98.68  E-value=2.8e-07  Score=32.27  Aligned_cols=34  Identities=44%  Similarity=0.838  Sum_probs=29.9

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      .+..|...+.+++|++.+.  .+++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGK--YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCC--EEEEecCCCeEEEcC
Confidence            4567888899999999887  899999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.67  E-value=2.3e-08  Score=55.50  Aligned_cols=62  Identities=18%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             CccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++..|+.|++|.+..+.    ...+...+..|...|.++.|+|--.. .|++++.|.+|.+||+.++
T Consensus       645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl~~~  710 (1012)
T KOG1445|consen  645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDLANA  710 (1012)
T ss_pred             ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeehhhh
Confidence            45678999999986533    12234467889999999999997665 8999999999999999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=6e-08  Score=50.12  Aligned_cols=37  Identities=32%  Similarity=0.627  Sum_probs=34.3

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .+++|.+.|.+++|+.+++  .+++++.|+.|++|+++.
T Consensus        81 ~LKgH~~~vt~~~FsSdGK--~lat~~~Dr~Ir~w~~~D  117 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGK--KLATISGDRSIRLWDVRD  117 (420)
T ss_pred             hhhccCCceeeeEEcCCCc--eeEEEeCCceEEEEecch
Confidence            4689999999999999999  999999999999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=2.7e-07  Score=49.28  Aligned_cols=64  Identities=20%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             CccccCeEEEEECCC------CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|++||.|.+|++..      .....+...+..|+-+|..+...+.+....+++++.|.++++||+..|.
T Consensus       140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            378999999998631      1123455678899999999888765322289999999999999998764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.65  E-value=7.4e-08  Score=48.54  Aligned_cols=59  Identities=15%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.|..+-+||++.-.   -++.+..+.-+|+.++|+.+++  +|++++.|..|-+=++.+|.
T Consensus       206 ~GsADAlvSLWD~~ELi---C~R~isRldwpVRTlSFS~dg~--~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  206 TGSADALVSLWDVDELI---CERCISRLDWPVRTLSFSHDGR--MLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             eccccceeeccChhHhh---hheeeccccCceEEEEeccCcc--eeeccCccceEEeEecccCC
Confidence            47888999999987532   3346777888999999999999  99999999999988888775

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.62  E-value=1.4e-07  Score=48.92  Aligned_cols=57  Identities=11%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +..+.+||....... .......|.+.|++++|+|..++ .|++|+.||.+.++|++..
T Consensus       142 ~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             ceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeeecCCC
Confidence            556889998754321 11135679999999999999887 9999999999999998753

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.59  E-value=4.6e-07  Score=48.00  Aligned_cols=60  Identities=12%  Similarity=0.237  Sum_probs=42.6

Q ss_pred             ccccCeEEEEECCCCceEeeeE--EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++-|..+.+.|+.+.....+..  .++ .......+.|+|++.  ++++|+.|+.+++|++.+++
T Consensus       359 ssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtrvvfSpd~~--YvaAGS~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  359 SSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTRVVFSPDGS--YVAAGSADGSVYIWSVFTGK  420 (459)
T ss_pred             ecCCCceeeeecccccEEEEeeccccc-cccccceeEECCCCc--eeeeccCCCcEEEEEccCce
Confidence            3456778888887644222111  111 123467899999999  99999999999999998874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.59  E-value=1.9e-07  Score=47.29  Aligned_cols=58  Identities=28%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |..||.|.+||+.++....  .....|...|+.++++++..  ++++++.|.+-++||+++-
T Consensus       165 Ghe~G~is~~da~~g~~~v--~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELV--DSDEEHSSKINDLQFSRDRT--YFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             ecCCCcEEEEEcccCceee--echhhhccccccccccCCcc--eEEecccCccceeeeccce
Confidence            5678999999998865332  23456888999999999999  9999999999999998763

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.59  E-value=2e-07  Score=52.11  Aligned_cols=38  Identities=39%  Similarity=0.777  Sum_probs=34.2

Q ss_pred             EEee-cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           23 LEID-AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        23 ~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +.+. +|.+.|+++.|+++|+  ++++++.|+.|++|.+..
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGK--yLAsaGeD~virVWkVie  298 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGK--YLASAGEDGVIRVWKVIE  298 (712)
T ss_pred             eccccccCCcEEEEEeCCCCc--eeeecCCCceEEEEEEec
Confidence            3455 8999999999999999  999999999999998865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.59  E-value=4e-07  Score=51.24  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +-.|.++++|-+.+-+   ....+.||.-+|.+++.+|+++  .++||+.|..|++|-+.-|
T Consensus       526 sLLdnTVkVyflDtlK---FflsLYGHkLPV~smDIS~DSk--livTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDTLK---FFLSLYGHKLPVLSMDISPDSK--LIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             EeccCeEEEEEeccee---eeeeecccccceeEEeccCCcC--eEEeccCCCceEEeccccc
Confidence            3457888898887633   2235789999999999999999  9999999999999977544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.58  E-value=1.2e-06  Score=45.14  Aligned_cols=58  Identities=16%  Similarity=0.304  Sum_probs=43.4

Q ss_pred             ccccCe-EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHI-VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++..|+ |+|||..++......+.- .....+.+++|+|+..  +++.++..+++.++.++.
T Consensus       199 aStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFSp~~s--~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  199 ASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFSPNSS--WLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeCCCcc--EEEEEcCCCeEEEEEeec
Confidence            344554 889999987655522221 1235689999999999  999999999999998865

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=1.5e-07  Score=48.71  Aligned_cols=54  Identities=24%  Similarity=0.455  Sum_probs=42.1

Q ss_pred             CeEEEEECC---CCc--eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            6 HIVQIYPCN---GGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         6 ~~i~i~~~~---~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ..+++|..-   .+.  ....+..+++|.+.|..++|+++..  .+++.+.||++++||..
T Consensus       250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--RAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--eeEEEecCCcEEEeecc
Confidence            457888752   121  2233457899999999999999998  89999999999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=1.8e-07  Score=46.84  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|+.|.||.-+++ ...+......|...|++++|-|.+..+.|++++.||.|.+.++++
T Consensus        76 csYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~  135 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS  135 (299)
T ss_pred             eecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence            678999999998776 455455667889999999998865543788999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.6e-06  Score=44.44  Aligned_cols=55  Identities=20%  Similarity=0.333  Sum_probs=38.3

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccc---cEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+.+++.|.-.+....   .+.++..   .-....|.|+++  ++++++.|++|.+|++++|.
T Consensus       208 ~s~~~~lDAf~G~~~~---tfs~~~~~~~~~~~a~ftPds~--Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  208 ASFIYLLDAFDGTVKS---TFSGYPNAGNLPLSATFTPDSK--FVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             CCcEEEEEccCCcEee---eEeeccCCCCcceeEEECCCCc--EEEEecCCCcEEEEEcCCCc
Confidence            3445666665554333   3333321   225678999999  99999999999999998875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.53  E-value=2.6e-07  Score=51.36  Aligned_cols=53  Identities=15%  Similarity=0.432  Sum_probs=41.9

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +|+.|.+|++|.-.+  ..   +.+.+|++.|+++++-++..   +++|+.||.|++|++.
T Consensus       156 TgsaDKtIklWk~~~--~l---~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~~  208 (745)
T KOG0301|consen  156 TGSADKTIKLWKGGT--LL---KTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDLD  208 (745)
T ss_pred             eccCcceeeeccCCc--hh---hhhccchhheeeeEEecCCC---eEeecCCceEEEEecc
Confidence            367788888887532  22   26889999999999987654   7899999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.53  E-value=9.8e-08  Score=49.89  Aligned_cols=58  Identities=24%  Similarity=0.335  Sum_probs=47.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|..+..||+..-  ..+....++|.+.|..++|+|.|.  -+++|+.|.+|+++.++.+
T Consensus       247 a~ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsptG~--EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  247 ANEDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSPTGQ--EFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             ccccccceehhhhhh--cccchhhcccceeEEEeccCCCcc--hhccccccceEEEeecCCC
Confidence            567778888887642  233445778999999999999999  7999999999999988765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.53  E-value=3.4e-07  Score=48.86  Aligned_cols=56  Identities=23%  Similarity=0.456  Sum_probs=46.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |..|..|.||+..+...   +..+++|.+.|.+++|-....  -+++++.|+.+++|++..
T Consensus       220 gg~d~~v~Iw~~~t~eh---v~~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEH---VKVFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             cCCCceEEEecCcccch---hhcccccccceeeeeeecCcc--ceeeeecCCceEEEehhH
Confidence            56678899999987543   336899999999999976666  789999999999998753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.52  E-value=4.9e-07  Score=50.76  Aligned_cols=52  Identities=17%  Similarity=0.392  Sum_probs=45.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +..+.+||.+.+....   ++++|.+.|.+++|+.++.  .+++|+.|..+.+|+..
T Consensus        32 g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK   83 (1081)
T ss_pred             CCEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc
Confidence            4568899998776555   7999999999999999999  99999999999999763

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.51  E-value=1e-06  Score=46.57  Aligned_cols=58  Identities=21%  Similarity=0.361  Sum_probs=46.0

Q ss_pred             ccccCeEEEEECCCCc------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      |+.|..|++|-+....      ...-...+..|...|+++.|+|++.  ++++|+.++.+.+|...
T Consensus        32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFLWKQG   95 (434)
T ss_pred             ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEEEEec
Confidence            5678899999875322      2222345678899999999999999  99999999999999654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.50  E-value=5.9e-07  Score=46.08  Aligned_cols=55  Identities=24%  Similarity=0.334  Sum_probs=43.8

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ...|.|.|+...  -.++..+.+|++.|++++|.|.... ++.+++.|....+||+.+
T Consensus       265 S~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  265 SNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CceEEEEEecCC--CcceehhhcCcccccceEecCCCCc-eeeecCCcceEEEEeccc
Confidence            345677777642  2234468899999999999998776 999999999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.50  E-value=1.1e-06  Score=50.45  Aligned_cols=61  Identities=16%  Similarity=0.319  Sum_probs=49.3

Q ss_pred             CccccCeEEEEECCC----------C-----ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~----------~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+.|+.|.||....          +     ..+..+..+.+|...|..+.|+|++.  ++++++.|++|.+|+.++.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            467788899998652          0     12234556889999999999999999  9999999999999998765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.49  E-value=8.5e-07  Score=46.89  Aligned_cols=61  Identities=15%  Similarity=0.323  Sum_probs=48.7

Q ss_pred             ccccCeEEEEECC--------C-----CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCN--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.++.+.+|-..        +     ...+...+.+.+|...+..++|+|++.  ++.+++.|..+++||+..|.
T Consensus        83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccce
Confidence            5667889999765        2     112333456778999999999999999  99999999999999998874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.48  E-value=7e-07  Score=47.80  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=48.7

Q ss_pred             CccccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+..|+|-+|++.. .+....+..+..|..+|.++.|+|.+.. .+++.+.||+|++-|++.+
T Consensus       205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDGtiR~~D~~~~  267 (498)
T KOG4328|consen  205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDGTIRLQDFEGN  267 (498)
T ss_pred             EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCceeeeeeecch
Confidence            366778999999942 2223334467789999999999998765 7889999999999998764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.48  E-value=3.1e-06  Score=42.37  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=41.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+.+||+.++....   .+..+. .+..++|+|++.  .+ ++++.++.+.+||..+++
T Consensus         7 ~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~--~l~~~~~~~~~v~~~d~~~~~   64 (300)
T TIGR03866         7 NEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGK--LLYVCASDSDTIQVIDLATGE   64 (300)
T ss_pred             ecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCC--EEEEEECCCCeEEEEECCCCc
Confidence            4568899999997765333   444443 357799999988  55 566788999999988753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.47  E-value=3.1e-06  Score=45.38  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=44.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++|+.....|++++.....+.. +...-.+.+.+|||++.  .+.++..|+.+++||+.++
T Consensus       321 As~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  321 ASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCce--EEeccCCCceEEEEEcCCc
Confidence            46788888888887764442111 11223478999999999  9999999999999999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=7.3e-07  Score=45.69  Aligned_cols=57  Identities=19%  Similarity=0.276  Sum_probs=44.5

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++++|+++++||........   .+ .|..++.+++|.++ .  .+++++.|+.|+.+|+.+++
T Consensus        30 vssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~-~--~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   30 VSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADE-S--TIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             EEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCC-c--eEEEeccCceEEEEEecCCc
Confidence            46799999999987642111   23 47889999999864 4  68899999999999998764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=9.2e-07  Score=45.57  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=43.3

Q ss_pred             ccccCeEEEEECCCC-----------------ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGG-----------------DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      +..|| |+||.+...                 .....+..+..|++.|..+.|+-.+.  .|.+.+.||.+++|.-
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt--iLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT--ILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee--EEeecCCCceeeehhh
Confidence            45677 889987521                 02233445778999999999999998  8999999999999953

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.45  E-value=1.8e-06  Score=48.91  Aligned_cols=61  Identities=20%  Similarity=0.322  Sum_probs=48.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.+|..|+||++++++.......-.+|.+....+...|.+.  ++++.+.|.++.++|+.+|+
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EEEEeecCCceEEEEeccch
Confidence            56789999999998765442222234556677899999998  99999999999999998875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=2.3e-07  Score=53.54  Aligned_cols=56  Identities=14%  Similarity=0.412  Sum_probs=45.8

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..|.+||+...  ..+.+.+.+|...|.+++|++.+.. ++++++.|+.+.+|+..+|+
T Consensus       232 PviqlWDlR~a--ssP~k~~~~H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  232 PVIQLWDLRFA--SSPLKILEGHQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             ceeEeeccccc--CCchhhhcccccceeeeccCCCCch-hhhcccCCCCeeEecCCCce
Confidence            35889998653  2344467899999999999998754 89999999999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=3.4e-06  Score=42.26  Aligned_cols=62  Identities=10%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             CccccCeEEEEECCCCceEeeeE-Eeecc---cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHL-EIDAH---VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|++|.+|+.||+.-......+. .+++.   .+.|..++..|.+.  +++++..|....++|++.++
T Consensus       199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr--ll~sg~~dssc~lydirg~r  264 (350)
T KOG0641|consen  199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR--LLASGHADSSCMLYDIRGGR  264 (350)
T ss_pred             ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc--eeeeccCCCceEEEEeeCCc
Confidence            37889999999987543222111 12221   25688899999999  99999999999999998775

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.41  E-value=2.8e-06  Score=45.57  Aligned_cols=57  Identities=14%  Similarity=0.303  Sum_probs=44.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|..|.++++|.+.....+    .+.++.+.+-|++|-.+ .  ++++|+.+|.|.+|++-..+
T Consensus       303 VGgrDrT~rlwKi~eesql----ifrg~~~sidcv~~In~-~--HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  303 VGGRDRTVRLWKIPEESQL----IFRGGEGSIDCVAFIND-E--HFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             eccccceeEEEecccccee----eeeCCCCCeeeEEEecc-c--ceeeccCCceEEEeeecccC
Confidence            4668999999999543222    47788888999999644 3  79999999999999986543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=1.1e-06  Score=48.54  Aligned_cols=39  Identities=23%  Similarity=0.540  Sum_probs=36.2

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+.+|++.|++++..|.+.  .|++|+.||++++|.+.+|+
T Consensus       395 vyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgR  433 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGR  433 (733)
T ss_pred             eEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecce
Confidence            4689999999999999998  99999999999999998875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.40  E-value=7.8e-06  Score=40.93  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~~~~   64 (65)
                      ++.+.+||..+.....   .+ .+...+.+++|+|++.  .++++ +.++.|.+||.++++
T Consensus       228 ~~~i~v~d~~~~~~~~---~~-~~~~~~~~~~~~~~g~--~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       228 ANRVAVVDAKTYEVLD---YL-LVGQRVWQLAFTPDEK--YLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCeEEEEECCCCcEEE---EE-EeCCCcceEEECCCCC--EEEEEcCCCCeEEEEECCCCc
Confidence            4568899987654322   22 2334678999999999  77765 568999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=4.7e-06  Score=41.77  Aligned_cols=54  Identities=24%  Similarity=0.421  Sum_probs=44.1

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .|..-.+||+..+..   ++.+..|...|+++.|+|.-.  ++++|+.|..|++-|+..
T Consensus       251 ~dssc~lydirg~r~---iq~f~phsadir~vrfsp~a~--yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCCceEEEEeeCCce---eeeeCCCccceeEEEeCCCce--EEEEecccceEEEeeccc
Confidence            455666899876543   346888999999999999888  999999999999988753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.2e-06  Score=46.13  Aligned_cols=57  Identities=14%  Similarity=0.343  Sum_probs=44.9

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ...+.+..||...+....  ..+++-.+.++.+..+|.++  ++++++.|++++++|..+.
T Consensus       266 n~~g~l~~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  266 NTKGQLAKFDLRGGKLLG--CGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cccchhheecccCceeec--cccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccc
Confidence            344567778887654222  23677788999999999999  9999999999999999873

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=1.8e-06  Score=47.21  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=46.3

Q ss_pred             ccccCeEEEEECCCCc-------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+-||.|+.|.+....       .......+.||++.++.+.+++...  .|++|+.|+++++|.....
T Consensus       362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCc
Confidence            6779999999654211       1112235789999999999999888  8999999999999988654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.37  E-value=3.5e-07  Score=46.22  Aligned_cols=58  Identities=21%  Similarity=0.385  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |..||.+-+||....  ..+...++.|...+.-+-|+|..+. .|++++.||.+-.||-.+
T Consensus       198 gt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  198 GTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence            567899999998764  3334467899999999999998877 899999999999998653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.36  E-value=3.6e-06  Score=48.53  Aligned_cols=58  Identities=16%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+..+.|.+|.....+...   .+.+|.+.+..+.++.++.  ++++++.|+++++|++.+++
T Consensus       151 gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~  208 (967)
T KOG0974|consen  151 GSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSRE  208 (967)
T ss_pred             ccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeeccccc
Confidence            3445678888876322222   5789999999999999999  99999999999999998764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.35  E-value=7.9e-06  Score=46.65  Aligned_cols=60  Identities=12%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|-.+|.|.++++..++.+.   .++...++|..++|..+|.. ++++++..|.+.+||++..+
T Consensus       219 iG~~~G~ViifNlK~dkil~---sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~kk  278 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKFDKILM---SFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKKK  278 (910)
T ss_pred             EeccCceEEEEEcccCcEEE---EEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCCe
Confidence            36678999999998765443   56644689999999999986 78888888999999997653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.35  E-value=1.5e-06  Score=47.33  Aligned_cols=60  Identities=23%  Similarity=0.436  Sum_probs=46.6

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +++.+|.|.+||.......  ..-.+.|..+...++|+|.+.- ++++.+.|..|.+||.+..
T Consensus       182 ~asd~G~VtlwDv~g~sp~--~~~~~~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s~  241 (673)
T KOG4378|consen  182 IASDKGAVTLWDVQGMSPI--FHASEAHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRSQ  241 (673)
T ss_pred             eeccCCeEEEEeccCCCcc--cchhhhccCCcCcceecCCccc-eEEEecccceEEEeecccc
Confidence            3567899999999764211  1134678999999999998764 7889999999999998754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.32  E-value=1.3e-06  Score=47.55  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+..+.|+|||++....   .+.+++|++.|.++.++-...  ++++++..|-|.+..+.++.
T Consensus        97 gG~~~~Vkiwdl~~kl~---hr~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen   97 GGQSGCVKIWDLRAKLI---HRFLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             cCcCceeeehhhHHHHH---hhhccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecccCc
Confidence            56788999999984322   235789999999999987777  99999999999999887753

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=3.3e-06  Score=49.44  Aligned_cols=61  Identities=10%  Similarity=0.118  Sum_probs=48.6

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeeccccc--EeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|..||.+++||..-......+...+.|+..  |..+.+.+.+-. .+++++.+|.|.+||++.
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEeccc
Confidence            3678999999998654433445567778776  999999887764 699999999999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.31  E-value=5.7e-06  Score=47.45  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ..|+.|++|+..+-...... ..+.+...+..++|+|.|.  +|++++.++.|.+||+.+
T Consensus       207 ~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~--YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  207 PVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNGK--YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccCCeEEEEccCCceeheee-cccccccceEEEEEcCCCc--EEeeeccCCcEEEEeccc
Confidence            35778888887653222111 1223334488999999999  999999999999999984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.24  E-value=1.3e-05  Score=38.92  Aligned_cols=52  Identities=17%  Similarity=0.408  Sum_probs=36.1

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~   63 (65)
                      .+..+.+||++..    .+..+.  ...+..+.|+|.+.  +++.++.   .|.+.+||.++.
T Consensus        81 ~~~~v~lyd~~~~----~i~~~~--~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   81 MPAKVTLYDVKGK----KIFSFG--TQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCcccEEEcCccc----EeEeec--CCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCC
Confidence            3456888888522    122343  45668899999999  7887754   467999999764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.21  E-value=2.2e-05  Score=40.75  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=44.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC-cEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK-TIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~-~i~~w~~~~~~   64 (65)
                      -|+|.|-|+..... .....+.+|.+.|.|++.+.+|.  .++|++..| .|++||..+|.
T Consensus       158 ~GqvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~  215 (346)
T KOG2111|consen  158 TGQVQIVDLASTKP-NAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGT  215 (346)
T ss_pred             cceEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCc
Confidence            47788888754322 12235789999999999999999  999999887 57899998875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.20  E-value=7.7e-06  Score=45.91  Aligned_cols=51  Identities=20%  Similarity=0.476  Sum_probs=41.6

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .|.+|+..+   ......+.+|.-.|+.++|+|++.  +|++.+.|+++.+|....
T Consensus       553 vI~lw~t~~---W~~~~~L~~HsLTVT~l~FSpdg~--~LLsvsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  553 VIRLWNTAN---WLQVQELEGHSLTVTRLAFSPDGR--YLLSVSRDRTVSLYEVQE  603 (764)
T ss_pred             EEEEEeccc---hhhhheecccceEEEEEEECCCCc--EEEEeecCceEEeeeeec
Confidence            477888764   222336889999999999999999  999999999999997643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.19  E-value=2.9e-05  Score=43.08  Aligned_cols=54  Identities=11%  Similarity=0.270  Sum_probs=41.2

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +.+.+|++.......  ..+. ....|.++.|+|..+. +++.|+.+|.|.+||++.+
T Consensus       222 ~~~~vW~~~~p~~Pe--~~~~-~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~  275 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPE--LVLE-SPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKG  275 (555)
T ss_pred             ceEEEEecCCCCCce--EEEe-cCCceeEEEeccCCcc-eEEeeccCceEEEEEccCC
Confidence            368899997642222  2333 4578999999998886 8888899999999999875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=1.3e-05  Score=45.65  Aligned_cols=61  Identities=20%  Similarity=0.386  Sum_probs=48.1

Q ss_pred             ccccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |..||.|.+|.-.. .........++-|-..|.+++|++++.  +|++|+..+.+.+|...+++
T Consensus       223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  223 GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             eccCCcEEEEeccccccccccceEEEecccccceeEEecCCc--eEeecccceEEEEEeecCCC
Confidence            56789999996432 222223346778888999999999999  99999999999999998764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=9.7e-06  Score=45.10  Aligned_cols=56  Identities=14%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             ccccCeEEEEE------CCCCceEeeeEEeeccccc----EeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            2 AYSRHIVQIYP------CNGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         2 ~~~~~~i~i~~------~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      |+.|+++.||-      +.......++..+.+|...    |..+.|+|..+  .+++++.|++|++|.
T Consensus       668 ~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp--WLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  668 GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP--WLFSAGADGTIRLFT  733 (733)
T ss_pred             ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc--eEEecCCCceEEeeC
Confidence            56678888764      3333345666678888654    88899999999  899999999999983

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=1.8e-05  Score=44.30  Aligned_cols=61  Identities=13%  Similarity=0.278  Sum_probs=41.8

Q ss_pred             CccccCeEEEEECCCCceEee-eE---Eeec-ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQ-HL---EIDA-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~-~~---~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.||.|++||..++..... .+   .+.. ...-|+++.|-.++   .+++|.+.|+|.+||...|.
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---TIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---cEEEecCCceEEEEcccCcc
Confidence            377899999999987653331 11   1211 22346777777544   58999999999999987763

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.17  E-value=4.1e-06  Score=47.57  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=46.5

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ..|.++.+||+.++....   ...+|...|+++.|.++.+  +|++.+.|+-|.+|.+.
T Consensus       660 csdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF~nDCk--HlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  660 CSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKFLNDCK--HLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ecCCceEEEEeccchhhh---hhcCcchheeeeeecccch--hheeecCCceEEEEECc
Confidence            467889999998876444   4668999999999999999  99999999999999874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.17  E-value=8.4e-07  Score=50.69  Aligned_cols=58  Identities=24%  Similarity=0.507  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|..++||+.++...+.   .+.+|.+.++.++.+..+.  .+++++.|..|++|.+..+.
T Consensus       208 gsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  208 GSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             cCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEecCCCc
Confidence            6778899999988765444   6889999999999987777  89999999999999988764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.17  E-value=4.6e-05  Score=37.08  Aligned_cols=51  Identities=16%  Similarity=0.402  Sum_probs=36.7

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC------CCcEEEEECC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD------DKTIKVWDAT   61 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------~~~i~~w~~~   61 (65)
                      ..|.+.+||..+.....   .. .| ..+..++|+|++.  +++++..      |..+++|++.
T Consensus       123 ~~G~l~~wd~~~~~~i~---~~-~~-~~~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  123 LNGDLEFWDVRKKKKIS---TF-EH-SDATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CCcEEEEEECCCCEEee---cc-cc-CcEEEEEEcCCCC--EEEEEEeccceeccccEEEEEec
Confidence            35779999998644322   22 23 3468999999999  8888653      6888999885

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.14  E-value=7.5e-06  Score=45.96  Aligned_cols=59  Identities=19%  Similarity=0.470  Sum_probs=44.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCC-cEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~~i~~w~~~   61 (65)
                      |+.+..+.+|..... .......+.+|.+.|+.++|...+. .+++++++.|.+|++|.+.
T Consensus       165 Ggs~~~v~~~s~~~d-~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~  224 (764)
T KOG1063|consen  165 GGSKFVVDLYSSSAD-SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIV  224 (764)
T ss_pred             cCcceEEEEeccCCc-ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEE
Confidence            455666777776543 4555667899999999999976433 3389999999999999875

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.13  E-value=2.6e-06  Score=48.83  Aligned_cols=52  Identities=31%  Similarity=0.592  Sum_probs=42.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++++|..|++|.+..+....   .+.+|++.|++++|+|..      +.+.|+++++||.+
T Consensus       249 aaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~~------sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  249 AASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hcccCceEEEEecCCCchHH---HHhccccceeeeccCccc------cCCCCCceEecccc
Confidence            36788899999998765333   678999999999998754      34789999999987

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.12  E-value=3.9e-06  Score=45.95  Aligned_cols=59  Identities=22%  Similarity=0.335  Sum_probs=39.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.-.++-|||+.... ......+....-...+++.+|+.+  +.++|+.||.|.+||+++.
T Consensus       483 GGeastlsiWDLAapT-prikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  483 GGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             ccccceeeeeeccCCC-cchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccc
Confidence            4445578899986432 111112222222345688999999  9999999999999999864

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.11  E-value=3.5e-05  Score=39.80  Aligned_cols=60  Identities=22%  Similarity=0.227  Sum_probs=44.8

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .|+.|+.+.-||+...+... -...+-|...|.++.-+|..+. ++++|+.|-.|++||.++
T Consensus       183 tGgDD~~l~~~D~R~p~~~i-~~n~kvH~~GV~SI~ss~~~~~-~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  183 TGGDDGSLSCWDIRIPKTFI-WHNSKVHTSGVVSIYSSPPKPT-YIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ecCCCceEEEEEecCCccee-eecceeeecceEEEecCCCCCc-eEEEeccccceeeeehhc
Confidence            36788999999987322111 1124567888999988876555 899999999999999984

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.10  E-value=1.1e-05  Score=42.48  Aligned_cols=61  Identities=13%  Similarity=0.278  Sum_probs=43.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEe--EEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVN--DIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+.+|.|++||+...+....++.+.+|...-.  -+..++++.  .+++++.|...++|.++.|.
T Consensus       317 S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  317 SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             ccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCc
Confidence            45678999999875443334557788854332  234455666  88899999999999998763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.09  E-value=3.7e-05  Score=42.42  Aligned_cols=54  Identities=9%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +|..||+|.+||...+...     +....-....++|||++.  .++.|+..|.+.+||.-
T Consensus       276 lGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  276 LGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEee
Confidence            3678999999998764321     111223457899999999  99999999999999974

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=2.6e-05  Score=43.32  Aligned_cols=57  Identities=23%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|+.||...+|+-.++....   .+.+..+.+.|++-+|...  .+++.+-|.+|++|....
T Consensus       641 sgSddgr~fiwek~tg~i~a---v~~gdssivnciqghP~~~--~latSgiDstiKIwsp~a  697 (758)
T KOG1310|consen  641 SGSDDGRFFIWEKLTGSILA---VIHGDSSIVNCIQGHPRCP--TLATSGIDSTIKIWSPEA  697 (758)
T ss_pred             EecCCCceEEeecCCcceEE---EeeCchhheeeccCCCCCc--eeeeccCccceEEecccC
Confidence            36788999999988876444   5677778889999999998  899999999999998654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.02  E-value=6.6e-05  Score=39.56  Aligned_cols=58  Identities=24%  Similarity=0.373  Sum_probs=44.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+.++.|.+|++.......   .+.....++...+|+|++.. .+.+...+..|.+|.+.+.
T Consensus        67 ~yk~~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             eeccceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccc
Confidence            3457789999987644333   45556678899999999974 6667788999999988654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.00  E-value=3.5e-05  Score=40.15  Aligned_cols=58  Identities=22%  Similarity=0.421  Sum_probs=47.8

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      -+++.+.||.........+...++.|...|.+++|.|..+  .|.+|+.|..-++|....
T Consensus        29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence            3556788998876554666667889999999999999998  799999999999998743

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.98  E-value=0.00021  Score=36.54  Aligned_cols=54  Identities=26%  Similarity=0.444  Sum_probs=43.3

Q ss_pred             ccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecC-CCcEEEEECCC
Q 039404            4 SRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD-DKTIKVWDATN   62 (65)
Q Consensus         4 ~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-~~~i~~w~~~~   62 (65)
                      .|+.+.+|+... ..   ....+..|...+..++|+|.+.  .++.++. ++.+.+|+...
T Consensus       132 ~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         132 LDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             CCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCC
Confidence            377899999875 22   2235778888999999999998  7888775 99999999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.98  E-value=0.00019  Score=36.66  Aligned_cols=55  Identities=22%  Similarity=0.489  Sum_probs=41.8

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.+++|+........   .+.+|...+.+++|+|++.. .+++++.|+.+++||...+
T Consensus       177 ~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~-~~~~~~~d~~i~~wd~~~~  231 (466)
T COG2319         177 DGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWDLSTG  231 (466)
T ss_pred             CCceEEEEcCCCceEE---eeccCCCceEEEEEcCCcce-EEEEecCCCcEEEEECCCC
Confidence            8899999997633232   46668899999999988862 4445589999999987643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.97  E-value=1.5e-05  Score=49.00  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .++.+.+||.........+.  ..|.+.++++++-|..+  ++++|+.+|.+++||++..
T Consensus      2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--llisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             CCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EEEecCCcCcEEEeehHHH
Confidence            45678999975432222222  67888999999999999  9999999999999999754

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.94  E-value=0.0001  Score=28.23  Aligned_cols=31  Identities=10%  Similarity=0.162  Sum_probs=27.7

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ...|..++|+|...  +++.+..+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD--LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence            35688999999999  99999999999999883

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.94  E-value=2.7e-05  Score=43.56  Aligned_cols=59  Identities=22%  Similarity=0.366  Sum_probs=45.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |++|....+|.+.+..  .....+.+|...|.+++|.|.... .+++|+.|..+++|++..+
T Consensus       335 gSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t-~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATT-PVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCC-CceeeccCcceEEEeccCc
Confidence            5678888889886532  222346789999999999987655 6888899999999998654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.93  E-value=0.00012  Score=40.81  Aligned_cols=59  Identities=14%  Similarity=0.164  Sum_probs=44.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|..+.|||....+.+..  .-.+|...|.+++|-|....-.+++|..|..|+++|+..
T Consensus        68 GSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   68 GSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             cCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            66777899999875443332  235899999999999854321788999999999999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.92  E-value=5.4e-05  Score=40.17  Aligned_cols=37  Identities=30%  Similarity=0.518  Sum_probs=30.7

Q ss_pred             eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +-||+.-|..++.-+ +.  .|++++.|+++++||+++|+
T Consensus       190 clGH~eFVS~isl~~-~~--~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  190 CLGHKEFVSTISLTD-NY--LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             ccccHhheeeeeecc-Cc--eeeecCCCCcEEEEecccCC
Confidence            457888888888753 45  68999999999999999885

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.91  E-value=0.00021  Score=37.92  Aligned_cols=55  Identities=9%  Similarity=0.359  Sum_probs=41.0

Q ss_pred             cccC-eEEEEECCCCceEeeeEEeec--ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            3 YSRH-IVQIYPCNGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         3 ~~~~-~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +..| .|++|++.++....   +|+.  ....|..++|+|+++  +|.+.+...+|.++.++.
T Consensus       192 SeKGTVIRVf~v~~G~kl~---eFRRG~~~~~IySL~Fs~ds~--~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  192 SEKGTVIRVFSVPEGQKLY---EFRRGTYPVSIYSLSFSPDSQ--FLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ccCceEEEEEEcCCccEee---eeeCCceeeEEEEEEECCCCC--eEEEecCCCeEEEEEecc
Confidence            3444 47899998776444   3432  134678899999999  999999999999998764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.85  E-value=1.4e-05  Score=44.23  Aligned_cols=53  Identities=21%  Similarity=0.315  Sum_probs=39.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      +++||.+.+.+-...    ..+...+|.+.+.+-.|+|++.  -+++++.||.|++|.-
T Consensus        81 ~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSr  133 (737)
T KOG1524|consen   81 CSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSR  133 (737)
T ss_pred             EcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEec
Confidence            455666655443221    1224678999999999999999  8999999999999964

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=0.00012  Score=39.77  Aligned_cols=62  Identities=16%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +++.|+.+++|.+...... .+..+.-...+|.+..|.|.+.+ .+++++...++..||+.+++
T Consensus       230 vaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~-~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  230 VAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHS-VIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             EecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCce-EEEecccceEEEEeeccccc
Confidence            4678999999998654322 22233334578999999999987 78889999999999998764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=0.00017  Score=38.37  Aligned_cols=52  Identities=15%  Similarity=0.379  Sum_probs=39.3

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      .|..|.|||..++.... .  ..-..+.+.-+.|+|++.  +++++..|+..++|+.
T Consensus       216 gsssi~iWdpdtg~~~p-L--~~~glgg~slLkwSPdgd--~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIP-L--IPKGLGGFSLLKWSPDGD--VLFAATCDAVFRLWQE  267 (445)
T ss_pred             CcceEEEEcCCCCCccc-c--cccCCCceeeEEEcCCCC--EEEEecccceeeeehh
Confidence            35679999998765332 1  112345678899999999  9999999999999954

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.80  E-value=0.00044  Score=38.30  Aligned_cols=32  Identities=9%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +.++.+++|+|++.  +++.++.|+.|+++.+..
T Consensus       447 ~~~ls~v~ysp~G~--~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGA--FLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             CCceEEEEEcCCCC--EEEEecCCCeEEEEEECC
Confidence            67899999999999  999999999999998754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.79  E-value=0.0003  Score=38.92  Aligned_cols=56  Identities=13%  Similarity=0.310  Sum_probs=44.1

Q ss_pred             CccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            1 VAYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      +|+.|+.|.+|.+.... .......+.+  ++|..++|+++++  ++.+.+-|..+..|..
T Consensus       464 vgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~--~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  464 VGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQ--FLVSNSGDYEILYWKP  520 (626)
T ss_pred             EecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCc--eEEeccCceEEEEEcc
Confidence            47889999999986533 3443444444  8999999999999  9999999999999944

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.75  E-value=1.8e-05  Score=43.12  Aligned_cols=56  Identities=16%  Similarity=0.226  Sum_probs=44.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.-|.|.+|+-.++..+.   .+++....|+|+.=+|-.+  +|++++.|..|++|...+
T Consensus       412 GSDCGhIFiW~K~t~eii~---~MegDr~VVNCLEpHP~~P--vLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  412 GSDCGHIFIWDKKTGEIIR---FMEGDRHVVNCLEPHPHLP--VLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             cCccceEEEEecchhHHHH---HhhcccceEeccCCCCCCc--hhhccCCccceeeecCCc
Confidence            4556889999987765332   4556666889999999998  999999999999998743

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.73  E-value=0.00012  Score=38.51  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=38.2

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccc---cEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +-.|..||+...  ..++..+..|..   .-..+...|.+.  +|++++.+|.|++||++.
T Consensus       272 ~dkIl~WDiR~~--~~pv~~L~rhv~~TNQRI~FDld~~~~--~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  272 DDKILCWDIRYS--RDPVYALERHVGDTNQRILFDLDPKGE--ILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CCeEEEEeehhc--cchhhhhhhhccCccceEEEecCCCCc--eeeccCCCccEEEEecCC
Confidence            556889998753  233334555543   333456678888  999999999999999976

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.72  E-value=7.7e-05  Score=41.51  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=41.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |..++||+.....  .+...+..+...+.+++|+|..+. .++++..+|.+.+||+..
T Consensus       419 DW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpa-vF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  419 DWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPA-VFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             cceeEeccccCCC--CcchhhhhccceeeeeEEcCcCce-EEEEEcCCCceehhhhhc
Confidence            7889999976221  222245667777999999998875 777888899999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.68  E-value=0.00037  Score=37.55  Aligned_cols=54  Identities=13%  Similarity=0.068  Sum_probs=37.8

