Citrus Sinensis ID: 039448
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1276 | 2.2.26 [Sep-21-2011] | |||||||
| Q5ZKD5 | 1294 | RRP12-like protein OS=Gal | yes | no | 0.872 | 0.860 | 0.261 | 3e-98 | |
| Q5JTH9 | 1297 | RRP12-like protein OS=Hom | yes | no | 0.872 | 0.858 | 0.252 | 5e-84 | |
| Q6P5B0 | 1295 | RRP12-like protein OS=Mus | yes | no | 0.732 | 0.722 | 0.261 | 2e-79 | |
| Q12754 | 1228 | Ribosomal RNA-processing | yes | no | 0.590 | 0.613 | 0.269 | 8e-67 | |
| Q9C0X8 | 1163 | Putative ribosomal RNA-pr | yes | no | 0.480 | 0.527 | 0.278 | 9e-60 | |
| Q9VYA7 | 1384 | RRP12-like protein OS=Dro | yes | no | 0.668 | 0.616 | 0.198 | 4e-22 | |
| Q9Y824 | 1001 | Uncharacterized protein C | no | no | 0.156 | 0.199 | 0.244 | 3e-10 |
| >sp|Q5ZKD5|RRP12_CHICK RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 360 bits (925), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 338/1292 (26%), Positives = 588/1292 (45%), Gaps = 179/1292 (13%)
Query: 3 AFEMEDGTAFS-IGNDVDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPIS 61
A E GT S + + ++ S + RF S H+ +CA + A++ ++ Q T
Sbjct: 89 ATERSSGTFLSGLSDCTNVTFSRVQRFWESNSAAHKEICAVLAAVTDVIRSQGGKETETE 148
Query: 62 YFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVV- 120
YF A ++L+ + SP+ + +++ +L+L+L ++ VL KK + + ++
Sbjct: 149 YFAALMTTLE-AVDSPES------VAAVAYLLNLVLKRVPSPVLIKKFSDASKAFMNIIS 201
Query: 121 -RLSSVTAGAVASGLTSLSRLLTGRGRVNWSD--VSQLYGVVLAFMTDSRLKVRRQSHLC 177
+ S + A+ L+ L+ LL + WS Q+Y +L+F ++ KVR+ +
Sbjct: 202 SQACSGSTSALRWVLSCLATLLRKQDLAAWSYPVTLQVYHGLLSFCVHTKPKVRKAAQHG 261
Query: 178 VREILLSLQGTLVL----APASEAITNMFEKFLLL----AGGSNTSADEKPKGAQEVLYV 229
V +L +G+ + AP KF + AGG+ K A L+V
Sbjct: 262 VCSVL---RGSEFMFGDEAPEHHPAAPSSAKFCVQEIEKAGGT--------KEATTTLHV 310
Query: 230 LDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALN-VICLHP-TLEVSAEAL 287
L L++ LP + ++ L LVT A + + P T + AE
Sbjct: 311 LALLRDLLPCFPAAVLKTCCETLLRVMTLSHVLVTACAMQAFHSLFSAQPRTSCLPAELN 370
Query: 288 LDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILAS 347
++ +L V + +T+ + + + + +++C LP +F+A + S
Sbjct: 371 AQIITALYDYVPSANDLQPLLTWLT-TMERAHVNLGRLQKDLCWAHLPRLFSATMNCFLS 429
Query: 348 EHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLD 407
H + + AA + L+ L+N CI + D++ NV++ G + + K+ +VE L
Sbjct: 430 PHLQVVAAAAQTLETLLNECIAPHM-----DELGNVSASTPAPG-SYLCKMFRSVEEGLT 483
Query: 408 YHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSA 467
Y + A WD Q++ F+ G MR L++L D++ P FPY ++ + VG+A
Sbjct: 484 YRFHAAWDGVLQVLEVFFEVCGKQCHPIMRKCLQSLCDLRLSPH--FPYTTEVDQAVGAA 541
Query: 468 VGSMGPETFLCLLPLKLEASD--LSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQ 525
VG+MGPE L +PL+++ + L WL P+L+ Y+ GARL FF L +A +
Sbjct: 542 VGAMGPEVLLEAVPLQIDGKEETLDFPRSWLLPVLRDYVQGARLGFFTSYFLPLAATLKS 601
Query: 526 KSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHEENDIR 585
++ +F G+ S+ D L + +W+LLP FC P D E+F LA L A+ E D+R
Sbjct: 602 RALEFAQAGKSLESKIYDTLQWQVWTLLPGFCTRPTDVVEAFKGLARTLGMAISERPDLR 661
Query: 586 GIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELL 645
+C +L+ LI T ++RA + A+ L
Sbjct: 662 PTVCQALRTLIHHG--------------CGTDAERAE--------------VGRFAKNFL 693
Query: 646 SILSRIFLESAKDEGGCLQ-----STIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKT 700
IL ++ + +D G Q T+ + +I D ++ ++ +L
Sbjct: 694 PILFNVYSQPEEDGGSSSQRRSVLDTVRAYLTITDPQLGCGFLQKASEKL---------- 743
Query: 701 KSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGL 760
+S ESS +F R + DL +++ P N + + L+ I+P+LQ +
Sbjct: 744 -------------TSPESS-EFARLSILDLVVAMSPYANEQALGSLYRTIQPSLQSKDHS 789
Query: 761 IQKKAYKVLSTIL----RKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAH 816
+QKKAY+VL + C F+ S LEEL ++++ L S AKR RL CL+ I+
Sbjct: 790 MQKKAYRVLEEVCAAPHAPCQAFVHSHLEELQAVLLDSLKSAASPAKRPRLKCLFHIMKQ 849
Query: 817 VSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY 876
+S + +++ + E+IL KE + R A+ +LV++G AF +E +
Sbjct: 850 LSAEHEP-----FVTALVPEVILCTKEVSVGARKNAFMLLVEMGHAF-IRFGPTPQEAME 903
Query: 877 QFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDL--VSNVYKLLPSTFLLLQRKNREII 934
+F +V GL G S MIS V L RL +EF D ++ V +LL + LLL + R+++
Sbjct: 904 RFLLLVYAGLTG-SVTMISCTVLALTRLFFEFRDHMELNVVEQLLQNICLLLGSRTRDVV 962
Query: 935 KANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDA 994
KA LG +KV++ L H+ +M+E + DD + F+ K++ L ++K G +
Sbjct: 963 KAALGFIKVVLLLVDTTLLAKHVQTMLEAVGSLSDDMRRHFRMKLRNLFTKFIRKFGFEL 1022
Query: 995 VKAVMPEEHMKLLKNIRKIKERKERKLATKTEDTKSHFSKTTTSRLSRWNHTKIFSDFGD 1054
V+ ++P E K+L NIRK + R ++ A + ++ + GD
Sbjct: 1023 VQGLLPAEFHKVLVNIRKAEARSRKQRALRQAAAEAEEEEAPA------------QPKGD 1070
Query: 1055 EGSEGSDAEYMDVGTVSGQGSKASPQLKSKVSTLRLKKKRKADKILPEDLFDQLEDEPLD 1114
E ++ + + + + +R K+ R+ + L + EDEPL+
Sbjct: 1071 SMEE----------ILADSEEEEEEEEERRRGKVRKKQARQKGQAW---LKEGEEDEPLN 1117
Query: 1115 LLDRQKTRSALRSSEHLKQKTESDDEPEIDSEGRLIIH------EGRKPKKVKPSNPDLD 1168
LD ++ L + LK+ + ++ +GRLIIH + + K V+ D+
Sbjct: 1118 FLDPNVSQRVLATEPSLKKSRGVKHDFQVSEDGRLIIHDEEEEVDNDEAKGVEEEVADV- 1176
Query: 1169 GRSEAGSMMSRPSSRKTQKRR-------KTSESGWAYT-------------------GSE 1202
E G S+K+QKRR E+G Y+ G+E
Sbjct: 1177 -LQEVGL-----RSKKSQKRRFREEPDDDEPETG-TYSQYRAGGSGIHRPLDKKPAFGAE 1229
Query: 1203 YASKKASGDVKRKGKLEPYAYWPMDRKLMSRR 1234
Y SKK GDVK+KG+L+PYAY P++R +++R
Sbjct: 1230 YRSKKGKGDVKKKGQLDPYAYIPLNRAKLNKR 1261
|
Gallus gallus (taxid: 9031) |
| >sp|Q5JTH9|RRP12_HUMAN RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q6P5B0|RRP12_MOUSE RRP12-like protein OS=Mus musculus GN=Rrp12 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q12754|RRP12_YEAST Ribosomal RNA-processing protein 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP12 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9C0X8|RRP12_SCHPO Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB8E5.07c PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9VYA7|RRP12_DROME RRP12-like protein OS=Drosophila melanogaster GN=CG2691 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q9Y824|YON1_SCHPO Uncharacterized protein C1105.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1105.01 PE=1 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1276 | ||||||
| 359486189 | 1439 | PREDICTED: RRP12-like protein-like [Viti | 0.963 | 0.854 | 0.706 | 0.0 | |
