Citrus Sinensis ID: 039446

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
PNHSSVSASNIITSLHLNKQMGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRDPDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFDEY
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccEEEEccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHccccHccc
Coil and Loop (DISEMBL)
PNHSSVSASNIITSLHLNKQMGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAgfsqsrrslsfndrlglqycivdrdpdegssvRVLQRTkscaydgdddiDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFDEY
Flexible Loop (DISEMBL)
PNHSSVSASNIITSLHLNKQMGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGfsqsrrslsfndRLGLQYCIvdrdpdegssvrvlqrtkscaydgdddidRRAEIFITnfrrqllyerqvslelryrrgnsfdey
Low Complexity Region (SEG)
PNHSSVSASNIITSLHLNKQMGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRDPDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFDEY
Disordered region (IsUnstruct)
*********************************LKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRD******VRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRY*********
Disordered Region (DISOPRED)
**********IIT********************LKKAVKKLHMILSRIKLSKWNL********************************************************RRAEIFITNFRRQLLYERQVSLELRYRRG******
Disordered Region (DISEMBL)
*********NIITSLHLN***********MQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRDPDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFDEY
Disordered Region (DISPRO)
*****VSASNIITSLHLNKQMGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQYCIV**********RVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PNHSSVSASNIITSLHLNKQMGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRDPDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFDEY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
255548568	126	conserved hypothetical protein [Ricinus	0.821	0.952	0.568	3e-25
356562451	134	PREDICTED: uncharacterized protein LOC10	0.815	0.888	0.484	4e-21
225446076	128	PREDICTED: uncharacterized protein LOC10	0.815	0.929	0.472	8e-19
356547332	132	PREDICTED: uncharacterized protein LOC10	0.719	0.795	0.508	2e-18
357479721	132	hypothetical protein MTR_4g128470 [Medic	0.773	0.856	0.495	7e-18
388514623	132	unknown [Medicago truncatula]	0.698	0.772	0.523	2e-17
359485093	128	PREDICTED: uncharacterized protein LOC10	0.815	0.929	0.464	3e-17
224121176	128	predicted protein [Populus trichocarpa]	0.815	0.929	0.515	3e-17
297796651	130	hypothetical protein ARALYDRAFT_918928 [	0.828	0.930	0.455	2e-16
255646825	132	unknown [Glycine max]	0.719	0.795	0.491	7e-16

>gi|255548568|ref|XP_002515340.1| conserved hypothetical protein [Ricinus communis] gi|223545284|gb|EEF46789.1| conserved hypothetical protein [Ricinus communis]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 85/125 (68%), Gaps = 5/125 (4%)

Query: 21  MGKH-QSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSL-SFNDRLGL 78
           MG+  Q    + GHLKKAVKKL+ +L R  L  W +ASI R    + +  L SFNDRLGL
Sbjct: 1   MGRQRQQNWTVLGHLKKAVKKLNFLL-RFNLRGWRIASIVRNVSKRPQLRLKSFNDRLGL 59

Query: 79  QYCIVDRDPDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYR 138
             CI D + D    V+ LQRT+S  Y  D+DID+RAEIFI NFRRQLL ERQVSL++RY 
Sbjct: 60  HGCIEDLESDRSEMVKTLQRTRS--YASDEDIDQRAEIFIANFRRQLLLERQVSLQVRYY 117

Query: 139 RGNSF 143
           RGNSF
Sbjct: 118 RGNSF 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562451|ref|XP_003549485.1| PREDICTED: uncharacterized protein LOC100798434 [Glycine max]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 80/128 (62%), Gaps = 9/128 (7%)

Query: 23  KHQSRSLMQGHLKKAVKKLHMILSRIKLS-KWNLASICRAGFSQSRRSLSFNDRLGLQYC 81
           K Q +S +   L+ AVKK+ ++LS   LS  W+ A+I R G S S+R +SFNDR GL  C
Sbjct: 6   KMQKKSFLLSRLRVAVKKMKLLLSATVLSHAWHAATILR-GVSMSKRQISFNDRPGLMMC 64

Query: 82  IVDRDPDEGSSV-----RVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELR 136
               D  +   +       LQRT SC    DDDID+RAE+FI+NFRRQL  ERQ+SL+LR
Sbjct: 65  TASSDETDSEGLVSPAHHSLQRTISCP--SDDDIDKRAEMFISNFRRQLNMERQISLQLR 122

Query: 137 YRRGNSFD 144
           Y   NSF+
Sbjct: 123 YCSQNSFE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446076|ref|XP_002272519.1| PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 84/125 (67%), Gaps = 6/125 (4%)

Query: 21  MGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQY 80
           M K  ++S +   L++AVKK+  +L+   + +W++AS+ R   S++RR  SFNDR GL+ 
Sbjct: 3   MPKRNNKSSLLSRLRRAVKKVGFLLN-FGIHRWHVASMLRTS-SETRR-FSFNDRPGLRG 59