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~   64 (65)
                      +..|.+||..... ..   .+..+...+...+|+|++.  .++..+.   +..|.+||+.+++
T Consensus       183 ~~~i~i~d~dg~~-~~---~lt~~~~~v~~p~wSPDG~--~la~~s~~~~~~~i~i~dl~tg~  239 (429)
T PRK01742        183 PYEVRVADYDGFN-QF---IVNRSSQPLMSPAWSPDGS--KLAYVSFENKKSQLVVHDLRSGA  239 (429)
T ss_pred             eEEEEEECCCCCC-ce---EeccCCCccccceEcCCCC--EEEEEEecCCCcEEEEEeCCCCc
Confidence            4578888876432 22   3455667789999999999  6665543   3479999998763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.68  E-value=0.00034  Score=36.67  Aligned_cols=59  Identities=8%  Similarity=0.031  Sum_probs=46.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|..-++|....+....+...+..++..++++.|+|.+.  .+++++....|.+|-++.
T Consensus        73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEec
Confidence            45666677888855555666666777888999999999999  899999999998886653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.67  E-value=0.00044  Score=36.47  Aligned_cols=39  Identities=21%  Similarity=0.443  Sum_probs=32.8

Q ss_pred             EEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCC
Q 039404           23 LEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNG   63 (65)
Q Consensus        23 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~   63 (65)
                      ..+.+|.+.|+.++|.+++.  .++++. .+..|..||++.-
T Consensus       244 ~llggh~gGvThL~~~edGn--~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCEDGN--KLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             eeecccCCCeeeEEeccCcC--eecccccCCCeEEEEeehhc
Confidence            35678999999999999999  788865 5789999999753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.66  E-value=0.00098  Score=40.29  Aligned_cols=60  Identities=10%  Similarity=0.161  Sum_probs=41.5

Q ss_pred             CccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .|+.||+|++|++..-.    .......+....+++.++...+.+.  .++.++.||.|.+.++..
T Consensus      1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCeEEEEEccc
Confidence            37889999999985321    1111112332356778888888888  788889999999987753

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00082  Score=37.98  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             ccccEe-EEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           28 HVGGVN-DIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        28 ~~~~v~-~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +...+. +++|.|+|+  .++.+-.||+|++.|+.+|.
T Consensus        60 p~~~v~~sL~W~~DGk--llaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   60 PGENVTASLCWRPDGK--LLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             CCCccceeeeecCCCC--EEEEEecCCeEEEEEccCCC
Confidence            344444 999999999  99999999999999998763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.59  E-value=0.0012  Score=36.81  Aligned_cols=34  Identities=24%  Similarity=0.217  Sum_probs=30.1

Q ss_pred             ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .++.+.+++++|++.  .++.|+.||.|.+||...+
T Consensus       258 L~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~~~  291 (545)
T PF11768_consen  258 LPSQVICCARSPSED--KLVLGCEDGSIILYDTTRG  291 (545)
T ss_pred             cCCcceEEecCcccc--eEEEEecCCeEEEEEcCCC
Confidence            456789999999999  8999999999999998765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.00039  Score=40.05  Aligned_cols=58  Identities=17%  Similarity=0.232  Sum_probs=39.9

Q ss_pred             ccccCeEEEEECCCCc-------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|+.+++|.+....       .+.....-.-|..++...+|+.+|.   +++++.+.+|.+||+.+
T Consensus       475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs---lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS---LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             eccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc---EEEEecCCEEEEecCCC
Confidence            4678999999883221       1111111112677889999999998   45667899999999987

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.0012  Score=35.72  Aligned_cols=57  Identities=11%  Similarity=0.063  Sum_probs=43.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.+..|+|.|+++.....   .+..+ ..+++++|..++.. ++..|...|.|.++|.+..
T Consensus       212 asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  212 ASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEEEEccCC
Confidence            4567789999998754332   45555 67899999888775 8888889999999999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.52  E-value=0.0016  Score=34.71  Aligned_cols=40  Identities=15%  Similarity=0.404  Sum_probs=35.1

Q ss_pred             eeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           21 QHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        21 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++..+.+|.+.+.+.+|.+...  .++++..|..+.+||+--
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGG  228 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCc--EEEeccccCceEEEeccC
Confidence            3456789999999999999888  999999999999999853

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.00088  Score=37.69  Aligned_cols=62  Identities=13%  Similarity=0.230  Sum_probs=42.7

Q ss_pred             ccccCeEEEEECCCCceEee---eEEeecccc-----cEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQ---HLEIDAHVG-----GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK   65 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~   65 (65)
                      |..+|.+..||.........   ......|.+     .|+++.|+-++-  .++.|..+|.+.++|+++.++
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~~aVGts~G~v~iyDLRa~~p  262 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--HVAVGTSTGSVLIYDLRASKP  262 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce--eEEeeccCCcEEEEEcccCCc
Confidence            45688999999765331111   111122322     389999987777  899999999999999987643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=97.51  E-value=0.00086  Score=34.57  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404           30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK   65 (65)
Q Consensus        30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~   65 (65)
                      -.+..+..-|+++  .+++++.|+.++++..++.++
T Consensus       252 pGv~gvrIRpD~K--IlATAGWD~RiRVyswrtl~p  285 (323)
T KOG0322|consen  252 PGVSGVRIRPDGK--ILATAGWDHRIRVYSWRTLNP  285 (323)
T ss_pred             CCccceEEccCCc--EEeecccCCcEEEEEeccCCc
Confidence            3567888899999  999999999999999887653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.50  E-value=0.0013  Score=36.04  Aligned_cols=56  Identities=11%  Similarity=0.159  Sum_probs=38.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccc-cEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVG-GVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.+|.|.+|++.......   .+....+ .-..++.++.+.  ++++|+..|.|.+||..+
T Consensus       362 ~~~~GeV~v~nl~~~~~~~---rf~D~G~v~gts~~~S~ng~--ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLH---RFVDDGSVHGTSLCISLNGS--YLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             EcCCceEEEEecCCcceEE---EEeecCccceeeeeecCCCc--eEEeccCcceEEEeccch
Confidence            3457889999998753322   3432211 125567778888  999999999999998654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.49  E-value=0.0038  Score=33.39  Aligned_cols=56  Identities=20%  Similarity=0.236  Sum_probs=38.3

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.+.+.|..+.+...   .+......-..+.|+|++.  +++.++.|+.+.++|+.+.+
T Consensus        14 ~~~~v~viD~~t~~~~~---~i~~~~~~h~~~~~s~Dgr--~~yv~~rdg~vsviD~~~~~   69 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVA---RIPTGGAPHAGLKFSPDGR--YLYVANRDGTVSVIDLATGK   69 (369)
T ss_dssp             GGTEEEEEETTT-SEEE---EEE-STTEEEEEE-TT-SS--EEEEEETTSEEEEEETTSSS
T ss_pred             CCCEEEEEECCCCeEEE---EEcCCCCceeEEEecCCCC--EEEEEcCCCeEEEEECCccc
Confidence            46788899987755343   4544333334578999999  88888899999999998764

...

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=97.47  E-value=0.00084  Score=25.27  Aligned_cols=31  Identities=13%  Similarity=0.146  Sum_probs=25.0

Q ss_pred             cEeEEEecCCCC--cEEEEEecCCCcEEEEECCC
Q 039404           31 GVNDIAFSHPNK--QLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        31 ~v~~~~~~~~~~--~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .+++++|+|.+.  . +|+-....+.+.++|.++
T Consensus         2 AvR~~kFsP~~~~~D-LL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGND-LLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCccc-EEEEEccCCeEEEEEccc
Confidence            578999997544  4 777778889999999984

It contains a characteristic DLL sequence motif.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.46  E-value=0.0009  Score=34.88  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404           19 VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus        19 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +......+.|.-.++-..|+..+++ ++.+|+.|+.+..||.+
T Consensus       155 le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R  196 (339)
T KOG0280|consen  155 LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIR  196 (339)
T ss_pred             eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEec
Confidence            3444467788888888999877766 89999999999999998

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=97.44  E-value=0.00074  Score=37.66  Aligned_cols=32  Identities=31%  Similarity=0.607  Sum_probs=28.8

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .+.|..++|+|+++  +|++.+.|++++++++.+
T Consensus       290 ~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt  321 (636)
T KOG2394|consen  290 EGSINEFAFSPDGK--YLATVSQDGFLRIFDFDT  321 (636)
T ss_pred             cccccceeEcCCCc--eEEEEecCceEEEeeccH
Confidence            34678899999999  999999999999999875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.40  E-value=0.00061  Score=40.03  Aligned_cols=54  Identities=20%  Similarity=0.347  Sum_probs=42.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .+.|.++++|++.+.+...  ...-+|..++..+.|+|.    .+++++.|-+.++|+..
T Consensus       193 ~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  193 VSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             EecCcceeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEecc
Confidence            4678999999998765332  134479999999999864    58899999999999553

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.00067  Score=38.13  Aligned_cols=51  Identities=14%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |.-+.++.+.-+.   ++....+.++++..++.+.  ++++|+.++.+-+||.++.
T Consensus       157 vYRlNLEqGrfL~---P~~~~~~~lN~v~in~~hg--Lla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  157 VYRLNLEQGRFLN---PFETDSGELNVVSINEEHG--LLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eEEEEcccccccc---ccccccccceeeeecCccc--eEEecccCceEEEecchhh
Confidence            4444555443333   4555667889999999998  8999999999999999864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.39  E-value=0.0018  Score=33.55  Aligned_cols=64  Identities=17%  Similarity=0.097  Sum_probs=41.6

Q ss_pred             CccccCeEEEEECCCCceE--eeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+|+++.|||+.....+  .....-+.|.+.++.+.|++.+..=+|+-...-+.+.+.|.++++
T Consensus       220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            3578999999998754311  111123457889999999986652134444455678888887763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.00062  Score=38.42  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=41.5

Q ss_pred             ccccCeEEEEECCCCc-e---EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGD-E---VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|.++++|++.... .   ......+..|+.+|..+.|-.+..  .++++  |+.+.+||.--|
T Consensus       753 ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~giHlWDPFig  814 (1034)
T KOG4190|consen  753 ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGIHLWDPFIG  814 (1034)
T ss_pred             ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcceeeccccc
Confidence            5678999999986421 1   112335678999999999987776  66654  889999997544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.00098  Score=35.74  Aligned_cols=57  Identities=14%  Similarity=0.262  Sum_probs=44.9

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .-+++++||...+.  .++..+.-...++.++...|.+.  +++++...+.+..+|.+.++
T Consensus       224 ~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  224 RYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             cceeEEEecCcccC--cceeEeccccCcceeeeecCCCc--EEEEecccchhheecccCce
Confidence            34678999987543  34445655567889999999999  89999999999999998764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.38  E-value=0.0014  Score=36.83  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=31.6

Q ss_pred             eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404           25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus        25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .++|.+-|.+++|++.+.  ++++++.|-..++||-.
T Consensus       182 WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  182 WRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             EeccCcEEEEeecCcccc--ceeecCCceeEEeeccc
Confidence            467888899999999999  99999999999999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.0034  Score=32.25  Aligned_cols=58  Identities=9%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEee------cc-cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEID------AH-VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~------~~-~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .|+.||++++||..+++....+..++      .| ...|-+++-  ++.  .+.+ +....+.+|.++..
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed--WlvC-GgGp~lslwhLrss  237 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED--WLVC-GGGPKLSLWHLRSS  237 (325)
T ss_pred             ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc--eEEe-cCCCceeEEeccCC
Confidence            37889999999999876544332222      12 223445554  344  4444 44567888988764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.31  E-value=0.00045  Score=41.62  Aligned_cols=37  Identities=27%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             EeecccccEeEEEecCCC-CcEEEEEecCCCcEEEEECCC
Q 039404           24 EIDAHVGGVNDIAFSHPN-KQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .+..|...+..++.++++ .  ++++|+.||+|++|+.+.
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s--~FvsgS~DGtVKvW~~~k 1080 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTS--LFVSGSDDGTVKVWNLRK 1080 (1431)
T ss_pred             hhhhccccccceeecCCCCc--eEEEecCCceEEEeeehh
Confidence            456777778888888777 6  999999999999999864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.31  E-value=0.00051  Score=37.19  Aligned_cols=61  Identities=8%  Similarity=0.045  Sum_probs=43.6

Q ss_pred             ccccCeEEEEECCCCc---eEeeeEEe-ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGD---EVRQHLEI-DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|..+++|.+....   ...++... ..|.+.|.++.|...+.  ++++|+.++++.+.|+++.+
T Consensus        74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~VI~HDiEt~q  138 (609)
T KOG4227|consen   74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTVIKHDIETKQ  138 (609)
T ss_pred             cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcceeEeeecccce
Confidence            5567778899875311   11222111 23568899999998888  99999999999999998753

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.26  E-value=0.00086  Score=35.70  Aligned_cols=58  Identities=9%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             ccccCeEEEEECCCCc--eEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGD--EVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |..+|.|..+|+..+.  ...+...+ -|.+.|++++.-. +++  +|.+.+++++|.+||.+.
T Consensus       270 GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  270 GCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehh
Confidence            4457888888986431  11111122 3777788877655 455  899999999999999874

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.25  E-value=0.00074  Score=35.60  Aligned_cols=30  Identities=13%  Similarity=0.156  Sum_probs=27.9

Q ss_pred             EeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ..++.|++.|.  +++.|+.+|.+.+||+.+.
T Consensus        26 a~~~~Fs~~G~--~lAvGc~nG~vvI~D~~T~   55 (405)
T KOG1273|consen   26 AECCQFSRWGD--YLAVGCANGRVVIYDFDTF   55 (405)
T ss_pred             cceEEeccCcc--eeeeeccCCcEEEEEcccc
Confidence            68999999999  9999999999999999764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.20  E-value=0.0036  Score=33.69  Aligned_cols=36  Identities=19%  Similarity=0.522  Sum_probs=28.9

Q ss_pred             ecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCCC
Q 039404           26 DAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNGV   64 (65)
Q Consensus        26 ~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~~   64 (65)
                      ++| .+|.+++|++++.  .+++++ .|..|.+||+.++.
T Consensus       193 pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             CCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCC
Confidence            344 5799999999998  677765 56899999998874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.18  E-value=0.006  Score=32.69  Aligned_cols=57  Identities=28%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|.++|+.+.+...   .++.- ....+++++++++  +++++ ..++.+.++|.++.+
T Consensus        54 ~~rdg~vsviD~~~~~~v~---~i~~G-~~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   54 ANRDGTVSVIDLATGKVVA---TIKVG-GNPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             EETTSEEEEEETTSSSEEE---EEE-S-SEEEEEEE--TTT--EEEEEEEETTEEEEEETTT--
T ss_pred             EcCCCeEEEEECCcccEEE---EEecC-CCcceEEEcCCCC--EEEEEecCCCceeEecccccc
Confidence            3457899999998876443   34322 3357899999999  66654 578999999987653

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.17  E-value=0.00066  Score=36.04  Aligned_cols=58  Identities=24%  Similarity=0.523  Sum_probs=43.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|..+.+||+...+..  ...+.+|...|..+..-+.-.  .+++++.|+.|-+|+....
T Consensus       215 g~~d~~vi~wdigg~~g~--~~el~gh~~kV~~l~~~~~t~--~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  215 GASDHSVIMWDIGGRKGT--AYELQGHNDKVQALSYAQHTR--QLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ccccCceEEEeccCCcce--eeeeccchhhhhhhhhhhhhe--eeeeccCCCeEEEEeccce
Confidence            567888999998654322  235677888888887766666  7999999999999987653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.13  E-value=0.0086  Score=32.50  Aligned_cols=54  Identities=19%  Similarity=0.222  Sum_probs=34.5

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCc--EEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT--IKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~--i~~w~~~~~   63 (65)
                      +..|.+||+.++.. .   .+..+.+.+...+|+|++.. ++++.+.++.  |.+||+.++
T Consensus       225 ~~~i~~~dl~~g~~-~---~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~  280 (435)
T PRK05137        225 RPRVYLLDLETGQR-E---LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSG  280 (435)
T ss_pred             CCEEEEEECCCCcE-E---EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCC
Confidence            35688888876542 2   23344556678899999983 3445555544  666787665

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.10  E-value=0.011  Score=32.09  Aligned_cols=52  Identities=17%  Similarity=0.173  Sum_probs=35.5

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec---CCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG---DDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~~~~i~~w~~~~~~   64 (65)
                      .|.++|..... ..   .+..+...+...+|+|++.  .++..+   .+..|.+||+.+++
T Consensus       183 ~l~~~d~dg~~-~~---~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~  237 (435)
T PRK05137        183 RLAIMDQDGAN-VR---YLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQ  237 (435)
T ss_pred             EEEEECCCCCC-cE---EEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCc
Confidence            56677764432 22   3555677889999999998  555543   34689999998764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.10  E-value=0.0073  Score=33.00  Aligned_cols=59  Identities=10%  Similarity=0.051  Sum_probs=41.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |..+++|...|+++...+.. ..-....+.|..+..+|...  .+++.+.++.+.+||.+..
T Consensus       123 G~~~~~VI~HDiEt~qsi~V-~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYV-ANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             CCCcceeEeeecccceeeee-ecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCC
Confidence            45667777778776543331 01112245789999999977  8999999999999998754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.10  E-value=0.0035  Score=35.05  Aligned_cols=53  Identities=15%  Similarity=0.332  Sum_probs=39.0

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-----CCcEEEEEecCCCcEEEEECC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-----NKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .++|++|++++++..   ..|.+|.++|++++|...     +.. +|.+...+..+.+|-++
T Consensus       163 s~~ik~~~~~~kevv---~~ftgh~s~v~t~~f~~~~~g~~G~~-vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  163 SRQIKVLDIETKEVV---ITFTGHGSPVRTLSFTTLIDGIIGKY-VLSSAAAERGITVWVVE  220 (541)
T ss_pred             cceEEEEEccCceEE---EEecCCCcceEEEEEEEeccccccce-eeeccccccceeEEEEE
Confidence            478999999986543   479999999999999765     442 44455566777888554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.0028  Score=34.15  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=40.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      |..||.|.|++..+-....  ..-+.|...|+.+.|+|+..  .+++.+.+....+..+
T Consensus       299 GT~dGsVai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKL  353 (398)
T ss_pred             eccCCcEEEEEeceeeeeE--eehhhheeeeeeEEEcCCcC--cccccccCCceeEEEE
Confidence            5678999999987533222  12357888999999999998  7888777877766544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.02  E-value=0.012  Score=30.74  Aligned_cols=55  Identities=16%  Similarity=0.092  Sum_probs=35.5

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ..|..|.+................+.-.+.+|+....  .++++..|+++.+||++.
T Consensus       180 ~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  180 RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             CcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecc
Confidence            3456666654221111112223344557889988777  899999999999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.00  E-value=0.012  Score=30.68  Aligned_cols=56  Identities=9%  Similarity=0.122  Sum_probs=37.6

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEECC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDAT   61 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~   61 (65)
                      ..++.|.+|++.+...+.....+. ..+....++++|+++  +++.+ ..++.+..|++.
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~--~lyv~~~~~~~i~~~~~~   65 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR--HLYVGVRPEFRVLSYRIA   65 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC--EEEEEECCCCcEEEEEEC
Confidence            457889999996432233333343 234567889999998  66554 467889889885

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.99  E-value=0.0005  Score=39.80  Aligned_cols=57  Identities=21%  Similarity=0.411  Sum_probs=42.3

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +....+.+||...+.  .+...+++|...+..++|+.-... .+.+++.|+++.+||+..
T Consensus       177 shg~~i~vwd~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGS--TPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ccCCceEEEeccCCC--cceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccc
Confidence            344568899987653  233367888888888888764333 688999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.90  E-value=0.0091  Score=32.42  Aligned_cols=52  Identities=19%  Similarity=0.137  Sum_probs=34.8

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~   64 (65)
                      .|.+||..... ..   .+..+...+...+|+|++.  .++..+.   +..+.+|++.+++
T Consensus       185 ~l~i~D~~g~~-~~---~lt~~~~~v~~p~wSpDg~--~la~~s~~~~~~~l~~~dl~~g~  239 (433)
T PRK04922        185 ALQVADSDGYN-PQ---TILRSAEPILSPAWSPDGK--KLAYVSFERGRSAIYVQDLATGQ  239 (433)
T ss_pred             EEEEECCCCCC-ce---EeecCCCccccccCCCCCC--EEEEEecCCCCcEEEEEECCCCC
Confidence            57778875432 22   2445566788999999998  6665442   3478899997764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.89  E-value=0.0089  Score=36.26  Aligned_cols=55  Identities=11%  Similarity=0.125  Sum_probs=36.2

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-CCcEEEEEecCCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ...|+|||.........+ .. +....++.++-+.. +.  .++.|..||.++++|.+..
T Consensus      1186 ~r~IRIWDa~~E~~~~di-P~-~s~t~vTaLS~~~~~gn--~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADI-PY-GSSTLVTALSADLVHGN--IIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred             eeEEEEEecccceeEeec-cc-CCCccceeecccccCCc--eEEEeecCCceEEeecccC
Confidence            457999999764322211 11 23344566655443 45  8999999999999998865

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.88  E-value=0.014  Score=32.87  Aligned_cols=56  Identities=18%  Similarity=0.080  Sum_probs=40.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..+..|+........   ..++.+..+..++.+|++.  .++++  .+.|.+||+++++
T Consensus       120 ~~ad~~v~~~~~~~~~~~~---~~~~~~~~~~sl~is~D~~--~l~~a--s~~ik~~~~~~ke  175 (541)
T KOG4547|consen  120 VGADLKVVYILEKEKVIIR---IWKEQKPLVSSLCISPDGK--ILLTA--SRQIKVLDIETKE  175 (541)
T ss_pred             cCCceeEEEEecccceeee---eeccCCCccceEEEcCCCC--EEEec--cceEEEEEccCce
Confidence            3456667777776543333   5666677788899999998  77776  4689999998764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=96.88  E-value=0.0087  Score=33.61  Aligned_cols=54  Identities=17%  Similarity=0.324  Sum_probs=37.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC------CCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD------DKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------~~~i~~w~~~~   62 (65)
                      |..-|.+-+||..+.+...   .+..  ....-+.|+|++.  +++++..      |+.+++|.+..
T Consensus       332 GNL~G~mEvwDv~n~K~i~---~~~a--~~tt~~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  332 GNLPGDMEVWDVPNRKLIA---KFKA--ANTTVFEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             CCCCCceEEEeccchhhcc---cccc--CCceEEEEcCCCc--EEEEEeccccEEecCCeEEEEecC
Confidence            3445788999987744332   3332  3346789999999  8888754      57888898754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.82  E-value=0.0062  Score=31.55  Aligned_cols=32  Identities=9%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .+.|..|+.+|++.  .|++...+|.+.+|++-+
T Consensus       229 ~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  229 QDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             CCceEEEEECCCCC--EEEEEEcCCeEEEEecCc
Confidence            46789999999999  999999999999998854

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.81  E-value=0.028  Score=30.62  Aligned_cols=52  Identities=15%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEE--ECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVW--DATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w--~~~~~   63 (65)
                      ..|.+||+.++.. ..+..+.++   ....+|+|++.  .++.+ ..++.+.+|  |+.++
T Consensus       228 ~~i~i~dl~tg~~-~~l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        228 SQLVVHDLRSGAR-KVVASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGG  282 (429)
T ss_pred             cEEEEEeCCCCce-EEEecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCC
Confidence            4688899876532 212223333   34689999998  55554 467766555  55443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.80  E-value=0.016  Score=30.16  Aligned_cols=55  Identities=15%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             cCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCCCCcEEEE-EecCCCcEEEEECCC
Q 039404            5 RHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDKTIKVWDATN   62 (65)
Q Consensus         5 ~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~~i~~w~~~~   62 (65)
                      ++.+.+|++.... .......+.+ ......++++|++.  +++ +...++.|.+||+.+
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNR--TLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCC--EEEEeeCCCCEEEEEEECC
Confidence            5778888886321 1111112222 22346788999998  554 455679999999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.79  E-value=0.03  Score=31.48  Aligned_cols=57  Identities=25%  Similarity=0.381  Sum_probs=42.3

Q ss_pred             ccccC-eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRH-IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |..|+ .+-+|+..++...    .+...-+.|.++..+++++  .++.+.....+-+.|+.+|+
T Consensus       377 gt~dgD~l~iyd~~~~e~k----r~e~~lg~I~av~vs~dGK--~~vvaNdr~el~vididngn  434 (668)
T COG4946         377 GTNDGDKLGIYDKDGGEVK----RIEKDLGNIEAVKVSPDGK--KVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             eccCCceEEEEecCCceEE----EeeCCccceEEEEEcCCCc--EEEEEcCceEEEEEEecCCC
Confidence            45566 6788888775422    3455567899999999999  88887777777777888874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.76  E-value=0.0078  Score=33.48  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=44.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+++++-.+...........+..|.++|..++.-|..+. .+.+++.|+.+.-.|++++.
T Consensus       205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~  266 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDV  266 (559)
T ss_pred             ccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCC
Confidence            456777777555332222223345568899999999998876 78999999999999988764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.72  E-value=0.031  Score=30.43  Aligned_cols=54  Identities=17%  Similarity=0.164  Sum_probs=32.6

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~~   64 (65)
                      ..|.+|++.++...    .+....+.....+|+|++.. ++++.+.++  .|.+||+.+++
T Consensus       228 ~~l~~~dl~~g~~~----~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        228 SAIYVQDLATGQRE----LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             cEEEEEECCCCCEE----EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCC
Confidence            45778888665422    12223333457899999983 334444444  68888987653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.64  E-value=0.017  Score=33.42  Aligned_cols=60  Identities=8%  Similarity=0.030  Sum_probs=42.4

Q ss_pred             CccccCeEEEEECCCCceEee---eEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|...+.|.++.++.......   ...-+.|...|++++|++++.  .+++|...|.|.+-.+..
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence            356678888888765321111   112245778999999999999  899999999988765543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.0022  Score=38.45  Aligned_cols=35  Identities=23%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      -.++|.+++|+.++.  .++.|-.+|.|.+||...++
T Consensus       129 v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k  163 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAK  163 (1206)
T ss_pred             cCCcceeeEecCCCc--eeccccCCCcEEEEEccCCc
Confidence            357899999999999  89899999999999998754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.52  E-value=0.045  Score=29.34  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=32.7

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC--CcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD--KTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~--~~i~~w~~~~~   63 (65)
                      ..|.+|++.++....    +..+...+...+|+|++.. ++++.+.+  ..+.+|++.++
T Consensus       214 ~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~i~~~d~~~~  268 (417)
T TIGR02800       214 PEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPDIYVMDLDGK  268 (417)
T ss_pred             cEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCccEEEEECCCC
Confidence            468888887653221    2233444567899999983 33444444  35888888765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.48  E-value=0.053  Score=29.65  Aligned_cols=53  Identities=19%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEE-EecCCC--cEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDK--TIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~--~i~~w~~~~~~   64 (65)
                      ..+.+|++.++.. ..   +....+......|+|++.  .++ +...++  .|.+||+.+++
T Consensus       223 ~~i~i~dl~~G~~-~~---l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg~  278 (429)
T PRK03629        223 SALVIQTLANGAV-RQ---VASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQ  278 (429)
T ss_pred             cEEEEEECCCCCe-EE---ccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCCC
Confidence            3566777765432 21   212222344689999998  554 334444  58888987653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.43  E-value=0.0097  Score=34.96  Aligned_cols=54  Identities=15%  Similarity=0.206  Sum_probs=36.4

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      +|+.+|.|++||-....+..   .+++-..+|.+++.+.+|.. +|+||  +..+.+.+.
T Consensus       593 vgs~~G~IRLyd~~g~~AKT---~lp~lG~pI~~iDvt~DGkw-ilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  593 VGSNKGDIRLYDRLGKRAKT---ALPGLGDPIIGIDVTADGKW-ILATC--KTYLLLIDT  646 (794)
T ss_pred             EEeCCCcEEeecccchhhhh---cCCCCCCCeeEEEecCCCcE-EEEee--cceEEEEEE
Confidence            47889999999953322122   46676789999999999993 44443  445555553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02889 tolB translocation protein TolB; Provisional

Probab=96.38  E-value=0.043  Score=29.90  Aligned_cols=38  Identities=13%  Similarity=0.025  Sum_probs=27.0

Q ss_pred             eecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404           25 IDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV   64 (65)
Q Consensus        25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~   64 (65)
                      +..+...+...+|+|++.  .++..+.   ...|.+||+.+++
T Consensus       191 l~~~~~~v~~p~wSPDG~--~la~~s~~~~~~~I~~~dl~~g~  231 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGT--KLAYVSFESKKPVVYVHDLATGR  231 (427)
T ss_pred             eccCCCCcccceEcCCCC--EEEEEEccCCCcEEEEEECCCCC
Confidence            344566788999999998  5554432   3469999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.37  E-value=0.014  Score=30.30  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=25.5

Q ss_pred             eEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           33 NDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        33 ~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +.++|+|++.  +++.+...|+|+++|+..
T Consensus        47 Rkl~WSpD~t--lLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen   47 RKLAWSPDCT--LLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             eEEEECCCCc--EEEEEcCCCeEEEEeccc
Confidence            6799999999  999999999999999864

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.34  E-value=0.0064  Score=35.62  Aligned_cols=39  Identities=23%  Similarity=0.529  Sum_probs=34.8

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+.+|...+..+.|+|..+. .+++++-|-.+..||.++.
T Consensus       109 ~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             EEecCccceeccccCCCCCc-ceeeccccccceeeeccCC
Confidence            46789999999999998886 8999999999999999865

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.32  E-value=0.044  Score=33.06  Aligned_cols=52  Identities=12%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|.+.+|...+.....   ....|..++..+.|++++.  .+.++..-|.+.+|.+.
T Consensus        80 ~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   80 MGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence            4556677665432111   2346888999999999999  99999999999999764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.22  E-value=0.018  Score=33.93  Aligned_cols=61  Identities=13%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             ccccCeEEEEECCCCc------------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGD------------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.||.+++..+.+..            .+.....+.+|...|.-+.|+...+  .+.+...+|.|.+|-+-.|.
T Consensus        32 gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSDt~GlIiVWmlykgs  104 (1189)
T KOG2041|consen   32 GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSDTSGLIIVWMLYKGS  104 (1189)
T ss_pred             ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccCCCceEEEEeeeccc
Confidence            5678888887654321            1222345789999999999997777  89999999999999876553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.16  E-value=0.0065  Score=33.64  Aligned_cols=57  Identities=12%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +..|.++.-|+.++....   .+....+.+..++-+|.+.  .+-+|...|+|.+|.....+
T Consensus       228 ~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  228 SEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             ccCCceEEEeechhhhhH---HHHccCCccchhhcCCccc--eEEEcCCCceEEecCCCCcc
Confidence            334555555665544222   2333456677888899998  89999999999999887643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=96.11  E-value=0.089  Score=28.74  Aligned_cols=50  Identities=12%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ..|.+||+.++....    +....+......|+|++.. ++++.+.++...+|.+
T Consensus       220 ~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        220 PVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQIYTV  269 (427)
T ss_pred             cEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceEEEE
Confidence            357888887654221    2222344567899999983 3345667776666643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.01  E-value=0.025  Score=30.63  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=29.8

Q ss_pred             eecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404           25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus        25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      .-+|-+.+..++++|+.+  +++++..|..|++-.+
T Consensus       147 ~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRY  180 (390)
T ss_pred             hhhhhhhhheeeecCCCC--EEEEecCCceEEEEec
Confidence            457888999999999998  9999999999988544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=95.98  E-value=0.18  Score=30.94  Aligned_cols=59  Identities=10%  Similarity=0.131  Sum_probs=38.2

Q ss_pred             ccCeEEEEECCCCceEeeeEE----------eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLE----------IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.|++||..++........          ..+.-.....+++++++.  ++++-+.++.|++||+.+++
T Consensus       823 ~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~--lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        823 YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR--LFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC--EEEEECCCCEEEEEECCCCc
Confidence            356788888765432211100          001112456789999998  78888889999999998763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.89  E-value=0.028  Score=29.31  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=26.1

Q ss_pred             cEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           31 GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+.+++-+|..+. .+++|+.||.+.+||.++.
T Consensus       181 ~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~  212 (319)
T KOG4714|consen  181 AVTALCSHPAQQH-LVCCGTDDGIVGLWDARNV  212 (319)
T ss_pred             cchhhhCCccccc-EEEEecCCCeEEEEEcccc
Confidence            4788888887665 6778889999999998864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=95.69  E-value=0.15  Score=27.94  Aligned_cols=52  Identities=10%  Similarity=0.097  Sum_probs=33.1

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec---CCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG---DDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~~~~i~~w~~~~~~   64 (65)
                      .|.++|...... .   .+..+...+...+|+|++.  .++..+   .+..+.+|++.+|+
T Consensus       180 ~l~~~d~dg~~~-~---~lt~~~~~~~~p~wSPDG~--~la~~s~~~g~~~i~i~dl~~G~  234 (429)
T PRK03629        180 ELRVSDYDGYNQ-F---VVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGA  234 (429)
T ss_pred             eEEEEcCCCCCC-E---EeecCCCceeeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCC
Confidence            466677654321 1   2334556788999999998  555432   34578889987763

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.66  E-value=0.14  Score=27.48  Aligned_cols=52  Identities=17%  Similarity=0.148  Sum_probs=32.7

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~   64 (65)
                      .|.++|..... ..   .+..+...+...+|+|++.  .++....   ...+.+|++.+++
T Consensus       171 ~l~~~d~~g~~-~~---~l~~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~  225 (417)
T TIGR02800       171 ELQVADYDGAN-PQ---TITRSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQ  225 (417)
T ss_pred             eEEEEcCCCCC-CE---EeecCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCC
Confidence            45566654322 11   2334555678889999999  6655443   2579999987763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.66  E-value=0.051  Score=31.94  Aligned_cols=54  Identities=13%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      +|++|+.+++|.-+. ..+.   ........|+.++..|.++  .++.|+.||++-.+++
T Consensus       239 iGGsdk~L~~fTR~G-vrLG---Tvg~~D~WIWtV~~~PNsQ--~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRDG-VRLG---TVGEQDSWIWTVQAKPNSQ--YVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EccCCCceEEEeecC-eEEe---eccccceeEEEEEEccCCc--eEEEEEccCeeehhhh
Confidence            367788888877542 2222   3333457899999999999  8999999999988775

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=95.61  E-value=0.031  Score=33.60  Aligned_cols=54  Identities=30%  Similarity=0.442  Sum_probs=36.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---------CCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---------DKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------~~~i~~w~~~~   62 (65)
                      |...|.|.+-|..+   ...+..+.+|.+.+..++.  .++  +|++|+.         |.++.+||++.
T Consensus       193 G~t~G~V~LrD~~s---~~~iht~~aHs~siSDfDv--~GN--lLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  193 GDTRGTVFLRDPNS---FETIHTFDAHSGSISDFDV--QGN--LLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             ecccceEEeecCCc---Cceeeeeeccccceeeeec--cCC--eEEEeecccccccccccchhhhhhhhh
Confidence            44556666666654   3344578899988877665  566  7777753         56788888875

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.56  E-value=0.069  Score=29.99  Aligned_cols=31  Identities=23%  Similarity=0.577  Sum_probs=23.0

Q ss_pred             EeEEEecC----CCCcEEEEEecCCCcEEEEECCCCC
Q 039404           32 VNDIAFSH----PNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        32 v~~~~~~~----~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +...+.+.    ...  ++++.+.|+.+++||+.++.
T Consensus       217 ~~~~~~~~~~~~~~~--~l~tl~~D~~LRiW~l~t~~  251 (547)
T PF11715_consen  217 AASLAVSSSEINDDT--FLFTLSRDHTLRIWSLETGQ  251 (547)
T ss_dssp             EEEEEE-----ETTT--EEEEEETTSEEEEEETTTTC
T ss_pred             cceEEEecceeCCCC--EEEEEeCCCeEEEEECCCCe
Confidence            44455555    455  89999999999999998874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.53  E-value=0.17  Score=27.50  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CC--CcEEEEECCCCC
Q 039404            8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DD--KTIKVWDATNGV   64 (65)
Q Consensus         8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~--~~i~~w~~~~~~   64 (65)
                      |.++|..... ..   .+..+...+...+|+|++.  .++..+ .+  ..+.+|++.+++
T Consensus       181 l~~~d~~g~~-~~---~l~~~~~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~  234 (430)
T PRK00178        181 LQRSDYDGAR-AV---TLLQSREPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGR  234 (430)
T ss_pred             EEEECCCCCC-ce---EEecCCCceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCC
Confidence            5555654332 11   2334556778899999998  555433 22  468888987763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.45  E-value=0.053  Score=31.22  Aligned_cols=60  Identities=13%  Similarity=0.116  Sum_probs=44.2

Q ss_pred             cccCeEEEEECCCCceEeeeEEe--ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +...+++++|..........+..  .+.+..+++++.-+.++  .++.+-.+|.+.+.|.++|+
T Consensus       848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN--~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN--KLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc--hhhHHhcCCcEEEEecCCCc
Confidence            44567888888765544432222  33456688999999898  89998899999999999885

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.30  E-value=0.21  Score=27.16  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~~   64 (65)
                      .|.+|++.++.. .   .+....+.+....|+|++.. ++++...++  .|.++|+.+++
T Consensus       224 ~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~  278 (430)
T PRK00178        224 RIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQ  278 (430)
T ss_pred             EEEEEECCCCCE-E---EccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCC
Confidence            466677765432 1   12222233456899999983 333444444  57777887653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.95  E-value=0.31  Score=27.01  Aligned_cols=53  Identities=15%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCc--EEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT--IKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~--i~~w~~~~~~   64 (65)
                      .|.++|+.++.. ..   +....+......|+|++.. ++++...++.  |.++|+.+++
T Consensus       243 ~L~~~dl~tg~~-~~---lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        243 EIFVQDIYTQVR-EK---VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             EEEEEECCCCCe-EE---ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEEEEEECCCCC
Confidence            466677665432 11   2111222346799999994 3344455554  6677876653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=0.075  Score=30.33  Aligned_cols=54  Identities=9%  Similarity=0.199  Sum_probs=36.0

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      +|+.+|.|++||--......   .+++-..+|..+..+.++.  ++++.+ +.++.+.++
T Consensus       446 vgS~~GdIRLYdri~~~AKT---AlPgLG~~I~hVdvtadGK--wil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  446 VGSLKGDIRLYDRIGRRAKT---ALPGLGDAIKHVDVTADGK--WILATC-KTYLLLIDT  499 (644)
T ss_pred             EeecCCcEEeehhhhhhhhh---cccccCCceeeEEeeccCc--EEEEec-ccEEEEEEE
Confidence            47888999999963221122   4677788999999999999  554433 445555544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=94.55  E-value=0.13  Score=27.94  Aligned_cols=29  Identities=17%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             ccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404           30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus        30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      -.+..+.|+|.++  +++.|+.|+.+++.+.
T Consensus       211 lG~k~v~wsP~~q--flavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQ--FLAVGSYDQMLRVLNH  239 (447)
T ss_pred             cceeEEEeccccc--eEEeeccchhhhhhce
Confidence            4688999999999  9999999998887554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.46  E-value=0.39  Score=26.06  Aligned_cols=55  Identities=24%  Similarity=0.381  Sum_probs=37.1