| 255550353 | 1233 | conserved hypothetical protein [Ricinus | 0.958 | 0.991 | 0.699 | 0.0 | |
| 297739419 | 1230 | unnamed protein product [Vitis vinifera] | 0.941 | 0.976 | 0.711 | 0.0 | |
| 449493610 | 1265 | PREDICTED: LOW QUALITY PROTEIN: RRP12-li | 0.974 | 0.982 | 0.644 | 0.0 | |
| 449452769 | 1264 | PREDICTED: RRP12-like protein-like [Cucu | 0.973 | 0.982 | 0.642 | 0.0 | |
| 356545786 | 1274 | PREDICTED: RRP12-like protein-like [Glyc | 0.981 | 0.982 | 0.634 | 0.0 | |
| 224069212 | 1029 | predicted protein [Populus trichocarpa] | 0.804 | 0.998 | 0.747 | 0.0 | |
| 357440873 | 1328 | RRP12-like protein [Medicago truncatula] | 0.987 | 0.948 | 0.611 | 0.0 | |
| 42571047 | 1280 | NUC173 domain-containing protein [Arabid | 0.969 | 0.966 | 0.577 | 0.0 | |
| 297823219 | 2264 | hypothetical protein ARALYDRAFT_321151 [ | 0.883 | 0.497 | 0.565 | 0.0 |
| >gi|359486189|ref|XP_002267256.2| PREDICTED: RRP12-like protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1781 bits (4613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1242 (70%), Positives = 1026/1242 (82%), Gaps = 12/1242 (0%)
Query: 16 NDVDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISYFGATCSSLDRLLS 75
++ D C SILSRFS+S QEEHQHLC +G MSQELKDQNL TP++YFG TCSSLDRL
Sbjct: 181 DETDFCGSILSRFSNSTQEEHQHLCTVLGTMSQELKDQNLSTTPVTYFGVTCSSLDRL-- 238
Query: 76 SPDPDRSSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLT 135
S DPD +H I SL TILS++LP+IS A+LKKK +FL++L+VRV+R S A ASGL
Sbjct: 239 SSDPDSPTHSIDSLLTILSMVLPRISPAILKKKREFLSELLVRVLRSKSPPA---ASGLK 295
Query: 136 SLSRLLTGRGRVNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPAS 195
+S LL R NWSDVSQLYGV+L F+TDS KVRRQSH+C+ + L S QG+ LAPAS
Sbjct: 296 CISHLLMIRESDNWSDVSQLYGVLLRFITDSHSKVRRQSHVCIHDTLQSFQGSSALAPAS 355
Query: 196 EAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTL 255
E ITN+FE++LLLAGGSN +A E+PKGAQEV+Y+LDALK+CLPLMS K+T +LKY KTL
Sbjct: 356 EGITNIFERYLLLAGGSNAAASERPKGAQEVIYILDALKDCLPLMSMKFTTTVLKYLKTL 415
Query: 256 LELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLL 315
LEL QPLVTRR+ D+LN +C+HPT EVS E LL+L+CSLALSVS NE + D +TFT RLL
Sbjct: 416 LELHQPLVTRRIMDSLNAVCVHPTSEVSPEVLLELICSLALSVSGNERTVDDITFTTRLL 475
Query: 316 NVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQ 375
+VGM K++S++R+IC KLP++FNAL+D+LASEHEEA+ AATEALK+LI+ACID SLIKQ
Sbjct: 476 DVGMRKVHSLDRKICIVKLPVIFNALRDVLASEHEEALHAATEALKSLIHACIDVSLIKQ 535
Query: 376 GVDQIT-NVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSY 434
GV+QIT N + + R+SGPT+IEK+CAT++SLLDY YS VWDM+FQ++STMF+KLG SSY
Sbjct: 536 GVNQITMNADMETRRSGPTIIEKLCATIKSLLDYRYSTVWDMSFQVISTMFNKLGENSSY 595
Query: 435 FMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNV 494
+ G LK LAD+Q LPDED YRKQLHECVGSA+ +MGPE FL +LPLKLE D +E NV
Sbjct: 596 LLMGTLKALADIQKLPDEDLIYRKQLHECVGSALVAMGPEIFLSILPLKLEVEDQAEANV 655
Query: 495 WLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLP 554
W+ P+LKQY +GA L+FF +L + +L+ QKS+ +LEGR+ SSRS DALVYSLWSLLP
Sbjct: 656 WVLPVLKQYTVGAHLSFFRGSILNIVRLMKQKSRMLDLEGRIVSSRSCDALVYSLWSLLP 715
Query: 555 SFCNYPVDTAESFMDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVI 614
SFCNYP+DTAESF DL LC+AL EE ++ GIICSSLQ LIQQNK+ LEGK DL
Sbjct: 716 SFCNYPLDTAESFKDLEKELCTALCEEPNVCGIICSSLQILIQQNKRILEGKIDLHGSDA 775
Query: 615 STASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIA 674
ST+ QRAMAHYT + A DNLN LKSSARE LS+LS FL+SA+D GGCLQSTI + ASIA
Sbjct: 776 STSRQRAMAHYTPQAAADNLNALKSSAREFLSVLSGNFLKSAQD-GGCLQSTICELASIA 834
Query: 675 DKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSL 734
DKEIVTR F+ TM +LL+ TQEAG +++R SN+M+ID+SSN SS +RA+LFDLA+SL
Sbjct: 835 DKEIVTRFFRNTMQKLLKVTQEAGNAETSRNSNTMEIDNSSNGSSLALVRAQLFDLAVSL 894
Query: 735 LPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEV 794
LPGLNAKEID+LFVA KPAL+DDEGLIQKKAYKVLS ILR CD FLS++ EELL LMIEV
Sbjct: 895 LPGLNAKEIDLLFVATKPALRDDEGLIQKKAYKVLSIILRNCDTFLSAKFEELLKLMIEV 954
Query: 795 LPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYD 854
LPSCHFSAK HRL+CLY +I H SK +SE +R I+SSFLTEIILALKEANK+TRNRAYD
Sbjct: 955 LPSCHFSAKHHRLECLYSLIVHASKCESE-KRCDIISSFLTEIILALKEANKKTRNRAYD 1013
Query: 855 VLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSN 914
+LVQIG A DEE GG KENL+QFFNMVA GLAGE+PHMISAAVKGLARLAYEFSDLV+
Sbjct: 1014 MLVQIGHACRDEEKGGKKENLHQFFNMVAAGLAGETPHMISAAVKGLARLAYEFSDLVAT 1073
Query: 915 VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQ 974
Y +LPSTFLLL+RKNREI KANLGLLKVLVAKS EGLQ+HL SMVEGLL WQD TKNQ
Sbjct: 1074 AYNVLPSTFLLLKRKNREIAKANLGLLKVLVAKSQTEGLQMHLRSMVEGLLNWQDITKNQ 1133
Query: 975 FKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLKNIRKIKERKERKLATKTEDTKSHFSK 1034
FK+K+KLLLEMLVKKCGLDAVKAVMPEEHMKLL NIRKIKERKERKL +E+ +S SK
Sbjct: 1134 FKAKVKLLLEMLVKKCGLDAVKAVMPEEHMKLLTNIRKIKERKERKLEANSEEIRSQQSK 1193
Query: 1035 TTTSRLSRWNHTKIFSDFGDEGSEGSDAEYMDVGTVSGQGSKASPQLKSKVSTLRLKKKR 1094
TTSRLSRWNHTKIFS+FGD SEGSDAEY D T+ GQ SKA+ SK S+ R +
Sbjct: 1194 ATTSRLSRWNHTKIFSNFGDGESEGSDAEYTDDQTLFGQQSKATLYYNSKASSSRSVTAK 1253
Query: 1095 KADKILPEDLFDQLEDEPLDLLDRQKTRSALRSSEHLKQKTESDDEPEIDSEGRLIIHEG 1154
+ LPEDLFDQLEDEPLDLLD+ KTRSALRS+ HLK+K +DEPE+DSEGRLII EG
Sbjct: 1254 R----LPEDLFDQLEDEPLDLLDQHKTRSALRSTGHLKRKPGLEDEPEVDSEGRLIIREG 1309
Query: 1155 RKPKKVKPSNPDLDGRSEAGSMMSRPSSRKTQKRRKTSESGWAYTGSEYASKKASGDVKR 1214
KP++ PSNPD D RS+A S MS S+R +KRRKTS+SGWAYTG EYASKKA+GDVKR
Sbjct: 1310 GKPRREMPSNPDSDVRSQASSHMSMNSARDNRKRRKTSDSGWAYTGGEYASKKAAGDVKR 1369
Query: 1215 KGKLEPYAYWPMDRKLMSRRPEHRAAARKGMASVVKLTKKLE 1256
K KLEPYAYWP+DRK+MSRRPEHRAAARKGMASVVKLTKKLE
Sbjct: 1370 KDKLEPYAYWPLDRKMMSRRPEHRAAARKGMASVVKLTKKLE 1411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550353|ref|XP_002516227.1| conserved hypothetical protein [Ricinus communis] gi|223544713|gb|EEF46229.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|297739419|emb|CBI29601.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449493610|ref|XP_004159374.1| PREDICTED: LOW QUALITY PROTEIN: RRP12-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449452769|ref|XP_004144131.1| PREDICTED: RRP12-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356545786|ref|XP_003541316.1| PREDICTED: RRP12-like protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224069212|ref|XP_002326302.1| predicted protein [Populus trichocarpa] gi|222833495|gb|EEE71972.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|357440873|ref|XP_003590714.1| RRP12-like protein [Medicago truncatula] gi|355479762|gb|AES60965.1| RRP12-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|42571047|ref|NP_973597.1| NUC173 domain-containing protein [Arabidopsis thaliana] gi|330253869|gb|AEC08963.1| NUC173 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297823219|ref|XP_002879492.1| hypothetical protein ARALYDRAFT_321151 [Arabidopsis lyrata subsp. lyrata] gi|297325331|gb|EFH55751.1| hypothetical protein ARALYDRAFT_321151 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1276 | ||||||
