Citrus Sinensis ID: 039453

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE
ccEEEEEEcccccccccEEEEEEccEEEEEEEcccccccccccccccccccccccccccccEEEEccccccccccccHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcEEEccccEEEcccccEEEEEccccHHHHEEEEEEEccEEEEEEEcccccccccccccccccccccEEEEc
cEEEEEEcccccccccEEEEEEEcccEEEEEcccccccccccccccccccccccccHHHccEEEEccccHHHHccHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccEEEEEccEEEEcccccEEEEEcccHHHHHHEEEEEEcccEEEEEccccccccccccccccccccccEEEEc
MAIDCLVLGAGQEVGKSCVVVTINgkrimfdcgmhmayndhrqypdfsriskscdfnnaiDCIVITHFhldhigalpffteicgyngpiymtyptralapiMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDsamvytgdynmtpdrhlgAARIDRLQLDLLITE
maidclvlgagqevgksCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE
MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE
**IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLI**
MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV*********QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE
MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE
MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q8GUU3 613 Cleavage and polyadenylat yes no 1.0 0.329 0.806 2e-99
Q54YL3 744 Integrator complex subuni yes no 1.0 0.271 0.678 2e-85
Q3MHC2 600 Integrator complex subuni yes no 0.965 0.325 0.656 7e-78
Q9CWS4 600 Integrator complex subuni yes no 0.965 0.325 0.656 7e-78
Q5ZIH0 600 Integrator complex subuni yes no 0.990 0.333 0.645 1e-77
Q5NVE6 600 Integrator complex subuni yes no 0.965 0.325 0.646 9e-77
Q5TA45 600 Integrator complex subuni yes no 0.965 0.325 0.646 9e-77
Q2YDM2 599 Integrator complex subuni yes no 0.965 0.325 0.641 3e-75
Q503E1 598 Integrator complex subuni yes no 0.990 0.334 0.61 1e-74
Q9C952 693 Cleavage and polyadenylat no no 0.920 0.268 0.426 3e-38
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2 Back     alignment and function desciption
 Score =  361 bits (927), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 163/202 (80%), Positives = 189/202 (93%)

Query: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
           MAIDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHM  +DH +YP+FS ISKS DF+NAI
Sbjct: 1   MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60

Query: 61  DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
            CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct: 61  SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120

Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
           T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAK+GD+A+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180

Query: 181 TPDRHLGAARIDRLQLDLLITE 202
           T DRHLGAA+IDRLQLDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202
Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. May function as mRNA 3'-end-processing endonuclease and also be involved in the histone 3'-end pre-mRNA processing.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 7EC: .EC: -
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1 Back     alignment and function description
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1 Back     alignment and function description
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2 Back     alignment and function description
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2 Back     alignment and function description
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2 Back     alignment and function description
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1 Back     alignment and function description
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
255570075 963 cleavage and polyadenylation specificity 1.0 0.209 0.866 1e-105
449460766 649 PREDICTED: cleavage and polyadenylation 1.0 0.311 0.866 1e-104
224108267 639 predicted protein [Populus trichocarpa] 1.0 0.316 0.871 1e-104
46360445 708 ACT11D09.9 [Cucumis melo] 0.955 0.272 0.865 4e-99
297814408 819 hypothetical protein ARALYDRAFT_322516 [ 1.0 0.246 0.816 1e-98
356502382 516 PREDICTED: cleavage and polyadenylation 1.0 0.391 0.831 2e-98
27372065 613 FEG protein [Arabidopsis thaliana] 1.0 0.329 0.806 7e-98
4220489 837 putative cleavage and polyadenylation sp 1.0 0.241 0.806 9e-98
30677952 613 cleavage and polyadenylation specificity 1.0 0.329 0.806 9e-98
388507878 534 unknown [Medicago truncatula] 1.0 0.378 0.811 2e-97
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/202 (86%), Positives = 195/202 (96%)

Query: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
           MAI+CLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM Y+DHR+YPDFS ISKS DF++A+
Sbjct: 1   MAIECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSAL 60

Query: 61  DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
            C++ITHFHLDH+GALP+FTE+CGYNGP+YMTYPT+AL+P+MLEDYRKV+VDRRGE EQF
Sbjct: 61  HCVIITHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQF 120

Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
           T+DHI +C+ KVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM
Sbjct: 121 TADHIKQCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180

Query: 181 TPDRHLGAARIDRLQLDLLITE 202
           TPDRHLGAA+IDRLQLDLLITE
Sbjct: 181 TPDRHLGAAQIDRLQLDLLITE 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo] Back     alignment and taxonomy information
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp. lyrata] gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Glycine max] Back     alignment and taxonomy information
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II [Arabidopsis thaliana] gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 3-II; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit II; Short=AtCPSF73-II; Short=CPSF 73 kDa subunit II; AltName: Full=Protein EMBRYO SAC DEVELOPMENT ARREST 26 gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis thaliana] gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2065368 613 CPSF73-II "AT2G01730" [Arabido 1.0 0.329 0.806 2.1e-91
DICTYBASE|DDB_G0278189 744 ints11 "integrator complex sub 1.0 0.271 0.678 2.4e-76
MGI|MGI:1919207 600 Cpsf3l "cleavage and polyadeny 0.965 0.325 0.656 8.6e-72
RGD|1306841 600 Cpsf3l "cleavage and polyadeny 0.965 0.325 0.656 8.6e-72
UNIPROTKB|F1NV30 600 CPSF3L "Integrator complex sub 0.965 0.325 0.656 1.1e-71
UNIPROTKB|Q5ZIH0 600 CPSF3L "Integrator complex sub 0.965 0.325 0.656 1.1e-71
UNIPROTKB|E2QY53 600 CPSF3L "Uncharacterized protei 0.965 0.325 0.646 7.7e-71
UNIPROTKB|E9PNS4278 CPSF3L "Integrator complex sub 0.965 0.701 0.646 9.9e-71
UNIPROTKB|Q5TA45 600 CPSF3L "Integrator complex sub 0.965 0.325 0.646 9.9e-71
UNIPROTKB|E9PI75209 CPSF3L "Integrator complex sub 0.960 0.928 0.644 2.6e-70
TAIR|locus:2065368 CPSF73-II "AT2G01730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 163/202 (80%), Positives = 189/202 (93%)

Query:     1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
             MAIDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHM  +DH +YP+FS ISKS DF+NAI
Sbjct:     1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60

Query:    61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
              CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct:    61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120

Query:   121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
             T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAK+GD+A+VYTGDYNM
Sbjct:   121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180

Query:   181 TPDRHLGAARIDRLQLDLLITE 202
             T DRHLGAA+IDRLQLDLLI+E
Sbjct:   181 TTDRHLGAAKIDRLQLDLLISE 202
GO:0003824 "catalytic activity" evidence=ISS
GO:0008152 "metabolic process" evidence=ISS
GO:0016787 "hydrolase activity" evidence=IEA
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
DICTYBASE|DDB_G0278189 ints11 "integrator complex subunit 11" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1919207 Cpsf3l "cleavage and polyadenylation specific factor 3-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306841 Cpsf3l "cleavage and polyadenylation specific factor 3-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NV30 CPSF3L "Integrator complex subunit 11" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIH0 CPSF3L "Integrator complex subunit 11" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QY53 CPSF3L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E9PNS4 CPSF3L "Integrator complex subunit 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TA45 CPSF3L "Integrator complex subunit 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PI75 CPSF3L "Integrator complex subunit 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GUU3CPS3B_ARATH3, ., 1, ., 2, 7, ., -0.80691.00.3295yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
COG1236 427 COG1236, YSH1, Predicted exonuclease of the beta-l 1e-51
TIGR03675 630 TIGR03675, arCOG00543, arCOG00543 universal archae 1e-41
COG1782 637 COG1782, COG1782, Predicted metal-dependent RNase, 1e-39
COG0595 555 COG0595, COG0595, mRNA degradation ribonucleases J 2e-18
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 1e-16
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase sup 3e-12
TIGR00649 422 TIGR00649, MG423, conserved hypothetical protein 6e-10
COG1234292 COG1234, ElaC, Metal-dependent hydrolases of the b 2e-08
COG1235269 COG1235, PhnP, Metal-dependent hydrolases of the b 3e-08
PRK00055270 PRK00055, PRK00055, ribonuclease Z; Reviewed 7e-07
TIGR02651 299 TIGR02651, RNase_Z, ribonuclease Z 1e-05
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 2e-05
COG1237259 COG1237, COG1237, Metal-dependent hydrolases of th 4e-05
PRK02113252 PRK02113, PRK02113, putative hydrolase; Provisiona 4e-05
COG0491252 COG0491, GloB, Zn-dependent hydrolases, including 6e-05
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  171 bits (435), Expect = 1e-51
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 13/200 (6%)