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.|-++|..+.+...   .+.. ...+..++++|+++..++.+...++.+.+.|..+++
T Consensus       279 ~~V~ViD~~t~kvi~---~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       279 RFLFVVDAKTGKRLR---KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CEEEEEECCCCeEEE---EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            357778877655333   2321 346789999999884144455578889999987764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.46  E-value=0.37  Score=25.69  Aligned_cols=54  Identities=15%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             cCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEEC
Q 039404            5 RHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDA   60 (65)
Q Consensus         5 ~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~   60 (65)
                      ...|.+|++.. ...+..+.........-+.+.++|++.  +++.+ ..++.|.+|++
T Consensus       266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~--~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR--YLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS--EEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC--EEEEEecCCCeEEEEEE
Confidence            35678888832 222443334443344468999999999  56554 56778988865

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=0.011  Score=32.76  Aligned_cols=59  Identities=22%  Similarity=0.209  Sum_probs=41.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC-CCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD-DKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-~~~i~~w~~~~   62 (65)
                      ++.||.++.|--..-.....+..+..|.+.+..++.+.++-  ++.|.+. |..++++|+.+
T Consensus        26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen   26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEeec
Confidence            45677777776433122333334667788888888888888  8888676 99999998865

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=93.97  E-value=0.84  Score=27.97  Aligned_cols=29  Identities=7%  Similarity=0.147  Sum_probs=23.3

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ...|.+++|+|++.  .++....++++.+.+
T Consensus       120 d~GI~a~~WSPD~E--lla~vT~~~~l~~mt  148 (928)
T PF04762_consen  120 DSGILAASWSPDEE--LLALVTGEGNLLLMT  148 (928)
T ss_pred             cCcEEEEEECCCcC--EEEEEeCCCEEEEEe
Confidence            46799999999999  777777777777763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=93.97  E-value=0.18  Score=30.28  Aligned_cols=58  Identities=9%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecC---CCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .-.|.|-+||...+....   .+..+.+++..++|-+   +... +++.-....++.+|+..+|+
T Consensus        86 D~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~  146 (1062)
T KOG1912|consen   86 DISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGE  146 (1062)
T ss_pred             cccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCc
Confidence            345778899986544333   4666778888887764   3323 66677778899999988875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.76  E-value=0.63  Score=25.85  Aligned_cols=36  Identities=17%  Similarity=0.096  Sum_probs=24.0

Q ss_pred             cccccEeEEEecCCCCcEEEEEec-CC--CcEEEEECCCCC
Q 039404           27 AHVGGVNDIAFSHPNKQLYVITCG-DD--KTIKVWDATNGV   64 (65)
Q Consensus        27 ~~~~~v~~~~~~~~~~~~~l~s~~-~~--~~i~~w~~~~~~   64 (65)
                      .....+....|+|++.  .++..+ .+  ..|.++|+.+++
T Consensus       215 ~~~~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~  253 (448)
T PRK04792        215 RSPEPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQV  253 (448)
T ss_pred             cCCCcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCC
Confidence            3445677889999998  555432 23  357788887654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.76  E-value=0.11  Score=28.74  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+..+...|+.++|+|.... ++..++.+..|.+.|+++.
T Consensus       188 ~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~  226 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETS  226 (463)
T ss_pred             cccccchhhhhhccCccccc-eeeeeccCceEEEEecccc
Confidence            34567778999999998764 6778899999999998764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=93.63  E-value=0.6  Score=25.82  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=22.6

Q ss_pred             ccEeEEEecCCCCcEEEEEecC-C--CcEEEEECCCCC
Q 039404           30 GGVNDIAFSHPNKQLYVITCGD-D--KTIKVWDATNGV   64 (65)
Q Consensus        30 ~~v~~~~~~~~~~~~~l~s~~~-~--~~i~~w~~~~~~   64 (65)
                      ..+....|+|++.  .++.... +  ..|.+||+.+++
T Consensus       327 ~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        327 RNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             CCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCC
Confidence            4456789999999  5554432 2  468888987664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.38  E-value=0.86  Score=26.17  Aligned_cols=53  Identities=13%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC----cEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK----TIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~----~i~~w~~~~~   63 (65)
                      ..+-+.|+.++....   .-+...+-|..++|+|.+.  +++-+-.++    .|+++|..++
T Consensus       423 ~el~vididngnv~~---idkS~~~lItdf~~~~nsr--~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         423 FELWVIDIDNGNVRL---IDKSEYGLITDFDWHPNSR--WIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             eEEEEEEecCCCeeE---ecccccceeEEEEEcCCce--eEEEecCcceeeeeEEEEecCCC
Confidence            345567777765322   2334567899999999998  787766554    6777777664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.25  E-value=1.2  Score=27.98  Aligned_cols=48  Identities=15%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeeccc---ccEeEEEecCCCCcEEEEEecCCCc
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHV---GGVNDIAFSHPNKQLYVITCGDDKT   54 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~~~~   54 (65)
                      |-.+|.|.+||...++...   .+..+.   ..+..+.+..++.  .+.++...|.
T Consensus       148 G~~~G~V~v~D~~~~k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs  198 (1206)
T KOG2079|consen  148 GLGDGHVTVWDMHRAKILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS  198 (1206)
T ss_pred             ccCCCcEEEEEccCCccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc
Confidence            5668899999998765444   233332   2345555555666  6777766665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.95  E-value=0.84  Score=24.85  Aligned_cols=51  Identities=20%  Similarity=0.334  Sum_probs=32.3

Q ss_pred             EEEEECCCCceEeee--EEeecccccEeEEEecCCCCcEEEE-EecCCCcEEEEECCC
Q 039404            8 VQIYPCNGGDEVRQH--LEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDKTIKVWDATN   62 (65)
Q Consensus         8 i~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~~i~~w~~~~   62 (65)
                      |.+|++..+. +.+.  ..++ ....-+.+.|+|.++  +.. .+..+++|-+|.+..
T Consensus       169 i~~y~~~dg~-L~~~~~~~v~-~G~GPRHi~FHpn~k--~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         169 IFLYDLDDGK-LTPADPAEVK-PGAGPRHIVFHPNGK--YAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             EEEEEcccCc-cccccccccC-CCCCcceEEEcCCCc--EEEEEeccCCEEEEEEEcC
Confidence            5567766443 2211  1122 234458999999999  544 467899999998865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=92.91  E-value=0.34  Score=31.93  Aligned_cols=57  Identities=16%  Similarity=0.265  Sum_probs=41.5

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +|+.||.+++|.-..+......+. -+ ++.+..+.|+..|.  ....+..||.+.+|...
T Consensus      2225 tgs~dgsv~~~~w~~~~~v~~~rt-~g-~s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRT-AG-NSRVTRSRFNHQGN--KFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ecCCCceEEEEeccCCCeEEEeec-cC-cchhhhhhhcccCC--ceeeeccCCceeecccC
Confidence            478899999998765443332111 12 37788899999888  78888889999999765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.86  E-value=0.82  Score=24.51  Aligned_cols=20  Identities=10%  Similarity=0.230  Sum_probs=16.6

Q ss_pred             EEEEecCCCcEEEEECCCCC
Q 039404           45 YVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        45 ~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.++.++.+.++|..+|+
T Consensus       322 ~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       322 YLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             EEEEEeCCCEEEEEECCCCC
Confidence            67778889999999988775

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.76  E-value=0.3  Score=25.07  Aligned_cols=12  Identities=25%  Similarity=0.803  Sum_probs=7.0

Q ss_pred             cCCCcEEEEECC
Q 039404           50 GDDKTIKVWDAT   61 (65)
Q Consensus        50 ~~~~~i~~w~~~   61 (65)
                      +.+..++.|++.
T Consensus       166 S~d~~~k~W~ve  177 (238)
T KOG2444|consen  166 SHDRVLKKWNVE  177 (238)
T ss_pred             ccchhhhhcchh
Confidence            555666666654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.44  E-value=0.46  Score=29.35  Aligned_cols=39  Identities=18%  Similarity=0.247  Sum_probs=33.9

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+..|....+|++|+-...  +++.|+..|.|+++++.+|.
T Consensus      1096 ~frd~~~~fTc~afs~~~~--hL~vG~~~Geik~~nv~sG~ 1134 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN--HLAVGSHAGEIKIFNVSSGS 1134 (1516)
T ss_pred             hhhccccceeeEEeecCCc--eEEeeeccceEEEEEccCcc
Confidence            4566777889999998888  99999999999999998874

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.35  E-value=0.51  Score=23.84  Aligned_cols=24  Identities=17%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             CCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           39 HPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        39 ~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..+.  ++.+...+|.+++||+.+++
T Consensus        20 ~~~~--~Ll~iT~~G~l~vWnl~~~k   43 (219)
T PF07569_consen   20 CNGS--YLLAITSSGLLYVWNLKKGK   43 (219)
T ss_pred             eCCC--EEEEEeCCCeEEEEECCCCe
Confidence            3566  88888899999999998764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=91.67  E-value=1.3  Score=24.18  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=33.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-c---------CCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-G---------DDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~---------~~~~i~~w~~~~~~   64 (65)
                      +.|.+.|..+.+...   .+..-..+ ..+ ++|+++  .++.+ .         .+..|.+||..+.+
T Consensus        27 ~~v~ViD~~~~~v~g---~i~~G~~P-~~~-~spDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        27 TQVYTIDGEAGRVLG---MTDGGFLP-NPV-VASDGS--FFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             ceEEEEECCCCEEEE---EEEccCCC-cee-ECCCCC--EEEEEeccccccccCCCCCEEEEEECccCc
Confidence            678888887654333   23322222 234 899999  45444 4         47899999998764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=91.44  E-value=0.94  Score=27.37  Aligned_cols=55  Identities=9%  Similarity=0.109  Sum_probs=31.0

Q ss_pred             ccccCeEEEEECCCCc-eEeeeEEee--cccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGGD-EVRQHLEID--AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      |-++..+..||..-.. ... ....+  .......|++-...|   +++.|+.+|.|+++|-
T Consensus       548 Gls~n~lfriDpR~~~~k~v-~~~~k~Y~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~  605 (794)
T PF08553_consen  548 GLSDNSLFRIDPRLSGNKLV-DSQSKQYSSKNNFSCFATTEDG---YIAVGSNKGDIRLYDR  605 (794)
T ss_pred             EECCCceEEeccCCCCCcee-eccccccccCCCceEEEecCCc---eEEEEeCCCcEEeecc
Confidence            3456677788865321 111 00111  122334555554443   6999999999999973

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.10  E-value=1.9  Score=24.89  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=28.4

Q ss_pred             cccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404           27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus        27 ~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ...++|.++.|+++++  .++..-.+..|.+.++.
T Consensus        64 ~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             cCCCceeEEEeccCcc--eEEEEecCceEEEEecC
Confidence            3457899999999999  89998899999998873

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.71  E-value=0.43  Score=16.90  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=18.4

Q ss_pred             cccEeEEEecCCCCcEEEEEecCC--CcEEEE
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDD--KTIKVW   58 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~--~~i~~w   58 (65)
                      ...-....|+|+++. +++++..+  +...||
T Consensus         8 ~~~~~~p~~SpDGk~-i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKY-IYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSE-EEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCE-EEEEecCCCCCCcCEE
Confidence            344577899999985 55555555  655555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.69  E-value=1.4  Score=25.68  Aligned_cols=16  Identities=19%  Similarity=0.511  Sum_probs=14.6

Q ss_pred             EEEEecCCCcEEEEEC
Q 039404           45 YVITCGDDKTIKVWDA   60 (65)
Q Consensus        45 ~l~s~~~~~~i~~w~~   60 (65)
                      +++.++.+|.|+++|-
T Consensus       443 ~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  443 YIVVGSLKGDIRLYDR  458 (644)
T ss_pred             eEEEeecCCcEEeehh
Confidence            7999999999999975

>PRK01029 tolB translocation protein TolB; Provisional

Probab=90.40  E-value=1.9  Score=23.93  Aligned_cols=53  Identities=8%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC--CCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD--DKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--~~~i~~w~~~~~   63 (65)
                      ..|.+||+.++...    .+......+....|+|++.. ++++...  ...+.++++..+
T Consensus       351 ~~I~v~dl~~g~~~----~Lt~~~~~~~~p~wSpDG~~-L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        351 RQICVYDLATGRDY----QLTTSPENKESPSWAIDSLH-LVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             cEEEEEECCCCCeE----EccCCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCC
Confidence            35777887765422    22222234567899999983 3334332  356777887665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=90.23  E-value=0.46  Score=26.03  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=26.6

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +..|++..|+|...+ .+.-.++.|+|++-|++.
T Consensus       213 teVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  213 TEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             HHHHhhhccCHhHcc-EEEEecCCCcEEEeechh
Confidence            346788899998765 677778899999999874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=90.16  E-value=1.9  Score=23.55  Aligned_cols=58  Identities=19%  Similarity=0.422  Sum_probs=35.1

Q ss_pred             cCeEEEEECCCCceEeeeEEeeccccc----------EeEEEecCCCCcEEEEEecCC-CcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGG----------VNDIAFSHPNKQLYVITCGDD-KTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~l~s~~~~-~~i~~w~~~~~~   64 (65)
                      .+.|.++.++....+........|.+.          +....+.|++.  +++++... -.|.++++..|.
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~~y~~~dg~  178 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIFLYDLDDGK  178 (346)
T ss_pred             CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEEEEEcccCc
Confidence            356777777543222222122233333          67889999999  88876543 477888887653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=89.79  E-value=1.5  Score=21.68  Aligned_cols=57  Identities=9%  Similarity=0.010  Sum_probs=30.9

Q ss_pred             ccCeEEEEECCCCceEeeeEEee--ccc-ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEID--AHV-GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.+..+|..++..........  ... .......+  .+.  .++.+..++.+..+|.++|+
T Consensus        84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGD--RLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETT--EEEEEETCSEEEEEETTTTE
T ss_pred             ceeeeEecccCCcceeeeeccccccccccccccCceE--ecC--EEEEEeccCcEEEEecCCCc
Confidence            45677788877766433211111  011 01112222  255  56777778899999988874

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.61  E-value=1.8  Score=26.25  Aligned_cols=50  Identities=16%  Similarity=0.132  Sum_probs=30.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-----CCcEEEEEecCCCcEEE
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-----NKQLYVITCGDDKTIKV   57 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~~~~~i~~   57 (65)
                      +|+.||.+.|..+.+.....   .+ .-..++..++++|+     ..  .+++|+..| +.+
T Consensus        88 sCS~DGkv~I~sl~~~~~~~---~~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL  142 (846)
T KOG2066|consen   88 SCSDDGKVVIGSLFTDDEIT---QY-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVL  142 (846)
T ss_pred             EecCCCcEEEeeccCCccce---eE-ecCCcceeEEeccchhhhhhh--heeecCcce-EEE
Confidence            36778887777765543222   11 22456788888886     33  567777766 444

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=89.49  E-value=1  Score=26.25  Aligned_cols=32  Identities=34%  Similarity=0.715  Sum_probs=25.2

Q ss_pred             cEeEEEecCCCCcEEEEEecC-----------CCcEEEEECCCCC
Q 039404           31 GVNDIAFSHPNKQLYVITCGD-----------DKTIKVWDATNGV   64 (65)
Q Consensus        31 ~v~~~~~~~~~~~~~l~s~~~-----------~~~i~~w~~~~~~   64 (65)
                      .|..+.|+|...  +|.+-+.           ...+++||+.+|.
T Consensus       251 ~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  251 GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             CceeeecCCccc--eEEEecCCccccCcccCCCceEEEEEccccc
Confidence            367899999998  8887432           2589999999985

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.16  E-value=1.7  Score=26.46  Aligned_cols=56  Identities=7%  Similarity=0.073  Sum_probs=34.7

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ..+|.|.+|=+.++.... .+.-....+.|.+++|+.++.  .+.-...||.|.+=.+.
T Consensus        90 Dt~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             CCCceEEEEeeecccHHH-HHhhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeec
Confidence            345667777665543211 111122346788999999998  77777778877664443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.95  E-value=1.9  Score=21.83  Aligned_cols=56  Identities=7%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             cccCeEEEEECCCCceEeee---E-Eee-------cccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            3 YSRHIVQIYPCNGGDEVRQH---L-EID-------AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~---~-~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ..+|.+++||+.+++...+.   . .+.       .....|..+.++..|.  .+++- .++..+.|+..
T Consensus        29 T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   29 TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEE-eCCCEEEeccc
Confidence            35789999999876532211   0 111       2345677788887777  44443 34556666543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.68  E-value=2.9  Score=25.17  Aligned_cols=33  Identities=9%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             cccEeEEEecCCC---CcEEEEEecCCCcEEEEECCCC
Q 039404           29 VGGVNDIAFSHPN---KQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        29 ~~~v~~~~~~~~~---~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ...|..+.|+|.+   .  +++.=..|+.+++||+...
T Consensus       146 ~~~i~qv~WhP~s~~~~--~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDS--HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CceEEEEEEcCCCCCCC--eEEEEecCCEEEEEecCCC
Confidence            4568899999974   5  7777778999999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.61  E-value=0.73  Score=26.15  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=28.5

Q ss_pred             ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ....++.|+|++.  .+.+-+.|..|+++++++|+
T Consensus       202 t~pts~Efsp~g~--qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  202 TEPTSFEFSPDGA--QISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cCccceEEccccC--cccccCcccEEEEEEeccch
Confidence            4457899999999  78888899999999999875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.25  E-value=2.9  Score=22.94  Aligned_cols=52  Identities=27%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEE-ecCCCcEEEEECCCCC
Q 039404            8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVIT-CGDDKTIKVWDATNGV   64 (65)
Q Consensus         8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~~i~~w~~~~~~   64 (65)
                      |=++|+.+++...   .+.. ..++.+++.+.+.++ +|++ ...++.+.++|..+|+
T Consensus       271 VWv~D~~t~krv~---Ri~l-~~~~~Si~Vsqd~~P-~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  271 VWVYDLKTHKRVA---RIPL-EHPIDSIAVSQDDKP-LLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEEETTTTEEEE---EEEE-EEEESEEEEESSSS--EEEEEETTTTEEEEEETTT--
T ss_pred             EEEEECCCCeEEE---EEeC-CCccceEEEccCCCc-EEEEEcCCCCeEEEEeCcCCc
Confidence            4455776665433   2321 124668888887775 5554 3567899999999875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=87.81  E-value=0.49  Score=29.26  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=36.8

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC-CcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD-KTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-~~i~~w~~~   61 (65)
                      +|...|.|++|...++....   ...+|.+.++.+.=+.++.. .+.+++.. ....+|+..
T Consensus      1118 vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             eeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHhccc
Confidence            36678899999998775333   35678888888777767773 33333322 355667654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=87.36  E-value=4.3  Score=23.98  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=28.6

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccE-eEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGV-NDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ..+.|||+.++........+++ ...+ .-+.|+.+++  +++--.. ..|.+++
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~-~~~~WP~frWS~DdK--y~Arm~~-~sisIyE  332 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKS-PYLKWPIFRWSHDDK--YFARMTG-NSISIYE  332 (698)
T ss_pred             ceEEEEEccccchhcceeccCC-CccccceEEeccCCc--eeEEecc-ceEEEEe
Confidence            5789999998753331112221 1222 4578898888  7766443 3455543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=87.14  E-value=3.6  Score=22.92  Aligned_cols=53  Identities=15%  Similarity=0.204  Sum_probs=29.8

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC--CcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD--KTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~--~~i~~w~~~~~   63 (65)
                      ..|.++|+.++....    +....+......|+|++.. .+++...+  ..+.++++.++
T Consensus       213 ~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        213 PTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEECCCC
Confidence            356667766553221    2223344456789999984 44444433  46666677655

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=87.11  E-value=5.6  Score=25.08  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=23.0

Q ss_pred             EeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ...++++|++.. ++++-..++.|+.||+.++
T Consensus       742 P~GIavspdG~~-LYVADs~n~~Irv~D~~tg  772 (1057)
T PLN02919        742 PSGISLSPDLKE-LYIADSESSSIRALDLKTG  772 (1057)
T ss_pred             ccEEEEeCCCCE-EEEEECCCCeEEEEECCCC
Confidence            356899999874 4445566789999998754

>PRK02888 nitrous-oxide reductase; Validated

Probab=86.91  E-value=4.8  Score=24.02  Aligned_cols=55  Identities=11%  Similarity=0.027  Sum_probs=34.0

Q ss_pred             CeEEEEECCCC--ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            6 HIVQIYPCNGG--DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         6 ~~i~i~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +.|.+.|..+.  ........+. -......+.++|+++. .+.++..+.++.+.|+..
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~k  352 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEEeCCCCCcEEEEEChh
Confidence            45777787651  0011111222 2334578999999994 444556789999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.73  E-value=4.1  Score=23.07  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=26.6

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ++.|.+||.+++....   .+..  ..|..+.|++++.  +++-.+.+ .+.+.+.
T Consensus       125 ~~~i~~yDw~~~~~i~---~i~v--~~vk~V~Ws~~g~--~val~t~~-~i~il~~  172 (443)
T PF04053_consen  125 SDFICFYDWETGKLIR---RIDV--SAVKYVIWSDDGE--LVALVTKD-SIYILKY  172 (443)
T ss_dssp             TTEEEEE-TTT--EEE---EESS---E-EEEEE-TTSS--EEEEE-S--SEEEEEE
T ss_pred             CCCEEEEEhhHcceee---EEec--CCCcEEEEECCCC--EEEEEeCC-eEEEEEe
Confidence            4468999998764333   3432  2378999999988  77776644 5555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=86.36  E-value=4.2  Score=22.86  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=19.6

Q ss_pred             eEEEecCCCCcEEEEEecCCCcEEE--EECCCC
Q 039404           33 NDIAFSHPNKQLYVITCGDDKTIKV--WDATNG   63 (65)
Q Consensus        33 ~~~~~~~~~~~~~l~s~~~~~~i~~--w~~~~~   63 (65)
                      ..-+|+|+++. ++++...|+...+  .|+..+
T Consensus       241 ~~P~fspDG~~-l~f~~~rdg~~~iy~~dl~~~  272 (425)
T COG0823         241 GAPAFSPDGSK-LAFSSSRDGSPDIYLMDLDGK  272 (425)
T ss_pred             CCccCCCCCCE-EEEEECCCCCccEEEEcCCCC
Confidence            45689999985 5666666665444  466543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=85.98  E-value=2.4  Score=23.26  Aligned_cols=32  Identities=31%  Similarity=0.706  Sum_probs=24.5

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+.|..+.|++.+.  ++++. .-.++++||++..
T Consensus       280 vsSISD~kFs~ngr--yIlsR-dyltvkiwDvnm~  311 (460)
T COG5170         280 VSSISDFKFSDNGR--YILSR-DYLTVKIWDVNMA  311 (460)
T ss_pred             hhhhcceEEcCCCc--EEEEe-ccceEEEEecccc
Confidence            35677899999998  77774 3468999998754

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=85.77  E-value=0.27  Score=28.89  Aligned_cols=55  Identities=13%  Similarity=0.240  Sum_probs=35.0

Q ss_pred             ccCeEEEEECCCCc--eEeeeEEeec-ccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            4 SRHIVQIYPCNGGD--EVRQHLEIDA-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         4 ~~~~i~i~~~~~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|..++|||+.+..  .... ..+.+ .......++|-.+.+  ++.+|.....+.++|++
T Consensus       127 nds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlR  184 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLR  184 (783)
T ss_pred             ccCCccceecccccCCCccc-cccccccccCccccccccCcc--hhhcccccchhhhhhhh
Confidence            35568899987652  1111 12222 334456778887777  78888777788888887

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=85.48  E-value=5.8  Score=23.68  Aligned_cols=51  Identities=10%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEec--CCCCcEEEEEecCCCcEEEEE
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ...+.|||...+. ..-...+ ...+.|..++|.  |+++  .+.+.+..+.|.++.
T Consensus        50 ~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~q--siLaVGf~~~v~l~~  102 (631)
T PF12234_consen   50 RSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQ--SILAVGFPHHVLLYT  102 (631)
T ss_pred             CCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCC--EEEEEEcCcEEEEEE
Confidence            3468899987654 3322233 345778888885  5677  788888888888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.15  E-value=5  Score=22.62  Aligned_cols=38  Identities=11%  Similarity=0.124  Sum_probs=29.4

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+......+..+..+|.+.  +.+....-|.|.++|+.++
T Consensus       302 ~l~D~~R~~~~i~~sP~~~--laA~tDslGRV~LiD~~~~  339 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGR--LAAVTDSLGRVLLIDVARG  339 (415)
T ss_pred             eeccCCceEEEEEECCCCC--EEEEEcCCCcEEEEECCCC
Confidence            3444455678899999988  7777777799999999876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.12  E-value=4.3  Score=21.88  Aligned_cols=51  Identities=20%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +.+.+||+.++....    +......+....|+|++.  .++-. .++.|.+.+..++
T Consensus        23 ~~y~i~d~~~~~~~~----l~~~~~~~~~~~~sP~g~--~~~~v-~~~nly~~~~~~~   73 (353)
T PF00930_consen   23 GDYYIYDIETGEITP----LTPPPPKLQDAKWSPDGK--YIAFV-RDNNLYLRDLATG   73 (353)
T ss_dssp             EEEEEEETTTTEEEE----SS-EETTBSEEEE-SSST--EEEEE-ETTEEEEESSTTS
T ss_pred             eeEEEEecCCCceEE----CcCCccccccceeecCCC--eeEEE-ecCceEEEECCCC
Confidence            456788988764222    222245678899999998  55554 3567777766543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=84.69  E-value=3.2  Score=23.05  Aligned_cols=30  Identities=10%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ..-+.++.|...|.  +|++|..+|.+.++.-
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r   54 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFER   54 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeec
Confidence            45678999999999  9999999999988854

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.69  E-value=1.7  Score=25.95  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=36.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |++-|.+.+|+-..+....  ....+..+.+.....++...  +++.++..+.|.++.+..
T Consensus        51 GsS~G~lyl~~R~~~~~~~--~~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   51 GSSAGSVYLYNRHTGEMRK--LKNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             ecccceEEEEecCchhhhc--ccccCccceEEEEEecchhH--hhhhhcCCceEEeehhhc
Confidence            5666788888876543222  12223334455667777777  788888888888876654

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.64  E-value=1.4  Score=15.69  Aligned_cols=19  Identities=26%  Similarity=0.235  Sum_probs=12.9

Q ss_pred             EEEecCCCcEEEEECCCCC
Q 039404           46 VITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        46 l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+..++.+.-.|.++|+
T Consensus         3 v~~~~~~g~l~AlD~~TG~   21 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGK   21 (38)
T ss_dssp             EEEETTTSEEEEEETTTTS
T ss_pred             EEEeCCCCEEEEEECCCCC
Confidence            4444677777777777764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=84.57  E-value=1.7  Score=26.62  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=38.0

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+.+-|+.++.........+..+.+|+.+..+..+.  +++....+.-+-+||+++.
T Consensus       499 ~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~--yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  499 DLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGR--YLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             eEEEEEcccccccccccCCCCCcCcceeeeecccCc--eEEEEecccchHHHhhccc
Confidence            345667766643322112234567899999999998  8998888888899988653

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.44  E-value=4.5  Score=21.51  Aligned_cols=53  Identities=13%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec------CCCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG------DDKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~~~~i~~w~~~~~   63 (65)
                      ..|++||..+.....+   -.+-.+.|..+.|.....  +++.|.      ....+..||..+.
T Consensus        16 ~~lC~yd~~~~qW~~~---g~~i~G~V~~l~~~~~~~--Llv~G~ft~~~~~~~~la~yd~~~~   74 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSP---GNGISGTVTDLQWASNNQ--LLVGGNFTLNGTNSSNLATYDFKNQ   74 (281)
T ss_pred             CEEEEEECCCCEeecC---CCCceEEEEEEEEecCCE--EEEEEeeEECCCCceeEEEEecCCC
Confidence            4699999877643331   222356789999975555  666653      3456667776553

>smart00564 PQQ beta-propeller repeat

Probab=84.44  E-value=1.2  Score=14.91  Aligned_cols=20  Identities=30%  Similarity=0.298  Sum_probs=13.3

Q ss_pred             EEEEecCCCcEEEEECCCCC
Q 039404           45 YVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        45 ~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.++.++.+...|.++|+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~   27 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGE   27 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCc
Confidence            35555667777777777664

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.23  E-value=6.7  Score=24.13  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=17.7

Q ss_pred             CCCCcEEEEEecCCCcEEEEECCCC
Q 039404           39 HPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        39 ~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+|.  ++++|+.||++.+-.+-+.
T Consensus        81 ~~Ge--y~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   81 LEGE--YVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             cCCc--eEEEecCCCcEEEeeccCC
Confidence            3577  9999999999888765443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=83.06  E-value=10  Score=24.56  Aligned_cols=29  Identities=10%  Similarity=0.178  Sum_probs=22.4

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ...|.+++|+|++.  .++-.....++.+.+
T Consensus       109 d~GI~aaswS~Dee--~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen  109 DNGISAASWSPDEE--LLALITGRQTLLFMT  137 (1265)
T ss_pred             cCceEEEeecCCCc--EEEEEeCCcEEEEEe
Confidence            46789999999999  777766667776653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=82.81  E-value=6.3  Score=21.98  Aligned_cols=48  Identities=21%  Similarity=0.476  Sum_probs=32.3

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .|.+|+..... ... ..+..  +.+.++.|..++.   |+....||.++++|+.
T Consensus        62 ~I~iys~sG~l-l~~-i~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSSGKL-LSS-IPWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCCCE-eEE-EEECC--CCEEEEEECCCCe---EEEEEcCCEEEEEeCC
Confidence            47888875432 221 12332  7899999987655   5566789999999874

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=82.80  E-value=7.5  Score=22.83  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=25.4

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .++|.++.|++.+.+-.++-|-+...+.++|++.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~  303 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG  303 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence            6899999999999851233356778888888764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=82.66  E-value=6.4  Score=21.96  Aligned_cols=41  Identities=20%  Similarity=0.129  Sum_probs=27.8

Q ss_pred             eeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           20 RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        20 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .+...+....++|.+++.+ +-.  +++.+..+|.+.+.|+|..
T Consensus        77 ~P~~l~~~~~g~vtal~~S-~iG--Fvaigy~~G~l~viD~RGP  117 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNS-DIG--FVAIGYESGSLVVIDLRGP  117 (395)
T ss_dssp             EEEEEE---S-SEEEEEE--BTS--EEEEEETTSEEEEEETTTT
T ss_pred             CchhheeccCCcEeEEecC-CCc--EEEEEecCCcEEEEECCCC
Confidence            3333445557889999987 444  7999999999999999754

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.04  E-value=6.1  Score=21.29  Aligned_cols=25  Identities=8%  Similarity=0.092  Sum_probs=19.0

Q ss_pred             EecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           36 AFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        36 ~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ...+++.  .+..++.|+.....|+++
T Consensus       100 ~~d~~~g--lIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen  100 QCDFDGG--LIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             EEcCCCc--eEEEecCCCcEEEecccc
Confidence            3345677  888899999988888765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=81.55  E-value=4.9  Score=19.87  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..+|..+++..-.. .+............ +.+.  .++.++.++.+..+|..+|+
T Consensus         2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~-~~~~--~v~~~~~~~~l~~~d~~tG~   57 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSY-DLGPGIGGPVATAV-PDGG--RVYVASGDGNLYALDAKTGK   57 (238)
T ss_dssp             TSEEEEEETTTTEEEEEE-ECSSSCSSEEETEE-EETT--EEEEEETTSEEEEEETTTSE
T ss_pred             CCEEEEEECCCCCEEEEE-ECCCCCCCccceEE-EeCC--EEEEEcCCCEEEEEECCCCC
Confidence            578889999777644321 22111111121122 2345  56666788889889887774

...

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.23  E-value=5  Score=23.70  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=33.9

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      +++..|.|++||--......   .+++-...|..+..+..+.  ++++.| ..++.+.|++
T Consensus       578 ~as~kGDirLyDRig~rAKt---alP~lG~aIk~idvta~Gk--~ilaTC-k~yllL~d~~  632 (776)
T COG5167         578 AASRKGDIRLYDRIGKRAKT---ALPGLGDAIKHIDVTANGK--HILATC-KNYLLLTDVP  632 (776)
T ss_pred             EecCCCceeeehhhcchhhh---cCcccccceeeeEeecCCc--EEEEee-cceEEEEecc
Confidence            35677889999853322122   3555567788898888888  554433 3455566553

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=80.14  E-value=10  Score=23.96  Aligned_cols=30  Identities=10%  Similarity=0.299  Sum_probs=25.9

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      .+.+..+++++.+.  .++.+..++.|.+|.-
T Consensus       312 ~s~i~~fDiSsn~~--alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  312 GSGISAFDISSNGD--ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCcceeEEecCCCc--eEEEecccCcEeeecC
Confidence            45588999999998  8999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.67
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.64
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.6
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.59
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.58
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.56
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.55
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.55
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.55
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.52
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.51
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.51
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.5
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.5
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.5
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.5
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.5
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.5
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.5
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.49
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.49
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.49
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.49
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.49
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.49
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.48
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.48
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.47
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.46
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.46
2pm7_B	297	Protein transport protein SEC13, protein transport	99.46
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.45
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.45
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.45
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.45
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.45
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.44
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.44
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.44
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.44
2pm7_B	297	Protein transport protein SEC13, protein transport	99.44
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.43
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.42
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.42
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.41
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.41
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.41
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.41
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.4
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.4
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.4
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.39
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.39
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.39
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.39
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.39
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.38
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.37
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.37
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.37
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.36
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.36
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.35
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.35
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.34
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.34
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.34
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.33
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.33
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.33
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.32
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.31
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.31
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.31
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.29
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.29
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.29
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.28
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.28
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.28
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.28
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.27
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.27
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.27
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.27
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.27
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.27
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.26
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.26
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.26
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.26
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.25
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.25
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.25
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.25
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.24
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.23
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.21
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.21
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.21
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.21
3jro_A	753	Fusion protein of protein transport protein SEC13	99.21
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.2
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.19
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.17
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.17
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.17
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.16
3jro_A	753	Fusion protein of protein transport protein SEC13	99.16
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.16
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.15
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.15
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.14
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.13
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.13
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.13
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.11
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.11
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.1
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.05
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.79
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.76
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.68
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.58
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.51
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.4
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.38
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.37
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.36
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.35
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.31
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.3
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.29
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.29
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.29
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.26
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.19
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.12
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.09
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.06
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.05
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.03
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.99
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.99
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.82
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.66
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.51
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.51
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.44
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.44
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.42
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.41
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.37
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.35
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.25
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.21
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.2
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.16
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.09
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.06
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.95
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.61
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.58
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.53
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.5
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.43
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.24
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.94
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.92
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.53
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.47
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.05
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.84
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	94.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	94.55
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	94.11
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	93.95
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	93.83
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	93.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	93.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	93.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	93.11
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.36
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	91.82
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	91.01
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	90.89
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	90.66
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	90.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	90.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	90.48
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	88.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	86.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	86.11
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	85.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	85.88
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	85.74
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	84.58
2ece_A	462	462AA long hypothetical selenium-binding protein;	83.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	82.16
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	82.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	81.07
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	81.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	80.92
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	80.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	80.4

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.67  E-value=6.7e-16  Score=76.08  Aligned_cols=59  Identities=17%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK   65 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~   65 (65)
                      ++.|+.|++||+.++....   .+.+|.+.|.+++|+|++.  +|++++.|++|++||+.+..|
T Consensus       260 g~~d~~i~iwd~~~~~~~~---~l~gH~~~V~~l~~spdg~--~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          260 GFAQNQLVIWKYPTMAKVA---ELKGHTSRVLSLTMSPDGA--TVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             CTTTCCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--CEEEEETTTEEEEECCSCCCC
T ss_pred             EcCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEecCCeEEEEECCCCCC
Confidence            3468999999998765443   6889999999999999999  899999999999999987654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.64  E-value=1.8e-15  Score=76.80  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|+.|++||+.++....  ..+.+|...|.+++|+|++.  +|++++.|++|++|++..
T Consensus       287 gs~D~~V~iwd~~~~~~~~--~~~~gH~~~V~~v~fSpdg~--~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          287 ASNDNSIALVKLKDLSMSK--IFKQAHSFAITEVTISPDST--YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EETTSCEEEEETTTTEEEE--EETTSSSSCEEEEEECTTSC--EEEEEETTSEEEEEECCT
T ss_pred             EcCCCEEEEEECCCCcEEE--EecCcccCCEEEEEECCCCC--EEEEEeCCCeEEEEEcCC
Confidence            6789999999998865333  12468999999999999999  999999999999999854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.60  E-value=9.9e-15  Score=74.88  Aligned_cols=57  Identities=18%  Similarity=0.345  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++...   ..+.+|.+.|.+++|+|++.  +|++++.|++|++||+.+.
T Consensus       340 g~~d~~I~iwd~~~~~~v---~~l~gH~~~V~~l~~spdg~--~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKV---AELKGHTSRVLSLTMSPDGA--TVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             CTTTCCEEEEETTTCCEE---EEECCCSSCEEEEEECTTSS--CEEEEETTTEEEEECCSCS
T ss_pred             ecCCCEEEEEECCCCcEE---EEEcCCCCCEEEEEEcCCCC--EEEEEecCCeEEEEECCCC
Confidence            346899999999876543   36889999999999999999  8999999999999998653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.59  E-value=2e-14  Score=72.75  Aligned_cols=61  Identities=18%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             ccccCeEEEEECCCCceEe-eeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++.... ......+|.+.|.+++|+|++.  ++++++.|++|++||+++++
T Consensus        99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             EETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred             EECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            6789999999998765332 2234568999999999999999  99999999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.58  E-value=3e-14  Score=70.70  Aligned_cols=58  Identities=19%  Similarity=0.355  Sum_probs=50.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++...   ..+.+|...|.+++|+|++.  .+++++.|+.|++||..+++
T Consensus       204 ~s~D~~i~iWd~~~~~~~---~~~~~h~~~v~~~~~~p~~~--~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EETTSEEEEEETTTTEEE---EEEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCC
T ss_pred             EcCCCeEEEEeCCCCccc---eeeCCCCCCEEEEEECCCCC--EEEEEcCCCeEEEEECCCCc
Confidence            567999999999876533   36889999999999999999  99999999999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.56  E-value=4.5e-14  Score=71.46  Aligned_cols=59  Identities=17%  Similarity=0.300  Sum_probs=51.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|++++.. ++++++.|+.|++||+++++
T Consensus       145 gs~d~~i~iwd~~~~~~~~---~~~~h~~~V~~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~  203 (344)
T 4gqb_B          145 GSKDICIKVWDLAQQVVLS---SYRAHAAQVTCVAASPHKDS-VFLSCSEDNRILLWDTRCPK  203 (344)
T ss_dssp             EETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSSCTT-EEEEEETTSCEEEEETTSSS
T ss_pred             EeCCCeEEEEECCCCcEEE---EEcCcCCceEEEEecCCCCC-ceeeeccccccccccccccc
Confidence            6789999999998865433   68899999999999998865 78999999999999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.55  E-value=4.3e-14  Score=70.15  Aligned_cols=57  Identities=26%  Similarity=0.524  Sum_probs=50.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+|++.  ++++++.|++|++||++++
T Consensus        73 ~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           73 GSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGT
T ss_pred             ECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCC
Confidence            6779999999998765443   6789999999999999999  9999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.55  E-value=6.7e-14  Score=68.95  Aligned_cols=59  Identities=14%  Similarity=0.339  Sum_probs=49.2