| TAIR|locus:1006230010 | 1280 | AT2G34357 [Arabidopsis thalian | 0.868 | 0.865 | 0.577 | 0.0 | |
| TAIR|locus:2117914 | 1131 | AT4G23540 [Arabidopsis thalian | 0.657 | 0.741 | 0.285 | 4.9e-100 | |
| UNIPROTKB|Q5ZKD5 | 1294 | RRP12 "RRP12-like protein" [Ga | 0.338 | 0.333 | 0.268 | 3.8e-79 | |
| UNIPROTKB|Q5JTH9 | 1297 | RRP12 "RRP12-like protein" [Ho | 0.336 | 0.331 | 0.263 | 9.3e-75 | |
| ZFIN|ZDB-GENE-050706-182 | 1283 | rrp12 "ribosomal RNA processin | 0.402 | 0.400 | 0.279 | 3.3e-74 | |
| MGI|MGI:2147437 | 1295 | Rrp12 "ribosomal RNA processin | 0.446 | 0.440 | 0.239 | 5.1e-74 | |
| DICTYBASE|DDB_G0280797 | 1427 | DDB_G0280797 "putative ribosom | 0.412 | 0.368 | 0.275 | 2.8e-63 | |
| CGD|CAL0001929 | 1217 | orf19.7011 [Candida albicans ( | 0.557 | 0.584 | 0.255 | 2.7e-59 | |
| UNIPROTKB|Q5AFQ7 | 1217 | CaO19.7011 "Putative uncharact | 0.557 | 0.584 | 0.255 | 2.7e-59 | |
| SGD|S000005933 | 1228 | RRP12 "Protein required for ex | 0.552 | 0.574 | 0.259 | 9e-54 |
| TAIR|locus:1006230010 AT2G34357 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3163 (1118.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 648/1123 (57%), Positives = 812/1123 (72%)
Query: 153 SQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGS 212
S Y ++L F+T S KVR+ + C+R++L GT S AIT MF+ +L LA S
Sbjct: 158 SDSYNILLNFVTHSDGKVRKLASSCLRDVLQKSHGTKAWQSVSGAITEMFQNYLDLAHKS 217
Query: 213 NTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALN 272
+ E +GA++VLY+L LKECL LMS K+ A +++ FK L+ LR P +TR V D+LN
Sbjct: 218 EVGSTEGARGAKQVLYILSTLKECLALMSKKHIATLIEGFKVLMILRDPYITRPVIDSLN 277
Query: 273 VICLHPTLEVXXXXXXXXXXXXXXXVSTNETSADAMTFTARLLNVGMIKIYSINREICST 332
+CL+PT EV S +ETSADAMTFTARLL VGM + +++NR++C
Sbjct: 278 AVCLNPTSEVPVEALLEVLSLAAGLFSGHETSADAMTFTARLLKVGMTRSFTLNRDLCVV 337
Query: 333 KLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGP 392
KLP VFN L DI+ASEHEEAIFAAT+ALK+LI +CIDESLI++GV++I N N + RK P
Sbjct: 338 KLPSVFNGLNDIIASEHEEAIFAATDALKSLIFSCIDESLIREGVNEIRNSNLNVRKPSP 397
Query: 393 TVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDE 452
TVIEK+CATVESLLDY Y AVWDMAFQ+VS MFDKLG +S+YFMR L+ L+DMQ+LPDE
Sbjct: 398 TVIEKLCATVESLLDYKYHAVWDMAFQVVSAMFDKLGEHSAYFMRNTLQGLSDMQDLPDE 457
Query: 453 DFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFPILKQYIIGARLNFF 512
FPYRKQLHECVGSA+G+MGPETFL ++ L LEA+DLSEV VWLFPILKQY +G RL+FF
Sbjct: 458 GFPYRKQLHECVGSALGAMGPETFLSIVRLNLEANDLSEVKVWLFPILKQYTVGGRLSFF 517
Query: 513 MEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAG 572
E + M + + K+QK +L+G +SRS D+LVYSLW+LLPSFCNYPVDT ESF DL
Sbjct: 518 TEAIFSMVETMSHKAQKLKLQGLPVASRSVDSLVYSLWALLPSFCNYPVDTVESFADLGR 577
Query: 573 VLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATD 632
+LC L + + GIIC+SL LIQQNK+ +EGK +N S A QRA A Y ++ A
Sbjct: 578 ILCGVLQTQAETHGIICASLNILIQQNKEVVEGKEVPTNDA-SPAMQRATARYDSQHAAA 636
Query: 633 NLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLE 692
NL VL+ A +LL +LSRIF E +KD+GG LQS IG+ ASIA+K+ V++L +T+ LLE
Sbjct: 637 NLKVLRLCAPKLLDVLSRIFHECSKDDGGSLQSAIGNLASIAEKKTVSKLLFKTLQELLE 696
Query: 693 ATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKP 752
AT+ A + S M +D++++++S +RARLFDL +SLLPGL+ +E+D +F ++KP
Sbjct: 697 ATKTAIAQDESPVSG-MDVDNTADKNSSSNLRARLFDLLVSLLPGLDGQEVDTIFSSLKP 755
Query: 753 ALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYF 812
A+QD +GLIQKKAYKVLS IL+ DGF+S LEELL LM + CH SAKRH+LDCLYF
Sbjct: 756 AMQDSKGLIQKKAYKVLSVILKSSDGFVSKNLEELLVLMHNI---CHVSAKRHKLDCLYF 812
Query: 813 IIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGK 872
++AH S+ D + R I+SSFL E+ILALKE NK+TRNRAYDVLVQIG A+ DEENGG
Sbjct: 813 LLAHASRTDDLKERKDIVSSFLPEVILALKEVNKKTRNRAYDVLVQIGHAYADEENGGDN 872
Query: 873 ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNRE 932
E L+ +F+MV G LAGE P MISAAVKG+ARL YEFSDL+S+ Y LLPSTFLLLQRKN+E
Sbjct: 873 EKLHGYFDMVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYNLLPSTFLLLQRKNKE 932
Query: 933 IIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGL 992
I KANLGLLKVLVAKS EGL +L SMVEGLLKW + TKN FK+K++LLLEML+KKCG
Sbjct: 933 ITKANLGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAKVRLLLEMLIKKCGT 992
Query: 993 DAVKAVMPEEHMXXXXXXXXXXXXXXXXXATKTEDTKSHFSKTTTSRLSRWNHTKIFSD- 1051
+AVK+VMPEEHM A ++ +KS SK T+S++SRWN TKIFSD
Sbjct: 993 EAVKSVMPEEHMKLLTNIRKIKERKEKKYAAGSDISKSQHSKDTSSKVSRWNDTKIFSDV 1052
Query: 1052 FGDEGSEGSDAEYMDVGTVSGQGSKASPQLKSKVSTLRLKKKRKADKIXXXXXXXXXXXX 1111
+ D SE SD + MD + G+ SKAS LKSK S LR KK R +
Sbjct: 1053 YAD--SEDSDGDDMDAES-HGR-SKASSLLKSKASALRSKKSRNQSHLEVDESDDEPLDL 1108
Query: 1112 XXXXXXRQKTRSALRSSEHLKQKTESDDEPEIDSEGRLIIHEGRKPKKVKPSNPDLDGRS 1171
+ KTR ALRSSE K+K +SD+E E D EGRL+I EG + K+ + S+ D D +S
Sbjct: 1109 MD----QHKTRLALRSSELRKRKADSDEEAEFDVEGRLVIREGERSKRKELSDADSDAKS 1164
Query: 1172 EAGSMMSRPSSRKTQKRRKTSESGWAYTGSEYASKKASGDVKRKGKLEPYAYWPMDRKLM 1231
GS S SS+K QKR KTSESG+AYTG EYASKKASGD+K+K KLEPYAYWP+DRK+M
Sbjct: 1165 SKGSRFSGNSSKKNQKRMKTSESGYAYTGKEYASKKASGDLKKKDKLEPYAYWPLDRKMM 1224
Query: 1232 SRRPEHRAAARKGMASVVKLTKKLEGKSASSALSM-KFTKSKK 1273
SRRPE RA A +GM+SVVK+ KK+EGKSA+ AL+ KF K K+
Sbjct: 1225 SRRPEQRAVAVRGMSSVVKMAKKMEGKSAAEALATTKFKKFKR 1267
|
|
| TAIR|locus:2117914 AT4G23540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZKD5 RRP12 "RRP12-like protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5JTH9 RRP12 "RRP12-like protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050706-182 rrp12 "ribosomal RNA processing 12 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2147437 Rrp12 "ribosomal RNA processing 12 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0280797 DDB_G0280797 "putative ribosomal RNA processing protein RRP19" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0001929 orf19.7011 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5AFQ7 CaO19.7011 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005933 RRP12 "Protein required for export of the ribosomal subunits" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1276 | |||