Query: 3   IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
           +    LGA +EVG+SCV++   G RI+ DCG+        + P              +D 
Sbjct: 1   MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGD-PSPERPL-------LPPFPKVDA 52

Query: 63  IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
           +++TH HLDHIGALP+     G+ GP+Y T PT AL  ++L D  K+      +   ++ 
Sbjct: 53  VLLTHAHLDHIGALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAEG--PDKPPYSE 109

Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
           + +      +  +   + V+V   +++  Y AGH+LG+A    +V    ++YTGD     
Sbjct: 110 EDVERVPDLIRPLPYGEPVEVG-GVKVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRK 168

Query: 183 DRHLGAARIDRLQLDLLITE 202
           DR L  A +    +D+LI E
Sbjct: 169 DRLLNGAELPPC-IDVLIVE 187

Length = 427
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein Back     alignment and domain information
>gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed Back     alignment and domain information
>gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|224158 COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>gnl|CDD|179371 PRK02113, PRK02113, putative hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
KOG1136 501 consensus Predicted cleavage and polyadenylation s 100.0
TIGR03675 630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.97
COG1782 637 Predicted metal-dependent RNase, consists of a met 99.96
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase f 99.95
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 99.93
TIGR00649 422 MG423 conserved hypothetical protein. Contains an 99.93
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.9
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.89
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 99.89
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.89
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.89
PRK02113252 putative hydrolase; Provisional 99.86
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.86
PRK00055270 ribonuclease Z; Reviewed 99.85
PRK00685228 metal-dependent hydrolase; Provisional 99.85
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.84
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.84
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.83
PLN02469258 hydroxyacylglutathione hydrolase 99.79
PRK02126 334 ribonuclease Z; Provisional 99.78
PLN02398329 hydroxyacylglutathione hydrolase 99.77
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 99.76
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 99.76
PRK04286298 hypothetical protein; Provisional 99.76
PLN02962251 hydroxyacylglutathione hydrolase 99.75
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.74
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 99.74
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 99.73
PRK11709 355 putative L-ascorbate 6-phosphate lactonase; Provis 99.73
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 99.71
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 99.7
PRK11539755 ComEC family competence protein; Provisional 99.7
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 99.69
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 99.69
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 99.68
KOG0813 265 consensus Glyoxylase [General function prediction 99.65
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 99.58
COG0426 388 FpaA Uncharacterized flavoproteins [Energy product 99.57
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 99.54
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 99.52
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 99.51
KOG1138 653 consensus Predicted cleavage and polyadenylation s 99.5
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 99.46
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.43
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 99.24
KOG0814237 consensus Glyoxylase [General function prediction 99.16
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 98.97
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 98.83
KOG1361 481 consensus Predicted hydrolase involved in interstr 98.78
KOG4736302 consensus Uncharacterized conserved protein [Funct 98.36
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 98.14
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 98.08
PF1369163 Lactamase_B_4: tRNase Z endonuclease 97.68
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 97.41
KOG3592 934 consensus Microtubule-associated proteins [Cytoske 95.09
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 94.74
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1e-35  Score=222.69  Aligned_cols=202  Identities=69%  Similarity=1.227  Sum_probs=194.2

Q ss_pred             CceeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhh
Q 039453            1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFT   80 (202)
Q Consensus         1 m~~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~   80 (202)
                      |.|+++.||.||.+|.+|+++..++++||+|||.-+.+.+.+++|+++++...+...+-||.|+|||.|.||||++|.+.
T Consensus         2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs   81 (501)
T KOG1136|consen    2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS   81 (501)
T ss_pred             CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence            57899999999999999999999999999999999999999999999999999888788999999999999999999999