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.|++|++||+.++.... ...+.+|...|.+++|+|++.  ++++++.|+.|++|++++++
T Consensus        42 g~D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           42 ALDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             EETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE
T ss_pred             EeCCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCce
Confidence            458999999998875433 224557888899999999999  99999999999999998764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.55  E-value=2.6e-14  Score=73.04  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=44.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEe-EEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVN-DIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ++.|++|++||+.++....   .+.+|...+. .++|+|+++  +|++++.|++|++||+
T Consensus       301 gS~DgTIkIWDl~tGk~l~---tL~gH~~~vvs~vafSPDG~--~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          301 ILTSGTIAIWDLLLGQCTA---LLPPVSDQHWSFVKWSGTDS--HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTSCEEEEETTTCSEEE---EECCC--CCCCEEEECSSSS--EEEEECTTSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEE---EecCCCCCeEEEEEECCCCC--EEEEEECCCcEEEecC
Confidence            4569999999999876554   5778876655 589999999  9999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.52  E-value=1.5e-13  Score=68.81  Aligned_cols=58  Identities=22%  Similarity=0.410  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+......   ..+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus       224 ~s~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~sp~~~--~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLA---GTLSGHASWVLNVAFCPDDT--HFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             ECTTSCEEEEETTTCCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred             EcCCCeEEEEECCCccee---EEEcCCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCE
Confidence            567899999999876533   36788999999999999999  99999999999999998763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.51  E-value=1.9e-13  Score=70.19  Aligned_cols=59  Identities=14%  Similarity=0.339  Sum_probs=49.1

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.|+.|++||..++.... ...+.+|...|.+++|+|++.  ++++|+.|+.|++||+.+++
T Consensus       122 gld~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          122 ALDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             EETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred             EeCCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCc
Confidence            458999999998875332 234557888899999999999  99999999999999998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.51  E-value=2e-13  Score=68.61  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+|++.  .+++++.|+.|++||++++
T Consensus       202 g~~d~~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p~~~--~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EETTSCEEEEETTTCSEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT
T ss_pred             EeCCCcEEEEECCCCeeEE---EEcCCcCCEEEEEEcCCCC--EEEEEcCCCcEEEEECCCC
Confidence            5679999999998765333   6788999999999999999  9999999999999999865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.50  E-value=2.3e-13  Score=67.96  Aligned_cols=58  Identities=17%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.+....   ..+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus       172 ~~~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~sp~g~--~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          172 AGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASPDGT--LIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             EETTSCEEEEETTTTEEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCEEEEEETTTTE
T ss_pred             EeCCCEEEEEECCcchhh---eeecCCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            567899999999875432   35778999999999999999  99999999999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.50  E-value=1.3e-13  Score=68.41  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=45.9

Q ss_pred             ccccCeEEEEECCCCceEeee------EEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQH------LEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK   65 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~   65 (65)
                      ++.|+.|++||+.++......      ....+|...|.+++|+|++.  +|++++.|+.|++||+++|.+
T Consensus       273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~--~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ--TLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS--EEEEEETTSCEEEEEEEC---
T ss_pred             ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEeCCCcCC
Confidence            456889999998765432211      12346788999999999999  999999999999999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.50  E-value=3.6e-13  Score=67.24  Aligned_cols=56  Identities=21%  Similarity=0.392  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+|++.  .+++++.|+.|++||++.
T Consensus        83 ~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             EETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTS
T ss_pred             EeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCC
Confidence            6789999999998865433   6789999999999999999  999999999999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.50  E-value=2.1e-13  Score=70.08  Aligned_cols=58  Identities=24%  Similarity=0.513  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus       314 gs~D~~i~iwd~~~~~~~~---~~~~h~~~v~~v~~~~~g~--~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          314 GSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             EETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECSSSS--CEEEEETTTEEEEECCTTSC
T ss_pred             EeCCCeEEEEECCCCceEE---EEECCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            5678999999998765333   6788999999999999999  89999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.50  E-value=1.6e-13  Score=69.56  Aligned_cols=55  Identities=16%  Similarity=0.102  Sum_probs=46.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|+.|++||+.++....    ..+|.+.|.+++|+| ++.  +|++++.|++|++|++.+
T Consensus       288 gs~D~~i~iwd~~~~~~~~----~~~H~~~V~~vafsP~d~~--~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          288 ISEDCTVAVLDADFSEVFR----DLSHRDFVTGVAWSPLDHS--KFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EETTSCEEEECTTSCEEEE----ECCCSSCEEEEEECSSSTT--EEEEEETTSCEEEEECC-
T ss_pred             EeCCCEEEEEECCCCcEeE----ECCCCCCEEEEEEeCCCCC--EEEEEcCCCeEEEEECCC
Confidence            5678999999998765332    447999999999998 577  899999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.50  E-value=1.2e-13  Score=70.25  Aligned_cols=59  Identities=20%  Similarity=0.280  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+....  .....+.+|...|.+++|+|++.  .+++++.|+++++||+++++
T Consensus       224 gs~D~~v~~wd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~--~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFFPDGQ--RFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             EETTSCEEEEETTTTC--CCCEEECCCSSCCCEEEECTTSS--EEEEECSSSCEEEEETTTTE
T ss_pred             EECCCeEEEEECCCCC--cceEEECCcCCCeEEEEEecCCC--eEEEEcCCCeEEEEECCCCc
Confidence            5779999999987432  12235788999999999999999  99999999999999998763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.50  E-value=2.7e-13  Score=68.57  Aligned_cols=57  Identities=16%  Similarity=0.301  Sum_probs=49.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+|++.  .+++++.|+++++||++.+
T Consensus       216 gs~Dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p~~~--~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          216 GGCDKKAMVWDMRSGQCVQ---AFETHESDVNSVRYYPSGD--AFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT
T ss_pred             EeCCCeEEEEECCCCcEEE---EecCCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEECCCC
Confidence            5679999999998765433   5788999999999999999  9999999999999999765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.49  E-value=1.2e-13  Score=70.92  Aligned_cols=58  Identities=29%  Similarity=0.536  Sum_probs=50.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++...   ..+.+|...|.+++|+|++.  ++++++.|++|++||+.+++
T Consensus       126 ~s~Dg~i~vwd~~~~~~~---~~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd~~~~~  183 (410)
T 1vyh_C          126 ASEDATIKVWDYETGDFE---RTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFE  183 (410)
T ss_dssp             EESSSCEEEEETTTCCCC---EEECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEETTSSC
T ss_pred             EeCCCeEEEEECCCCcEE---EEEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCc
Confidence            578999999999876533   36889999999999999999  99999999999999997653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.49  E-value=2.5e-13  Score=68.01  Aligned_cols=58  Identities=21%  Similarity=0.404  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++...   ..+.+|...|.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       182 g~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~spd~~--~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLL---HTLEGHAMPIRSLTFSPDSQ--LLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             EETTSCEEEEETTTTEEE---EEECCCSSCCCEEEECTTSC--EEEEECTTSCEEEEETTTCC
T ss_pred             EcCCCeEEEEECCCCcEE---EEEcccCCceeEEEEcCCCC--EEEEEcCCCeEEEEECCCcc
Confidence            567899999999876533   36788999999999999999  99999999999999998653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.49  E-value=4.3e-13  Score=67.40  Aligned_cols=55  Identities=20%  Similarity=0.468  Sum_probs=48.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|+.|++||+.++....   .+.+|...|.+++|+|++.  .+++++.|+.|++||+.
T Consensus        94 ~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS
T ss_pred             EcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc
Confidence            5779999999998765433   6788999999999999999  99999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.49  E-value=3.6e-13  Score=67.69  Aligned_cols=61  Identities=26%  Similarity=0.379  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+....    ...+...+.+|...|.+++|+|++.  ++++++.|++|++||+++++
T Consensus        45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s~s~D~~v~lwd~~~~~  109 (343)
T 2xzm_R           45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAISSSWDKTLRLWDLRTGT  109 (343)
T ss_dssp             EETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEEEETTSEEEEEETTSSC
T ss_pred             EcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCc
Confidence            5779999999986432    1223346789999999999999999  99999999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.49  E-value=1.1e-13  Score=71.30  Aligned_cols=60  Identities=10%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-CCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+.||.|++||+.++... ....+.+|.+.|.+++|+|. +.  .|++++.|++|++||++++
T Consensus       137 sGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          137 VGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             EEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEEEETTSC
T ss_pred             EEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEEeeccCC
Confidence            3678999999999765422 22346689999999999984 56  8999999999999999764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.49  E-value=4.1e-13  Score=67.48  Aligned_cols=58  Identities=16%  Similarity=0.421  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++...   ..+.+|...|.+++|+|++.  ++++++.|+.|++||++++.
T Consensus       160 ~s~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~~~~~~--~l~sg~~d~~v~~wd~~~~~  217 (340)
T 1got_B          160 SSGDTTCALWDIETGQQT---TTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             EETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCS
T ss_pred             EECCCcEEEEECCCCcEE---EEEcCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCe
Confidence            567899999999876533   36788999999999999999  99999999999999998763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.48  E-value=5.5e-13  Score=67.49  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             ccccCe-EEEEECCCCceEeeeEEee-c-ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHI-VQIYPCNGGDEVRQHLEID-A-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~-i~i~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+. |++||+.++....   .+. + |...|.+++|+|++.  ++++++.|+++++||++.+
T Consensus       213 ~s~d~~~v~iwd~~~~~~~~---~~~~g~h~~~v~~~~~s~~~~--~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGVLVR---EFRRGLDRADVVDMKWSTDGS--KLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EETTCSEEEEEETTTCCEEE---EEECTTCCSCEEEEEECTTSC--EEEEEETTCEEEEEESSCC
T ss_pred             EeCCCCEEEEEECCCCcEEE---EEEcCCCCCcEEEEEECCCCC--EEEEEECCCEEEEEEccCC
Confidence            577897 9999998765443   565 5 899999999999999  9999999999999999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.48  E-value=3.6e-13  Score=68.80  Aligned_cols=58  Identities=14%  Similarity=0.423  Sum_probs=50.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++...   ..+.+|...|.+++|+|++.  .+++++.|+.+++||+++++
T Consensus       141 ~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             EETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE
T ss_pred             EcCCCeEEEEECCCCcEE---EEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCe
Confidence            567899999999876433   36788999999999999999  89999999999999998763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.47  E-value=7.1e-13  Score=67.08  Aligned_cols=61  Identities=21%  Similarity=0.407  Sum_probs=49.1

Q ss_pred             ccccCeEEEEECCCCce------------Eee-eEEeecccccEeEEEecCCCCcEEEEEecCCCc-EEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDE------------VRQ-HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT-IKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~-i~~w~~~~~~   64 (65)
                      |+.++.|++||+.++..            ..+ ...+.+|...|.+++|+|++.  ++++++.|++ |++||+++++
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~--~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD--MVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS--EEEEEETTCSEEEEEETTTCC
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC--EEEEEeCCCCEEEEEECCCCc
Confidence            56789999999976430            011 346789999999999999999  9999999998 9999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.46  E-value=2.3e-13  Score=69.58  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=48.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|++|++||+.++....   .+..|...+.+++|+|++.. ++++++.|++|++||+++++
T Consensus       162 ~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          162 VGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC
T ss_pred             EECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCc
Confidence            5789999999997654332   45568889999999998764 79999999999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.46  E-value=4.3e-13  Score=66.93  Aligned_cols=60  Identities=13%  Similarity=0.407  Sum_probs=49.0

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCC----CcEEEEEecCCCcEEEEECCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPN----KQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +|+.|+.|++||+...........+.+|...|.+++|+|++    .  .+++++.|++|++|++.+
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~--~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS--TIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC--EEEEEETTCEEEEEECSS
T ss_pred             EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc--eEEEEcCCCeEEEEEccC
Confidence            36779999999987543233344678999999999999986    6  899999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.46  E-value=5.3e-13  Score=66.06  Aligned_cols=59  Identities=22%  Similarity=0.516  Sum_probs=48.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++|++.... ......+.+|.+.|.+++|+++  +.  ++++++.|++|++||++++
T Consensus        27 ~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~iWd~~~~   87 (297)
T 2pm7_B           27 CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMIWKEENG   87 (297)
T ss_dssp             EETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEEEEBSSS
T ss_pred             EeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEEEEcCCC
Confidence            5779999999986432 1233468899999999999864  67  8999999999999999765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.45  E-value=9.5e-13  Score=66.31  Aligned_cols=59  Identities=22%  Similarity=0.398  Sum_probs=49.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.+++|+...+. ......+.+|...|.+++|+|++.  ++++++.|+.|++||++++
T Consensus        79 ~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             EETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTT
T ss_pred             EECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCC
Confidence            5679999999987653 233446789999999999999999  9999999999999998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.45  E-value=5.4e-13  Score=67.20  Aligned_cols=60  Identities=17%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++|++..+..........+|...|.+++|+|++.  ++++++.|+.+++|++..+
T Consensus        34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw~~~~~   93 (345)
T 3fm0_A           34 CGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIWKKNQD   93 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECCC
T ss_pred             EcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEEEccCC
Confidence            57799999999876543322223468999999999999999  9999999999999998654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.45  E-value=7.8e-13  Score=70.67  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||..+...   ...+.+|...|.+++|+|++.  ++++++.|++|++||..+++
T Consensus       166 ~s~D~~v~lwd~~~~~~---~~~l~~H~~~V~~v~fspdg~--~las~s~D~~i~lwd~~~g~  223 (611)
T 1nr0_A          166 GSDDNTVAIFEGPPFKF---KSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYNGVDGT  223 (611)
T ss_dssp             EETTSCEEEEETTTBEE---EEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCC
T ss_pred             EeCCCeEEEEECCCCeE---eeeeccccCceEEEEECCCCC--EEEEEECCCcEEEEECCCCc
Confidence            57799999999876432   336889999999999999999  99999999999999987653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.45  E-value=9.2e-13  Score=67.06  Aligned_cols=61  Identities=18%  Similarity=0.206  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeE-EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHL-EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||...+....... ...+|.+.|.+++|+|++.  ++++++.|+.|++|++..++
T Consensus       316 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~--~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS--ALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS--EEEEECTTSCEEEEECCSSS
T ss_pred             EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC--EEEEeeCCCCEEEEecCCCc
Confidence            5678999999987765433211 1257899999999999999  99999999999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.45  E-value=5.7e-13  Score=66.48  Aligned_cols=59  Identities=25%  Similarity=0.556  Sum_probs=48.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++. ......+.+|...|.+++|+++  +.  .+++++.|++|++||++++
T Consensus        31 gs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~iWd~~~~   91 (316)
T 3bg1_A           31 CSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVIIWREENG   91 (316)
T ss_dssp             EETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEEEECCSSS
T ss_pred             EeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEEEEECCCC
Confidence            6789999999997653 2233468899999999999864  66  8999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.44  E-value=1.9e-12  Score=64.11  Aligned_cols=58  Identities=17%  Similarity=0.420  Sum_probs=50.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...+.+++|+|++.  ++++++.|+.+++||+++++
T Consensus        83 ~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A           83 ASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCC
T ss_pred             ECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCE
Confidence            5678999999998765433   6788999999999999999  99999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.44  E-value=7.4e-13  Score=66.38  Aligned_cols=60  Identities=15%  Similarity=0.330  Sum_probs=48.7

Q ss_pred             ccccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.. +........+.+|...|.+++|+|++.  ++++++.|++|++|+..++
T Consensus       125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~--~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA--LLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEEEETT
T ss_pred             EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC--EEEEEcCCCeEEEEECCCC
Confidence            57799999999943 222333446788999999999999999  9999999999999987543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.44  E-value=3.7e-13  Score=68.22  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++...   ..+.+|...|.+++|+|++.. +|++++.|++|++||+++++
T Consensus       245 g~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~l~~sp~~~~-~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          245 GDETGNVSLVNIKNPDSA---QTSAVHSQNITGLAYSYHSSP-FLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             EESSSCEEEEESSCGGGC---EEECCCSSCEEEEEECSSSSC-CEEEEETTSCEEEECTTSCE
T ss_pred             eecccceeEEECCCCcEe---EEEeccceeEEEEEEcCCCCC-EEEEEeCCCEEEEEECCCCc
Confidence            567899999999875433   367889999999999998754 79999999999999998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.44  E-value=1.1e-12  Score=65.07  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.+.....   .+.+|...|.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       191 ~~~d~~i~i~d~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKT---NHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             EETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTCEEEEEETTTTE
T ss_pred             EcCCCEEEEEECCCCceee---EecCCCCcEEEEEECCCCC--EEEEEeCCCeEEEEEeccCc
Confidence            4578899999998765333   5778999999999999999  99999999999999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.44  E-value=9e-13  Score=65.25  Aligned_cols=59  Identities=22%  Similarity=0.415  Sum_probs=48.4

Q ss_pred             ccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCCC---CcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHPN---KQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|+.|++||+.++. .......+.+|...|.+++|+|++   .  ++++++.|++|++||+++
T Consensus       176 gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~--~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS--YMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE--EEEEEETTSCEEEEEESS
T ss_pred             EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce--EEEEEECCCcEEEEEeCC
Confidence            5679999999987643 222344678999999999999985   5  899999999999999865

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.43  E-value=1.2e-12  Score=66.70  Aligned_cols=58  Identities=24%  Similarity=0.463  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...|.+++|+|++.  .+++++.|+.+++||+++++
T Consensus       157 ~s~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          157 SSQDMQLKIWSVKDGSNPR---TLIGHRATVTDIAIIDRGR--NVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             EETTSEEEEEETTTCCCCE---EEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEETTTTE
T ss_pred             EeCCCeEEEEeCCCCcCce---EEcCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEeECCCCc
Confidence            5678999999998765333   5788999999999999999  89999999999999998763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.42  E-value=1.2e-12  Score=70.66  Aligned_cols=58  Identities=21%  Similarity=0.335  Sum_probs=50.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.+....   ..+.+|.+.|.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       537 ~s~d~~v~vwd~~~~~~~---~~~~~h~~~v~~v~~spdg~--~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLR---STLAGHTGYVSTVAVSPDGS--LCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             EETTSCEEEEETTTCCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSBCEEEETTTTE
T ss_pred             EeCCCeEEEEECCCCcEE---EEEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            567899999999875433   36788999999999999999  99999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.42  E-value=2.7e-12  Score=63.56  Aligned_cols=58  Identities=28%  Similarity=0.619  Sum_probs=49.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++|+..++....   .+.+|...|.+++|+|++.  ++++++.|+.+++||+.+++
T Consensus        41 ~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           41 SSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             EETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             eeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEECCCCc
Confidence            5678999999998765333   5778999999999999999  99999999999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.41  E-value=7.3e-14  Score=71.43  Aligned_cols=60  Identities=20%  Similarity=0.300  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCceEe--eeEEeecccccEeEEEecC--------CCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~--------~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|++|++||...+....  ....+.+|.+.|.+++|+|        ++.  +|++++.|+++++||++++
T Consensus       107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETT
T ss_pred             EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCC
Confidence            5679999999987764322  2234678999999999987        566  8999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.3e-12  Score=63.75  Aligned_cols=58  Identities=26%  Similarity=0.490  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus        50 ~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~  107 (369)
T 3zwl_B           50 CSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLWDVSNGQ  107 (369)
T ss_dssp             EESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCC
T ss_pred             EeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            5678999999998765433   6788999999999999999  99999999999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.41  E-value=4.6e-12  Score=64.12  Aligned_cols=58  Identities=19%  Similarity=0.346  Sum_probs=49.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...+.+++|+|.  +.  .+++++.|+.+++||+++++
T Consensus       172 ~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~g~--~l~sgs~Dg~v~~wd~~~~~  231 (354)
T 2pbi_B          172 ASGDGTCALWDVESGQLLQ---SFHGHGADVLCLDLAPSETGN--TFVSGGCDKKAMVWDMRSGQ  231 (354)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECCCSSCC--EEEEEETTSCEEEEETTTCC
T ss_pred             EeCCCcEEEEeCCCCeEEE---EEcCCCCCeEEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            5679999999998765433   67889999999999874  56  89999999999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.41  E-value=2.9e-12  Score=63.95  Aligned_cols=58  Identities=17%  Similarity=0.359  Sum_probs=49.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+| ++.  ++++++.|+.|++||+++++
T Consensus        91 ~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             EETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTE
T ss_pred             ecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCe
Confidence            5678999999998765433   5778999999999999 777  99999999999999998763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.4e-12  Score=64.56  Aligned_cols=58  Identities=24%  Similarity=0.457  Sum_probs=42.5

Q ss_pred             ccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|+.|++|+.....    .......+.+|...|.+++|+|++.  ++++++.|+.|++||++
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETD  137 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECC
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEecc
Confidence            5679999999985321    1223446788999999999999999  99999999999999994

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.40  E-value=2.5e-12  Score=68.76  Aligned_cols=58  Identities=22%  Similarity=0.390  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEee-------cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEID-------AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||..++....   .+.       +|.+.|.+++|+|++.  .+++++.|++|++||+.+++
T Consensus       208 ~s~D~~i~lwd~~~g~~~~---~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          208 TGGDGTIVLYNGVDGTKTG---VFEDDSLKNVAHSGSVFGLTWSPDGT--KIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             EETTSCEEEEETTTCCEEE---ECBCTTSSSCSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE
T ss_pred             EECCCcEEEEECCCCcEee---eeccccccccccCCCEEEEEECCCCC--EEEEEeCCCeEEEEeCCCCc
Confidence            5789999999988765433   332       7999999999999999  99999999999999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.40  E-value=1.7e-12  Score=64.13  Aligned_cols=42  Identities=26%  Similarity=0.460  Sum_probs=36.9

Q ss_pred             eeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           21 QHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        21 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ....+.+|...|.+++|+|++.  ++++++.|+.|++|++.+++
T Consensus       298 ~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          298 LLSEHDDHNGEVWSVSWNLTGT--ILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEEECTTSSCEEEEEECSSSC--CEEEEETTSCEEEEEECTTS
T ss_pred             EEEEEecccccEEEEEEcCCCC--EEEEecCCCcEEEEecCcCc
Confidence            3445778999999999999999  89999999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.39  E-value=3.1e-13  Score=69.67  Aligned_cols=61  Identities=21%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.............+|...|.+++|+|++.  +|++++.|+.|++||+.++.
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~--~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA--RLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS--EEEEEESSSCEEEEESSSSS
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCC--eeEEEcCCCEEEEEECCCCc
Confidence            56789999999976442222223457889999999999999  99999999999999998753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.39  E-value=2.4e-12  Score=65.54  Aligned_cols=58  Identities=17%  Similarity=0.308  Sum_probs=49.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++...   ..+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus       115 ~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A          115 GTTEGDIKVLDSNFNLQR---EIDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             EETTSCEEEECTTSCEEE---EETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             EECCCCEEEEeCCCccee---eecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCc
Confidence            567899999999865433   24578999999999999999  99999999999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=3.2e-12  Score=64.22  Aligned_cols=58  Identities=14%  Similarity=0.304  Sum_probs=47.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeec-ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++....  ..+.. |...|.+++|+|++.  ++++++. +.|++||+++++
T Consensus       188 g~~dg~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~fs~~g~--~l~s~~~-~~v~iwd~~~~~  246 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQAS--SRFPVDEEAKIKEVKFADNGY--WMVVECD-QTVVCFDLRKDV  246 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCC--EECCCCTTSCEEEEEECTTSS--EEEEEES-SBEEEEETTSST
T ss_pred             EcCCCEEEEEECCCCCCCc--cEEeccCCCCEEEEEEeCCCC--EEEEEeC-CeEEEEEcCCCC
Confidence            5789999999998765331  24566 999999999999999  8999884 499999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.39  E-value=5.5e-12  Score=64.72  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeec--ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+  |...|.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       188 ~~~d~~i~iwd~~~~~~~~---~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQ---IIENSPRHGAVSSICIDEECC--VLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCGGGCCEEEEEECTTSC--EEEEEETTSCEEEEETTTTE
T ss_pred             EeCCCeEEEEeCCCCeeeE---EEccCCCCCceEEEEECCCCC--EEEEEcCCCeEEEEEcCCcc
Confidence            5678999999998765433   4555  788999999999999  99999999999999998753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.39  E-value=3.9e-12  Score=66.92  Aligned_cols=54  Identities=28%  Similarity=0.497  Sum_probs=46.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      |+.|+.|++||.. +..   +..+.+|...|.+++|+|++.  +|++++.|+.|++||..
T Consensus        34 ~~~d~~v~iWd~~-~~~---~~~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vWd~~   87 (577)
T 2ymu_A           34 ASDDKTVKLWNRN-GQL---LQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRN   87 (577)
T ss_dssp             EETTSEEEEECTT-SCE---EEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT
T ss_pred             EeCCCEEEEEECC-CCE---EEEEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEECC
Confidence            5678999999964 332   336889999999999999999  99999999999999964

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.38  E-value=6.1e-12  Score=62.78  Aligned_cols=59  Identities=25%  Similarity=0.383  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++|++.+ +...  ...+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus        60 ~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~  119 (368)
T 3mmy_A           60 GSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTAKMWDLSSNQ  119 (368)
T ss_dssp             EETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE
T ss_pred             ECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcEEEEEcCCCC
Confidence            56789999999986 3322  235778999999999999999  99999999999999998763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.37  E-value=5.1e-12  Score=63.82  Aligned_cols=58  Identities=14%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.|++||+.++....   .+.+|...|.+++|+|++.  ++++++.|+.|++|++.+++
T Consensus       310 ~~~~~~i~v~d~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          310 VPYGSTIAVYTVYSGEQIT---MLKGHYKTVDCCVFQSNFQ--ELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EEETTEEEEEETTTCCEEE---EECCCSSCEEEEEEETTTT--EEEEEETTSCEEEEEECC--
T ss_pred             EecCCEEEEEECcCCccee---eeccCCCeEEEEEEcCCCC--EEEEECCCCeEEEEeCCCCC
Confidence            3467899999998765443   6788999999999999999  99999999999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.37  E-value=4.1e-12  Score=68.57  Aligned_cols=56  Identities=23%  Similarity=0.434  Sum_probs=48.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+|++.  .+++++.|++|++||...
T Consensus       448 gs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          448 GSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             EETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTS
T ss_pred             EeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCC
Confidence            6789999999998765333   6789999999999999999  899999999999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.37  E-value=8.8e-12  Score=61.56  Aligned_cols=60  Identities=15%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecC--CCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSH--PNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++|++.++. .......+.+|...|.+++|+|  ++.  ++++++.|+.|++||++++
T Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           29 CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCEEEEEECTT
T ss_pred             eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeEEEEecCCC
Confidence            5678999999997643 2233456788999999999999  477  8999999999999999765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.36  E-value=5e-12  Score=64.49  Aligned_cols=58  Identities=19%  Similarity=0.382  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEe--ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+  .+|...|.+++|+|++.  .+++++.|+.|++||+++++
T Consensus       150 ~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVL---TLGPDVHPDTIYSVDWSRDGA--LICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             EETTSCEEEEETTTTEEEE---EECTTTCCSCEEEEEECTTSS--CEEEEETTSEEEEEETTTTE
T ss_pred             EcCCCEEEEEECCCCCccE---EEecCCCCCceEEEEECCCCC--EEEEEecCCcEEEEeCCCCc
Confidence            5678999999998764333   45  67899999999999998  89999999999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.36  E-value=8.2e-12  Score=62.73  Aligned_cols=58  Identities=7%  Similarity=0.004  Sum_probs=47.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEe-ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEI-DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .. ..+...+.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       145 ~s~dg~i~~wd~~~~~~~~---~~~~~~~~~i~~~~~~pdg~--~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          145 ADNRGTIGFQSYEDDSQYI---VHSAKSDVEYSSGVLHKDSL--LLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             EETTCCEEEEESSSSCEEE---EECCCSSCCCCEEEECTTSC--EEEEECTTSCEEEEESSCTT
T ss_pred             EeCCCcEEEEECCCCcEEE---EEecCCCCceEEEEECCCCC--EEEEEcCCCEEEEEECCCCC
Confidence            5779999999998765422   22 34556799999999999  99999999999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.35  E-value=7e-12  Score=63.96  Aligned_cols=62  Identities=21%  Similarity=0.412  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceE----eeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++|++.++...    .....+.+|...|.+++|+|++.. ++++++.|+.|++||+++++
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~  165 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGA  165 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTE
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCC
Confidence            567999999999765211    233467889999999999999833 89999999999999998763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.35  E-value=3.6e-12  Score=63.62  Aligned_cols=60  Identities=15%  Similarity=0.359  Sum_probs=49.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.++........+.+|...|.+++|+|++.  .+++++.|+.+++||++++
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE--KIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS--EEEEEETTSCEEEEESCSH
T ss_pred             EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC--EEEEecCCCCEEEEECCCC
Confidence            56789999999987654432112267899999999999999  9999999999999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.34  E-value=4.2e-12  Score=63.29  Aligned_cols=61  Identities=10%  Similarity=0.024  Sum_probs=48.0

Q ss_pred             ccccCeEEEEECCCCceE----------------eeeEEeecccccEeEEEecCCCCcEEEE-EecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEV----------------RQHLEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+......                .....+.+|...|.+++|+|++.  .++ +++.|+.+++|++.+.+
T Consensus       278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR--GLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST--TEEEEEETTSEEEEEEECC--
T ss_pred             EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC--eEEEEecCCCcEEEEECCCcc
Confidence            567899999998643211                34456788999999999999998  666 89999999999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.34  E-value=1.1e-11  Score=64.00  Aligned_cols=58  Identities=19%  Similarity=0.360  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...+.+++|+|++.  .+++++.|+.|++||+++++
T Consensus       286 ~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          286 GSYDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERK--RCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             EETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTT--EEEEEETTSCEEEEETTTTE
T ss_pred             EeCCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCc
Confidence            5678999999998765333   5778999999999999999  99999999999999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.34  E-value=9.6e-12  Score=63.17  Aligned_cols=58  Identities=12%  Similarity=0.093  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCC-CcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPN-KQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...+.+++|+|++ .  ++++++.|+.|++|++.++.
T Consensus       281 ~~~dg~v~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~--~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          281 SGRDNTVLLWNPESAEQLS---QFPARGNWCFKTKFAPEAPD--LFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EESSSEEEEECSSSCCEEE---EEECSSSCCCCEEECTTCTT--EEEECCSSSEEEEEESCCCC
T ss_pred             EeCCCCEEEeeCCCCccce---eecCCCCceEEEEECCCCCC--EEEEEecCCcEEEEEccCCC
Confidence            5678999999998765333   677899999999999998 6  89999999999999997653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.33  E-value=1.4e-11  Score=62.95  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=46.0

Q ss_pred             ccccCeEEEEECCCCceEeee----EEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQH----LEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++......    ....+|...|.+++|+|++.  .+++++.|+.|++||+++.
T Consensus       225 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS--EEEEEETTSEEEEEEC---
T ss_pred             EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEECCCC
Confidence            567899999999876533321    11257889999999999999  9999999999999998753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.33  E-value=1.3e-11  Score=69.50  Aligned_cols=58  Identities=31%  Similarity=0.630  Sum_probs=50.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||..++....   .+.+|...|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus       633 ~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd~~~~~  690 (1249)
T 3sfz_A          633 CGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWDSATGK  690 (1249)
T ss_dssp             EETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             EeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEECCCCc
Confidence            5678999999998865433   6788999999999999999  99999999999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.33  E-value=6e-12  Score=66.25  Aligned_cols=52  Identities=27%  Similarity=0.514  Sum_probs=44.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ++.|+.|++||.. +...   ..+.+|.+.|.+++|+|++.  +|++++.|+.|++||
T Consensus       526 ~~~dg~v~lwd~~-~~~~---~~~~~h~~~v~~~~fs~dg~--~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          526 ASDDKTVKLWNRN-GQLL---QTLTGHSSSVWGVAFSPDGQ--TIASASSDKTVKLWN  577 (577)
T ss_dssp             EETTSEEEEECTT-SCEE---EEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEEC
T ss_pred             EECcCEEEEEeCC-CCEE---EEEcCCCCCEEEEEEcCCCC--EEEEEeCCCEEEEeC
Confidence            5678999999974 3323   36789999999999999999  899999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.32  E-value=1.3e-11  Score=62.47  Aligned_cols=58  Identities=14%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEee------cc---------------cccEeEEEecCCC----------CcEEEEEec
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEID------AH---------------VGGVNDIAFSHPN----------KQLYVITCG   50 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~~~l~s~~   50 (65)
                      ++.|+.|++||+.++....   .+.      +|               ...|.+++|+|++          .  ++++++
T Consensus       309 ~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~l~s~~  383 (397)
T 1sq9_A          309 AGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE--SLCCVC  383 (397)
T ss_dssp             EETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC--EEEEEE
T ss_pred             EeCCCeEEEEEcCCCceeE---EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc--eEEEec
Confidence            5678999999998765333   455      66               8899999999998          6  899999


Q ss_pred             CCCcEEEEECCCCC
Q 039404           51 DDKTIKVWDATNGV   64 (65)
Q Consensus        51 ~~~~i~~w~~~~~~   64 (65)
                      .|+.|++|++.+|+
T Consensus       384 ~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          384 LDRSIRWFREAGGK  397 (397)
T ss_dssp             TTTEEEEEEEEC--
T ss_pred             CCCcEEEEEcCCCC
Confidence            99999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.31  E-value=2.2e-11  Score=62.25  Aligned_cols=60  Identities=20%  Similarity=0.384  Sum_probs=49.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++|++.++. ......+.+|...|.+++|+|++.  ++++++.|+.|++|++.+++
T Consensus       323 g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALSPDGR--ILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             CTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEECTTSS--EEEEECTTSEEEEEECCC--
T ss_pred             ecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEECCCCC--EEEEEeCCCcEEEEECCCCc
Confidence            4478999999997653 333345678999999999999999  99999999999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.31  E-value=2.1e-12  Score=65.12  Aligned_cols=61  Identities=15%  Similarity=0.309  Sum_probs=46.2

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +++.|+.|++|++.++. ......+.+|...|.+++|+|++.  ++++++.|+.+++||+.+++
T Consensus        28 ~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           28 TTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             CCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC------
T ss_pred             EecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEcCCCC
Confidence            35678999999998652 233346788999999999999998  89999999999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.31  E-value=4.1e-12  Score=67.51  Aligned_cols=59  Identities=12%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEE--EecCCC-CcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDI--AFSHPN-KQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+.|++|++||+.++..  +...+.+|...|.++  .|++++ .  ++++++.|+++++||++++
T Consensus       282 sgs~DgtV~lWD~~~~~~--~~~~~~~H~~~V~sv~~~~s~~g~~--~laS~S~D~tvklWD~~~~  343 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEV--PSFYDQVHDSYILSVSTAYSDFEDT--VVSTVAVDGYFYIFNPKDI  343 (524)
T ss_dssp             EEETTSEEEEEETTBCSS--CSEEEECSSSCEEEEEEECCTTSCC--EEEEEETTSEEEEECGGGH
T ss_pred             EEeCCCEEEEEECCCCCC--ceEEeecccccEEEEEEEcCCCCCe--EEEEeccCCeEEEEECCCC
Confidence            367899999999986422  223477899999999  567776 6  8999999999999998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.1e-11  Score=61.11  Aligned_cols=60  Identities=22%  Similarity=0.419  Sum_probs=49.5