| pfam08161 | 197 | pfam08161, NUC173, NUC173 domain | 9e-67 |
| >gnl|CDD|219732 pfam08161, NUC173, NUC173 domain | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 9e-67
Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 4/200 (2%)
Query: 398 ICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYR 457
+ + VE LL Y A W ++S +FDKLG S+ + LK L D++ E FP+R
Sbjct: 1 LASIVEDLLSIKYQAAWKEVLNVLSALFDKLGERSNPLLLKVLKTLGDLRTN--ESFPFR 58
Query: 458 KQLHECVGSAVGSMGPETFLCLLPLKLE-ASDLSEVNVWLFPILKQYIIGARLNFFMEKL 516
K+L + +GSA+ +MGPE L +LPL LE + WL P+L+ I A L FF ++
Sbjct: 59 KELDQVIGSAISAMGPEVVLSILPLNLENPDSIQPGRAWLLPLLRDNIRNASLAFFKSEI 118
Query: 517 LGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCS 576
L +A+ + QK +K + + V S+ + LV +WSLLP FC+ P D ESF A L +
Sbjct: 119 LPLAEALEQKIKKAQAKKSV-ESKIFETLVDQIWSLLPGFCDLPKDLVESFDSFAETLGN 177
Query: 577 ALHEENDIRGIICSSLQNLI 596
L+E ++R IC +L+ L+
Sbjct: 178 LLYERVELRTTICQALRTLV 197
|
This is the central domain of of novel family of hypothetical nucleolar proteins. Length = 197 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1276 | |||
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 100.0 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.95 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.18 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.3 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.44 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.23 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.06 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.97 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.91 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.81 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.67 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.61 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.52 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.28 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.22 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 95.92 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.62 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 95.61 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 95.59 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.36 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.32 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 94.42 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.23 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.82 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 93.81 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 93.49 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 93.19 | |
| PF12726 | 727 | SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y | 91.93 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 91.8 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 90.82 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 90.71 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 90.55 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 89.92 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 89.63 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 89.2 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 89.0 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 88.92 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 88.59 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 88.33 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 88.33 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 87.71 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 86.98 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 85.58 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 85.27 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 85.22 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 85.1 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 85.04 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 84.55 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 84.36 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 84.08 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 83.62 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 82.61 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 82.4 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 82.3 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 81.81 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 80.91 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 80.25 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 80.07 |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-203 Score=1839.47 Aligned_cols=1105 Identities=29% Similarity=0.457 Sum_probs=960.0
Q ss_pred HHhhccCCCChHHhHHHHHHHHHHHHHHhhCCCCCChHhHHHHHHhhhhhhhCCCCCCCCchhHHHHHHHhhhhccCcCh
Q 039448 23 SILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISYFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISV 102 (1276)
Q Consensus 23 ~i~~r~~~S~~~~~k~~~avLaAv~e~i~~q~~~~t~t~YFaAlms~L~~~~~~~~~~~~~~~~~a~lyLL~lv~p~vP~ 102 (1276)
.++.++|.|++..||+++++|+||+|+|+ .|+||+++|+.++.++ .+|||.+++.+||+
T Consensus 26 ~~v~~~~es~sa~qke~~~~la~v~evir-------~veyf~~lmt~~e~~s--------------~~~LL~li~~~VPs 84 (1176)
T KOG1248|consen 26 DKVLRFWESSSAVQKEDGAVLAAVTEVIR-------DVEYFLALMTPIEGAS--------------SAYLLVLILKYVPS 84 (1176)
T ss_pred HHHHHHhhcchHHHHHhHHHHHHHHHHHH-------HhHHHHHhhhhhhhhh--------------HHHHHHHHHhhCCH
Confidence 34679999999999999999999999999 8999999999998743 19999999999999
Q ss_pred HHHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchhh--HHHHHHhhccCCchhHHHHHHHHHHH
Q 039448 103 AVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVSQ--LYGVVLAFMTDSRLKVRRQSHLCVRE 180 (1276)
Q Consensus 103 ~vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~--~~~~LL~f~~d~RPKVRK~Aq~av~~ 180 (1276)
+||++||++++++++|+++..+++.+++|++|+||+.||++||+++|+++++ .|+++|.|++|.+|||||+||++|+.