Query: 81  CIVDRD-PDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRR 139
           C  D D  D+  S R +QRT S   +  +D+D+RAE+FI NF RQL  ERQVSLELRY +
Sbjct: 60  CTEDTDSEDQPGSSRGIQRTISGPCE--EDVDKRAEVFIANFYRQLQMERQVSLELRYCK 117

Query: 140 GNSFD 144
           GNSF+
Sbjct: 118 GNSFE 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547332|ref|XP_003542068.1| PREDICTED: uncharacterized protein LOC100814899 [Glycine max]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 72/112 (64%), Gaps = 7/112 (6%)

Query: 37  AVKKLHMILSRIKLS-KWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRDPDEG---SS 92
           AV+K+ ++L+   LS  W+ A+I R G S S+R +SFNDR GL  C    + D     S 
Sbjct: 20  AVQKVKLLLNATVLSHAWHAATILR-GVSLSKRQISFNDRPGLMMCTASDETDSEDLVSP 78

Query: 93  VRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFD 144
              LQRT SC    DDDID+RAE+FI NFRRQL  ERQ+SL+LRY R NS +
Sbjct: 79  AHSLQRTISCP--SDDDIDKRAEMFINNFRRQLKMERQISLQLRYCRENSLE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479721|ref|XP_003610146.1| hypothetical protein MTR_4g128470 [Medicago truncatula] gi|355511201|gb|AES92343.1| hypothetical protein MTR_4g128470 [Medicago truncatula]

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 77/119 (64%), Gaps = 6/119 (5%)

Query: 22  GKHQSRSLMQGHLKKAVKKLHMILSRIKLS-KWNLASICRAGFSQSRRSLSFNDRLGLQY 80
            + Q++SL+   L+ AV+K+ +++S   L+  WN A + R G S S R LSFNDR GL  
Sbjct: 5   NQKQNKSLL-SRLRTAVQKVKLLISSTILNHTWNAAKMLR-GASLSNRQLSFNDRPGLMM 62

Query: 81  CIVDRDPDEGS--SVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRY 137
           C  +    EGS      LQRT S   D +DDID+R+EIFI NFRRQLL ERQ+SL+LRY
Sbjct: 63  CSSEETDSEGSVSPSPCLQRTISFPSD-EDDIDKRSEIFIANFRRQLLLERQISLQLRY 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514623|gb|AFK45373.1| unknown [Medicago truncatula]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 5/107 (4%)

Query: 34  LKKAVKKLHMILSRIKLS-KWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRDPDEGS- 91
           L+ AV+K+ +++S   L+  WN A + R G S S R LSFNDR GL  C  +    EGS 
Sbjct: 16  LRTAVQKVKLLISSTILNHTWNAAKMLR-GASLSNRQLSFNDRPGLMMCSSEEPDSEGSV 74

Query: 92  -SVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRY 137
                LQRT S   D +DDID+R+EIFI NFRRQLL ERQ+SL+LRY
Sbjct: 75  SPSPCLQRTISFPSD-EDDIDKRSEIFIANFRRQLLLERQISLQLRY 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485093|ref|XP_003633214.1| PREDICTED: uncharacterized protein LOC100259802 [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 6/125 (4%)

Query: 21  MGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQY 80
           M K  ++S +   L++AVKK+  +L+   + +W++AS+ R   S   R  SFNDR GL+ 
Sbjct: 3   MPKRNNKSSLLSRLRRAVKKVGFLLN-FGIHRWHVASMLRT--SSDTRRFSFNDRPGLRG 59

Query: 81  CIVDRD-PDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRR 139
           C  D D  D+  S R +QRT S   +  +D+D+RAE FI NF RQL  ERQVSLELRY +
Sbjct: 60  CTEDTDSEDQPGSSRGIQRTISGPCE--EDVDKRAEDFIANFYRQLQMERQVSLELRYCK 117

Query: 140 GNSFD 144
           GNS D
Sbjct: 118 GNSSD 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121176|ref|XP_002330762.1| predicted protein [Populus trichocarpa] gi|224121184|ref|XP_002330764.1| predicted protein [Populus trichocarpa] gi|222872564|gb|EEF09695.1| predicted protein [Populus trichocarpa] gi|222872566|gb|EEF09697.1| predicted protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 81/128 (63%), Gaps = 9/128 (7%)

Query: 21  MGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRS---LSFNDRLG 77
           MGK +  +   G LK+AVKK++ +LS     KW LASI     S S R    LSFNDR+G
Sbjct: 1   MGKQRWSAF--GPLKRAVKKINFLLS-FNFRKWRLASILSIASSSSSRRTGRLSFNDRIG 57