Q ss_pred             ccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCC---CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHP---NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.... .......+.+|...|.+++|+|+   +.  ++++++.|+.+++||++++
T Consensus       178 ~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          178 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS--YLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE--EEEEEETTSCEEEEEESST
T ss_pred             EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC--eEEEEeCCCEEEEEeCCCC
Confidence            5678999999987543 23344567789999999999999   67  8999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.29  E-value=2.1e-11  Score=62.99  Aligned_cols=57  Identities=23%  Similarity=0.579  Sum_probs=48.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++...   ..+.+|.+.|.+++|++++   .+++++.|+.|++||+++++
T Consensus       138 gs~dg~i~vwd~~~~~~~---~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vwd~~~~~  194 (464)
T 3v7d_B          138 GADDKMIRVYDSINKKFL---LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGC  194 (464)
T ss_dssp             EETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECSTT---EEEEEETTSCEEEEETTTTE
T ss_pred             EcCCCcEEEEECCCCcEE---EEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEEECCCCc
Confidence            678999999999876533   3678999999999998765   58899999999999998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.29  E-value=3.3e-11  Score=60.13  Aligned_cols=57  Identities=23%  Similarity=0.376  Sum_probs=48.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEe--cCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++...    ....|...|.+++|  ++++.  ++++++.|+.+++||+++++
T Consensus       104 ~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred             EcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence            567899999999876533    25568899999999  88888  89999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.28  E-value=5.8e-11  Score=60.69  Aligned_cols=59  Identities=15%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.....  ....+.+|...|.+++|+|++.  .+++++.|+.|++||+++++
T Consensus       192 ~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~~  250 (401)
T 4aez_A          192 GSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRSDGL--QLASGGNDNVVQIWDARSSI  250 (401)
T ss_dssp             EETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCSS
T ss_pred             EcCCCCEEEEecccCcc--eeeEEcCCCCCeeEEEEcCCCC--EEEEEeCCCeEEEccCCCCC
Confidence            56789999999974321  2235778999999999999998  99999999999999998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.28  E-value=4e-11  Score=61.90  Aligned_cols=61  Identities=23%  Similarity=0.368  Sum_probs=48.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+...........+..|...+.+++|+|.+.. ++++++.|+.|++||+++.
T Consensus       250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~-~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF-ILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             EETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCT
T ss_pred             EeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC-EEEEEeCCCeEEEEeCCCC
Confidence            467899999999865322233356789999999999998874 6889999999999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.28  E-value=5.2e-11  Score=58.93  Aligned_cols=58  Identities=24%  Similarity=0.408  Sum_probs=49.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+..|...+.+++|+|++.  .+++++.|+.+++||+++++
T Consensus       159 ~~~dg~v~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDISNDGT--KLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             EETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE
T ss_pred             EeCCCcEEEEeCCCCceee---eeecccCceEEEEECCCCC--EEEEEecCCcEEEEECCCCc
Confidence            5678999999998764333   5778899999999999998  89999999999999998763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.28  E-value=8.5e-12  Score=66.33  Aligned_cols=56  Identities=13%  Similarity=0.166  Sum_probs=47.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|+.|++||+.++....   .+.+|.+.|.+++|+|+++  .+++++.|++|++||+..
T Consensus       373 ~~~d~tv~lwd~~~~~~~~---~l~gH~~~V~sva~Sp~g~--~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          373 SDGASSLRAVPSRAAFAVH---PLVSRETTITAIGVSRLHP--MVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             ECSSSEEEEEETTCTTCCE---EEEECSSCEEEEECCSSCC--BCEEEETTTEEECCBSCS
T ss_pred             eCCCCcEEEEECcccccce---eeecCCCceEEEEeCCCCC--eEEEEECCCEEEEEechH
Confidence            4568899999998754333   4678999999999999999  899999999999999754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.27  E-value=4.5e-11  Score=60.51  Aligned_cols=58  Identities=17%  Similarity=0.388  Sum_probs=48.4

Q ss_pred             cccc---CeEEEEECCCCceEeeeEEeec-------------ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSR---HIVQIYPCNGGDEVRQHLEIDA-------------HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~---~~i~i~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|   +.|++||+.++....   .+.+             |...|.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEE---EECBC--------CCBSBSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTE
T ss_pred             EecCCCCceEEEEECCCCcccc---eeccCcccccccccccccCCcEEEEEECCCCC--EEEEEeCCCeEEEEEcCCCc
Confidence            4556   899999998765333   5666             889999999999999  99999999999999998763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.27  E-value=2.5e-11  Score=61.46  Aligned_cols=60  Identities=15%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             ccccCeEEEEECCCCce-EeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDE-VRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.+... ......+ +|...+.+++|+| ++.  ++++++.|+.+++||+++++
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~--~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST--KLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC--EEEEEESSSEEEEEETTBTT
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC--EEEEEcCCCcEEEEECCCCc
Confidence            56789999999976221 1111123 6889999999999 888  89999999999999998753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.27  E-value=4.9e-11  Score=60.69  Aligned_cols=56  Identities=9%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             eEEEEECCCCce-EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+.+|++..... ......+.+|...|.+++|+|++.  +|++++.|++|++||+++++
T Consensus       246 ~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~--~lasgs~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          246 VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE--LAVLASNDNSIALVKLKDLS  302 (365)
T ss_dssp             EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC--EEEEEETTSCEEEEETTTTE
T ss_pred             EEeecccccceecceeeeeecCCCCCeEeEEECCCCC--ceEEEcCCCEEEEEECCCCc
Confidence            567788765432 223345778899999999999999  99999999999999998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.27  E-value=4.8e-12  Score=65.82  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             ccccCeEEEEECCCC--------ceEeeeEEeecccccEeEEEecCC-CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.+.        ........+.+|...|.+++|+|. +.  ++++++.|++|++||++++
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSS
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCC
Confidence            456899999997542        111223356678999999999998 56  8999999999999999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.27  E-value=1.5e-11  Score=62.01  Aligned_cols=58  Identities=7%  Similarity=0.064  Sum_probs=44.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeec-ccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|+.|++||+..+........+.. |...|.+++|+|++.  ++++++.|+.+++||+.
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV--LLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS--EEEEEESSSCEEEEEEC
T ss_pred             EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC--EEEEEeCCCEEEEEEEE
Confidence            56789999999987543222335666 899999999999999  99999999999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.27  E-value=2.2e-11  Score=63.36  Aligned_cols=55  Identities=11%  Similarity=0.091  Sum_probs=46.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|+.|++||+.++...   ....+|...+.+++|+|++.  ++++++.|+.|++||.+
T Consensus       168 ~s~Dg~v~iwD~~~~~~~---~~~~~~~~~v~~v~wspdg~--~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKV---CATLPSTVAVTSVCWSPKGK--QLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EETTSCEEEEEESSSEEE---EEEECGGGCEEEEEECTTSS--CEEEEETTSCEEEECTT
T ss_pred             EECCCeEEEEEcCCCcce---eeccCCCCceeEEEEcCCCC--EEEEEcCCCcEEEEccC
Confidence            577999999999876322   23456888999999999999  89999999999999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.26  E-value=8.2e-11  Score=57.79  Aligned_cols=57  Identities=23%  Similarity=0.557  Sum_probs=47.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...+.+++|+|++.   +++++.|+.|++||+++++
T Consensus       201 ~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGDVLR---TYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECTTSC---EEEEETTSEEEEECTTTCC
T ss_pred             ccCCCeEEEEECCchhhhh---hhhcCCceEEEEEEecCCC---EEEEecCCEEEEEECCCCc
Confidence            5678999999998765333   6778999999999999885   6688899999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.26  E-value=2.4e-11  Score=60.90  Aligned_cols=59  Identities=27%  Similarity=0.516  Sum_probs=49.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++|++.++. ......+.+|...|.+++|+|++.  ++++++.|+.+++||+.++
T Consensus        26 ~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C           26 CPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             ECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred             EeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEECCCC
Confidence            4578999999997753 223446788999999999999999  9999999999999998765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.1e-10  Score=58.28  Aligned_cols=59  Identities=22%  Similarity=0.223  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.+...  ....+..|...+.+++|+|++.  .+++++.|+.+++||+++++
T Consensus       193 ~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          193 GHKDGKISKYDVSNNYE--YVDSIDLHEKSISDMQFSPDLT--YFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             EETTSEEEEEETTTTTE--EEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             EcCCCEEEEEECCCCcE--eEEEEecCCCceeEEEECCCCC--EEEEecCCceEEEEECCCCc
Confidence            56789999999987322  2235778899999999999999  89999999999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.26  E-value=4.2e-11  Score=65.08  Aligned_cols=58  Identities=24%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||..++....   .+.+|...|.+++|+|++.  .+++++.|+.|++|++.+++
T Consensus        31 ~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~   88 (814)
T 3mkq_A           31 TLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFNYNTGE   88 (814)
T ss_dssp             EETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEETTTCC
T ss_pred             EeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            4668999999998765333   5778999999999999999  99999999999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.25  E-value=4.7e-11  Score=61.83  Aligned_cols=58  Identities=19%  Similarity=0.185  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....  ..+.+|...|.+++|+ ++.  ++++++.|+.|++||+.+++
T Consensus       216 ~~~d~~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~s-d~~--~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          216 SDRDEHIKISHYPQCFIVD--KWLFGHKHFVSSICCG-KDY--LLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             EETTSCEEEEEESCTTCEE--EECCCCSSCEEEEEEC-STT--EEEEEESSSEEEEEETTTCC
T ss_pred             EcCCCcEEEEECCCCceee--eeecCCCCceEEEEEC-CCC--EEEEEeCCCeEEEEECCCCc
Confidence            5678999999998765332  1255799999999999 888  99999999999999998774

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.25  E-value=8.9e-11  Score=57.65  Aligned_cols=57  Identities=11%  Similarity=0.085  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.+.....   .+..|...+.+++|+|++.  .+++++.|+.+++|++...
T Consensus        35 ~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           35 VSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             EETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEETTCC
T ss_pred             EEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEEeeec
Confidence            5779999999997654333   5667889999999999999  9999999999999998654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.25  E-value=7.7e-11  Score=59.08  Aligned_cols=59  Identities=15%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.++. ......+..|...+.+++|+|+  +.  .+++++.|+.+++||++++
T Consensus        75 ~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             EETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTT
T ss_pred             eccCCEEEEEEcCCCc-eeEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCC
Confidence            5678999999998764 2234456778999999999999  78  8999999999999999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.25  E-value=5.6e-11  Score=62.72  Aligned_cols=57  Identities=14%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeec-ccccEeEEEecC----------CCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDA-HVGGVNDIAFSH----------PNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++|++.++....   .+.+ |...|.+++|+|          ++.  ++++++.|+.|++|++.++
T Consensus       506 ~~~dg~i~iw~~~~~~~~~---~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          506 GDVMGKILLYDLQSREVKT---SRWAFRTSKINAISWKPAEKGANEEEIEED--LVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             EETTSCEEEEETTTTEEEE---CCSCCCSSCEEEEEECCCC------CCSCC--EEEEEETTSCEEEEESSCT
T ss_pred             cCCCCeEEEeeCCCCccee---EeecCCCCceeEEEEcCccccccccccCCC--EEEEEcCCCcEEEEECCCC
Confidence            5678999999998765433   4566 899999999999          888  9999999999999999875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.24  E-value=6.2e-11  Score=60.75  Aligned_cols=59  Identities=8%  Similarity=0.134  Sum_probs=46.3

Q ss_pred             ccCeEEEEECCCCceEeeeE-----EeecccccEeEEEecCCC-CcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHL-----EIDAHVGGVNDIAFSHPN-KQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|+.|++||+..........     .+.+|...|.+++|+|++ .  ++++++.|+.|++||+++++
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          196 DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN--TFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT--EEEEEETTSCEEEEETTTCS
T ss_pred             CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc--EEEEEeCCCeEEEEECcCCc
Confidence            68999999997422111110     245788999999999998 7  99999999999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.23  E-value=1e-10  Score=65.24  Aligned_cols=57  Identities=18%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeec------------------ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDA------------------HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.+ +||+.++....   .+..                  |...|.+++|+|++.  ++++++.|+.|++||++++
T Consensus       170 g~~dg~v-lWd~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~--~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          170 SYEYVTL-TYSLVENEIKQ---SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL--HIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             ECSSCEE-EEETTTTEEEE---EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS--EEEEEETTCCEEEEETTTC
T ss_pred             EeCCCcE-EEECCCCceEE---EEecccCCcCCCcccccccccccCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCC
Confidence            5678999 99998764332   3333                  356799999999999  9999999999999999876


Q ss_pred             C
Q 039404           64 V   64 (65)
Q Consensus        64 ~   64 (65)
                      +
T Consensus       244 ~  244 (902)
T 2oaj_A          244 H  244 (902)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.23  E-value=1.1e-10  Score=60.23  Aligned_cols=56  Identities=25%  Similarity=0.482  Sum_probs=45.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|  ++.  .+++++.|+.|++||+.+++
T Consensus       149 g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          149 GLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             EESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESSSCC
T ss_pred             EeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEECCCCc
Confidence            5678999999988765333   57789999999988  566  89999999999999988764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.22  E-value=1.5e-10  Score=58.66  Aligned_cols=55  Identities=18%  Similarity=0.338  Sum_probs=43.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeec--ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|+.|++||+.++....   .+.+  |...+..++|+|++.  ++++++ |+.|++|++++
T Consensus       326 ~s~d~~i~iwd~~~~~~~~---~l~~~~~~~~~~~~~~s~~g~--~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          326 LNDKRTIDIYDANSGGLVH---QLRDPNAAGIISLNKFSPTGD--VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTCCCCEEEEETTTCCEEE---EECBTTBCSCCCEEEECTTSS--EEEEEE-TTEEEEEECC-
T ss_pred             cCCCCeEEEEecCCCceee---eecCCCCCceEEEEEEecCcc--EEEEec-CCcEEEEecCC
Confidence            5679999999998765433   4554  456677889999999  899986 99999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.21  E-value=1.1e-10  Score=63.41  Aligned_cols=57  Identities=26%  Similarity=0.524  Sum_probs=49.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++|++.++....   .+.+|...|.+++|+|++.  .+++++.|+.+++|++.++
T Consensus        73 ~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           73 GSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGT
T ss_pred             EeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCC
Confidence            5678999999998765443   5778999999999999999  8999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.21  E-value=1.5e-10  Score=57.32  Aligned_cols=58  Identities=12%  Similarity=0.233  Sum_probs=46.4

Q ss_pred             cCeEEEEECCCCceEeeeEEee--cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|++|++.++........+.  .|...+.+++|+|++.  .+++++.|+.+++||+.+++
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~  130 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC-
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCC
Confidence            8999999997654333222333  6888999999999999  89999999999999998754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.21  E-value=1.2e-10  Score=57.98  Aligned_cols=61  Identities=23%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             ccccCeEEEEECCCC--c-eEeeeEEeecccc---------cEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGG--D-EVRQHLEIDAHVG---------GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~--~-~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+++|++...  . .......+..|..         .|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus       212 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--FLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC--CEEEEETTSCEEEEETTTTE
T ss_pred             EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC--EEEEecCCceEEEEcCccHh
Confidence            567899999998764  0 0112234566644         899999999999  89999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.21  E-value=1.6e-10  Score=58.41  Aligned_cols=58  Identities=17%  Similarity=0.288  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.++.|++||+.++....   .+.+|...|.+++|+|++.. ++++++.|+.+++||++++
T Consensus       162 ~~~~~~v~~~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~-ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          162 GTRGPKVQLCDLKSGSCSH---ILQGHRQEILAVSWSPRYDY-ILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             EESSSSEEEEESSSSCCCE---EECCCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTCS
T ss_pred             EcCCCeEEEEeCCCcceee---eecCCCCcEEEEEECCCCCc-EEEEEcCCCcEEEEECCCC
Confidence            4678899999998754333   57789999999999999884 5889999999999999764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.21  E-value=7e-11  Score=64.65  Aligned_cols=59  Identities=22%  Similarity=0.512  Sum_probs=49.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++|++..+. ......+.+|.+.|.+++|+|+  +.  .+++++.|+.|++||+.++
T Consensus        27 g~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~vwd~~~~   87 (753)
T 3jro_A           27 CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLIWKEENG   87 (753)
T ss_dssp             EETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEEEEEETT
T ss_pred             EECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEEEECCCC
Confidence            5679999999987432 3344567889999999999987  77  9999999999999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.20  E-value=2.1e-10  Score=60.60  Aligned_cols=58  Identities=26%  Similarity=0.297  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccc---cEeEEEecCC-CCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVG---GVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||..+....   ..+.+|..   .|.+++|+|+ +.  .+++++.|+.+++||+++++
T Consensus       179 ~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          179 VGDDGSVVFYQGPPFKFS---ASDRTHHKQGSFVRDVEFSPDSGE--FVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             EETTTEEEEEETTTBEEE---EEECSSSCTTCCEEEEEECSTTCC--EEEEEETTCCEEEEETTTCC
T ss_pred             EeCCCcEEEEeCCCccee---eeecccCCCCceEEEEEECCCCCC--EEEEEeCCCeEEEEECCCCC
Confidence            567899999998765433   35778888   8999999999 88  89999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.19  E-value=1e-10  Score=66.07  Aligned_cols=57  Identities=19%  Similarity=0.454  Sum_probs=49.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.++....   .+.+|...|.+++|+|++.  .+++++.|+.+++||++++
T Consensus       719 g~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp~~~--~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          719 GSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSPDDE--LLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             EETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECSSTT--EEEEEESSSEEEEEEGGGT
T ss_pred             EeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEecCCC--EEEEEECCCeEEEEeCCCC
Confidence            5678999999998765443   5778999999999999999  9999999999999998765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.2e-10  Score=59.01  Aligned_cols=57  Identities=9%  Similarity=-0.053  Sum_probs=48.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.++....   .+..|...+.+++|+|++.  ++++++.|+.|++|++.++
T Consensus       306 ~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          306 CSMDGSVRLWSLKQNTLLA---LSIVDGVPIFAGRISQDGQ--KYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             EETTSEEEEEETTTTEEEE---EEECTTCCEEEEEECTTSS--EEEEEETTSCEEEEECHHH
T ss_pred             EeCCCcEEEEECCCCcEeE---ecccCCccEEEEEEcCCCC--EEEEEECCCeEEEEECCCC
Confidence            5678999999998765333   5677888999999999999  9999999999999998654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.17  E-value=2.3e-10  Score=57.35  Aligned_cols=61  Identities=18%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             ccccCeEEEEECCCC---------------ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGG---------------DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+++||+...               ........+.+|...+.+++|+|++.  ++++++.|+.+++||+++++
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS--RVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS--EEEEEETTTEEEEEEGGGTT
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC--EEEEEeCCCEEEEEECCCCc
Confidence            567899999996411               00112335668889999999999999  99999999999999997653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.17  E-value=2.5e-10  Score=58.89  Aligned_cols=55  Identities=25%  Similarity=0.556  Sum_probs=42.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++....   .+.+|...|.+++|+  +.  .+++++.|+.|++||+.++
T Consensus       135 g~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          135 GSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             EETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEETTTT
T ss_pred             EECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEECCcC
Confidence            5678888999987765333   567888888888886  45  7888888888988888765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.16  E-value=9.9e-11  Score=58.35  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEE------ecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIA------FSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++.  .....+.+|...|.+++      |+|++.  .+++++.|+.+++||+++++
T Consensus        86 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             EETTSCEEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCS
T ss_pred             ecCCCeEEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCC
Confidence            5678999999998754  12235778999999995      467888  89999999999999998764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.16  E-value=2.9e-10  Score=62.25  Aligned_cols=59  Identities=15%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++. ......+.+|...|.+++|+|+  +.  .+++++.|+.|++||++++
T Consensus        73 ~s~Dg~I~vwd~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           73 CSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             EETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSS
T ss_pred             EeCCCeEEEEECCCCc-ccccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecC
Confidence            5779999999998753 2334467789999999999999  88  8999999999999999876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.16  E-value=4.3e-10  Score=58.09  Aligned_cols=61  Identities=20%  Similarity=0.371  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++|++....    .......+.+|...|.+++|+|.+.. ++++++.|+.|++||++++
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCS
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCC
Confidence            5678999999997632    22223456789999999999994443 8999999999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.15  E-value=4.7e-10  Score=56.88  Aligned_cols=57  Identities=9%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++|+.. +...   ..+..|...|.+++|+|++.  .+++++.|+.+++||+.+++
T Consensus       126 ~~~dg~i~i~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          126 GVENGELRLWNKT-GALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             EETTSCEEEEETT-SCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred             EeCCCeEEEEeCC-CCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence            5678999999943 3322   25778999999999999999  89999999999999998753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.15  E-value=8.8e-11  Score=59.67  Aligned_cols=61  Identities=16%  Similarity=0.412  Sum_probs=48.6

Q ss_pred             ccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCC-CCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++|++.... .......+.+|...|.+++|+|+ +.  ++++++.|+.|++||+.+++
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTS
T ss_pred             EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCc
Confidence            4678999999997621 11133467789999999999998 66  89999999999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.15  E-value=4.1e-10  Score=62.91  Aligned_cols=56  Identities=9%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++||+.++....   .+. |...|.+++|+|++.  ++++++.|+.|++||++++
T Consensus        75 ~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           75 INAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             EETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTT
T ss_pred             EECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCC
Confidence            5679999999998765443   343 567899999999999  9999999999999999765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.14  E-value=1.7e-10  Score=59.24  Aligned_cols=58  Identities=10%  Similarity=0.078  Sum_probs=41.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecc---cccEeEEEecCCCCcEEE------------EEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAH---VGGVNDIAFSHPNKQLYV------------ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l------------~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|++|++||+.+++...   .+.+|   ...+.+++|+|++.  ++            ++++.|+++++||..+++
T Consensus       199 gS~D~TIkIWDl~TGk~l~---tL~g~~~~v~~v~~vafSpdG~--~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          199 TTIMNNIVIWNLKTGQLLK---KMHIDDSYQASVCHKAYSEMGL--LFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCC---CCCEEEEEEETTE--EEEEEC------------CCEEEEEEETTTTE
T ss_pred             ecCCCcEEEEECCCCcEEE---EEcCCCcceeeeEEEEECCCCC--EEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            5789999999999876544   45543   23567789999887  54            567889999999998763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.13  E-value=5e-10  Score=57.42  Aligned_cols=58  Identities=21%  Similarity=0.399  Sum_probs=44.6

Q ss_pred             ccccCeEEEEECCCCce-EeeeEEeecccc------------cEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDE-VRQHLEIDAHVG------------GVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~------------~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      |+.|+.|++||+.++.. ......+.+|..            .|.+++|+|++.  ++++++. +.|++||+++
T Consensus       245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR--YMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS--EEEEEES-SEEEEEETTC
T ss_pred             EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC--EEEEeeC-CeEEEEeCCC
Confidence            56789999999987542 111234666654            899999999999  8999888 9999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.13  E-value=9.1e-11  Score=60.23  Aligned_cols=58  Identities=12%  Similarity=0.268  Sum_probs=45.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEee-cccccEeEEEecC----CCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEID-AHVGGVNDIAFSH----PNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+..+....   .+. .|...|.+++|+|    ++.  ++++++.|+.|++||+++++
T Consensus       232 ~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          232 GTTRGIIDIWDIRFNVLIR---SWSFGDHAPITHVEVCQFYGKNSV--IVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             EETTSCEEEEETTTTEEEE---EEBCTTCEEEEEEEECTTTCTTEE--EEEEESTTEEEEEEETTTTE
T ss_pred             EcCCCeEEEEEcCCccEEE---EEecCCCCceEEEEeccccCCCcc--EEEEEcCCCcEEEEEcCCCc
Confidence            6778999999998754332   343 6677899996654    566  89999999999999998763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.8e-10  Score=61.47  Aligned_cols=54  Identities=9%  Similarity=0.209  Sum_probs=43.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccc-----cEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVG-----GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.+++|+.+.  ...   .+. |..     .+.+++|+|+++  +|++++.|+.|++|++.++
T Consensus       103 ~s~dg~V~iwd~~~--~l~---~l~-~~~~~~~~sv~svafSPDG~--~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A          103 LSNNGNVSVFKDNK--MLT---NLD-SKGNLSSRTYHCFEWNPIES--SIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             EETTSCEEEEETTE--EEE---ECC-CSSCSTTTCEEEEEECSSSS--CEEEEETTSEEEEEECCCC
T ss_pred             EeCCCcEEEEeCCc--eee---ecc-CCCccccccEEEEEEcCCCC--EEEEEcCCCEEEEEECCCC
Confidence            57899999999643  222   344 443     599999999999  9999999999999999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.11  E-value=7.4e-10  Score=57.14  Aligned_cols=59  Identities=20%  Similarity=0.459  Sum_probs=47.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++........+.+|...|.+++|  ++.  .+++++.|+.+++||+++++
T Consensus       229 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~s~~~dg~i~vwd~~~~~  287 (435)
T 1p22_A          229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK--YIVSASGDRTIKVWNTSTCE  287 (435)
T ss_dssp             EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTTCC
T ss_pred             eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC--EEEEEeCCCeEEEEECCcCc
Confidence            567899999998775544333467789999999999  566  89999999999999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.11  E-value=5.3e-10  Score=55.61  Aligned_cols=61  Identities=8%  Similarity=-0.106  Sum_probs=47.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC-CCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA-TNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~-~~~   63 (65)
                      ++.|+.|++|++..+........+.+|...|.+++|+|++.. .+++++.|+.|++|++ .++
T Consensus        29 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEECSSSSS
T ss_pred             EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEEeccCC
Confidence            567899999998765422222345578999999999998762 3778889999999999 765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.10  E-value=1.8e-10  Score=59.63  Aligned_cols=61  Identities=21%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             ccccCeEEEEECCCCceEe-eeEEeecccccEeEEEecCC---CCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVR-QHLEIDAHVGGVNDIAFSHP---NKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.+.+|++.+..... ....+.+|...|.+++|+|+   +.  ++++++.|+.|++||+.++.
T Consensus       167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          167 ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ--FIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE--EEEEEETTSCEEEEEESCTT
T ss_pred             EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc--EEEEEcCCCcEEEEECCCCc
Confidence            4567889999987654222 22246788999999999999   87  89999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.05  E-value=1.7e-09  Score=55.87  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEe--ecccccEeEEEecCCCCcEEEEEecCCCc----EEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLYVITCGDDKT----IKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~~----i~~w~~~~~   63 (65)
                      ++.|+.|++||+.++.........  ..|.+.|.+++|+|++.  .+++++.|+.    +.+||+...
T Consensus       378 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          378 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL--VCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE--EEEEECSSSSSCCEEEEEECCCC
T ss_pred             EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE--EEEEcccCCCCccEEEEEECCCC
Confidence            567999999999887644422111  36778899999999988  8999999997    999999754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.97  E-value=2.5e-09  Score=57.94  Aligned_cols=60  Identities=10%  Similarity=0.087  Sum_probs=44.8

Q ss_pred             CccccCeEEEEECCCCce--E--eeeEEe----ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDE--V--RQHLEI----DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~--~--~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.|+.|++|++.++..  .  -....+    .+|.+.|.+++|+|++    +++++.|+++++|++..+.
T Consensus       146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCCSSS
T ss_pred             EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECCCCc
Confidence            367899999999987631  0  112244    5677899999999976    5567789999999987653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.93  E-value=1.3e-08  Score=51.56  Aligned_cols=57  Identities=7%  Similarity=0.077  Sum_probs=44.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+..|. .+.+++|+|++.  .+ ++++.++.|++||+.+++
T Consensus         8 ~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~--~l~~~~~~d~~i~v~d~~~~~   65 (391)
T 1l0q_A            8 NSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGT--KVYVANAHSNDVSIIDTATNN   65 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSS--EEEEEEGGGTEEEEEETTTTE
T ss_pred             cCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCC--EEEEECCCCCeEEEEECCCCe
Confidence            4678999999998765433   455554 479999999998  55 677789999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.89  E-value=3.4e-08  Score=50.64  Aligned_cols=58  Identities=10%  Similarity=0.033  Sum_probs=45.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+..|...+.+++|+|++.  .+ ++++.++.|.+||+++++
T Consensus       187 ~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          187 QMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             EGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTE
T ss_pred             ECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCc
Confidence            4567899999998765333   4667888899999999998  55 556689999999998763

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.81  E-value=8.2e-08  Score=46.57  Aligned_cols=55  Identities=9%  Similarity=0.036  Sum_probs=43.6

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC-CC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN-GV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~-~~   64 (65)
                      +.++.|++||+.++...    .+..|...+.+++|+|++.  .+++++ ++.+.+||+.+ ++
T Consensus        19 ~~~~~i~~~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~-~~~i~~~d~~~~~~   74 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMR----VVWQTPELFEAPNWSPDGK--YLLLNS-EGLLYRLSLAGDPS   74 (297)
T ss_dssp             CCCEEEEEEETTTTEEE----EEEEESSCCEEEEECTTSS--EEEEEE-TTEEEEEESSSCCS
T ss_pred             CcceeEEEEeCCCCcee----eeccCCcceEeeEECCCCC--EEEEEc-CCeEEEEeCCCCCC
Confidence            45788999999876432    3445778899999999999  787765 78999999987 53

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.79  E-value=1.1e-07  Score=48.15  Aligned_cols=56  Identities=21%  Similarity=0.201  Sum_probs=42.4

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      +.|+.|++||+.++....   .+..+ ..+.+++|+|++.  .+ +++..++.|.+||+.+++
T Consensus        51 ~~d~~i~v~d~~~~~~~~---~~~~~-~~v~~~~~spdg~--~l~~~~~~~~~v~v~d~~~~~  107 (391)
T 1l0q_A           51 AHSNDVSIIDTATNNVIA---TVPAG-SSPQGVAVSPDGK--QVYVTNMASSTLSVIDTTSNT  107 (391)
T ss_dssp             GGGTEEEEEETTTTEEEE---EEECS-SSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCeEEEEECCCCeEEE---EEECC-CCccceEECCCCC--EEEEEECCCCEEEEEECCCCe
Confidence            468899999998765333   34433 3789999999998  55 455677999999998763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.76  E-value=2e-08  Score=51.48  Aligned_cols=61  Identities=16%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             ccccCeEEEEECCCCceEeeeE--EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.|.+||+.++.......  .+.+|...+.+++|++++.  ++++++.|+.+++||+.+++
T Consensus       140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCC
T ss_pred             eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCCce
Confidence            3456789999998765332111  2347788899999999888  89999999999999998753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.68  E-value=3.1e-07  Score=47.60  Aligned_cols=53  Identities=9%  Similarity=0.083  Sum_probs=42.7

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC---cEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK---TIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~---~i~~w~~~~~~   64 (65)
                      +.|++||+.... .   ..+.+|...+.+++|+|++.  .+++++.++   .|++||+.+++
T Consensus       159 ~~i~i~d~~g~~-~---~~l~~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~  214 (415)
T 2hqs_A          159 YELRVSDYDGYN-Q---FVVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGA  214 (415)
T ss_dssp             EEEEEEETTSCS-C---EEEEEESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCC
T ss_pred             ceEEEEcCCCCC-C---EEEeCCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCc
Confidence            689999997543 2   24667888999999999999  888887764   99999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.58  E-value=1e-06  Score=47.35  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=43.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC--CCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA--TNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~--~~~   63 (65)
                      ++.++.|.+||..++....   .+..+.. +..++|+|++.  ++++++.++.|.+||+  .++
T Consensus       155 ~~~d~~V~v~D~~t~~~~~---~i~~g~~-~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~  212 (543)
T 1nir_A          155 LRDAGQIALVDGDSKKIVK---VIDTGYA-VHISRMSASGR--YLLVIGRDARIDMIDLWAKEP  212 (543)
T ss_dssp             EGGGTEEEEEETTTCCEEE---EEECSTT-EEEEEECTTSC--EEEEEETTSEEEEEETTSSSC
T ss_pred             EcCCCeEEEEECCCceEEE---EEecCcc-cceEEECCCCC--EEEEECCCCeEEEEECcCCCC
Confidence            3457899999998765443   4542222 78999999999  8999999999999999  554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.51  E-value=2.4e-06  Score=44.35  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEE-EecCCC--cEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDK--TIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~--~i~~w~~~~~~   64 (65)
                      ..|++||+.++...    .+..+...+.+++|+|++.  .++ +++.++  .|.+||+.+++
T Consensus       203 ~~i~~~d~~tg~~~----~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          203 SALVIQTLANGAVR----QVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEETTTCCEE----EEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCC
T ss_pred             cEEEEEECCCCcEE----EeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEECCCCC
Confidence            48999999876532    3556777899999999999  565 665554  49999987763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.40  E-value=7.9e-06  Score=40.63  Aligned_cols=56  Identities=11%  Similarity=0.036  Sum_probs=40.6

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~~   64 (65)
                      ..++.|.+||..++....   .+..+.... .++|+|++.  .++.++ .++.+.+||..+++
T Consensus        17 ~~~~~v~~~d~~~~~~~~---~~~~~~~~~-~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~   73 (331)
T 3u4y_A           17 QHLRRISFFSTDTLEILN---QITLGYDFV-DTAITSDCS--NVVVTSDFCQTLVQIETQLEP   73 (331)
T ss_dssp             GGGTEEEEEETTTCCEEE---EEECCCCEE-EEEECSSSC--EEEEEESTTCEEEEEECSSSS
T ss_pred             cCCCeEEEEeCcccceee---eEEccCCcc-eEEEcCCCC--EEEEEeCCCCeEEEEECCCCc
Confidence            457899999998765433   233344455 999999998  555544 48899999998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.38  E-value=1.9e-06  Score=48.99  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=43.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC----------CcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD----------KTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~----------~~i~~w~~~~~   63 (65)
                      ++.++.+++||+.++....   ...+|...+..++|+|++.  .+++++.+          ..+.+||+.++
T Consensus       396 ~~~~~~v~~~d~~tg~~~~---~~~~~~~~v~~~~~SpDG~--~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSR--FIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSC--EEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             ECCCCeEEEEECCCCceEE---eccCCCCCccceEECCCCC--eEEEEecCccccccCCCCCeEEEEECCCC
Confidence            3456789999998765333   3446888889999999999  77776554          48999999765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.37  E-value=3e-06  Score=45.30  Aligned_cols=53  Identities=13%  Similarity=0.088  Sum_probs=42.2

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~~   64 (65)
                      ..|.+||+.++...    .+..+...+..++|+|+++  .++++..++  .|.+||+.+++
T Consensus       175 ~~i~~~d~~~g~~~----~l~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR----VFDSGEGSFSSASISPGMK--VTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             EEEEEEETTTCCCE----EECCSSCEEEEEEECTTSC--EEEEEECSSCEEEEEECTTTCC
T ss_pred             eEEEEEcCCCCCce----EeecCCCccccceECCCCC--EEEEccCCCeeEEEEEcCCCCc
Confidence            56889998776432    3567777889999999999  788877788  89999988764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.36  E-value=2.3e-06  Score=46.56  Aligned_cols=57  Identities=9%  Similarity=0.039  Sum_probs=42.3

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccc---cEeEEEecCCCCcEEEEEecCC---------CcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLYVITCGDD---------KTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~~---------~~i~~w~~~~~~   64 (65)
                      +.|+.|++||..++....   .+..|..   .+..++|+|++.  .+++++.+         +.+.+||+.+++
T Consensus        34 ~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  102 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecceeeEEEEECCCCc
Confidence            457899999998765332   3444543   488999999999  78877653         788899998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.35  E-value=7e-06  Score=40.63  Aligned_cols=54  Identities=9%  Similarity=0.124  Sum_probs=40.5

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+||+.++....   .+.. ...+.+++|+|++.  .+++++.++.|.+||+.+++
T Consensus       259 ~~~v~~~d~~~~~~~~---~~~~-~~~~~~~~~s~dg~--~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          259 YNVLESFDLEKNASIK---RVPL-PHSYYSVNVSTDGS--TVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ESEEEEEETTTTEEEE---EEEC-SSCCCEEEECTTSC--EEEEESBSSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCcCcc---eecC-CCceeeEEECCCCC--EEEEEcCCCcEEEEECcCCc
Confidence            4678999987764332   2322 24568899999999  77778889999999998764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.31  E-value=8.8e-06  Score=40.38  Aligned_cols=56  Identities=9%  Similarity=0.131  Sum_probs=40.1

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC-CcEEEEECC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD-KTIKVWDAT   61 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-~~i~~w~~~   61 (65)
                      +.++.|.+|++...........+ .+...+.+++|+|++.  .+++++.+ +.+.+|++.
T Consensus        12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~--~l~~~~~~~~~v~~~~~~   68 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKR--YLYVGVRPEFRVLAYRIA   68 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSS--EEEEEETTTTEEEEEEEC
T ss_pred             CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCC--EEEEeecCCCeEEEEEec
Confidence            56889999998532222222222 3556778999999999  77777665 899999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.30  E-value=4.2e-06  Score=45.00  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             ccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEec-------CCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-------DDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-------~~~~i~~w~~~~~~   64 (65)
                      .|++|.+||..+..    ....+..+.+|...+..++++|+++  .|++..       .+.+|.+||+.+++
T Consensus       391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~--~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS--HLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC--EEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC--cEEEecCCCCCcccCceEEEEECCCCC
Confidence            36899999997621    1334457888888889999999999  888876       26799999998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.29  E-value=1.3e-06  Score=47.55  Aligned_cols=56  Identities=16%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccc---cEeEEEecCCCCcEEEEEecC---------CCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLYVITCGD---------DKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~---------~~~i~~w~~~~~~   64 (65)
                      .|+.|++||+.++....   .+..+..   .+..++|+|+++  .++.++.         ++.+.+||+.+++
T Consensus        34 ~d~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~i~~~d~~~g~  101 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTATYYIYDLSNGE  101 (719)
T ss_dssp             TTSCEEEEESSSCCEEE---EECHHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCCCEEEEEcCCCcEEE---EEccccccccceeeEEECCCCC--eEEEEecCceeEEeecceEEEEEECCCCc
Confidence            47889999998765332   3333332   378999999999  7777655         6899999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.29  E-value=1.1e-05  Score=39.98  Aligned_cols=59  Identities=10%  Similarity=-0.000  Sum_probs=41.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEee-cccc-cEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEID-AHVG-GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.|.+||..++....   .+. ++.. .+..++|+|++.. +++++..++.|.+||+.+++
T Consensus         7 ~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~~~~   67 (337)
T 1pby_B            7 PARPDKLVVIDTEKMAVDK---VITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EETTTEEEEEETTTTEEEE---EEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCC
T ss_pred             cCCCCeEEEEECCCCcEEE---EEEcCCCCCCccceEEcCCCCE-EEEEeCCCCeEEEEECCCCC
Confidence            4568899999998765333   232 2211 4688999999973 45566678899999998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.29  E-value=7.8e-06  Score=41.03  Aligned_cols=59  Identities=10%  Similarity=0.250  Sum_probs=39.8

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEE--ECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVW--DATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w--~~~~~~   64 (65)
                      .++.|.+|++...........+..+...+..++|+|++.  .+++++ .++.+.+|  |..+|+
T Consensus       260 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          260 GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA--FVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS--EEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC--EEEEEEcCCCcEEEEEEeCCCCe
Confidence            357889999863222333334555555678999999999  676665 45899999  545553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.26  E-value=8.3e-06  Score=40.61  Aligned_cols=54  Identities=9%  Similarity=0.070  Sum_probs=39.3