Q ss_pred             hhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccce
Q 039453           81 EICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGA  160 (202)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~  160 (202)
                      +-.+.++|+|.+.++..+++-.++++++....+.++...|....+.+....+..+.-.++++++++++++++.+||-.|.
T Consensus        82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGA  161 (501)
T KOG1136|consen   82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGA  161 (501)
T ss_pred             hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccce
Confidence            99899999999999999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             EEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453          161 AMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE  202 (202)
Q Consensus       161 ~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e  202 (202)
                      .+++++.++.+++|+||.+.+++..+..+.....++|+||.|
T Consensus       162 aMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsE  203 (501)
T KOG1136|consen  162 AMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISE  203 (501)
T ss_pred             eEEEEEecceeEEEecCccCCcccccchhhhccccCceEEee
Confidence            999999999999999999999999998888888899999987

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
2i7t_A 459 Structure Of Human Cpsf-73 Length = 459 1e-34
2ycb_A 636 Structure Of The Archaeal Beta-Casp Protein With N- 4e-26
2xr1_A 640 Dimeric Archaeal Cleavage And Polyadenylation Speci 7e-23
3af5_A 651 The Crystal Structure Of An Archaeal Cpsf Subunit, 5e-22
3ie2_A 431 Crystal Structure Of H400v Mutant Ttha0252 From The 9e-17
3idz_A 431 Crystal Structure Of S378q Mutant Ttha0252 From The 9e-17
3ie1_A 431 Crystal Structure Of H380a Mutant Ttha0252 From The 9e-17
3ie0_A 431 Crystal Structure Of S378y Mutant Ttha0252 From The 9e-17
3iek_A 431 Crystal Structure Of Native Ttha0252 From Thermus T 9e-17
2dkf_A 431 Crystal Structure Of Ttha0252 From Thermus Thermoph 8e-16
3a4y_A 431 Crystal Structure Of H61a Mutant Ttha0252 From Ther 1e-15
3bk1_A 562 Crystal Structure Analysis Of Rnase J Length = 562 6e-05
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73 Length = 459 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
           LGAGQEVG+SC+++   G++IM DCG+H         P    I  +      ID ++I+H
Sbjct: 17  LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68  FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
           FHLDH GALP+F +   + G  +MT+ T+A+   +L DY KV  +   +   +T   + E
Sbjct: 72  FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
            M K+  ++  +  +V   ++   Y+AGHVLGAAMF  ++    ++YTGD++   DRHL 
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
           AA I  ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With N-Terminal Kh Domains From Methanothermobacter Thermautotrophicus Length = 636 Back     alignment and structure
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity Factor With N-Terminal Kh Domains (Kh-Cpsf) From Methanosarcina Mazei Length = 640 Back     alignment and structure
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 Back     alignment and structure
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna Length = 431 Back     alignment and structure
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8, A Rna Degradation Protein Of The Metallo-Beta-Lactamase Superfamily Length = 431 Back     alignment and structure
>pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3BK1|A Chain A, Crystal Structure Analysis Of Rnase J Length = 562 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 8e-80
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 4e-79
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 2e-78
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 3e-75
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 9e-73
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 3e-54
2az4_A 429 Hypothetical protein EF2904; structural genomics, 1e-16
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 6e-12
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 7e-12
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 2e-11
3zwf_A 368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 1e-07
1ztc_A221 Hypothetical protein TM0894; structural genomics, 2e-07
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 3e-07
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 7e-07
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 9e-07
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 1e-06
3adr_A261 Putative uncharacterized protein ST1585; quorum se 2e-06
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 3e-06
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 3e-06
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 6e-06
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 6e-06
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 3e-05
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 5e-05
2zo4_A 317 Metallo-beta-lactamase family protein; hydrolase; 7e-05
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 9e-05
1y44_A 320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 1e-04
2cbn_A 306 Ribonuclease Z; phosphodiesterase beta lactamase t 1e-04
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 2e-04
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 3e-04
1vme_A 410 Flavoprotein; TM0755, structural genomics, JCSG, p 3e-04
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 3e-04
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 3e-04
3esh_A280 Protein similar to metal-dependent hydrolase; stru 4e-04
3rpc_A264 Possible metal-dependent hydrolase; structural gen 8e-04
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure
 Score =  249 bits (638), Expect = 8e-80
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 6/200 (3%)

Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFN-NAIDCIV 64
           LG  +EVG+S ++V  +   ++ D G+++A  +  ++ +P F             +D I+
Sbjct: 194 LGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAII 253