T Consensus 85 ~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~ 164 (1176)
T KOG1248|consen 85 PVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAA 164 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9999999999999999999989999999999999999999999999998765 99999999999999999999999999
Q ss_pred HHhccCCCC-CccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccC
Q 039448 181 ILLSLQGTL-VLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELR 259 (1276)
Q Consensus 181 IL~~~~~~p-~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~ 259 (1276)
||++|+..| +.|||+..||+||.+.++... +++++++++|.|.||++++++||...++++|+.|+..|+.+
T Consensus 165 VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~--------~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s 236 (1176)
T KOG1248|consen 165 VLKGPPFAPDAEHPASLSVAKFCLALIESKL--------GSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTES 236 (1176)
T ss_pred HHcCCCCCccccchHHHHHHHHHHHHHHhhh--------chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccc
Confidence 999988776 889999999999999996322 34589999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHH
Q 039448 260 QPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFN 339 (1276)
Q Consensus 260 n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~ 339 (1276)
+++++.+||||||+||..++..++++.++.+|.+|+.|.|+.+|+..+++|+ +||..||.+|+.+|++.|++++|++|+
T Consensus 237 ~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~-~v~~~~~~~la~~q~~~~~~~~~~~~~ 315 (1176)
T KOG1248|consen 237 PVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWL-KVLNEAHDILATLQEEKALQALPRLFS 315 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHH-HHHHHHHHHHHHhCHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999988888 699999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHH-HHhhhhcchhhhHHHHH
Q 039448 340 ALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICAT-VESLLDYHYSAVWDMAF 418 (1276)
Q Consensus 340 ~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~-~~~~L~~~y~~aw~~vL 418 (1276)
+++.+|+|+.++++.+|+||+++++.+||. +++.+|+. ++++|+|||+++|++||
T Consensus 316 ~~~t~~~s~~~e~~q~a~q~l~~il~~sv~------------------------~~~~~c~~~~~~~l~~kf~~~~~~il 371 (1176)
T KOG1248|consen 316 LFFTILESLIEELVQAASQSLKEILKESVT------------------------VIDALCSKQLHSLLDYKFHAVWRFIL 371 (1176)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcccCc------------------------ccHHHHHHHHHHHHcchHHHHHHHHH
Confidence 999999999999999999999999999996 13456665 89999999999999999
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccchhh
Q 039448 419 QIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFP 498 (1276)
Q Consensus 419 ~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaWLLP 498 (1276)
++++++|++||++++|+|.++|+.|++||. +++|+++.++|+|||+||+|||||.||+++|||+.+++.+++|+||||
T Consensus 372 qi~s~~fek~G~~s~~~l~~~L~~l~~lr~--~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLP 449 (1176)
T KOG1248|consen 372 QILSALFEKCGELSGPELTKTLEGLCDLRA--SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLP 449 (1176)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHhhc--CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHH
Confidence 999999999999999999999999999999 558999999999999999999999999999999988999999999999
Q ss_pred hhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcchhhhHHHHHHHHHHHh
Q 039448 499 ILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSAL 578 (1276)
Q Consensus 499 lLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L 578 (1276)
|||+|++|++|+||++||+|||+.|+.|+.++.+++.... +|+||++|||+||||||+||+|+.++|+++|++||.+|
T Consensus 450 vLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al 527 (1176)
T KOG1248|consen 450 VLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAAL 527 (1176)
T ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877665 99999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCcc
Q 039448 579 HEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKD 658 (1276)
Q Consensus 579 ~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~ 658 (1276)
..+|+||++||+||+.||++|. ++.+|.+|+++++++|+||||+|||+|++++++
T Consensus 528 ~~~~elr~~Ic~sL~~Lv~~n~-------------------------~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~ 582 (1176)
T KOG1248|consen 528 LKRPELRETICNSLRMLVEQNK-------------------------PSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAA 582 (1176)
T ss_pred hcchHhHHHHHHHHHHHHHcCC-------------------------CcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcc
Confidence 9999999999999999999984 223578899999999999999999999999988
Q ss_pred ccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCC
Q 039448 659 EGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGL 738 (1276)
Q Consensus 659 ~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l 738 (1276)
.+ ++++++..|+.|+-...+..++..++..|.++..+.... . +....++++.++||++++++||+
T Consensus 583 ~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~----~----------~~s~~~~~~~slLdl~~~~a~~~ 647 (1176)
T KOG1248|consen 583 GR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASD----L----------DESVASFKTLSLLDLLIALAPVQ 647 (1176)
T ss_pred cc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhcc----c----------hhhhhhHHHHHHHHHHHhhhccc
Confidence 87 888777777776666666666666666666665432111 0 01145689999999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC-CchhhhhHHHHHHHHHHhc--CcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHH
Q 039448 739 NAKEIDVLFVAIKPALQD-DEGLIQKKAYKVLSTILRK--CDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIA 815 (1276)
Q Consensus 739 ~~~~~~~Lf~~~~~~l~~-~d~~~QKKAYk~L~~i~~~--~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~ 815 (1276)
+++.+..+| .+.++..+ .++.+||||||+|.++++. +..|+.+++++|++.|.++..+++.++++.||.||++|+.