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+||+.++....   .+. ....+..++|+|++.  .+++++.++.+.+||..+++
T Consensus       274 ~~~v~~~d~~~~~~~~---~~~-~~~~~~~~~~s~dg~--~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          274 LNRLAKYDLKQRKLIK---AAN-LDHTYYCVAFDKKGD--KLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             ESEEEEEETTTTEEEE---EEE-CSSCCCEEEECSSSS--CEEEESBSSEEEEEETTTTE
T ss_pred             cCeEEEEECccCeEEE---EEc-CCCCccceEECCCCC--EEEEecCCCeEEEEeccccc
Confidence            5678999998764333   232 223467899999988  66667788999999998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.19  E-value=2.4e-05  Score=40.05  Aligned_cols=50  Identities=10%  Similarity=0.191  Sum_probs=39.8

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ..|.+||+.+.+...   .+..+.  ...++|+|+++  ++++++. +.|.+||..++
T Consensus       286 ~~v~viD~~t~~~v~---~i~~~~--p~~ia~spdg~--~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVA---RIPGRD--ALSMTIDQQRN--LMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             SEEEEEETTTTEEEE---EEECTT--CCEEEEETTTT--EEEEECS-SCEEEEECSSS
T ss_pred             ceEEEEECCCCcEEE---EEecCC--eeEEEECCCCC--EEEEeCC-CeEEEEECCCC
Confidence            478899998765433   455555  78999999999  7887776 99999999887

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.12  E-value=4.1e-05  Score=38.13  Aligned_cols=59  Identities=7%  Similarity=-0.070  Sum_probs=40.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeeccc-ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.|.+||..++....   .+..+. .....++|+|++.. .+++...++.|.+||+.+++
T Consensus        17 ~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~-~~v~~~~~~~i~~~d~~t~~   76 (349)
T 1jmx_B           17 TNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCK   76 (349)
T ss_dssp             EETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTE
T ss_pred             eCCCCeEEEEECCCCcEEE---EEecCCCCCCceeEECCCCCE-EEEEeCCCCcEEEEeCCCCc
Confidence            3457899999998765333   333222 24678999999983 34555678999999998763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.09  E-value=3.1e-05  Score=38.67  Aligned_cols=55  Identities=11%  Similarity=0.077  Sum_probs=41.6

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+||..++....   .+..+...+..++|+|++.  .++.++.++.+.+||..+++
T Consensus       163 ~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~  217 (353)
T 3vgz_A          163 ESVIWVVDGGNIKLKT---AIQNTGKMSTGLALDSEGK--RLYTTNADGELITIDTADNK  217 (353)
T ss_dssp             SCEEEEEETTTTEEEE---EECCCCTTCCCCEEETTTT--EEEEECTTSEEEEEETTTTE
T ss_pred             CceEEEEcCCCCceEE---EecCCCCccceEEECCCCC--EEEEEcCCCeEEEEECCCCe
Confidence            6779999988764332   3433444568899999999  78888889999999988763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.06  E-value=5.2e-05  Score=37.61  Aligned_cols=54  Identities=15%  Similarity=0.366  Sum_probs=36.6

Q ss_pred             ccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEEC
Q 039404            4 SRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDA   60 (65)
Q Consensus         4 ~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~   60 (65)
                      .++.|.+|++.. .........+..+.. +..++|+|++.  .+++++ .++.+.+|++
T Consensus       251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~--~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          251 TASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK--YLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             TTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS--EEEEECTTTCEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC--EEEEecCCCCeEEEEEE
Confidence            467899999873 112333333444433 78899999998  666665 6899999944

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.05  E-value=1.5e-05  Score=43.41  Aligned_cols=52  Identities=6%  Similarity=-0.032  Sum_probs=39.9

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .++.+.+||+.++...    .+..+...+..++|+|++.  .++.+ .++.|.+|++.+
T Consensus        99 ~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           99 TQGGLVGFDMLARKVT----YLFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             ETTEEEEEETTTTEEE----EEECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBC
T ss_pred             ECCEEEEEECCCCceE----EccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCc
Confidence            4578999999876422    2444566788899999999  77774 679999999977

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.03  E-value=2.7e-05  Score=39.06  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=39.6

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDAT   61 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~   61 (65)
                      ++.|.+|++.++. ......+..+...+..++|+|++.  .+++++ .++.+.+|++.
T Consensus        62 ~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           62 EGGIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             EEEEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEEEEC
T ss_pred             CceEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEEEeC
Confidence            5789999986543 333334444566778999999999  677766 77899999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.99  E-value=0.00017  Score=35.98  Aligned_cols=60  Identities=10%  Similarity=0.032  Sum_probs=40.1

Q ss_pred             cccCeEEEEECCCCceEeeeEE-eecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLE-IDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~~~~   64 (65)
                      ..++.+.+||..++........ ..++...+..++|+|++.  .++.+ ..++.+.+||..+++
T Consensus       203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--RAFITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--EEEEEESSSSEEEEEETTTCC
T ss_pred             cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--EEEEEeCCCCEEEEEECCCCc
Confidence            3467889999987653332111 112445577899999998  55554 456999999998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.99  E-value=9.4e-05  Score=42.32  Aligned_cols=53  Identities=19%  Similarity=0.310  Sum_probs=41.2

Q ss_pred             CeEE-EEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQ-IYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~-i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..+. +|+...+...    .+.+|...+..++|+|++.  .+++++.++.+++||+.+++
T Consensus       358 ~~l~~~~d~~~~~~~----~l~~~~~~~~~~~~SpDG~--~la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          358 GDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             EEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             CceEEEEECCCCCce----EecCCccceeeeEECCCCC--EEEEECCCCeEEEEECCCCc
Confidence            4566 7787665422    2336777889999999999  89999999999999998764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.96  E-value=5.8e-05  Score=41.34  Aligned_cols=29  Identities=10%  Similarity=0.140  Sum_probs=24.9

Q ss_pred             EeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +..++|+|+++  .+++++. +.|.+||+.++
T Consensus       111 v~~~~~SpDg~--~l~~~~~-~~i~~~d~~~~  139 (741)
T 2ecf_A          111 IVDYQWSPDAQ--RLLFPLG-GELYLYDLKQE  139 (741)
T ss_dssp             SCCCEECTTSS--EEEEEET-TEEEEEESSSC
T ss_pred             cceeEECCCCC--EEEEEeC-CcEEEEECCCC
Confidence            67899999999  7777665 89999999876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.95  E-value=8.1e-05  Score=37.00  Aligned_cols=56  Identities=5%  Similarity=0.085  Sum_probs=38.7

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC-C--cEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD-K--TIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-~--~i~~w~~~~~~   64 (65)
                      ++.|.+||..++...  ...+..+..+..+++|+|++.  .+++...+ +  .+.+||+.+++
T Consensus        61 ~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~  119 (331)
T 3u4y_A           61 CQTLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNK  119 (331)
T ss_dssp             TCEEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTE
T ss_pred             CCeEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCC
Confidence            568999999876531  223444555544599999999  77765544 3  89999998763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.95  E-value=8.1e-05  Score=40.80  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=39.6

Q ss_pred             CeEEEEECCCC---ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            6 HIVQIYPCNGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +.|.+||+.++   .. .   .+..+...+..++|+|+++  .++.++ ++.|.+||+.++
T Consensus       129 ~~i~~~d~~~~~~~~~-~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAV-R---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             TEEEEEESSSCSTTSC-C---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTT
T ss_pred             CcEEEEECCCCCcceE-E---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCC
Confidence            67889998765   32 2   3556677899999999999  777765 568999999765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.94  E-value=2.8e-05  Score=37.61  Aligned_cols=55  Identities=20%  Similarity=0.147  Sum_probs=37.6

Q ss_pred             cCeEEEEECC-CCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC-----------CcEEEEECCCCC
Q 039404            5 RHIVQIYPCN-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD-----------KTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-----------~~i~~w~~~~~~   64 (65)
                      ++.+.+|++. .+...   ..+..+...+..++|+|++.  .++.++.+           ..+.+||+.+++
T Consensus       194 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          194 TGQMQIWRVRVDGSSV---ERITDSAYGDWFPHPSPSGD--KVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             TSSCEEEEEETTSSCE---EECCCCSEEEEEEEECTTSS--EEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             CCCccEEEECCCCCCc---EEEecCCcccCCeEECCCCC--EEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence            5667777764 22222   24555667788999999999  77666554           569999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.90  E-value=1.8e-05  Score=43.18  Aligned_cols=56  Identities=7%  Similarity=-0.027  Sum_probs=39.1

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+.+||+.++.. ..+....++...+..++|+|+++  .++.++. +.|.+|+..+++
T Consensus        90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~  145 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQ  145 (723)
T ss_dssp             CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSC
T ss_pred             eeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCc
Confidence            47889999987643 21112233444578899999999  6777654 789999987764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.84  E-value=0.00013  Score=39.79  Aligned_cols=56  Identities=16%  Similarity=0.255  Sum_probs=40.0

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC-----cEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK-----TIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~-----~i~~w~~~~~   63 (65)
                      +..|.+||+.++.... +.....+...+..++|+|++.  .+++++.+.     .+.+||..++
T Consensus       234 ~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVY-LQTGEPKEKFLTNLSWSPDEN--ILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEEEEEEETTTTEEEE-CCCCSCTTCEEEEEEECTTSS--EEEEEEECTTSCEEEEEEEETTTC
T ss_pred             eeEEEEEECCCCceEe-eccCCCCceeEeeEEEECCCC--EEEEEEeCCCCCeeEEEEEECCCC
Confidence            3578899998764222 111124566789999999999  777766664     8999999876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.82  E-value=7.4e-05  Score=41.32  Aligned_cols=52  Identities=13%  Similarity=-0.001  Sum_probs=39.3

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.+.+||+.++...    .+..+...+...+|+|+++  .|+.+ .++.|.+|+..+++
T Consensus        92 ~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           92 ASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSC
T ss_pred             eEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCc
Confidence            56779999876422    3555667889999999999  66665 47899999987653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.82  E-value=0.00042  Score=35.00  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             cCeEEEEECC--CCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEE--CCCC
Q 039404            5 RHIVQIYPCN--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWD--ATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~--~~~~   63 (65)
                      ++.|.+|++.  ++. ......+.. ...+..++|+|++.  ++++++ .++.+.+|.  ..+|
T Consensus       281 ~~~i~v~~~~~~~g~-~~~~~~~~~-g~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          281 ADGVAIFKVDETNGT-LTKVGYQLT-GIHPRNFIITPNGK--YLLVACRDTNVIQIFERDQATG  340 (361)
T ss_dssp             SCEEEEEEECTTTCC-EEEEEEEEC-SSCCCEEEECTTSC--EEEEEETTTTEEEEEEECTTTC
T ss_pred             CCEEEEEEEcCCCCc-EEEeeEecC-CCCCceEEECCCCC--EEEEEECCCCCEEEEEEECCCC
Confidence            4689999985  232 332333433 44668999999999  666665 678999964  4454

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.79  E-value=8.4e-05  Score=38.94  Aligned_cols=50  Identities=8%  Similarity=0.022  Sum_probs=34.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +..||.+.+||+..+....       +...|.+++|+|.+.  .  .+..|+.+++|+...
T Consensus       142 ~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG~--~--vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          142 LNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQL--A--VLLKDRSFQSFAWRN  191 (388)
T ss_dssp             EETTSEEEEEETTTCCEEE-------EEESEEEEEECSSEE--E--EEETTSCEEEEEEET
T ss_pred             EECCCCEEEEEccCCcccc-------ccCCceEEEEcCCce--E--EEEcCCcEEEEcCCC
Confidence            4578888888887653211       234688999988763  3  455678888886654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.77  E-value=0.00021  Score=36.65  Aligned_cols=54  Identities=20%  Similarity=0.386  Sum_probs=38.6

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec----------CCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG----------DDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~~~~i~~w~~~~~~   64 (65)
                      .|+.|.+||..+++...   .+.....+  .++|+|+++  +++.++          .++.|.+||..+++
T Consensus        29 ~d~~v~v~D~~t~~~~~---~i~~g~~p--~i~~spdg~--~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLG---MVPTAFNG--HVQVSNDGK--KIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGCEEEEEETTTCCEEE---EEECCEEE--EEEECTTSS--EEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             ccCeEEEEECCCCeEEE---EecCCCCC--ceEECCCCC--EEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            36789999987765433   44444444  899999999  677664          35679999987653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.71  E-value=0.0002  Score=36.34  Aligned_cols=53  Identities=8%  Similarity=-0.067  Sum_probs=37.5

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|.+||+.++....   ...++...+....|+|++.  .|+....+..+.+||+.+++
T Consensus        61 ~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           61 NYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             EEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEETTTEEEEEETTTCC
T ss_pred             eEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeCCCeEEEEECCCCc
Confidence            47777877654222   2334444444678999999  88888888899999998764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.69  E-value=0.00082  Score=33.15  Aligned_cols=55  Identities=5%  Similarity=0.018  Sum_probs=40.3

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..++.|..|+..++  ..   .+..+...+.++++++++.  ++++...++.|..||..+++
T Consensus        47 ~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           47 VRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             GGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEECSTTCC
T ss_pred             CCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEEcCCCCc
Confidence            34567888888765  22   3445566788999999998  77777667889999986653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.66  E-value=0.00019  Score=39.31  Aligned_cols=53  Identities=15%  Similarity=0.129  Sum_probs=37.8

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+||+.++..... ..+   ...+..++|+|+++  .++.+. ++.|++|++.+++
T Consensus        89 ~~~i~~~d~~~g~~~~~-~~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~  141 (719)
T 1z68_A           89 TATYYIYDLSNGEFVRG-NEL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDP  141 (719)
T ss_dssp             EEEEEEEETTTTEECCS-SCC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSC
T ss_pred             ceEEEEEECCCCccccc-eec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCC
Confidence            57899999987643100 112   24578899999999  677764 7899999987653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.61  E-value=0.0005  Score=34.74  Aligned_cols=55  Identities=15%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             ccCeEEEEECCCCceEeeeEEe---ecccccEeEEEecCCCCcEEEEEecC--CCcEEEEECC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEI---DAHVGGVNDIAFSHPNKQLYVITCGD--DKTIKVWDAT   61 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~--~~~i~~w~~~   61 (65)
                      .++.|.+|++.++. ......+   ..+......++|+|+++  +++.+..  ++.+.+|++.
T Consensus       231 ~~~~v~v~~~~~g~-~~~~~~~~~~~~~~~~~~~i~~spdg~--~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          231 IGGTVIAFRYADGM-LDEIQTVAADTVNAQGSGDIHLSPDGK--YLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             TTCEEEEEEEETTE-EEEEEEEESCSSCCCCEEEEEECTTSS--EEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEEecCCc-eEEeEEEecCCCCCCCcccEEECCCCC--EEEEECCCCCCEEEEEEEc
Confidence            46789999987543 2222222   22334467999999999  6655544  5899999885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.59  E-value=0.0015  Score=33.31  Aligned_cols=58  Identities=9%  Similarity=0.228  Sum_probs=38.6

Q ss_pred             ccCeEEEEECCC-CceEeeeEEee-cccccEeEEEecCCCCcEEEEEec-CCCcEEEEECC-CC
Q 039404            4 SRHIVQIYPCNG-GDEVRQHLEID-AHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDAT-NG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~-~~   63 (65)
                      .++.+.+|++.. +........+. .+...+.+++|+|+++  .++++. .+..|.+|++. ++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTS
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC--EEEEEcCCCCEEEEEEECCCC
Confidence            477899999863 33222111221 2345688999999998  666654 46799999987 55

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.51  E-value=0.0013  Score=32.72  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=37.0

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeeccc-ccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ++.++.|.+||..+++...   .+..+. ..+..+.+.|++.  ++++  .+..+..+|.
T Consensus        11 ~~~~~~v~~~d~~tG~~~w---~~~~~~~~~~~~~~~~pdG~--ilvs--~~~~V~~~d~   63 (276)
T 3no2_A           11 GSGWNKIAIINKDTKEIVW---EYPLEKGWECNSVAATKAGE--ILFS--YSKGAKMITR   63 (276)
T ss_dssp             CTTCSEEEEEETTTTEEEE---EEECCTTCCCCEEEECTTSC--EEEE--CBSEEEEECT
T ss_pred             eCCCCEEEEEECCCCeEEE---EeCCCccCCCcCeEECCCCC--EEEe--CCCCEEEECC
Confidence            4678899999997776443   344443 3568889999998  7774  3666777776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.51  E-value=0.0013  Score=33.15  Aligned_cols=56  Identities=14%  Similarity=0.096  Sum_probs=40.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +..+++|+..++..........++......++++|++.  ++++...++.|..|++..
T Consensus       267 ~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~--lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          267 PVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT--VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE--EEEEESSSCCEEEEEEEE
T ss_pred             CcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC--EEEEECCCCEEEEEeCCc
Confidence            34788999877654442111134556678999999996  888888899999998753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.44  E-value=0.00023  Score=39.46  Aligned_cols=55  Identities=9%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             cCeEEEEECCCCceEeeeEEeeccccc-----EeEEEecCCCCcEEEEEecCC---------CcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGG-----VNDIAFSHPNKQLYVITCGDD---------KTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~s~~~~---------~~i~~w~~~~~~   64 (65)
                      |+.|++|++.++....   .+.+|...     ...++|+|+++  .++.++.+         +.+.+||+.+++
T Consensus        35 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~r~~~~~~~~~~d~~~~~  103 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSV---FLENSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (740)
T ss_dssp             TTEEEEEETTTCCEEE---EECTTTTTTCCSCCCEEEECTTSS--EEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCcEEEEECCCCceEE---EEechhhhhhcccccceEECCCCC--EEEEEECCeeeEEEccceEEEEEECCCCc
Confidence            7899999998875433   35555422     23478999999  77776654         566799998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.44  E-value=0.0034  Score=34.23  Aligned_cols=56  Identities=5%  Similarity=0.117  Sum_probs=36.6

Q ss_pred             CeEEEEECC-CCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCC
Q 039404            6 HIVQIYPCN-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~   63 (65)
                      ..|.+||+. ++..........++...+..+.|+|++.  +++++..++  .+..|+..++
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~--l~~~~~~~~~~~l~~~~~~~~  275 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS--LIVATDRTGWWNLHRVDPATG  275 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC--EEEEECTTSSCEEEEECTTTC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe--EEEEECCCCCeEEEEEECCCC
Confidence            468899987 4421111222334567788999999999  788888787  5555565444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.42  E-value=0.0039  Score=34.22  Aligned_cols=52  Identities=13%  Similarity=0.135  Sum_probs=39.7

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      .++.|.++|..++....   .+.. ......+.|+|++.  ++++++.++.|.+||+.
T Consensus       175 ~~~~V~viD~~t~~v~~---~i~~-g~~p~~v~~SpDGr--~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          175 DAGQIALIDGSTYEIKT---VLDT-GYAVHISRLSASGR--YLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             TTTEEEEEETTTCCEEE---EEEC-SSCEEEEEECTTSC--EEEEEETTSEEEEEETT
T ss_pred             CCCeEEEEECCCCeEEE---EEeC-CCCccceEECCCCC--EEEEEcCCCeEEEEECC
Confidence            46789999998765443   3332 23456899999999  88888889999999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.41  E-value=0.00015  Score=38.88  Aligned_cols=51  Identities=4%  Similarity=0.071  Sum_probs=38.3

Q ss_pred             ccC--eEEEEECCCCceEeeeEEeecccccEeEEE--------ecCCCCcEEEEEecCCCcEEEEEC
Q 039404            4 SRH--IVQIYPCNGGDEVRQHLEIDAHVGGVNDIA--------FSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         4 ~~~--~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      .++  .|.+||+.++...    .+.++...+..+.        |+|++.  ++++++.++.+++|++
T Consensus       214 ~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVE----DLELPSKDFSSYRPTAITWLGYLPDGR--LAVVARREGRSAVFID  274 (582)
T ss_dssp             CSSCEEEEEECTTTCCEE----ECCCSCSHHHHHCCSEEEEEEECTTSC--EEEEEEETTEEEEEET
T ss_pred             CCCeeEEEEEcCCCCcEE----EccCCCcChhhhhhccccceeEcCCCc--EEEEEEcCCcEEEEEE
Confidence            345  7889998876432    3445555555556        999996  8999999999999987

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.37  E-value=0.0029  Score=31.59  Aligned_cols=55  Identities=9%  Similarity=-0.020  Sum_probs=37.2

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC----CcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD----KTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~----~~i~~w~~~~~   63 (65)
                      .++.|.+||..++....   ....+...+.++++++++.  ++++...+    +.|..||..++
T Consensus        64 ~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           64 FEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             TTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCC
Confidence            35678888876654222   1223456789999999998  67766555    68888987665

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.35  E-value=0.00031  Score=36.17  Aligned_cols=56  Identities=7%  Similarity=0.011  Sum_probs=31.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|..||..+++....   +..  +.+.+..+..++.  .+++++.|+.+..||..+|+
T Consensus        15 gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~   70 (369)
T 2hz6_A           15 STLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNE   70 (369)
T ss_dssp             EETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----C
T ss_pred             EcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCc
Confidence            45688999999988764432   222  2333333445566  67777889999999987764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.25  E-value=0.0055  Score=32.29  Aligned_cols=53  Identities=11%  Similarity=0.100  Sum_probs=37.5

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .++.|++||+.+.....   ....+...+..+.+.  .+  -++.+..||.+.+||+.++
T Consensus       104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~--~p--~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A          104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNV--NN--TLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             ESSEEEEEESSSTTCEE---EEEECSSCEEEEEEC--SS--EEEEEETTSEEEEEETTTC
T ss_pred             cCCcEEEEEchhhhccC---ccceeecceeeEEec--CC--CEEEEECCCCEEEEEccCC
Confidence            57889999987644222   344556667776664  33  4777789999999999865

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.21  E-value=0.0027  Score=35.17  Aligned_cols=51  Identities=10%  Similarity=0.148  Sum_probs=34.5

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCc----------------EEEEECCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT----------------IKVWDATNG   63 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~----------------i~~w~~~~~   63 (65)
                      .|++||+.++.....  .+..  ..+..++|+|++.  .|+.+..+..                |.+|++.++
T Consensus       152 ~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~  218 (710)
T 2xdw_A          152 TIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD  218 (710)
T ss_dssp             EEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred             EEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence            799999987653321  1211  1256789999999  6666655544                999998765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.20  E-value=0.0054  Score=31.27  Aligned_cols=54  Identities=9%  Similarity=-0.026  Sum_probs=36.2

Q ss_pred             cCeEEEEECC-CCceEeeeEEee--cccccEeEEEecCCCCcEEEEEec-CCCcEEEEECC
Q 039404            5 RHIVQIYPCN-GGDEVRQHLEID--AHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDAT   61 (65)
Q Consensus         5 ~~~i~i~~~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~   61 (65)
                      ++.|.+|++. ++.. .....+.  .+......++|+|+++  .++.++ .++.+.+|++.
T Consensus       166 ~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~--~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          166 ANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGN--YLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCC--EEEEEECCCCeEEEEEEe
Confidence            4678999987 5432 2222232  2345678999999998  666554 57899998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.16  E-value=0.0025  Score=35.22  Aligned_cols=56  Identities=7%  Similarity=0.001  Sum_probs=36.2

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCc-------------EEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT-------------IKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~-------------i~~w~~~~~~   64 (65)
                      .+..|++||+.++..... ..+...  ....++|+|++.  .++.++.+..             |.+|++.++.
T Consensus       145 ~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          145 DEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP  213 (695)
T ss_dssp             SCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred             ceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence            346899999987653200 011111  115789999999  7777766554             9999987653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.09  E-value=0.0061  Score=29.82  Aligned_cols=50  Identities=12%  Similarity=0.261  Sum_probs=33.7

Q ss_pred             eEEEEECCCCceEeeeEEeecc--cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .|.+|+... ....   .+..+  ...+..++++|++.  ++++ +.++.|.+|++...
T Consensus       230 ~i~~~~~~g-~~~~---~~~~~~~~~~~~~i~~~~~g~--l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          230 NLTIFTQDG-QLIS---ALESKVKHAQCFDVALMDDGS--VVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEECTTS-CEEE---EEEESSCCSCEEEEEEETTTE--EEEE-ETTTEEEEEECSCC
T ss_pred             EEEEECCCC-CEEE---EEcccCCCCcceeEEECCCCc--EEEE-CCCCeEEEEEcccc
Confidence            788898643 2222   23222  23467899999887  6766 56899999998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.06  E-value=0.0031  Score=31.96  Aligned_cols=52  Identities=8%  Similarity=-0.024  Sum_probs=34.2

Q ss_pred             eEEEEECCCCceEeeeEEeeccccc-EeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|.+|++.++...    .+..+... .....|+|++.  .++..+.+..+.+|++.+++
T Consensus        61 ~l~~~d~~~~~~~----~l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           61 NYYLLNLETQQAV----QLTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             EEEEEETTTTEEE----ECCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTTCC
T ss_pred             eEEEEECCCCcEE----EeecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCCCC
Confidence            5667777665322    22222222 23378999999  78787778899999987763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.95  E-value=0.0087  Score=29.95  Aligned_cols=37  Identities=5%  Similarity=0.132  Sum_probs=23.0

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG   50 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   50 (65)
                      .|.+|++.++....    +..... +..+.|+|++.  .++..+
T Consensus        86 ~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~  122 (347)
T 2gop_A           86 EIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVG  122 (347)
T ss_dssp             EEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEE
T ss_pred             eEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEE
Confidence            46677776654222    222223 88999999998  566554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.85  E-value=0.013  Score=29.66  Aligned_cols=55  Identities=20%  Similarity=0.076  Sum_probs=38.9

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.|.++|..+.+...   .+. .......+++++++.  ++++...++.|.++|..+++
T Consensus        62 ~~~~v~viD~~t~~~~~---~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           62 NSHVIFAIDINTFKEVG---RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYE  116 (328)
T ss_dssp             GGTEEEEEETTTCCEEE---EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTE
T ss_pred             CCCEEEEEECcccEEEE---EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCe
Confidence            35789999998765433   233 234567889988875  66665578999999988753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.70  E-value=0.018  Score=29.24  Aligned_cols=52  Identities=10%  Similarity=0.081  Sum_probs=34.7

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecC------CCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGD------DKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~------~~~i~~w~~~~~   63 (65)
                      ..|.+||+.++...    .+..+...+..++|+| ++.  .++....      ...+.+++...+
T Consensus       168 ~~l~~~d~~~g~~~----~l~~~~~~~~~~~~sp~dg~--~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          168 CRLMRVDLKTGEST----VILQENQWLGHPIYRPYDDS--TVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             EEEEEEETTTCCEE----EEEEESSCEEEEEEETTEEE--EEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             ceEEEEECCCCceE----EeecCCccccccEECCCCCC--EEEEEEecCCCCCcceEEEEeCCCC
Confidence            56888998876432    2334556688999999 888  5555443      337777777654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.61  E-value=0.0037  Score=34.58  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=26.7

Q ss_pred             ccccEeEEEecCCCCcEEEE-----EecCCCcEEEEECCCCC
Q 039404           28 HVGGVNDIAFSHPNKQLYVI-----TCGDDKTIKVWDATNGV   64 (65)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~l~-----s~~~~~~i~~w~~~~~~   64 (65)
                      |...+..++|+|+++  .++     .++.+..|++||+.+++
T Consensus       119 ~~~~~~~~~~SPDG~--~la~~~~~~G~~~~~i~v~dl~tg~  158 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGK--KVAFAQKPNAADEAVLHVIDVDSGE  158 (695)
T ss_dssp             SCEEEEEEEECTTSS--EEEEEEEETTCSCCEEEEEETTTCC
T ss_pred             CCEEEEEEEECCCCC--EEEEEECCCCCceEEEEEEECCCCC
Confidence            444678899999999  666     34445789999998875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.58  E-value=0.0098  Score=33.27  Aligned_cols=54  Identities=11%  Similarity=0.057  Sum_probs=36.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..||+.+++..-.   ++.+ .+...-.+...+.  +++.++.|+.++.||.++|+
T Consensus       454 ~g~l~A~D~~tG~~~W~---~~~~-~~~~~g~~~tagg--lvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWE---VPYV-TIFNGGTLSTAGN--LVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             EEEEEEEETTTTEEEEE---EEES-SSCCCCEEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             ceeEEEEECCCCCeEeE---ccCC-CCccCccceECCC--EEEEECCCCcEEEEECCCCc
Confidence            47899999998764332   2222 1222224444666  78888999999999999886

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.55  E-value=0.00096  Score=34.39  Aligned_cols=54  Identities=11%  Similarity=0.151  Sum_probs=26.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.+..||..+++...   .+..+.    ...++|.+.  .++.++.++.+..||.++|+
T Consensus        98 g~~dg~v~a~D~~tG~~~w---~~~~~~----~~~~~p~~~--~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           98 GKKQDIWYVIDLLTGEKQQ---TLSSAF----ADSLSPSTS--LLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             CEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             EeCCCEEEEEECCCCcEEE---EecCCC----cccccccCC--EEEEEecCCEEEEEECCCCC
Confidence            4567888999988765332   222221    134456666  78888889999999998875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.53  E-value=0.021  Score=28.60  Aligned_cols=49  Identities=16%  Similarity=0.011  Sum_probs=31.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC---C--cEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD---K--TIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~---~--~i~~w~~~~~   63 (65)
                      +..|.+|++.++...    .+    ..+..++|+|++.  .++..+.+   +  .|.+|++.++
T Consensus        42 ~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~--~la~~~~~~~~~~~~l~~~~~~~g   95 (347)
T 2gop_A           42 ENTIVIENLKNNARR----FI----ENATMPRISPDGK--KIAFMRANEEKKVSEIWVADLETL   95 (347)
T ss_dssp             EEEEEEEETTTCCEE----EE----ESCEEEEECTTSS--EEEEEEEETTTTEEEEEEEETTTT
T ss_pred             cceEEEEeCCCCceE----Ec----ccCCCeEECCCCC--EEEEEEeccCCCcceEEEEECCCC
Confidence            456778888765422    22    3467899999999  66655432   3  4777787765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.50  E-value=0.01  Score=32.43  Aligned_cols=33  Identities=6%  Similarity=-0.108  Sum_probs=26.4

Q ss_pred             ccccEeEEEecCCCCcEEEEEecCC----------CcEEEEECCC
Q 039404           28 HVGGVNDIAFSHPNKQLYVITCGDD----------KTIKVWDATN   62 (65)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~l~s~~~~----------~~i~~w~~~~   62 (65)
                      |...+..++|+|+++  .|+.++.+          ..|.+|++.+
T Consensus       128 ~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A          128 GGLRWADPVLLPERG--EVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             TCEEEEEEEEETTTT--EEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             CCccccCcEECCCCC--EEEEEEecccCCCCCCceeEEEEEECCC
Confidence            456678999999999  77776655          5899999876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.43  E-value=0.029  Score=28.30  Aligned_cols=52  Identities=8%  Similarity=0.032  Sum_probs=37.9

Q ss_pred             CeEEEEECCCCceEeeeEEee-cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      +.|.+||..++....   .+. ++......+++++++.  ++++...++.|..|+...
T Consensus        69 ~~i~~~d~~~g~~~~---~~~~~~~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g  121 (329)
T 3fvz_A           69 DTILVIDPNNAEILQ---SSGKNLFYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHS  121 (329)
T ss_dssp             CCEEEECTTTCCEEE---EECTTTCSSEEEEEECTTSC--EEEEETTTTEEEEECTTC
T ss_pred             CcEEEEECCCCeEEe---ccCCCccCCceEEEECCCCC--EEEEECCCCEEEEEeCCC
Confidence            468889987665332   222 3334678999999998  888888889999998754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.38  E-value=0.023  Score=28.38  Aligned_cols=39  Identities=10%  Similarity=0.041  Sum_probs=30.3

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+..+.....+++|++++.  +++++..++.|..||..+++
T Consensus        39 ~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred             EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence            3445556678999999988  78787888999999987653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.31  E-value=0.029  Score=27.09  Aligned_cols=54  Identities=4%  Similarity=-0.095  Sum_probs=36.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|.+|+........   ....+...+.++++++++.  ++++...++.|.+++....
T Consensus       212 ~~~v~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          212 TNQVVKLLAGSTTSTV---LPFTGLNTPLAVAVDSDRT--VYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TSCEEEECTTCSCCEE---CCCCSCSCEEEEEECTTCC--EEEEEGGGTEEEEECCCGG
T ss_pred             CCcEEEEcCCCCccee---eccCCCCCceeEEECCCCC--EEEEECCCCEEEEEcCCCc
Confidence            4567777765432111   1112234578999999998  8888888999999988654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.29  E-value=0.04  Score=28.63  Aligned_cols=54  Identities=15%  Similarity=0.169  Sum_probs=37.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~~   64 (65)
                      +.|.++|..+.+...   .+.. .....++.|+|+++. .++++. .++.|.++|..+++
T Consensus       298 ~~V~VID~~t~~vv~---~i~~-g~~p~~i~~s~Dg~~-~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          298 KEVTSVTGLVGQTSS---QISL-GHDVDAISVAQDGGP-DLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CeEEEEECCCCEEEE---EEEC-CCCcCeEEECCCCCe-EEEEEcCCCCeEEEEECCCCC
Confidence            467788887654333   3322 224689999999984 455554 58999999998764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.24  E-value=0.026  Score=29.53  Aligned_cols=51  Identities=8%  Similarity=-0.048  Sum_probs=35.6

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec----------CCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG----------DDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~~~~i~~w~~~~~~   64 (65)
                      .+.++|..+.+...   .+..-..+  .+.++|++.  .++.+.          .++.|.++|..+++
T Consensus        47 ~vsvID~~t~~v~~---~i~vG~~P--~i~~spDg~--~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           47 ENWVSCAGCGVTLG---HSLGAFLS--LAVAGHSGS--DFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             EEEEEETTTTEEEE---EEEECTTC--EEEECTTSS--CEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             eEEEEECCCCeEEE---EEeCCCCC--ceEECCCCC--EEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            67788988765443   34333344  799999999  555543          46889999998764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.09  E-value=0.056  Score=28.31  Aligned_cols=53  Identities=9%  Similarity=0.098  Sum_probs=36.5

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~~   64 (65)
                      .+.++|..+.+...   .+... ....++.|+|++.. .+++.. .++.|.++|..+++
T Consensus       295 ~~~ViD~~t~~vv~---~i~vg-~~p~gi~~s~Dg~~-l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          295 NTSSVTASVGQTSG---PISNG-HDSDAIIAAQDGAS-DNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEEEESSSCCEEE---CCEEE-EEECEEEECCSSSC-EEEEEETTTTEEEEEESSSCE
T ss_pred             CEEEEECCCCeEEE---EEECC-CCcceEEECCCCCE-EEEEccCCCCeEEEEECCCCc
Confidence            34588988765433   22222 14688999999874 566666 58999999998764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.94  E-value=0.047  Score=28.89  Aligned_cols=53  Identities=9%  Similarity=0.133  Sum_probs=36.0

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec----------CCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG----------DDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~~~~i~~w~~~~~~   64 (65)
                      ++.|.++|..+.....   .+..-..+  .+.++|+++  .++.+.          .++.|.+||..+.+
T Consensus        58 ~~~V~ViD~~t~~v~~---~I~vG~~P--~va~spDG~--~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIG---MIDGGFLP--NPVVADDGS--FIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             SEEEEEEETTTTEEEE---EEEECSSC--EEEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCEEEEEECCCCeEEE---EEECCCCC--cEEECCCCC--EEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            4678899988765443   34333334  499999999  555543          35789999988764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.92  E-value=0.087  Score=29.11  Aligned_cols=57  Identities=18%  Similarity=0.047  Sum_probs=37.4

Q ss_pred             ccccCeEEEEECC--CCceEeeeEEeecccccEeEEEec----CCCCcEEEEE-ecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCN--GGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLYVIT-CGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~--~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s-~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.|.+||+.  +.....   .+... .....++|+    |+++  +++. ...++.+.++|..+.+
T Consensus       214 ~~~dg~V~viD~~~~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk--~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          214 IGRDGKVNMIDLWMKEPTTVA---EIKIG-SEARSIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             EETTSEEEEEETTSSSCCEEE---EEECC-SEEEEEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCC
T ss_pred             EcCCCeEEEEECCCCCCcEeE---EEecC-CCCceeEEccccCCCCC--EEEEEEccCCeEEEEECCCCc
Confidence            3457889999985  433222   34332 234789999    6998  5554 5567899999976643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.68  E-value=0.056  Score=30.31  Aligned_cols=53  Identities=13%  Similarity=0.164  Sum_probs=35.9

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.|..||+.+++..-.   .+ +..+.....+...+.  .++.++.++.++.||.++|+
T Consensus       457 g~l~A~D~~tG~~~W~---~~-~~~~~~~g~~~~~g~--~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWS---VE-HVSPWNGGTLTTAGN--VVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EEEEEEETTTTEEEEE---EE-ESSSCCCCEEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             cEEEEEeCCCCcEEee---cC-CCCCCcCcceEeCCC--EEEEECCCCcEEEEECCCCc
Confidence            6788999988764332   21 122233334455666  77778899999999999885

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.68  E-value=0.089  Score=27.38  Aligned_cols=50  Identities=8%  Similarity=0.090  Sum_probs=34.1

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec----------CCCcEEEEECCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG----------DDKTIKVWDATNG   63 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~~~~i~~w~~~~~   63 (65)
                      .|.++|..+++...   .+.....+  .+.++|+++  .++.+.          .++.|.++|..+.
T Consensus        48 ~v~v~D~~t~~~~~---~i~~g~~p--~i~~spDg~--~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           48 QQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             EEEEEECCCCeEEE---EecCCCCC--CeEECCCCC--EEEEEeccccccccCCCCCeEEEEECCCC
Confidence            67889987765332   34332233  899999999  666654          3678999998764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.53  E-value=0.085  Score=26.23  Aligned_cols=54  Identities=17%  Similarity=0.259  Sum_probs=36.1

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.|..||.. ++...   .+... .....+...+.+.  .++++..++.+..+|..+|+
T Consensus       144 ~~~~v~~~d~~-G~~~w---~~~~~-~~~~~~~~~~~g~--~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          144 ATSEVREIAPN-GQLLN---SVKLS-GTPFSSAFLDNGD--CLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             TTTEEEEECTT-SCEEE---EEECS-SCCCEEEECTTSC--EEEECBTTSEEEEECTTTCC
T ss_pred             CCCEEEEECCC-CCEEE---EEECC-CCccceeEcCCCC--EEEEeCCCCeEEEEeCcCCc
Confidence            45678888876 54333   23322 2345667778888  78887778889999888764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.53  E-value=0.08  Score=25.87  Aligned_cols=52  Identities=12%  Similarity=0.286  Sum_probs=35.2