Query: 78  LQYCIVDRDPD--EGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLEL 135
           L   I D + D  +   VR  +R +S     D+DID+RAEIFI NFR+QLL ERQVSL+L
Sbjct: 58  LHGAIEDVESDHQKYKPVRTFERVRSYG-SSDEDIDKRAEIFINNFRQQLLIERQVSLQL 116

Query: 136 RYRRGNSF 143
           RY RGNSF
Sbjct: 117 RYYRGNSF 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796651|ref|XP_002866210.1| hypothetical protein ARALYDRAFT_918928 [Arabidopsis lyrata subsp. lyrata] gi|297312045|gb|EFH42469.1| hypothetical protein ARALYDRAFT_918928 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 74/123 (60%), Gaps = 2/123 (1%)

Query: 21  MGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDRLGLQY 80
           M K + RSL+   L++AV K+  +LS    S W+L  +  +  S S   LSFNDR GL  
Sbjct: 1   MAKSKDRSLL-NRLRQAVNKVRFVLSFKINSLWDLVPMLGSSSSSSSLRLSFNDRPGLTA 59

Query: 81  CIVDRDPD-EGSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRR 139
              + +PD  GSS   L RT S     D+DID +AE+FI NF RQL  ERQ+SLEL+Y +
Sbjct: 60  AFAENEPDLNGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYFQ 119

Query: 140 GNS 142
           GN+
Sbjct: 120 GNN 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646825|gb|ACU23884.1| unknown [Glycine max]

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 70/112 (62%), Gaps = 7/112 (6%)

Query: 37  AVKKLHMILSRIKLS-KWNLASICRAGFSQSRRSLSFNDRLGLQYCIVDRDPDEGSSV-- 93
           AV+K+ ++L+   LS  W+ A+I   G S S+R +SFNDR GL       + D    V  
Sbjct: 20  AVQKVKLLLNATVLSHAWHAATIL-CGVSLSKRQISFNDRPGLMMRTASDETDSEDLVFP 78

Query: 94  -RVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFD 144
              LQRT SC    DDDID+RAE+FI NFRRQL  ERQ+SL+LRY R NS +
Sbjct: 79  AHSLQRTISCP--SDDDIDKRAEMFINNFRRQLKMERQISLQLRYCRENSLE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2174537	130	AT5G57510 "AT5G57510" [Arabido	0.821	0.923	0.451	5.1e-19

TAIR|locus:2174537 AT5G57510 "AT5G57510" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 56/124 (45%), Positives = 74/124 (59%)

Query:    21 MGKHQSRSLMQGHLKKAVKKLHMILSRIKL-SKWNLASICRAGFSQSRRSLSFNDRLGLQ 79
             M K +  SL+   L++AV K+  +LS  K+ S W L  +  +  S S   LSFNDR GL 
Sbjct:     1 MTKSKDGSLLN-RLRQAVNKVKFVLS-FKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLT 58

Query:    80 YCIVDRDPDE-GSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYR 138
                 + +PD  GSS   L RT S     D+DID +AE+FI NF RQL  ERQ+SLEL+Y 
Sbjct:    59 AAFTENEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYC 118

Query:   139 RGNS 142
             +GN+
Sbjct:   119 QGNN 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       146   0.00079  103 3  11 22  0.42    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  138 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.72u 0.17s 13.89t   Elapsed:  00:00:01
  Total cpu time:  13.72u 0.17s 13.89t   Elapsed:  00:00:01
  Start:  Sat May 11 02:01:30 2013   End:  Sat May 11 02:01:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0010200 "response to chitin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
pfam05553	38	pfam05553, DUF761, Cotton fibre expressed protein	1e-05

>gnl|CDD|218633 pfam05553, DUF761, Cotton fibre expressed protein

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 106 GDDDIDRRAEIFITNFRRQLLYERQVSLELRYRR 139
            DD++DRRAE FI  FR QL  +RQ SL+ RY+ 
Sbjct: 1   SDDEVDRRAEEFIARFREQLRLQRQESLK-RYQE 33

This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences, found in Arabidopsis thaliana, are uncharacterized. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PF05553	38	DUF761: Cotton fibre expressed protein; InterPro:	99.33

>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function

Probab=99.33  E-value=4.4e-13  Score=85.08  Aligned_cols=34  Identities=56%  Similarity=0.830  Sum_probs=30.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHhHhhhhccceeeecC
Q 039446          106 GDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRG  140 (146)
Q Consensus       106 ~d~dID~rAe~FIanFr~QlklqRQ~SLqLrY~~~  140 (146)
                      ++++||++||+||++||+||+||||.|+ .+|+++
T Consensus         1 ~~~evd~rAe~FI~~f~~qlrlqr~~S~-~ry~em   34 (38)
T PF05553_consen    1 SDDEVDRRAEEFIAKFREQLRLQRQESL-QRYQEM   34 (38)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3679999999999999999999999999 688764

Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00