T Consensus 648 ~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 648 TESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred cchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999999 55566554 5899999999999999996 6779999999999999999999999999999999999997
Q ss_pred hccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHhccCCCCCCcccHHHHHHHHhhhccCCChhH
Q 039448 816 HVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIG--RAFGDEENGGGKENLYQFFNMVAGGLAGESPHM 893 (1276)
Q Consensus 816 ~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg--~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphM 893 (1276)
.++. ++.+||++.|||+||++||+|+++|..||+||+.|| +.+.+.+++-+++.|++|+.+|++||+|.++||
T Consensus 727 ~~~~-----e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~ 801 (1176)
T KOG1248|consen 727 LLSA-----EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRV 801 (1176)
T ss_pred hccH-----HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHH
Confidence 7652 468999999999999999999999999999999999 888776555458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHH--HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhh
Q 039448 894 ISAAVKGLARLAYEFSDLVSN--VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDT 971 (1276)
Q Consensus 894 iSatI~ALsrLl~ef~d~i~~--~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~ 971 (1276)
++++|+|+++++|||++.+++ +.+++++|+++|++++|||+++|+||+||+|.++|.+.|.+|+++|++.++.|+|||
T Consensus 802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~ 881 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH 881 (1176)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh
Confidence 999999999999999999885 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccCcccccccCcccc----ccccccccccc
Q 039448 972 KNQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLKNIRKIKERKERKLATKTEDTKSHFSKTT----TSRLSRWNHTK 1047 (1276)
Q Consensus 972 k~hfR~KVr~IlerLIRKfG~e~V~~~~Pee~~KlL~nIrK~~~R~kRkk~~~~~e~~~~~~~~~----~~~~~~~~~~~ 1047 (1276)
++|||.|||+||||||||||++.|++++||+|||+|.||||+++|++||++...+..+..+++.+ +..+....++|
T Consensus 882 k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r~R~~rK~a~~~d~~~~~~s~d~s~~~s~~~~a~~i~d 961 (1176)
T KOG1248|consen 882 KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRRRRKKRKKAMIVDIEDRSDSTDGSQKASAQKKAKTIED 961 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccchhHH
Confidence 99999999999999999999999999999999999999999999999998875322211111112 22233345566
Q ss_pred cccccCCCCCCCCcccccccCcccCCCCCCCccchhhhhHHHHHhhhhhhccCccccccccCCCccccCChHhhHhhhcc
Q 039448 1048 IFSDFGDEGSEGSDAEYMDVGTVSGQGSKASPQLKSKVSTLRLKKKRKADKILPEDLFDQLEDEPLDLLDRQKTRSALRS 1127 (1276)
Q Consensus 1048 i~~d~~d~d~e~~d~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~k~~~~~~~~~i~e~~deplDLLD~~~~~~~l~s 1127 (1276)
+++|+ |+| +|+|+.++ +++ ++...|.++ ...+..+..|+++++|||++++|+...++....
T Consensus 962 ~laDs-~s~-~D~e~n~~-----~~~-~~~~~~~k~-----------~s~r~~p~dllD~s~~~~~~~l~~~~~~~~~k~ 1022 (1176)
T KOG1248|consen 962 VLADS-DSD-EDMEANDA-----GER-RKKASTLKS-----------TSSRDQPRDLLDESDDEPLNTLTPKSAQRALKK 1022 (1176)
T ss_pred HHhcc-ccc-chhhhhhh-----hhc-cccchhccC-----------ccccCCcHHHHhhcccchhhhhchhhccchhhh
Confidence 66665 333 11111111 111 111111111 122334557999988999999999988888887
Q ss_pred ccccccCCCCCCCCcccCCCcEEeccCCCCCCCCCCCCCCCCcccc-----ccccCCCcc-hhh----------hhhccc
Q 039448 1128 SEHLKQKTESDDEPEIDSEGRLIIHEGRKPKKVKPSNPDLDGRSEA-----GSMMSRPSS-RKT----------QKRRKT 1191 (1276)
Q Consensus 1128 ~~~~k~~~~~d~~fk~~~dGRLII~e~~~~~~~~~~d~~~d~~~~~-----~~~~~~~~~-~~~----------~k~~k~ 1191 (1276)
++.+.|+.+.|++|+|+.||||||+|+....++++.++++|....- +.+..+.++ +++ .++++.
T Consensus 1023 q~~~~R~q~~d~~fk~s~dGrLii~~~~~~~~~~~~~~~sd~~~a~~~e~~~~~~k~~~k~~~~~e~~~~~~~~~~~~~a 1102 (1176)
T KOG1248|consen 1023 QKRTYRKQKPDSGFKFSRDGRLIIRDEERNNDKEKLREDSDANMADGEEDKKPPVKRFRKKKKFSESEYEYLEFPDSYKA 1102 (1176)
T ss_pred hhhhhhccCCccccccCCCCCeeeccccccccccccccccccccccchhhcccchhhhhhhhccccchhhhccCCccccc
Confidence 7777778888999999999999999776322223333333332221 111111111 111 114556
Q ss_pred CCCCc-------cccCccccccccCCcccccCccCcceeecCChhhhcccHhhHHHHHhhHHHHHHHhhhh
Q 039448 1192 SESGW-------AYTGSEYASKKASGDVKRKGKLEPYAYWPMDRKLMSRRPEHRAAARKGMASVVKLTKKL 1255 (1276)
Q Consensus 1192 ~~~g~-------~~~G~eyksKKA~GDvkkkgk~dPYAYiPL~r~~lnkR~~~k~~a~~g~~~vvk~~k~~ 1255 (1276)
+|+|+ ..+|++|++||++||+||+||.+||||+||+|..||+ +.|...|+.++|+++|.
T Consensus 1103 ~G~~~~r~~~~~~~~g~~~~~kk~k~d~~k~~k~~~~~~~p~~~~~l~~-----~~~~~~fk~~~r~~~~~ 1168 (1176)
T KOG1248|consen 1103 GGKGIHRDKLEKVWPGSEYGAKKQKGDRKKKGKKDPYAVIPLKRMELNS-----ALATTKFKKFLRAARKK 1168 (1176)
T ss_pred CCcchhHHHHhhccccchhhhhhcccchhhcCCCCceeeeehhhchhhH-----HHHHHHHHHHHHHhhcc
Confidence 77776 3579999999999999999999999999999999977 56778899999998753
|
|
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 1e-17
Identities = 114/675 (16%), Positives = 214/675 (31%), Gaps = 191/675 (28%)
Query: 35 EHQHLCAAIGAMSQE--LKD---QNLPLTPISYFGATCSSLDRLLSSPDPD-RSSHIIGS 88
EHQ+ I ++ ++ + + +++ P S + +D ++ S D + + +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 89 LSTILSLLLPKISVAVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVN 148
L + ++ K VL+ FL S + + R + R+
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFL------------------MSPIKTEQRQPSMMTRMY 112
Query: 149 WSDVSQLYGVVLAFMTDSRLKV-RRQSHLCVREILLSLQ-------------GTLVLAPA 194
+LY F ++ V R Q +L +R+ LL L+ G +A
Sbjct: 113 IEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 195 ---SEAITNMFE-KFLLLAGGSNTSADEKPKGAQEVLYVLDA--LKECLPLMSTKYTAVI 248
S + + K L + S + + Q++LY +D + K
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 249 LK-----------YFKTLLELR---------------QPLVTRR---VTDALNVICL-HP 278
++ Y LL L + L+T R VTD L+ H
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 279 TLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVF 338
+L+ + L T + + + L+ + + RE+ +T P
Sbjct: 290 SLDHHSMTL---------------TPDEVKSLLLKYLD---CRPQDLPREVLTT-NPR-- 328
Query: 339 NALKDILASEHEEAI------FAATEALKNLINACI---DESLIKQGVDQITNVNSDARK 389
L I S + + L +I + + + + ++ D+++ A
Sbjct: 329 -RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-- 385
Query: 390 SGPTVIEKICATVESLLDYHYSAVW-DMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQN 448
I + SL+ W D+ V + +KL YS L + Q
Sbjct: 386 -------HIPTILLSLI-------WFDVIKSDVMVVVNKLHKYS----------LVEKQP 421
Query: 449 ------LPDEDFPYRKQ------LHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWL 496
+P + + LH S V +P ++ DL
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHR---SIVDHYN-------IPKTFDSDDLIP----- 466
Query: 497 FPILKQYI---IGARLNFFMEKLLGMAKLIGQKSQKFE----LEGRVFSSRSADALVYSL 549
P L QY IG L K + + + F LE ++ +A S+
Sbjct: 467 -PYLDQYFYSHIGHHL-----KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 550 WSLLPSFCNYP---VDTAESFMDLAGVLCSAL--HEENDIRGIICSSLQNLIQQNKKTLE 604
+ L Y D + L + L EEN +ICS +L++ L
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN----LICSKYTDLLRI---ALM 573
Query: 605 GKNDLSNVVISTASQ 619
+++ + Q
Sbjct: 574 AEDE--AIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1276 | |||
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.57 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.56 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.56 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.56 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.55 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.47 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.47 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.39 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.16 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.12 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.95 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.66 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.44 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.37 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.34 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.2 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.17 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.12 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.12 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.11 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.95 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.84 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.82 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.67 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.52 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.41 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.31 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.09 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.05 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.03 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 96.88 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 96.72 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.71 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 