Q ss_pred             ccCeEEEEECCCCceEeeeEEeec--ccccEeEEEecCCCCcEEEEEecCCC-cEEEEECC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLYVITCGDDK-TIKVWDAT   61 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~~~-~i~~w~~~   61 (65)
                      .++.|.+|+.... ...   .+..  +......+++++++.  ++++...++ .|.+|+..
T Consensus       183 ~~~~i~~~~~~g~-~~~---~~~~~g~~~~p~~i~~d~~G~--l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          183 RAHCVKVFNYEGQ-YLR---QIGGEGITNYPIGVGINSNGE--ILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             GGTEEEEEETTCC-EEE---EESCTTTSCSEEEEEECTTCC--EEEEECSSSCEEEEECTT
T ss_pred             CCCEEEEEcCCCC-EEE---EEccCCccCCCcEEEECCCCC--EEEEeCCCCEEEEEECCC
Confidence            3567888887532 222   2322  235678999999988  777776665 99999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.47  E-value=0.082  Score=28.32  Aligned_cols=52  Identities=8%  Similarity=0.046  Sum_probs=36.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec----------CCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG----------DDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~~~~i~~w~~~~~~   64 (65)
                      +.|.++|..+.+...   .+..-..+  .+.++|+++  .++.+.          .++.|.++|..+++
T Consensus        99 ~~VsVID~~t~~vv~---~I~vG~~P--gia~SpDgk--~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           99 TQQFVIDGSTGRILG---MTDGGFLP--HPVAAEDGS--FFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             EEEEEEETTTTEEEE---EEEECSSC--EEEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CeEEEEECCCCEEEE---EEECCCCC--ceEECCCCC--EEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            688899998765443   33323334  899999999  555543          36689999987754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.38  E-value=0.11  Score=26.38  Aligned_cols=53  Identities=8%  Similarity=0.049  Sum_probs=33.6

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecCC------CcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDD------KTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~------~~i~~w~~~~~   63 (65)
                      +..|.+||+.++....    +..+...+..+.|+| ++.  .++..+.+      ..|.+|++..+
T Consensus       167 ~~~l~~~d~~~g~~~~----~~~~~~~~~~~~~sp~dg~--~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          167 TCRLIKVDIETGELEV----IHQDTAWLGHPIYRPFDDS--TVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             CEEEEEEETTTCCEEE----EEEESSCEEEEEEETTEEE--EEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             cceEEEEECCCCcEEe----eccCCcccccceECCCCCC--EEEEEecCCCCCCCceEEEEECCCC
Confidence            4578889987764322    223556678899999 676  44443322      46778887654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.37  E-value=0.079  Score=29.74  Aligned_cols=51  Identities=10%  Similarity=0.088  Sum_probs=31.2

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--------------cEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--------------TIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--------------~i~~w~~~~~   63 (65)
                      ..|++||+.++.....  ..  +...+..++|+|+ .  .++.+..+.              .|.+|++.++
T Consensus       189 ~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~  253 (741)
T 1yr2_A          189 RTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTP  253 (741)
T ss_dssp             EEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-S--EEEEEECCCC--------CCCCCEEEEEETTSC
T ss_pred             EEEEEEECCCCCCCCc--cC--CCceeccEEEECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCC
Confidence            4688999987754321  11  1111247899999 7  555554443              3888888654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.05  E-value=0.13  Score=25.36  Aligned_cols=54  Identities=11%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++.|.+|+..++....   .+..+...+.++++++++.. ++++...++.|..+++..
T Consensus       246 ~~~i~~~d~~~g~~~~---~~~~~~~~~~~i~~~~dg~~-l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKT-IFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSE-EEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEcCCCCcEeE---EEeCCCCCceeEEECCCCCE-EEEEeCCCCeEEEEeCCC
Confidence            4567788876433222   23344466889999998873 334445567888888754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.84  E-value=0.21  Score=26.83  Aligned_cols=54  Identities=17%  Similarity=0.393  Sum_probs=36.9

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~~   64 (65)
                      +.|.+.|..+.+...   .+... .....+.|+|+++. .+++.. .++.|.++|..+++
T Consensus       350 ~~VsVID~~T~kvv~---~I~vg-~~P~gia~spDg~~-~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          350 RFVVVLNAETGERIN---KIELG-HEIDSINVSQDAEP-LLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEEEEETTTCCEEE---EEEEE-EEECEEEECCSSSC-EEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEECCCCeEEE---EEECC-CCcCeEEEccCCCE-EEEEEcCCCCeEEEEECCCCC
Confidence            468888888765444   22211 23578999999873 444444 68999999998764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.73  E-value=0.097  Score=30.69  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=26.1

Q ss_pred             cEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           31 GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .+.++...++..  ++++-+.|+.+++|++.+++
T Consensus       237 ~~~~~~~~~~~~--~lftl~~D~~LRiWsl~t~~  268 (950)
T 4gq2_M          237 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQ  268 (950)
T ss_dssp             CEEEEEEETTTT--EEEEEETTCEEEEEETTTTE
T ss_pred             eEEEEeecCCCc--EEEEEECCCEEEEEECCCCC
Confidence            356666667777  89999999999999998874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.61  E-value=0.17  Score=24.87  Aligned_cols=32  Identities=22%  Similarity=0.514  Sum_probs=25.4

Q ss_pred             ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .....+++++++.  ++++...++.|..|+..++
T Consensus       226 ~~p~~i~~d~~G~--l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          226 GGADGMDFDEDNN--LLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             CEEEEEEEBTTCC--EEEEEETTTEEEEECTTCB
T ss_pred             CCCCceEECCCCC--EEEEEcCCCEEEEEcCCCC
Confidence            4567899999988  7777667888999998754

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=94.59  E-value=0.3  Score=27.54  Aligned_cols=56  Identities=14%  Similarity=0.135  Sum_probs=33.5

Q ss_pred             CeEEEEECCCCceE-eeeEEeecccccEeEEEecCCCCcEEEEEecC-----CCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD-----DKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----~~~i~~w~~~~~   63 (65)
                      ..|.+|++.++... ..+.....+...+..+.|+|+++  .++..+.     ...+.+||+.++
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEEEEETT
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEEECCCC
Confidence            35778888654321 11111222333578899999998  5555443     348888888654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=94.55  E-value=0.047  Score=30.47  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=25.1

Q ss_pred             ccccEeEEEecCCCCcEEEEE-----ecCCCcEEEEECCCCC
Q 039404           28 HVGGVNDIAFSHPNKQLYVIT-----CGDDKTIKVWDATNGV   64 (65)
Q Consensus        28 ~~~~v~~~~~~~~~~~~~l~s-----~~~~~~i~~w~~~~~~   64 (65)
                      +...+..++|+|+++  .++-     ++....|+++|+.+|+
T Consensus       127 ~~~~l~~~~~SpDg~--~lAy~~~~~G~~~~~i~v~dl~tg~  166 (693)
T 3iuj_A          127 GTTALDQLSFSRDGR--ILAYSLSLAGSDWREIHLMDVESKQ  166 (693)
T ss_dssp             SCCEEEEEEECTTSS--EEEEEEECSSCCEEEEEEEETTTCS
T ss_pred             CcEEEEEEEECCCCC--EEEEEEecCCCceEEEEEEECCCCC
Confidence            334577889999999  5552     2333689999998875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.53  E-value=0.19  Score=28.26  Aligned_cols=54  Identities=9%  Similarity=0.053  Sum_probs=34.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..||..+++..-.   .+.. .......+...+.  +++.++.++.++.||.++|+
T Consensus       437 ~g~l~A~D~~tG~~~W~---~~~~-~~~~~~~~~t~gg--~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWK---VPYP-THWNGGTLSTAGN--LVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTTTEEEEE---EEES-SSCCCCEEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCCCcEEEE---ccCC-CCCcCceeEeCCC--EEEEECCcccchhhhhhcCh
Confidence            47889999988764332   1111 1222222333566  78888899999999998875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=94.11  E-value=0.32  Score=25.87  Aligned_cols=54  Identities=20%  Similarity=0.364  Sum_probs=37.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEE-ecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVIT-CGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~~i~~w~~~~~~   64 (65)
                      ..|-++|..+.+...   .+.. ...+..+.++++++. .|++ ...++.|.++|..+++
T Consensus       311 ~~V~viD~~t~kv~~---~i~v-g~~~~~lavs~D~~~-~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          311 RFVVVLDAKTGERLA---KFEM-GHEIDSINVSQDEKP-LLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEEEEETTTCCEEE---EEEE-EEEECEEEECSSSSC-EEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEECCCCeEEE---EEEC-CCCcceEEECCCCCe-EEEEEcCCCCeEEEEECCCCc
Confidence            457788888766443   2221 125678999999863 4444 5568999999998764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=93.95  E-value=0.42  Score=26.75  Aligned_cols=53  Identities=15%  Similarity=0.078  Sum_probs=33.3

Q ss_pred             EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe---cCCCcEEEEECCCCC
Q 039404            8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC---GDDKTIKVWDATNGV   64 (65)
Q Consensus         8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~~~~i~~w~~~~~~   64 (65)
                      |.+|++.++....   .+..+.+.+..++++|++.. ++++.   ...+.+..||+.+++
T Consensus       361 l~~~~~~~g~~~~---~l~~~~~~v~~~~~s~d~~~-l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLK---IFPLEVGSVVGYSGQKKDTE-IFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEE---EECCCSSEEEEEECCTTCSE-EEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEE---ecCCCCceEEEEecCCCCCE-EEEEEeCCCCCCEEEEEECCCCc
Confidence            5566764443222   34445667788999998873 33332   245789999987764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=93.83  E-value=0.27  Score=24.17  Aligned_cols=34  Identities=12%  Similarity=0.089  Sum_probs=26.8

Q ss_pred             ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404           26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus        26 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ..+......++|+|++.  .+++...++.|..|++.
T Consensus       168 ~~~~~~~~gi~~s~dg~--~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSGN--LLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             ECCCSSEEEEEECTTSC--EEEEETTTTEEEEEEEC
T ss_pred             ecCCCCCccEEECCCCC--EEEEeCCCCeEEEEEEC
Confidence            34445668899999999  66777778899999885

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=93.74  E-value=0.29  Score=27.42  Aligned_cols=51  Identities=6%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC-------------CcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD-------------KTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-------------~~i~~w~~~~~   63 (65)
                      ..|+++|+.++.....  .+...  ....++|+ +++  .|+.+..+             ..|.+|++.++
T Consensus       155 ~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~--~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~  218 (693)
T 3iuj_A          155 REIHLMDVESKQPLET--PLKDV--KFSGISWL-GNE--GFFYSSYDKPDGSELSARTDQHKVYFHRLGTA  218 (693)
T ss_dssp             EEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTT--EEEEEESSCCC-------CCCCEEEEEETTSC
T ss_pred             EEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCC--EEEEEEecCcccccccccCCCcEEEEEECCCC
Confidence            5688999988753321  12111  12467899 988  55555544             34888888654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=93.65  E-value=0.28  Score=23.62  Aligned_cols=54  Identities=11%  Similarity=0.006  Sum_probs=35.1

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|.+|+........   ....+.....++++++++.  ++++...++.|..|+....
T Consensus       170 ~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~d~~g~--l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVV---LPFTDITAPWGIAVDEAGT--VYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             GTEEEEECTTTCCEEE---CCCSSCCSEEEEEECTTCC--EEEEETTTSCEEEECTTCS
T ss_pred             CCEEEEEecCCCceEe---ecccCCCCceEEEECCCCC--EEEEECCCCcEEEEcCCCC
Confidence            4567777766543211   1112224578899999887  7777777888999987543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=93.26  E-value=0.4  Score=24.26  Aligned_cols=52  Identities=2%  Similarity=-0.121  Sum_probs=34.8

Q ss_pred             CeEEEEECCCCceEeeeEEeecc-cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.|.++|..+.....   .+... ......++++|++.  .++.+..  .+..+|..+++
T Consensus       203 ~~v~~id~~t~~v~~---~~~~~~g~~p~~la~~~d~~--~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          203 PSLYRIDAETFTVEK---QFKFKLGDWPSEVQLNGTRD--TLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             CEEEEEETTTTEEEE---EEECCTTCCCEEEEECTTSC--EEEEESS--SEEEEETTCSS
T ss_pred             ceEEEEECCCCeEEE---EEecCCCCCceeEEEecCCC--EEEEEcc--EEEEEECCCCc
Confidence            678889987654322   22211 23568999999988  6666544  88899987654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=93.11  E-value=0.39  Score=23.82  Aligned_cols=58  Identities=10%  Similarity=0.183  Sum_probs=36.0

Q ss_pred             cCeEEEEECC--CCceEe--eeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCN--GGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~--~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+|++.  ++....  ....+.........+++.+++.  ++++...++.|..||..+|+
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~--lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK--LWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC--EEEEEETTTEEEEECTTTCC
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC--EEEEEcCCCEEEEEcCCCce
Confidence            4567777763  332111  1112222334567899999988  77776677889999987654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.03  E-value=0.12  Score=30.74  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             eEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           33 NDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        33 ~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++...++..  ++++-+.|+.+++|++.++.
T Consensus       241 vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~  270 (1139)
T 4fhn_B          241 ISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQ  270 (1139)
T ss_dssp             SCCEEETTTT--EEEEEBTTCEEEEEETTTTE
T ss_pred             EEeeccCCcc--EEEEEeCCCEEEEEECCCCC
Confidence            4445555667  89999999999999998874

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.36  E-value=0.45  Score=26.43  Aligned_cols=54  Identities=20%  Similarity=0.181  Sum_probs=32.5

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.-||+.+++..-.. ..  . .+...-.....+.  +++.++.|+.++.+|.++|+
T Consensus       465 ~G~l~A~D~~tG~~~W~~-~~--~-~~~~~g~~~tagg--lvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEH-KE--H-LPLWAGVLATAGN--LVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEE-EE--S-SCCCSCCEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCCCCEEEEe-cC--C-CCCcccceEeCCC--EEEEECCCCcEEEEECCCCC
Confidence            567888898877643311 11  1 1111111111355  67778899999999999885

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.17  E-value=0.52  Score=26.10  Aligned_cols=54  Identities=11%  Similarity=-0.021  Sum_probs=32.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..+|..+++..-.   +.. ...+....+...+.  .++.++.|+.+..+|.++|+
T Consensus       443 ~g~l~a~D~~tG~~~W~---~~~-~~~~~~~~~~t~gg--~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWT---KWE-KFAAWGGTLYTKGG--LVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTTCCEEEE---EEE-SSCCCSBCEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCCEEEE---ecC-CCCccceeEEECCC--EEEEEcCCCeEEEEECCCCC
Confidence            46788889887764331   111 11112211222345  66778889999999998875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=91.82  E-value=0.63  Score=23.14  Aligned_cols=50  Identities=18%  Similarity=0.066  Sum_probs=31.7

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|..|+.. +. ..   .+......+..+.+++++.  ++++...++.|..|+..
T Consensus        66 ~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           66 GRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             TTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred             CCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence            4556667653 22 11   2333445678999999988  67665556778888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=91.01  E-value=0.99  Score=23.82  Aligned_cols=33  Identities=9%  Similarity=0.317  Sum_probs=23.2

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .....+++++|++.  .++.+..++.|..|+..++
T Consensus       218 ~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          218 SGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             CSCCCBCEECTTSS--EEEEECTTCEEEEEETTTC
T ss_pred             cCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCC
Confidence            34567889999555  3444666788999988654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=90.89  E-value=0.73  Score=26.75  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=22.6

Q ss_pred             EeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      |.++.+  +..  ++++-+.|+.+++|++.++.
T Consensus       224 Is~~~~--~~~--fLftL~~Dh~LRiWsL~t~~  252 (729)
T 3f7f_A          224 ISCKLF--HER--YLIVLTQNCHLKIWDLTSFT  252 (729)
T ss_dssp             EEEEEE--TTT--EEEEEETTCEEEEEETTTTE
T ss_pred             EEEecc--CCc--EEEEEEcCCeEEEEEcCCCc
Confidence            444444  456  89999999999999999874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=90.66  E-value=0.93  Score=22.92  Aligned_cols=51  Identities=16%  Similarity=0.082  Sum_probs=31.5

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|..|+..++.. .   .+. ....+.++.+++++.  ++++. . ..+..||..+++
T Consensus        70 ~~~i~~~d~~~~~~-~---~~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~  120 (326)
T 2ghs_A           70 ERELHELHLASGRK-T---VHA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGV  120 (326)
T ss_dssp             GTEEEEEETTTTEE-E---EEE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCC
T ss_pred             CCEEEEEECCCCcE-E---EEE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCc
Confidence            45677777765432 1   121 234678899999887  56554 3 348888876653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=90.63  E-value=0.89  Score=24.94  Aligned_cols=34  Identities=18%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             cccEeEEEecCCCCc-EEEEEecCCCcEEEEECCC
Q 039404           29 VGGVNDIAFSHPNKQ-LYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~-~~l~s~~~~~~i~~w~~~~   62 (65)
                      ..+|..+.|||-+.. -.|++-..|+.|++||+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            467999999996431 0677777899999999975

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=90.56  E-value=0.89  Score=22.56  Aligned_cols=50  Identities=12%  Similarity=0.104  Sum_probs=32.2

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|..||..++.. .   .+ .....+.++++++++.  ++++.  +..|..||..++
T Consensus        34 ~~~i~~~d~~~~~~-~---~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~~g   83 (297)
T 3g4e_A           34 AKKVCRWDSFTKQV-Q---RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWKEQ   83 (297)
T ss_dssp             TTEEEEEETTTCCE-E---EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETTTT
T ss_pred             CCEEEEEECCCCcE-E---EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECCCC
Confidence            35666777665432 1   12 1245678999999998  66553  567888888765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=90.48  E-value=0.92  Score=22.57  Aligned_cols=30  Identities=17%  Similarity=0.172  Sum_probs=21.4

Q ss_pred             ccEeEEEecCCCCcEEEEEecCC------CcEEEEECC
Q 039404           30 GGVNDIAFSHPNKQLYVITCGDD------KTIKVWDAT   61 (65)
Q Consensus        30 ~~v~~~~~~~~~~~~~l~s~~~~------~~i~~w~~~   61 (65)
                      .....++|+|++.  .++.+...      +.|..|++.
T Consensus       188 ~~p~gl~~spdg~--~lyv~~~~~~~~~~~~i~~~~~~  223 (305)
T 3dr2_A          188 DHPNGLAFSPDEQ--TLYVSQTPEQGHGSVEITAFAWR  223 (305)
T ss_dssp             SSEEEEEECTTSS--EEEEEECCC---CCCEEEEEEEE
T ss_pred             CCCcceEEcCCCC--EEEEEecCCcCCCCCEEEEEEec
Confidence            3457899999998  56555443      678888764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.93  E-value=1.5  Score=24.67  Aligned_cols=54  Identities=17%  Similarity=0.070  Sum_probs=31.8

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+.-||+.+++..-.. ...   .+...-.....+.  +++.++.|+.++.+|.++|+
T Consensus       452 ~G~l~A~D~~tG~~~W~~-~~~---~~~~~g~~~tagg--~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEK-MER---FAVWGGTMATAGD--LVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CEEEEEECTTTCCEEEEE-EES---SCCCSBCEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             cCeEEEEECCCCCEEeEe-cCC---CCccCcceEecCC--EEEEECCCCeEEEEECCCCC
Confidence            467888888877633311 111   1111101112355  67778899999999999885

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=88.83  E-value=1.4  Score=22.40  Aligned_cols=57  Identities=16%  Similarity=0.074  Sum_probs=34.6

Q ss_pred             cCeEEEEECCCCceEeeeEEee----cccccEeEEEecCCCCcEEEEEec---CCCcEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLYVITCG---DDKTIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~---~~~~i~~w~~~~~   63 (65)
                      +..|.+||+.++..... ..+.    .+......+++++++.. .+++-.   .++.|.+||+.++
T Consensus        92 ~~~i~~~d~~tg~~~~~-~~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRV-IYLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             CCEEEEEETTTTEEEEE-EECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTC
T ss_pred             CCeEEEEECCCCeEEEE-EECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCC
Confidence            46788899876642221 1221    12234578899876552 445544   5788999998765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=86.67  E-value=1.7  Score=21.01  Aligned_cols=51  Identities=8%  Similarity=-0.018  Sum_probs=31.5

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ++.|..|+... . ... .........+..+.+.+++.  ++++...++.+..++.
T Consensus        77 ~~~i~~~~~~g-~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~  127 (299)
T 2z2n_A           77 ANKIGRITKKG-I-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD  127 (299)
T ss_dssp             TTEEEEECTTS-C-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred             CCeEEEECCCC-c-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC
Confidence            45566676542 2 111 11222344678899998887  7777666778888876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=86.11  E-value=1.9  Score=20.89  Aligned_cols=51  Identities=12%  Similarity=0.014  Sum_probs=31.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ++.|..|+. ++....  .........+..+++.+++.  ++++...++.+..++.
T Consensus       119 ~~~i~~~d~-~g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          119 GNRIGRITD-DGKIRE--YELPNKGSYPSFITLGSDNA--LWFTENQNNAIGRITE  169 (299)
T ss_dssp             TTEEEEECT-TCCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred             CceEEEECC-CCCEEE--ecCCCCCCCCceEEEcCCCC--EEEEeCCCCEEEEEcC
Confidence            345666666 332111  11222345678899998887  7776666778888877

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=85.92  E-value=2.3  Score=21.62  Aligned_cols=52  Identities=12%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .++.+.+||..+.....   .+..... -..++  +++.  .++.+..+..+.++|..+.
T Consensus       105 ~~~~v~v~D~~t~~~~~---ti~~~~e-G~glt--~dg~--~L~~SdGs~~i~~iDp~T~  156 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQVR---SFNYDGE-GWGLT--HNDQ--YLIMSDGTPVLRFLDPESL  156 (262)
T ss_dssp             SSSEEEEEETTTCCEEE---EEECSSC-CCCEE--ECSS--CEEECCSSSEEEEECTTTC
T ss_pred             eCCEEEEEECccCcEEE---EEECCCC-ceEEe--cCCC--EEEEECCCCeEEEEcCCCC
Confidence            35678888987755333   3332111 13444  3555  4444444678888888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=85.88  E-value=2.2  Score=21.54  Aligned_cols=53  Identities=9%  Similarity=0.092  Sum_probs=30.1

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .++.+.++|..+.....   .+......  ...+++++.  .++.+..++.+.+.|..+.
T Consensus        84 ~~~~v~viD~~t~~v~~---~i~~g~~~--g~glt~Dg~--~l~vs~gs~~l~viD~~t~  136 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIK---NFTHQMKD--GWGLATDGK--ILYGSDGTSILYEIDPHTF  136 (266)
T ss_dssp             TCSEEEEEETTTTEEEE---EEECCSSS--CCEEEECSS--SEEEECSSSEEEEECTTTC
T ss_pred             cCCEEEEEECCCCcEEE---EEECCCCC--eEEEEECCC--EEEEECCCCeEEEEECCCC
Confidence            35678888987654333   33211111  223444666  3444446789999998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=85.74  E-value=3.3  Score=23.28  Aligned_cols=54  Identities=17%  Similarity=0.195  Sum_probs=30.9

Q ss_pred             eEEEEECCCCceEeeeEEeec-ccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCC
Q 039404            7 IVQIYPCNGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNG   63 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~   63 (65)
                      .+.+||..+.... ....... +.....++++.+++.  +++.|+ .+..+.+||..+.
T Consensus       220 ~~~~yd~~t~~w~-~~~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          220 LTSSWDPSTGIVS-DRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             EEEEECTTTCCBC-CCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEEeCCCCcEE-eCcccCCCCCCccccccCCCCCC--EEEeCCCCCCceEEecCcCC
Confidence            4667887765422 1112221 222233466777888  677766 4568888887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=84.58  E-value=3.2  Score=23.67  Aligned_cols=44  Identities=20%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecc-cccEeEEEecCCCCcEEEEEe
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLYVITC   49 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~   49 (65)
                      ++.|+.++.||..+++.+.   .++.. .....-+.|..++.+ +++..
T Consensus       492 gt~dg~l~a~D~~tG~~lw---~~~~~~~~~~~p~ty~~~G~q-yv~~~  536 (689)
T 1yiq_A          492 GSADGRVIAYAADTGEKLW---EQPAASGVMAAPVTYSVDGEQ-YVTFM  536 (689)
T ss_dssp             ECTTSEEEEEETTTCCEEE---EEECSSCCCSCCEEEEETTEE-EEEEE
T ss_pred             ECCCCcEEEEECCCCccce---eeeCCCCcccCceEEEECCEE-EEEEE
Confidence            4678999999999887554   23322 222234666667775 55543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=83.95  E-value=3.8  Score=22.63  Aligned_cols=53  Identities=11%  Similarity=0.162  Sum_probs=34.0

Q ss_pred             CeEEEEECCCCceEeeeEEeec--cccc-EeEEEecCCCCcEEEEEec-------------------CCCcEEEEECCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDA--HVGG-VNDIAFSHPNKQLYVITCG-------------------DDKTIKVWDATNG   63 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~--~~~~-v~~~~~~~~~~~~~l~s~~-------------------~~~~i~~w~~~~~   63 (65)
                      +.+.++|..+.....   ....  .... --.+-|+|+++  .+++..                   .+..|.+||+.++
T Consensus       164 g~v~vlD~~T~~v~~---~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          164 GGILMLDHYSFEPLG---KWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             CEEEEECTTTCCEEE---ECCSBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CeEEEEECCCCeEEE---EEccCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            568888887654333   2321  1111 12477799999  777764                   3689999999765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=82.16  E-value=3.6  Score=21.00  Aligned_cols=20  Identities=10%  Similarity=0.245  Sum_probs=14.8

Q ss_pred             EEEEecCCCcEEEEECCCCC
Q 039404           45 YVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        45 ~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.++.++.+..+|..+|+
T Consensus       105 ~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             EEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEcCCCEEEEEECCCCC
Confidence            56666677888888887764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=82.16  E-value=4  Score=21.56  Aligned_cols=31  Identities=16%  Similarity=0.320  Sum_probs=24.9

Q ss_pred             cEeEEEecCCCCcEEEEEec-CCCcEEEEECCCC
Q 039404           31 GVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNG   63 (65)
Q Consensus        31 ~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~   63 (65)
                      ....+++++++.  ++++-. .++.|+.|++.++
T Consensus       324 ~P~gia~d~dG~--lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          324 QPNGMTVDEDGN--FYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             SEEEEEECTTCC--EEEEETTTTCEEEEEETTTT
T ss_pred             CCeEEEEeCCCC--EEEEeCCCCCEEEEEECCCC
Confidence            367899999998  777777 7889999996554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=81.07  E-value=3.8  Score=20.53  Aligned_cols=52  Identities=8%  Similarity=-0.011  Sum_probs=30.1

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      .++.+.+||..+.....   .+..... -..++  +++.. ++.+ ..++.+.++|..+.
T Consensus        83 ~~~~v~v~D~~tl~~~~---ti~~~~~-Gwglt--~dg~~-L~vS-dgs~~l~~iDp~t~  134 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRA---RFRYPGE-GWALT--SDDSH-LYMS-DGTAVIRKLDPDTL  134 (243)
T ss_dssp             SSSEEEEEETTTTEEEE---EEECSSC-CCEEE--ECSSC-EEEE-CSSSEEEEECTTTC
T ss_pred             eCCEEEEEECCcCcEEE---EEeCCCC-ceEEe--eCCCE-EEEE-CCCCeEEEEeCCCC
Confidence            35778889987754333   3332211 13444  35552 4444 45788999998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=81.07  E-value=4  Score=20.84  Aligned_cols=53  Identities=4%  Similarity=-0.056  Sum_probs=31.5

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.+.+||..+.+...   .+..... -..++  +++.  .|+.+..++.+.++|..+.+
T Consensus       114 ~~~~v~V~D~~Tl~~~~---ti~~~~e-GwGLt--~Dg~--~L~vSdGs~~l~~iDp~T~~  166 (268)
T 3nok_A          114 TEGLLFTWSGMPPQRER---TTRYSGE-GWGLC--YWNG--KLVRSDGGTMLTFHEPDGFA  166 (268)
T ss_dssp             SSCEEEEEETTTTEEEE---EEECSSC-CCCEE--EETT--EEEEECSSSEEEEECTTTCC
T ss_pred             cCCEEEEEECCcCcEEE---EEeCCCc-eeEEe--cCCC--EEEEECCCCEEEEEcCCCCe
Confidence            36778889988755333   3332111 13444  3566  45554558899999987653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=80.92  E-value=3.7  Score=20.30  Aligned_cols=52  Identities=8%  Similarity=0.017  Sum_probs=26.6

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ..++.+..+|.. +....   ........+..+...+++.   +..++.++.+..+|..
T Consensus       114 t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~  165 (330)
T 3hxj_A          114 SMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD  165 (330)
T ss_dssp             CTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT
T ss_pred             ecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC
Confidence            345667777765 33222   1222222334445555555   3445566777777765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=80.84  E-value=3.5  Score=19.95  Aligned_cols=52  Identities=12%  Similarity=0.027  Sum_probs=32.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      ++.|.+|+.. +....  ..+......+..+++.+++.  ++++...++.|..+|..
T Consensus        40 ~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           40 ANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred             CCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCC
Confidence            4567777765 32211  12223335678899988888  67666667788888765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=80.40  E-value=4.3  Score=20.73  Aligned_cols=55  Identities=9%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..++.|..+|..+++.... ........  .....  .+.  .++.++.++.+..+|..+|+
T Consensus       110 ~~~g~l~a~d~~tG~~~W~-~~~~~~~~--~~p~~--~~~--~v~v~~~~g~l~~~d~~tG~  164 (376)
T 3q7m_A          110 SEKAQVYALNTSDGTVAWQ-TKVAGEAL--SRPVV--SDG--LVLIHTSNGQLQALNEADGA  164 (376)
T ss_dssp             ETTSEEEEEETTTCCEEEE-EECSSCCC--SCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred             cCCCEEEEEECCCCCEEEE-EeCCCceE--cCCEE--ECC--EEEEEcCCCeEEEEECCCCc
Confidence            4466777888876653321 11111110  11111  133  46666778888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 5e-06
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 5/59 (8%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
             Y      ++     D       +  H   V+ +  +       V T   D  +K+W+
Sbjct: 287 AGYDDFNCNVWDALKADRAG---VLAGHDNRVSCLGVTDDGM--AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 31.6 bits (70), Expect = 0.003
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 28  HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
            + G+  ++FS   +   ++   DD    VWDA   
Sbjct: 269 IICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKA 302

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 1e-05
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           AH   +  ++  +     + ++C  D  +KVWD    
Sbjct: 11 KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLL 44

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 1e-05
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
          +  H   V  + F        +++  +D TIKVWD   G
Sbjct: 13 LSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETG 49

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 1   VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
                  ++++  + G  +     +  H   V  + F    K  ++++C DDKT++VWD 
Sbjct: 222 SGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDY 276

Query: 61  TNG 63
            N 
Sbjct: 277 KNK 279

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 24  EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
            ++AH   V  + F       YV+T   D+T+KVW+
Sbjct: 284 TLNAHEHFVTSLDFHKTAP--YVVTGSVDQTVKVWE 317

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 1  VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
          +  + H V IY  +G   V+ H E+  H G V  + ++  +    ++TCG D+   VW 
Sbjct: 24 ICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 9e-05
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 2/50 (4%)

Query: 16  GDEVRQHLEIDAHVGGVNDIAFS--HPNKQLYVITCGDDKTIKVWDATNG 63
           G           H   V+ I+       K     T G D  + +WD  + 
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.1 bits (71), Expect = 0.002
 Identities = 3/36 (8%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           V  ++  A++       +  C ++  + +++ +  
Sbjct: 6  LVEPISCHAWNKDRT--QIAICPNNHEVHIYEKSGN 39

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 4e-05
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
          H   +  ++ S   K   + +   +  I  WD + G
Sbjct: 11 HNKAITALSSSADGK--TLFSADAEGHINSWDISTG 44

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.2 bits (76), Expect = 4e-04
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6   HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
           + V ++  N   +    ++    +  VN + + +      +++ G D  IK W+
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQDSNIKFWN 296

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.8 bits (83), Expect = 4e-05
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 24  EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           ++      + D+  S   K   V+   DD  I  +     
Sbjct: 309 KVTEVKNNLTDLRLSADRK--TVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 33.3 bits (74), Expect = 9e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 4  SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
          SR    I   +G   ++           +  +      K  ++    +   + ++D   G
Sbjct: 22 SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 9e-05
 Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           A    ++DI        L  +    D ++ V+     
Sbjct: 8  QAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQ 43

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.5 bits (72), Expect = 0.001
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 20  RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           R +L+       VN I FS  +K LY  T G D  I  W+    
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLY--TAGSDGIISCWNLQTR 283

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.9 bits (81), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 28  HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
               ++ I  S   K L       DKT+ + DA +G
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 25  IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
           ++AH  GVN++ +  P+    +++ G D  IK W+
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (74), Expect = 8e-04
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 15 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
          G DEV + +    H  G+  +  +       +I+   D  I  W +++ 
Sbjct: 1  GHDEVLKTIS--GHNKGITALTVN------PLISGSYDGRIMEWSSSSM 41

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 33.7 bits (75), Expect = 5e-04
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 4/62 (6%)

Query: 2   AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61
                        G +++   + +         IA +   K++YV       T+ V D  
Sbjct: 219 VDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGKKVYV-ALSFCNTVSVIDTA 274

Query: 62  NG 63
             
Sbjct: 275 TN 276

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 6e-04
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 27  AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
                V     S  +K  Y++T   DK   V++
Sbjct: 304 KESSSVLSCDISVDDK--YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (72), Expect = 0.001
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
          H   V  +  S+P + +Y    G    +KVWD ++ 
Sbjct: 50 HGEVVCAVTISNPTRHVY---TGGKGCVKVWDISHP 82

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 33.4 bits (75), Expect = 6e-04
 Identities = 3/37 (8%), Positives = 12/37 (32%)

Query: 27  AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
           ++    + I  +              + + ++DA + 
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (74), Expect = 7e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 25  IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
           +  H G V  + F        +++   D TI +WD
Sbjct: 263 LVEHSGRVFRLQFDEF----QIVSSSHDDTILIWD 293

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.2 bits (74), Expect = 8e-04
 Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 6/41 (14%)

Query: 24  EIDAHVGGVNDIAFS-----HPNKQLYVITCGDDKTIKVWD 59
            +  H   V  +A +      P       T   D   ++W 
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWK 384

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.2 bits (71), Expect = 0.002
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 19 VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
          V Q   +  H+  V        N   YVIT  DDK I+V+D+ N 
Sbjct: 2  VPQRTTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINK 43

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 31.2 bits (69), Expect = 0.004
 Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 3   YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT--IKVWDA 60
             R++ +I   +         E++        ++FS    + Y + C         +  +
Sbjct: 389 GGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFS-KEAKYYQLRCSGPGLPLYTLHSS 447

Query: 61  TNG 63
            N 
Sbjct: 448 VND 450

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 31.3 bits (69), Expect = 0.004
 Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 1/47 (2%)

Query: 17 DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
            V + + I            +   +  Y  T    +++   D   G
Sbjct: 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYA-TVNKSESLVKIDLVTG 66

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.4 bits (69), Expect = 0.004
 Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 18  EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
           +  Q   +D    G   +          +I+   D T+  ++
Sbjct: 284 KCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYE 324

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.55
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.53
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.53
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.49
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.47
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.45
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.45
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.45
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.44
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.43
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.43
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.39
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.35
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.35
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.32
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.32
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.3
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.29
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.27
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.25
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.25
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.23
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.22
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.22
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.21
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.17
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.12
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.1
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.09
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.02
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.02
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.99
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.96
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.69
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.61
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.11
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.09
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.08
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.93
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.84
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.21
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.41
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.59
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	91.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	90.97
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.74
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	89.67
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.46
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	88.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	87.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.59
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.41
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.05
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	86.38

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=1.2e-14  Score=70.50  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=46.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      |+.|+.|++||+.++....   .+.+|.+.|.+++|+|++.  ++++++.|+.|++||
T Consensus       288 g~~dg~i~iwd~~~~~~~~---~~~~H~~~V~~l~~s~d~~--~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKADRAG---VLAGHDNRVSCLGVTDDGM--AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--CEEEEETTSCEEEEC
T ss_pred             EECCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEeCCCC--EEEEEccCCEEEEeC
Confidence            5678999999998765443   6889999999999999999  899999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.4e-14  Score=69.31  Aligned_cols=53  Identities=23%  Similarity=0.441  Sum_probs=46.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ++.|+.|++||+.++...   ..+.+|...|.+++|+|++.  +|++++.|++|++||
T Consensus       265 ~~~dg~i~iwd~~~~~~~---~~~~~h~~~V~~~~~s~~~~--~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         265 CADDKTLRVWDYKNKRCM---KTLNAHEHFVTSLDFHKTAP--YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EETTTEEEEECCTTSCCC---EEEECCSSCEEEEEECSSSS--CEEEEETTSEEEEEC
T ss_pred             EECCCeEEEEECCCCcEE---EEEcCCCCCEEEEEEcCCCC--EEEEEeCCCeEEEeC
Confidence            567899999999876533   36888999999999999999  899999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=2.3e-14  Score=71.32  Aligned_cols=59  Identities=27%  Similarity=0.516  Sum_probs=50.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++|+..++. ......+++|.+.|.+++|+|++.  ++++++.|+.+++||+.++
T Consensus        25 ~~~~~~i~iw~~~~~~-~~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_          25 CPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             ECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred             EeCCCEEEEEECCCCC-EEEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence            5678999999987653 344557889999999999999999  9999999999999998654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.2e-13  Score=69.15  Aligned_cols=56  Identities=20%  Similarity=0.366  Sum_probs=45.3

Q ss_pred             eEEEEECCCCceEeee----------EEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            7 IVQIYPCNGGDEVRQH----------LEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .|++||++++......          ..+.+|.+.|.+++|+|++.  +|++++.|++|++||+.+|+
T Consensus       257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~--~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTE
T ss_pred             eeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC--eeEEECCCCEEEEEECCCCC
Confidence            5899999876533221          12357999999999999999  99999999999999998874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.1e-13  Score=65.51  Aligned_cols=57  Identities=23%  Similarity=0.570  Sum_probs=48.2