96.63 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 96.58 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 96.53 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.5 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 96.45 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 96.41 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 96.16 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 96.15 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 96.09 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 95.96 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.88 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 95.52 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 95.5 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 95.32 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.96 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 94.68 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 94.16 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 93.68 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 93.44 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 93.2 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 93.2 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 93.15 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 92.71 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 92.3 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 92.04 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 91.56 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 91.19 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 90.3 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 90.06 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 88.75 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 87.48 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 87.17 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 86.6 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 86.33 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 86.24 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 85.86 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 84.75 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 84.08 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 83.67 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 83.55 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 81.55 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 81.46 |
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-10 Score=141.93 Aligned_cols=685 Identities=10% Similarity=0.096 Sum_probs=369.2
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhc-cCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHH
Q 039448 155 LYGVVLAFMTDSRLKVRRQSHLCVREILLS-LQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDAL 233 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~-~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lL 233 (1276)
.-..||....++-|+||+.+..++..|... +|.. . - +.+..++.+.+ ... .....-..++++|..+
T Consensus 96 ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~-~---w-~~ll~~L~~~l---~~~-----~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 96 IKTNALTALVSIEPRIANAAAQLIAAIADIELPHG-A---W-PELMKIMVDNT---GAE-----QPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-C---C-HHHHHHHHHHT---STT-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccc-c---c-HHHHHHHHHHH---hcC-----CCHHHHHHHHHHHHHH
Confidence 566788888888899999999999999874 3210 0 0 11222222222 100 0111123445555444
Q ss_pred Hhhc-cCC--CchhHHHHHHHHHHhhccC--chhHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHhcccCCCCCCc
Q 039448 234 KECL-PLM--STKYTAVILKYFKTLLELR--QPLVTRRVTDALNVICLHPTLEVS----AEALLDLLCSLALSVSTNETS 304 (1276)
Q Consensus 234 k~~l-~~~--~~~~~~~i~~~ll~Ll~l~--n~~lt~~~~~~~~~lf~~~~~~l~----~~~~~~li~aL~~~~~~~~~~ 304 (1276)
-.-+ +.+ -......+.+.+...+.-. ++-|...++++|..+..-....+. .+.+.+.|..+. .+..
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~-- 237 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT---QAED-- 237 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH---TCSC--
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHh---cCCC--
Confidence 3322 221 1346778888888888776 788999999999886422111111 123444444432 2111
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCHhHHhhhhh-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhh--hccccc
Q 039448 305 ADAMTFTARLLNVGMIKIYSINREICSTKLP-IVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQ--GVDQIT 381 (1276)
Q Consensus 305 ~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP-~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~--~v~~~~ 381 (1276)
...-.+...++ ..++...+..-..+++ .++..+...+.++.++++..|.+.+..+.....+...... +..+.
T Consensus 238 ~~~r~~a~~~l----~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~- 312 (861)
T 2bpt_A 238 IEVQAAAFGCL----CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL- 312 (861)
T ss_dssp HHHHHHHHHHH----HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC-
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch-
Confidence 11111222222 2222222222234666 7888888888899999999999999887765432111000 00000
Q ss_pred ccCCCcCCCChHHHHHHHHHHHhhhhcch----hhhH---HHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCC
Q 039448 382 NVNSDARKSGPTVIEKICATVESLLDYHY----SAVW---DMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDF 454 (1276)
Q Consensus 382 ~~~~~~~~~~~~~i~~i~~~~~~~L~~~y----~~aw---~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f 454 (1276)
. ........+..++..+-..|...- ...| ..+...+..+...+|.... ..++..+.++-. +.+.
T Consensus 313 ---~-~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~---~~l~~~l~~~l~--~~~~ 383 (861)
T 2bpt_A 313 ---Q-SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL---EPVLEFVEQNIT--ADNW 383 (861)
T ss_dssp ---C-CCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH---HHHHHHHHHHTT--CSSH
T ss_pred ---h-hHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH---HHHHHHHHHHcC--CCCh
Confidence 0 000001223344444433333210 0112 3455566666666664333 333333333322 2333
Q ss_pred cchhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhc
Q 039448 455 PYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEG 534 (1276)
Q Consensus 455 ~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~ 534 (1276)
..|..+=.++|+.+...+|+.+...+| -++|.|-......+ |.
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~-------------~il~~l~~~l~d~~---------~~--------------- 426 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVH-------------QALPSILNLMNDQS---------LQ--------------- 426 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHH-------------HHHHHHHHGGGCSC---------HH---------------
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHH-------------HHHHHHHHHcCCCc---------HH---------------
Confidence 445555555665554444443322211 12222222211110 00
Q ss_pred cchhhhhHHHHHHHHHhhhhCCCCCCcchhhhHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhh
Q 039448 535 RVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVI 614 (1276)
Q Consensus 535 ~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~ 614 (1276)
+ + .+ ....++-+..+|....+-...+..+-+.|...|.+.|..|...|.+|..+++.-.. .. .
T Consensus 427 --v--r--~~-a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~---~~--~----- 489 (861)
T 2bpt_A 427 --V--K--ET-TAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE---AT--P----- 489 (861)
T ss_dssp --H--H--HH-HHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSS---SS--S-----
T ss_pred --H--H--HH-HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhccc---cc--c-----
Confidence 0 0 00 00111112222211111134566766777777877899999999999999865310 00 0
Q ss_pred hhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCC--ccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 039448 615 STASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESA--KDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLE 692 (1276)
Q Consensus 615 ~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~--~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~ 692 (1276)
..+..|...+++.|+++..... +..+....++|...+...+.+ +..++..++..+.+
T Consensus 490 --------------------~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 490 --------------------SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMD 548 (861)
T ss_dssp --------------------CGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHH
T ss_pred --------------------hhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHH
Confidence 1233455678888988887543 344556678888888777654 34455555444444
Q ss_pred HHHHhc-ccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCCh---hhHHHHHHHHhhhhcCCch-hhhhHHHH
Q 039448 693 ATQEAG-KTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNA---KEIDVLFVAIKPALQDDEG-LIQKKAYK 767 (1276)
Q Consensus 693 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~---~~~~~Lf~~~~~~l~~~d~-~~QKKAYk 767 (1276)
.....- .+..--+ .++. ......+..+++.+..++..++. ..+..++..+...+++.+. .++..++.
T Consensus 549 ~l~~~~~~~~~i~~-----~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~ 620 (861)
T 2bpt_A 549 KLGQTMSVDENQLT-----LEDA---QSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620 (861)
T ss_dssp HHHHHTTSCGGGCC-----HHHH---HHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHH
T ss_pred HHHHHHhhhcccCC-----hhhH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHH
Confidence 432110 0000000 0000 01112445566666666655443 3456677777777777666 88999999
Q ss_pred HHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhh--
Q 039448 768 VLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEAN-- 845 (1276)
Q Consensus 768 ~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N-- 845 (1276)
.+..++.....-+..++..+...|...+.......+..=+.++..++..+.. ....++..+++-++-++++.|
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~ 695 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-----DFRRYSDAMMNVLAQMISNPNAR 695 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-----GGHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch-----hccchHHHHHHHHHHHhCCcccc
Confidence 9999988554445567777777777776443344455555566666544322 234677888887777777765
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHh----hhccCCC-----------hhHHHHHHHHHHHHHHHhhh
Q 039448 846 KRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVA----GGLAGES-----------PHMISAAVKGLARLAYEFSD 910 (1276)
Q Consensus 846 ~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~----aGLaG~t-----------phMiSatI~ALsrLl~ef~d 910 (1276)
...|..|+..|-.|...+.+ .+..|+..++ ..+.... .....+++-+++.++...++
T Consensus 696 ~~vr~~~~~~l~~l~~~~~~--------~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~ 767 (861)
T 2bpt_A 696 RELKPAVLSVFGDIASNIGA--------DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD 767 (861)
T ss_dssp TTHHHHHHHHHHHHHHHHGG--------GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhhhHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999998743 3555554443 3333211 23567888899999977652
Q ss_pred ---hhH-HHHHhhhHHHHHhccC----CHHHHHHHHHHHHHHHhhcChhHHHHHHH-HHHHHHhhc
Q 039448 911 ---LVS-NVYKLLPSTFLLLQRK----NREIIKANLGLLKVLVAKSHAEGLQIHLA-SMVEGLLKW 967 (1276)
Q Consensus 911 ---~i~-~~~~ll~~v~llL~s~----~REIvKsaLgFvKV~v~~lp~~~l~~~L~-~lv~~Ll~w 967 (1276)
.+. .+.++++.+...+.+. +.+|.+++++.+-.++..+|...+.++++ .+++.|++.
T Consensus 768 ~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~ 833 (861)
T 2bpt_A 768 KPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKR 833 (861)
T ss_dssp CHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHH
Confidence 222 3445555555556553 88999999999999999996566667776 666766654
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1276 | ||||
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.002 |
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 0.002
Identities = 83/551 (15%), Positives = 168/551 (30%), Gaps = 36/551 (6%)
Query: 446 MQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVW---------- 495
+ N+ D R + + + + + LLP D + N
Sbjct: 94 LNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKI 153
Query: 496 ---LFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRV-FSSRSADALVYSLWS 551
IL ++ LN + K L K K + + F AL+ + S
Sbjct: 154 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDS 213
Query: 552 LLPSFCNYPVDTAESFMDLAGVLCSALHEENDIRGIICS-SLQNLIQQNKKTLEGKNDLS 610
+ D C AL ++R + N+++ + + +++
Sbjct: 214 FTENLFALAGDEEPEVRKNV---CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDE-- 268
Query: 611 NVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDF 670
+ A + T +VL +L+ +L S D L+ + +
Sbjct: 269 ----NVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI-ILLKGDVEED 323
Query: 671 ASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDL 730
+I D E R + + E G + + + DD+ ++ + A D+
Sbjct: 324 ETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDV 383
Query: 731 ALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGL 790
++ + + + +K L E ++++ VL I C + L EL+
Sbjct: 384 LANV---YRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 440
Query: 791 MIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRN 850
+I+ L + L V + L +TE++ + ++NKR +
Sbjct: 441 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD----TYLKPLMTELLKRILDSNKRVQE 496
Query: 851 RAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 910
A + E L ++ ++ A+ LA +
Sbjct: 497 AACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLN 555
Query: 911 LVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVL--VAKSHAEGLQIHLASMVEGLLKWQ 968
+ L+P E K LL+ L VA + G + + + +
Sbjct: 556 KPEYIQMLMPPLIQKWNMLKDE-DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 614
Query: 969 DDTKNQFKSKI 979
T Q
Sbjct: 615 QKTLAQAMLNN 625
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1276 | |||
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.47 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.45 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.42 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.1 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.08 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.02 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.92 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.68 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.45 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.44 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.05 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.78 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.58 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 96.47 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.36 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 93.75 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 93.52 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 91.16 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 90.28 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 89.13 |
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=4.6e-09 Score=128.28 Aligned_cols=240 Identities=13% Similarity=0.177 Sum_probs=164.8
Q ss_pred hhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCcc-chHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHH
Q 039448 761 IQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFS-AKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIIL 839 (1276)
Q Consensus 761 ~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~-ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL 839 (1276)
++-.+..+|..++..+........+.++..+...+...... -+..-+.++..++..+... ...+++.++|-++-
T Consensus 572 l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~-----~~~~l~~i~p~l~~ 646 (861)
T d2bpta1 572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-----FEKYLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHH-----HHHHHHHHhhHHHH
Confidence 45556667777777666666777888888888776554443 4567788888887665443 35789999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCC--ChhHHHHHHHHHHHHHHHhhhhh-HHHH
Q 039448 840 ALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGE--SPHMISAAVKGLARLAYEFSDLV-SNVY 916 (1276)
Q Consensus 840 ~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~--tphMiSatI~ALsrLl~ef~d~i-~~~~ 916 (1276)
+..+.+...|..|+.++-.|++.+.+. -...+.+++..+...|... ++....+++.+|+.++...+... +.+.
T Consensus 647 ~l~~~~~~v~~~a~~~l~~i~~~~~~~----~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~ 722 (861)
T d2bpta1 647 ALNQVDSPVSITAVGFIADISNSLEED----FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN 722 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHTGGG----GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhHHH----hHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877542 1234556666666666543 34567899999999998776543 3355
Q ss_pred HhhhHHHHHhccC----C-------HHHHHHHHHHHHHHHhhc--ChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHH--
Q 039448 917 KLLPSTFLLLQRK----N-------REIIKANLGLLKVLVAKS--HAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKL-- 981 (1276)
Q Consensus 917 ~ll~~v~llL~s~----~-------REIvKsaLgFvKV~v~~l--p~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~-- 981 (1276)
++++.+.-.++.. + .++..+++...+-++..+ +.+.+.||++.|++.+..|-.+...+....++.
T Consensus 723 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 802 (861)
T d2bpta1 723 DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAA 802 (861)
T ss_dssp HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHH
Confidence 5555544333332 2 234556666555555544 577899999999999999988777666554443
Q ss_pred --HHHHHHHhcCHHHHHhcCCHH-HHHHHHH
Q 039448 982 --LLEMLVKKCGLDAVKAVMPEE-HMKLLKN 1009 (1276)
Q Consensus 982 --IlerLIRKfG~e~V~~~~Pee-~~KlL~n 1009 (1276)
++..|+..||...+..++-++ ..++++.
T Consensus 803 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~ 833 (861)
T d2bpta1 803 VGLIGDIAAMFPDGSIKQFYGQDWVIDYIKR 833 (861)
T ss_dssp HHHHHHHHHHCTTSTTGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcchhHHHHHhhHHHHHHHHH
Confidence 567788899887777666433 3455443
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|