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+.|+.|++||+.++...   ..+.+|.+.|.+++|+|+ .  .+++++.|+.+++|+....
T Consensus        28 tgs~Dg~i~vWd~~~~~~~---~~l~~H~~~V~~l~~s~~-~--~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2          28 TGADDKMIRVYDSINKKFL---LQLSGHDGGVWALKYAHG-G--ILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEETTTEEEEEETTTTEEE---EEEECCSSCEEEEEEETT-T--EEEEEETTCCEEEEETTTT
T ss_pred             EEeCCCeEEEEECCCCcEE---EEEECCCCCEEEEEEcCC-C--EEEEEeccccccccccccc
Confidence            3678999999999876533   368899999999999874 5  7899999999999998764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=2.1e-13  Score=68.25  Aligned_cols=61  Identities=13%  Similarity=0.220  Sum_probs=47.4

Q ss_pred             ccccCeEEEEECCCCceEee---eEEeecccccEeEEEecCCCCcEEEEEecCCC---cEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK---TIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~---~i~~w~~~~~~   64 (65)
                      |+.|+.|++||+.++.....   ...+.+|...|.+++|+|++.  +|++++.|+   .+++||+.+++
T Consensus       201 gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~sgs~D~t~~~i~lwd~~~g~  267 (393)
T d1sq9a_         201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS--LLAIAHDSNSFGCITLYETEFGE  267 (393)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT--EEEEEEEETTEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeecccccccccccccccccccceEEEcccccccc--eeeeecCCCCcceeeecccccce
Confidence            67899999999987653322   224567899999999999999  999998886   48999998763

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.45  E-value=1.7e-13  Score=66.02  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.+++||+.++........+.+|...|.+++|+|++.  ++++++.|+.|++||++++
T Consensus       197 ~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV--RLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc--ceEEEcCCCEEEEEECCCC
Confidence            56788999999877654444445678899999999999999  9999999999999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.3e-13  Score=63.29  Aligned_cols=57  Identities=25%  Similarity=0.468  Sum_probs=47.7

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +|+.|+.|++||+.++....   .+++|.+.|.+++|  ++.  ++++++.|+.+++|++..+.
T Consensus        30 sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          30 SGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             EEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESSSCC
T ss_pred             EEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeeccccccccccccccccc
Confidence            36789999999998765433   68899999999987  466  89999999999999997753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=3e-13  Score=65.09  Aligned_cols=62  Identities=8%  Similarity=-0.077  Sum_probs=48.1

Q ss_pred             CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +|+.|++|++||+.............+|...|.+++|+|.+.. ++++++.|+.+++|+...+
T Consensus        28 s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w~~~~~   89 (342)
T d1yfqa_          28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVDLIGS   89 (342)
T ss_dssp             EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEECSSSS
T ss_pred             EEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeeeecccc
Confidence            3678999999998764433323334468999999999987654 7999999999999998765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=6.9e-13  Score=63.37  Aligned_cols=58  Identities=24%  Similarity=0.539  Sum_probs=50.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++|+..++...   ..+.+|...|.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       223 ~~~d~~i~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCL---MTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             EETTSEEEEEETTTTEEE---EEEECCSSCEEEEEECSSSS--CEEEEETTTEEEEECCTTSC
T ss_pred             ccCCCEEEEEECCCCcEE---EEEeCCCCCEEEEEECCCCC--EEEEEECCCeEEEEECCCCc
Confidence            467899999999876533   36788999999999999999  89999999999999998765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3.1e-13  Score=66.77  Aligned_cols=55  Identities=15%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEe------cCCCCcEEEEEecCCCcEEEEECC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAF------SHPNKQLYVITCGDDKTIKVWDAT   61 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~l~s~~~~~~i~~w~~~   61 (65)
                      |+.|+.|++||+.++....   .+++|.+.|.++++      +|++.  ++++++.|++|++|+++
T Consensus       326 g~~dg~i~vwd~~~~~~~~---~l~~H~~~V~~~~~~~~~~~spd~~--~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         326 GSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSSLGPEYN--VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSCTTCTTCE--EEEEEETTSEEEEEEEE
T ss_pred             EeCCCEEEEEECCCCcEEE---EEeCCCCCEEEEEEecCcccCCCCC--EEEEEeCCCEEEEEeee
Confidence            5678999999998765433   68899999998865      56777  89999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.7e-12  Score=63.74  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      ++.|+.|++||+.++....   . ..|...|.+++|+|++.  +|++++.|+.|++||+
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~---~-~~~~~~v~~~~~s~d~~--~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIF---Q-SKESSSVLSCDISVDDK--YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EETTSEEEEEETTTCCEEE---E-EECSSCEEEEEECTTSC--EEEEEETTSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEE---E-ccCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEEE
Confidence            5678999999998765443   2 34778899999999999  9999999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=5.7e-12  Score=60.93  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      +..|+.+++||+.++....   .+.+|...|.+++|+|++.  ++++++.|+.+++|+++..
T Consensus       202 ~~~d~~v~i~d~~~~~~~~---~~~~h~~~i~~v~~~p~~~--~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EETTTEEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT
T ss_pred             eecCceEEEEECCCCcEEE---EEeCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeeccc
Confidence            4678999999998765333   6788999999999999999  9999999999999999764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=5.4e-12  Score=61.78  Aligned_cols=56  Identities=14%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.+.+|++.+.....   .+.+|...|.+++|+|++.  ++++++.|+.|++||+.++.
T Consensus        36 ~~~~v~i~~~~~~~~~~---~~~~H~~~v~~~~~sp~g~--~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          36 NGTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             ETTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESSSTT
T ss_pred             eCCEEEEEECCCCceeE---EEcCCCCCEEEEEEeCCCC--eEeccccCceEeeeeeeccc
Confidence            35568899997654333   5778999999999999999  99999999999999997753

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.32  E-value=9.8e-12  Score=60.84  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.+....   ..+..|...|.++.|+|++.  ++++++.|+.+++|+..++
T Consensus       165 gs~d~~i~i~d~~~~~~~---~~~~~~~~~i~~v~~~p~~~--~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         165 GSDDNTVAIFEGPPFKFK---STFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             EETTSCEEEEETTTBEEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTC
T ss_pred             cccccccccccccccccc---cccccccccccccccCcccc--ccccccccccccccccccc
Confidence            567899999999875433   35778899999999999999  9999999999999998765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=9e-12  Score=61.08  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+++|+....+..........|...|.+++|+|+... ++++++.|+.|++||+++++
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~-~l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCC
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccce-eccccccccceeeeeecccc
Confidence            567899999998765544433345567888999999997543 89999999999999998764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.7e-11  Score=60.15  Aligned_cols=57  Identities=19%  Similarity=0.407  Sum_probs=48.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+++||+......    ....|...|.+++|+|++.  ++++++.|+.|++||..+++
T Consensus       242 ~~~d~~i~i~d~~~~~~~----~~~~~~~~i~~v~~s~~g~--~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         242 GMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EETTSCEEEEETTSSCEE----EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             eccccccccccccccccc----cccccccccceEEECCCCC--EEEEEeCCCeEEEEECCCCC
Confidence            567899999999876433    3567889999999999999  99999999999999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.29  E-value=3.1e-11  Score=60.96  Aligned_cols=56  Identities=18%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..|+.|++||+.+++...   .+..+. .+..++|+|+++  ++++++.|+.+++||+.+++
T Consensus        39 ~~dg~v~vwD~~t~~~~~---~l~~g~-~~~~vafSPDGk--~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          39 RDAGQIALVDGDSKKIVK---VIDTGY-AVHISRMSASGR--YLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             TTTTEEEEEETTTCSEEE---EEECCS-SEEEEEECTTSC--EEEEEETTSEEEEEETTSSS
T ss_pred             cCCCEEEEEECCCCcEEE---EEeCCC-CeeEEEECCCCC--EEEEEeCCCCEEEEEccCCc
Confidence            468999999999876544   466553 578999999999  89999999999999998764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-11  Score=59.19  Aligned_cols=59  Identities=17%  Similarity=0.144  Sum_probs=46.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEE--eecccccEeEEEecCCCCcEEEEEecCCCc----EEEEECCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLE--IDAHVGGVNDIAFSHPNKQLYVITCGDDKT----IKVWDATN   62 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~----i~~w~~~~   62 (65)
                      |+.|+.|++||+.++........  ..+|...|.+++|+|++.  ++++++.||+    +.+||+..
T Consensus       276 ~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~--~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         276 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL--VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE--EEEEECSSSSSCCEEEEEECCC
T ss_pred             EcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC--EEEEEeCCCCCeeEEEEEeCCC
Confidence            57899999999988764442221  235778899999999988  8999988885    99999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=6.9e-12  Score=60.10  Aligned_cols=54  Identities=24%  Similarity=0.457  Sum_probs=43.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      |+.|+.|++|+++....  ....+.+|...|.++.|+|++   .+++++.|+.|++|++
T Consensus       233 gs~D~~i~iw~~~~~~~--~~~~~~~h~~~V~~v~~~~~~---~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         233 GSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPS---TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEESSCTTC--CEEETTSSTTCEEEEEEEETT---EEEEEETTSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCCe--EEEEeCCCCCCeEEEEECCCC---EEEEEECCCeEEEEEE
Confidence            56789999999876332  223567899999999999864   5778899999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=9.9e-12  Score=60.94  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=44.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEec---CCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFS---HPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|++||+.++....   .+.+|...+..+.|+   |++.  ++++++.|+.|++||+++++
T Consensus       224 ~~~d~~i~iwd~~~~~~~~---~l~~~~~~v~~~~~s~~~~dg~--~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         224 VGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWLDSQ--KFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             EETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEESSSS--EEEEEETTSEEEEEETTTTE
T ss_pred             cccccceeeeeeccccccc---cccccccccccceeeeeccCCC--EEEEEeCCCeEEEEECCCCC
Confidence            5678999999998765443   566777665544444   5777  89999999999999998764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.23  E-value=3.2e-11  Score=57.94  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=36.7

Q ss_pred             EEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404           23 LEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        23 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.+.+|.+.|.+++|+|++.  ++++++.|+.|++||+.+++
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~--~l~s~s~Dg~v~vWd~~~~~   45 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGI   45 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCC
T ss_pred             eEcCCCCCCcEEEEECCCCC--EEEEEcCCCeEEEEECCCCc
Confidence            36789999999999999999  99999999999999998764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.1e-11  Score=57.35  Aligned_cols=55  Identities=24%  Similarity=0.504  Sum_probs=46.5

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++...   ..+.+|...|.+++|++  .  ++++++.|+.+++|+....
T Consensus        33 gs~Dg~i~vWd~~~~~~~---~~~~~h~~~V~~v~~~~--~--~l~s~s~D~~~~~~~~~~~   87 (342)
T d2ovrb2          33 GSDDNTLKVWSAVTGKCL---RTLVGHTGGVWSSQMRD--N--IIISGSTDRTLKVWNAETG   87 (342)
T ss_dssp             EETTSCEEEEETTTCCEE---EECCCCSSCEEEEEEET--T--EEEEEETTSCEEEEETTTT
T ss_pred             EeCCCeEEEEECCCCCEE---EEEeCCCCCEEEEEeCC--C--ccccceecccccccccccc
Confidence            678999999999876543   36889999999999975  4  7999999999999998653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=7.2e-11  Score=56.50  Aligned_cols=58  Identities=12%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCC----------CcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPN----------KQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.+.....  ..+.+|...|.+++|+|.+          .  ++++++.|+.+++|+++.+
T Consensus       180 g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~--~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKT--SRWAFRTSKINAISWKPAEKGANEEEIEED--LVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             EETTSCEEEEETTTTEEEE--CCSCCCSSCEEEEEECCCC------CCSCC--EEEEEETTSCEEEEESSCT
T ss_pred             ccccccccceeeccccccc--ccccccccccceeeecccccccccccCCCC--eeEeecCCCeEEEEECCCC
Confidence            5678999999998764322  2456789999999998743          4  7999999999999998653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=4e-11  Score=59.14  Aligned_cols=61  Identities=15%  Similarity=0.312  Sum_probs=45.9

Q ss_pred             ccccCeEEEEECCCCceE---------eeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEV---------RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+++||+......         ........|...|.+++|+|++.  ++++++.|+.|++||+++++
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC--EEEEEETTSEEEEEETTTCC
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC--EEEEEeCCCEEEEEECCCCc
Confidence            567899999998653211         11223456788999999999999  99999999999999998775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=7.5e-11  Score=58.54  Aligned_cols=59  Identities=8%  Similarity=0.051  Sum_probs=48.2

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      |+.|+.|++||+.++. ......+.+|...+.+++|+|++.  .+++++.|+.+++|++...
T Consensus        69 ~s~D~~i~vWd~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRT-WKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             EETTSCEEEEEEETTE-EEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETT
T ss_pred             EECCCeEEEEeecccc-cccccccccccccccccccccccc--cceeecccCcceeeeeecc
Confidence            5678999999997653 333345667888999999999999  9999999999999987543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.12  E-value=3.1e-10  Score=55.23  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=43.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.+++||+.+++.       ..+.+.+..++|+|+++  .|++++.|+.|++||+..++
T Consensus       294 ~~~~~~i~~~d~~~~~~-------~~~~~~v~~~~~SpDG~--~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKV-------TEVKNNLTDLRLSADRK--TVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             CCCCEEEEEEETTTCCE-------EEEEEEEEEEEECTTSC--EEEEEETTSCEEEEESSCTT
T ss_pred             cCCCCEEEEEECCCCeE-------EEecCCcCEEEECCCCC--EEEEEECCCeEEEEECCCCC
Confidence            34577899999987542       22345688999999999  89999999999999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=1.3e-09  Score=55.50  Aligned_cols=56  Identities=13%  Similarity=0.095  Sum_probs=46.1

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.++.|.+||..++....   .+..+ ..+..++|+|+++  ++++++.|+.+.+||+.+++
T Consensus        39 ~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             TTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSS
T ss_pred             cCCCEEEEEECCCCcEEE---EEeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCC
Confidence            457899999999876554   45555 3588999999999  89999999999999998764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=5.3e-10  Score=53.96  Aligned_cols=55  Identities=22%  Similarity=0.453  Sum_probs=44.1

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++|+..++....   .+.+|...|.+++++  +.  ++++++.|+.|++||+.++
T Consensus       219 ~~~d~~i~i~d~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         219 ASMDTTIRIWDLENGELMY---TLQGHTALVGLLRLS--DK--FLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             EETTSCEEEEETTTCCEEE---EECCCSSCCCEEEEC--SS--EEEEECTTSEEEEEETTTC
T ss_pred             ccccceEEeeecccccccc---ccccccccccccccc--cc--eeeeeeccccccccccccc
Confidence            4568889999998765433   577888889999886  35  8889999999999998765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-10  Score=54.80  Aligned_cols=54  Identities=17%  Similarity=0.274  Sum_probs=41.1

Q ss_pred             ccccCeEEEEECCCCc------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404            2 AYSRHIVQIYPCNGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD   59 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~   59 (65)
                      ++.|+.|++||+....      .......+.+|.+.|.+++|+  +.  +|++++.|++|++||
T Consensus       234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~--~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF--QIVSSSHDDTILIWD  293 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SS--CEEECCSSSEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CC--EEEEEecCCEEEEeC
Confidence            5678999999964211      112234678899999999995  55  799999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=1.8e-10  Score=55.28  Aligned_cols=38  Identities=13%  Similarity=0.103  Sum_probs=34.2

Q ss_pred             EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ..++|.+.|.+++|+|++.  +|++++.|++|++||+.++
T Consensus         6 ~~~~h~d~I~~l~fsp~~~--~L~s~s~Dg~v~iwd~~~~   43 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQ   43 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCCCEEEEEEeCCCC--EEEEEECCCeEEEEEccCC
Confidence            4578999999999999999  9999999999999998654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.99  E-value=2.1e-09  Score=51.81  Aligned_cols=60  Identities=7%  Similarity=-0.045  Sum_probs=44.4

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|.+||+.+...... .....+...+..++|+|+++  ++ ++++.++.|.+||+.+++
T Consensus         7 ~~~d~~v~v~D~~s~~~~~~-i~~~~~~~~~~~i~~spDg~--~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           7 PARPDKLVVIDTEKMAVDKV-ITIADAGPTPMVPMVAPGGR--IAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EETTTEEEEEETTTTEEEEE-EECTTCTTCCCCEEECTTSS--EEEEEETTTTEEEEEETTTCC
T ss_pred             EcCCCEEEEEECCCCeEEEE-EECCCCCCCccEEEECCCCC--EEEEEECCCCeEEEEECCCCc
Confidence            56789999999988653331 12223445567899999998  55 566788999999998875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.96  E-value=3.1e-09  Score=51.18  Aligned_cols=55  Identities=9%  Similarity=0.131  Sum_probs=44.0

Q ss_pred             ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      .++.+++||+.++....   .+ .+...+.+++|+|++.  .+++++.++.|.+||..+++
T Consensus       258 ~~~~i~v~d~~~~~~~~---~~-~~~~~~~~~~~s~dG~--~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         258 AYNVLESFDLEKNASIK---RV-PLPHSYYSVNVSTDGS--TVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EESEEEEEETTTTEEEE---EE-ECSSCCCEEEECTTSC--EEEEESBSSEEEEEETTTCC
T ss_pred             ccccEEEEECCCCcEEE---EE-cCCCCEEEEEECCCCC--EEEEEeCCCcEEEEECCCCc
Confidence            46789999998875443   22 2445678999999999  89999999999999998764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=7.7e-09  Score=49.92  Aligned_cols=59  Identities=8%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEE-EecCCCcEEEEECCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDKTIKVWDATNG   63 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~~i~~w~~~~~   63 (65)
                      ++.|+.|++|++.....+.....+ .+.+.+..++|+|+++  +|+ ++..|+.|.+|++...
T Consensus        10 ~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~--~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_          10 SPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKR--YLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSS--EEEEEETTTTEEEEEEECTT
T ss_pred             CCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCC--EEEEEECCCCeEEEEEEeCC
Confidence            457899999998764434332233 4667889999999999  664 5556899999988654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.88  E-value=1.1e-08  Score=49.43  Aligned_cols=58  Identities=7%  Similarity=-0.041  Sum_probs=43.6

Q ss_pred             ccccCeEEEEECCCCceEeeeEEee-cccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.++.|.+||+.+++...   .++ .+.....+++|+|++.  ++ +++..++.|.+||+.+++
T Consensus        14 ~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~--~l~v~~~~~~~v~~~d~~t~~   73 (346)
T d1jmxb_          14 TNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNR--TAYVLNNHYGDIYGIDLDTCK   73 (346)
T ss_dssp             EETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSS--EEEEEETTTTEEEEEETTTTE
T ss_pred             EcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCC--EEEEEECCCCcEEEEeCccCe
Confidence            5668899999998875433   333 3444567999999998  55 566688999999998763

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.85  E-value=1e-08  Score=49.47  Aligned_cols=54  Identities=9%  Similarity=0.070  Sum_probs=42.3

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+.+||..+++...   .+. +...+.+++|+|++.  .+++++.|+.|.+||..+++
T Consensus       271 ~~~v~v~d~~~~~~~~---~~~-~~~~~~~va~s~DG~--~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         271 LNRLAKYDLKQRKLIK---AAN-LDHTYYCVAFDKKGD--KLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             ESEEEEEETTTTEEEE---EEE-CSSCCCEEEECSSSS--CEEEESBSSEEEEEETTTTE
T ss_pred             CCeEEEEECCCCcEEE---EEc-CCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECccCC
Confidence            3578899998765333   232 344688999999999  88899999999999998864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.81  E-value=5.7e-08  Score=46.18  Aligned_cols=54  Identities=17%  Similarity=0.103  Sum_probs=40.8

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|.+||..++....   .+.. ...+.+++|+|+++  .+ ++++.++.|.+||+.+++
T Consensus       223 ~~~v~v~D~~t~~~~~---~~~~-~~~~~~va~spdg~--~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         223 FNTVSMIDTGTNKITA---RIPV-GPDPAGIAVTPDGK--KVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             CCEEEEEETTTTEEEE---EEEC-CSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTE
T ss_pred             eeeeeeeecCCCeEEE---EEcC-CCCEEEEEEeCCCC--EEEEEECCCCeEEEEECCCCe
Confidence            4679999998765333   3433 34578999999998  55 577789999999998874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.80  E-value=3.9e-08  Score=47.72  Aligned_cols=53  Identities=19%  Similarity=0.366  Sum_probs=44.9

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..|++||..++...    .+..|...+.+++|+|++.  ++++++.++.+.+|+..+++
T Consensus        66 ~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          66 DFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             EEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccc
Confidence            36899999876532    4667889999999999999  99999999999999998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.78  E-value=3.8e-08  Score=46.77  Aligned_cols=57  Identities=7%  Similarity=0.085  Sum_probs=42.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.|.+||+.+++...   .++.. .....++|+|+++  ++ +++..++.|.+||+.+++
T Consensus         8 ~~~~~~v~v~D~~t~~~~~---~i~~g-~~p~~va~spdG~--~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           8 NSESDNISVIDVTSNKVTA---TIPVG-SNPMGAVISPDGT--KVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEE---EEECS-SSEEEEEECTTSS--EEEEEEGGGTEEEEEETTTTE
T ss_pred             ECCCCEEEEEECCCCeEEE---EEECC-CCceEEEEeCCCC--EEEEEECCCCEEEEEECCCCc
Confidence            3567899999998875433   34322 3468899999999  65 567788999999998764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.72  E-value=1.3e-07  Score=46.34  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+.+||..++....   .+ .+...+..++|+|+++.+++++++.|++|++||..+++
T Consensus       297 ~~~v~~~d~~t~~~~~---~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         297 AKEVTSVTGLVGQTSS---QI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CCeEEEEECCCCcEEE---Ee-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            4567888887765333   23 34566789999999984234678899999999999885

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.69  E-value=1.8e-08  Score=51.21  Aligned_cols=62  Identities=6%  Similarity=-0.219  Sum_probs=43.8

Q ss_pred             ccccCeEEEEECCCCce--EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+.+||+.++..  ...+....+|.+.+....|+|+++. ++++++.++.+.+||..+++
T Consensus        79 ~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2          79 IGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             EETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCC
T ss_pred             EcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCcccc
Confidence            45689999999876542  2222223345566677788999993 35678889999999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.61  E-value=4.1e-08  Score=49.48  Aligned_cols=62  Identities=2%  Similarity=-0.209  Sum_probs=43.9

Q ss_pred             ccccCeEEEEECCCCceEe--eeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.|+.+++||+.++....  .+....+|...+.++.|+|+++. +++++..++.+.+||..+++
T Consensus        79 ~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~  142 (426)
T d1hzua2          79 IGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLE  142 (426)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCC
T ss_pred             EeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccc
Confidence            4568999999998765221  12223456666778889999993 34556688999999988753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=7.1e-07  Score=43.34  Aligned_cols=55  Identities=22%  Similarity=0.348  Sum_probs=39.8

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..|.+||..+++...   .+. +...+.+++|+|+++.+++++++.++.|.+||.++++
T Consensus       280 ~~v~v~d~~t~~~~~---~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         280 RFVVVLDAKTGERLA---KFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEEEEETTTCCEEE---EEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CeEEEEeCCCCcEEE---Eec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            468899988765333   232 2345689999999874245667789999999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=1.2e-05  Score=39.53  Aligned_cols=55  Identities=9%  Similarity=0.096  Sum_probs=38.5

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ..+.+||..+++...   .+. ....+..++|+|+++.+++++...++.|.+||..+++
T Consensus       294 ~~v~v~D~~t~~~~~---~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         294 ENTSSVTASVGQTSG---PIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEEEEESSSCCEEE---CCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             ceEEEEECCCCcEeE---Eec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            357788988765333   222 2345788999999864134566778999999998875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.5e-05  Score=38.14  Aligned_cols=57  Identities=14%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEE--CCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWD--ATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~--~~~~   63 (65)
                      ++.+.+|++.....................++|+|+++  +++++ ..++.|.+|+  ..+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk--~l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         251 ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK--YLIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS--EEEEECTTTCEEEEEEEETTTT
T ss_pred             CCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCC--EEEEEECCCCeEEEEEEECCCC
Confidence            45677777654332222112223334567899999999  66554 5678999984  4554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.08  E-value=9.4e-06  Score=39.32  Aligned_cols=53  Identities=9%  Similarity=0.169  Sum_probs=36.8

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe----------cCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC----------GDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~~~~i~~w~~~~~~   64 (65)
                      +..+.+||..++....   .+..+.  ...++|+|+++  .++..          +.++.|.+||..+++
T Consensus        27 ~~~v~v~D~~tg~~~~---~~~~g~--~~~~a~SpDg~--~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~   89 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIG---MIDGGF--LPNPVVADDGS--FIAHASTVFSRIARGERTDYVEVFDPVTLL   89 (355)
T ss_dssp             SEEEEEEETTTTEEEE---EEEECS--SCEEEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             cCeEEEEECCCCcEEE---EEECCC--CCceEEcCCCC--EEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence            4568899998875433   344333  34789999999  45432          347889999998764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.93  E-value=7.4e-05  Score=36.42  Aligned_cols=52  Identities=8%  Similarity=0.089  Sum_probs=36.5

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec----------CCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG----------DDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~~~~i~~w~~~~~~   64 (65)
                      ..+.+||..+++...   .+..+..  ..+.|+|++.  .++.++          .++.+.+||..+++
T Consensus        47 ~~v~v~D~~tg~~~~---~~~~~~~--~~~a~SpDG~--~l~va~~~~~~~~~~~~~~~v~v~D~~t~~  108 (373)
T d2madh_          47 IQQWVLDAGSGSILG---HVNGGFL--PNPVAAHSGS--EFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             ceEEEEECCCCCEEE---EEeCCCC--ccEEEcCCCC--EEEEEeecCCcccccccceEEEEEECCCCc
Confidence            467888988765443   3444433  3789999999  666653          45789999998764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.84  E-value=3.1e-05  Score=39.23  Aligned_cols=59  Identities=10%  Similarity=0.179  Sum_probs=41.1

Q ss_pred             ccCeEEEEECCCCceEeee--EEeecccccEeEEEecCCCCcEEEEEec---------CCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQH--LEIDAHVGGVNDIAFSHPNKQLYVITCG---------DDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~---------~~~~i~~w~~~~~~   64 (65)
                      .++.+.+|+..++......  ..+..+...+.+++|+|+++  .|+.++         .++.+.+||+.+++
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~--~i~~~~~~~~~~r~s~~~~~~l~d~~~~~  103 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS--EEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC--EEEEEECCcceeeeccCceEEEEECCCCc
Confidence            4667899999887643211  12344556789999999999  776653         34678899998763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=0.00011  Score=36.13  Aligned_cols=59  Identities=7%  Similarity=-0.062  Sum_probs=37.9

Q ss_pred             cccCeEEEEECCCCceEeeeEEeecc-----cccEeEEEecCCCCcEEEEEe-cCCCcEEEEECCCCC
Q 039404            3 YSRHIVQIYPCNGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDATNGV   64 (65)
Q Consensus         3 ~~~~~i~i~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~~~~   64 (65)
                      ..|+.|.+||..+.+..... .....     ......++|+|+++  +++.+ ..++.+.+||+.+++
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i-~~p~~~~~~~g~~p~~~a~SpDGk--~l~va~~~~~~v~~~d~~~~~  157 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADI-ELPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEE-EETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTE
T ss_pred             ccCCeEEEEECCCCcEeeee-cCCccceecccCCccceEECCCCC--EEEEEeCCCCeEEEEECCCCc
Confidence            45678999999876543321 11111     11224689999999  55554 467899999987653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.66  E-value=9.6e-05  Score=37.41  Aligned_cols=53  Identities=13%  Similarity=-0.008  Sum_probs=39.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      ++.+.+||+.++. ..   .+..+...+..+.|+|++.  .++.. .++.+.+|+..++.
T Consensus        91 ~~~~~l~d~~~~~-~~---~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~  143 (470)
T d2bgra1          91 TASYDIYDLNKRQ-LI---TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLP  143 (470)
T ss_dssp             EEEEEEEETTTTE-EC---CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSC
T ss_pred             CceEEEEECCCCc-cc---ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCc
Confidence            4567889998764 22   3566778889999999999  66664 46788999887664

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.21  E-value=0.045  Score=28.27  Aligned_cols=36  Identities=14%  Similarity=0.102  Sum_probs=26.4

Q ss_pred             eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404           25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus        25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      ++...+ ...+.++|+++. .++++..++++.+||++.
T Consensus       254 IPvgks-PhGv~vSPDGky-l~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         254 IPVPKN-PHGLNTSPDGKY-FIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             ECCBSS-CCCEEECTTSCE-EEEECTTSSBEEEEEGGG
T ss_pred             EeCCCC-ccCceECCCCCE-EEEeCCcCCcEEEEEeeh
Confidence            444433 478999999993 345677899999999854

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.41  E-value=0.086  Score=24.28  Aligned_cols=53  Identities=13%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEE-ecCC---C--cEEEEECCCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVIT-CGDD---K--TIKVWDATNG   63 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~~---~--~i~~w~~~~~   63 (65)
                      ++.|.++|+.++...    .+..+.+.....+|+|+++  .|+- ...+   .  .+.+.+..++
T Consensus        20 ~~dl~~~d~~~g~~~----~Lt~~~~~~~~p~~SPDG~--~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          20 CDDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             TTEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CCcEEEEECCCCCEE----EEecCCCcccCEEECCCCC--EEEEEEeeCCCCCceEEEEEEecCC
Confidence            345666788765432    3555556678899999999  5543 2222   2  3555565544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.23  Score=25.45  Aligned_cols=56  Identities=9%  Similarity=0.073  Sum_probs=34.4

Q ss_pred             ccCeEEEEECCCCceEeeeEEeec---ccccEeEEEecCCCCcEEEEEe---------cCCCcEEEEECCCCC
Q 039404            4 SRHIVQIYPCNGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLYVITC---------GDDKTIKVWDATNGV   64 (65)
Q Consensus         4 ~~~~i~i~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~---------~~~~~i~~w~~~~~~   64 (65)
                      .++.+.+|++.++....   .+..   ....+....++|++.  .++..         +..+.+.++|+.++.
T Consensus        35 ~~g~i~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~SpD~~--~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             SSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             CCCcEEEEECCCCCEEE---EEcCccccccccceeEECCCCC--eEEEEEcccceeEeeccccEEEEEccCCc
Confidence            45678888887654322   1221   123466788999998  55543         234677888887663

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=91.36  E-value=0.15  Score=26.37  Aligned_cols=61  Identities=8%  Similarity=-0.037  Sum_probs=36.7

Q ss_pred             ccccCeEEEEECCCCceEeeeEEee---------------------------cccccEeEEEecCCCCcEEEE-EecCCC
Q 039404            2 AYSRHIVQIYPCNGGDEVRQHLEID---------------------------AHVGGVNDIAFSHPNKQLYVI-TCGDDK   53 (65)
Q Consensus         2 ~~~~~~i~i~~~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~~~l~-s~~~~~   53 (65)
                      ++.+|.|.+|++.++.....+..+.                           .|.-........|+++  +++ +...+.
T Consensus        17 gg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr--~lfV~d~~~~   94 (441)
T d1qnia2          17 GGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGK--YLFINDKANT   94 (441)
T ss_dssp             CBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEE--EEEEEETTTT
T ss_pred             CCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCC--EEEEEcCCCC
Confidence            4678999999998765443222111                           0111122334467888  554 445778


Q ss_pred             cEEEEECCCCC
Q 039404           54 TIKVWDATNGV   64 (65)
Q Consensus        54 ~i~~w~~~~~~   64 (65)
                      .|.++|+.+.+
T Consensus        95 rVavIDl~t~k  105 (441)
T d1qnia2          95 RVARIRLDIMK  105 (441)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            99999988753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=90.97  E-value=0.41  Score=23.12  Aligned_cols=52  Identities=12%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      .+.|.+||...+....   .+........+++|.+++.. ++++.+.++.|.-.+.
T Consensus       246 ~g~I~~~dp~~g~~~~---~i~~p~~~~t~~afg~d~~~-lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         246 SSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKT-IFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSE-EEEEETTTTEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEE---EEECCCCCEEEEEEeCCCCE-EEEEECCCCcEEEEEC
Confidence            3556677665433221   23333456688999998874 5566667787777665

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.74  E-value=0.75  Score=24.23  Aligned_cols=53  Identities=11%  Similarity=0.051  Sum_probs=31.6

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.+.-+|+.+++..-.. ....   +...=.....+.  +++.++.|+.++.+|.++|+
T Consensus       457 G~l~AiD~~tGk~~W~~-~~~~---p~~gg~lstagg--lVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSV-EHVS---PWNGGTLTTAGN--VVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEEEETTTTEEEEEE-EESS---SCCCCEEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeCCCCCceEeee-cCCC---CCCCceEEEcCC--EEEEECCCCeEEEEECCCCc
Confidence            45667788777643311 1111   111111122466  78888999999999999986

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=89.67  E-value=0.59  Score=22.96  Aligned_cols=34  Identities=6%  Similarity=-0.106  Sum_probs=25.5

Q ss_pred             cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404           29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG   63 (65)
Q Consensus        29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~   63 (65)
                      ....+.+.|+|+++. ..++...++.|.+|++..+
T Consensus       192 g~gPr~i~f~pdg~~-~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         192 GDHPRWVAMHPTGNY-LYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             TCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTT
T ss_pred             CCceEEEEECCCCce-EEEeccCCCEEEEEEecCC
Confidence            345688999999993 3455667889999987543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.46  E-value=0.57  Score=24.91  Aligned_cols=53  Identities=17%  Similarity=0.104  Sum_probs=31.2

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.|.-||..+++..-... .   ..+...=.++..+.  +++.+..|+.++.+|-++|+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~---~~~~~gg~lsTagg--lVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-E---RFAVWGGTMATAGD--LVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-E---SSCCCSBCEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             ceEEEEeCCCCceecccC-C---CCCCccceeEecCC--EEEEECCCCeEEEEECCCCc
Confidence            467777877765332111 1   11111111122455  77788999999999999986

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.20  E-value=0.62  Score=22.54  Aligned_cols=54  Identities=17%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC-CcEEEEECCCC
Q 039404            8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD-KTIKVWDATNG   63 (65)
Q Consensus         8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-~~i~~w~~~~~   63 (65)
                      +.+||..++...........+........+.+++.  +++.++.+ ..+.+||..+.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCc--EEEeecCCCcceeEecCccC
Confidence            55788776542221111112222234567778888  77776544 57888887653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=88.86  E-value=0.62  Score=22.10  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             cccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404           27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA   60 (65)
Q Consensus        27 ~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~   60 (65)
                      .....+.+++|.+++.  ++++...++.+..++.
T Consensus        65 ~~~~~~~gla~~~dG~--l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSL   96 (302)
T ss_dssp             ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEE
T ss_pred             cCCCCcceEEEcCCCC--eEEEecCCceEEEEEe
Confidence            3445678999999998  7777666666666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.65  Score=21.19  Aligned_cols=36  Identities=8%  Similarity=0.068  Sum_probs=22.8

Q ss_pred             eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEE
Q 039404            7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVIT   48 (65)
Q Consensus         7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   48 (65)
                      .|.+.|........    +......+..-+|+|+++  .|+-
T Consensus        20 ~l~i~d~dG~~~~~----l~~~~~~~~sP~wSPDGk--~IAf   55 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV----VHRSPQPLMSPAWSPDGS--KLAY   55 (269)
T ss_dssp             EEEEEETTSCSCEE----EEEESSCEEEEEECTTSS--EEEE
T ss_pred             EEEEEcCCCCCcEE----EecCCCceeeeEECCCCC--EEEE
Confidence            47777876433222    333456677889999999  5543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.59  E-value=0.86  Score=24.05  Aligned_cols=53  Identities=19%  Similarity=0.162  Sum_probs=31.0

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.+.-+|+.+++..-.. ...   .+...-.....+.  +++.++.|+.++.+|-++|+
T Consensus       466 G~l~AiD~~TG~i~W~~-~~~---~p~~~g~lstagg--lVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEH-KEH---LPLWAGVLATAGN--LVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEEEECTTTCCEEEEE-EES---SCCCSCCEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             CeEEEEcCCCCcEEeec-CCC---CCCccceeEEcCC--eEEEeCCCCeEEEEECCCCc
Confidence            45666777776533211 111   1111111223455  77788999999999999986

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.41  E-value=1.1  Score=23.48  Aligned_cols=53  Identities=11%  Similarity=0.117  Sum_probs=32.4

Q ss_pred             CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404            6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus         6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +.+.-+|+.+++..-. ..+..+.   ..-.+...+.  +++.++.|+.++.+|.++|+
T Consensus       438 G~l~A~D~~tGk~~W~-~~~~~~~---~gg~l~Tagg--lVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWK-VPYPTHW---NGGTLSTAGN--LVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             EEEEEEETTTTEEEEE-EEESSSC---CCCEEEETTT--EEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEeCCCCeEeee-ccCCCCC---CCceeEECCC--EEEEECCCCcEEEEECCCCc
Confidence            5677788888763331 1222221   1111122455  77788999999999999986

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.05  E-value=0.82  Score=24.14  Aligned_cols=20  Identities=25%  Similarity=0.232  Sum_probs=17.8

Q ss_pred             EEEEecCCCcEEEEECCCCC
Q 039404           45 YVITCGDDKTIKVWDATNGV   64 (65)
Q Consensus        45 ~l~s~~~~~~i~~w~~~~~~   64 (65)
                      +++.++.|+.++.+|.++|+
T Consensus       477 lVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCC
T ss_pred             EEEEECCCCeEEEEECCCCc
Confidence            67788999999999999886

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.38  E-value=0.74  Score=23.57  Aligned_cols=54  Identities=7%  Similarity=-0.033  Sum_probs=28.4

Q ss_pred             cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404            5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN   62 (65)
Q Consensus         5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~   62 (65)
                      .+.+.+||+.++.... +.........+....|+|++.  .++-.. ++.+.+.+...
T Consensus        90 ~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~--~iafv~-~~nl~~~~~~~  143 (465)
T d1xfda1          90 TGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQ--QLIFIF-ENNIYYCAHVG  143 (465)
T ss_dssp             CSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTT--CEEEEE-TTEEEEESSSS
T ss_pred             cccEEEEEccCCceee-ccCccCCccccceeeeccCCc--eEEEEe-cceEEEEecCC
Confidence            3456677877654221 111112233455688999998  444332 44565555543