Query: 65  ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
           ITH HLDH G LP+      ++GPIY T PTR L  ++ +D+ + +    G+   +    
Sbjct: 254 ITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIE-IQQSNGQDPLYRPRD 312

Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
           I E +K  I +D  +   +  D+++  + AGH+LG+A+ +  +G+    +  TGD+   P
Sbjct: 313 IKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIP 372

Query: 183 DRHLGAARIDRLQLDLLITE 202
            R L  A     +L+ L+ E
Sbjct: 373 TRLLEPANAKFPRLETLVME 392
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429 Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Length = 562 Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Length = 555 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368 Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Length = 274 Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Length = 284 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Length = 276 Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Length = 254 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Length = 289 Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Length = 317 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Length = 294 Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Length = 269 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Length = 207 Back     alignment and structure
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR initiative, PSI, joint center for structural genomics, ELEC transport; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Length = 303 Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Length = 331 Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 280 Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Length = 264 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.97
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 99.97
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 99.96
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.96
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 99.95
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.95
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.94
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.93
2az4_A 429 Hypothetical protein EF2904; structural genomics, 99.93
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.92
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.92
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.91
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.91
3zwf_A 368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.89
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.89
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.88
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.88
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.87
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.86
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.86
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.85
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.84
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.84
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.84
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.83
4efz_A298 Metallo-beta-lactamase family protein; structural 99.83
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.83
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.83
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.83
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.83
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.83
2zo4_A 317 Metallo-beta-lactamase family protein; hydrolase; 99.82
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.82
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.82
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 99.82
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.81
2wyl_A 360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.81
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 99.8
1qh5_A 260 Glyoxalase II, protein (hydroxyacylglutathione hyd 99.8
3bv6_A 379 Metal-dependent hydrolase; metallo protein, beta-l 99.8
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.8
2p18_A 311 Glyoxalase II; metalloprotein, beta sandwich, alph 99.8
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.8
1xm8_A254 Glyoxalase II; structural genomics, protein struct 99.8
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.8
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.79
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.79
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.79
4b87_A 367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.79
4dik_A 410 Flavoprotein; TM0755, electron transport, DI-iron 99.79
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.78
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.78
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.78
3r2u_A 466 Metallo-beta-lactamase family protein; structural 99.78
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 99.77
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.77
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 99.76
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 99.76
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 99.76
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.75
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.75
3zdk_A 336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.75
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.74
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 99.73
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 99.71
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.7
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 99.64
2p97_A201 Hypothetical protein; putative metal-dependent hyd 99.63
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 99.37
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.36
3h3e_A267 Uncharacterized protein TM1679; structural genomic 98.9
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
Probab=99.97  E-value=2.8e-30  Score=208.35  Aligned_cols=186  Identities=28%  Similarity=0.471  Sum_probs=148.7

Q ss_pred             eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453            3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI   82 (202)
Q Consensus         3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~   82 (202)
                      |+++++|+++++++||++|+.++..+|||||......      ....+...+..+.+|++|++||.|.||++|++.+.+.
T Consensus         1 M~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~------~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~~   74 (431)
T 3iek_A            1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKE------EARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFRE   74 (431)
T ss_dssp             CEEEECSCSSSSSCCCEEEEETTEEEEECCCCCCGGG------GGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHHT
T ss_pred             CEEEEeCCCCCCCCcEEEEEECCeEEEEeCCCCcchh------hccchhhcCCCcccCCEEEECCCChHHhccHHHHHHc
Confidence            6889999999999999999999999999999843221      1122333345568899999999999999999999875


Q ss_pred             cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEE
Q 039453           83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM  162 (202)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~  162 (202)
                       +++.+||+++++..+++..+.++....     ..+.|...........+..+..++.+.++ +++++++++||++|+++
T Consensus        75 -~~~~~Iy~t~~t~~l~~~~l~d~~~~~-----~~~~y~~~~~~~~~~~~~~l~~~~~~~l~-g~~v~~~~agH~~Gs~~  147 (431)
T 3iek_A           75 -GYRGPVYATRATVLLMEIVLEDALKVM-----DEPFFGPEDVEEALGHLRPLEYGEWLRLG-ALSLAFGQAGHLPGSAF  147 (431)
T ss_dssp             -TCCSCEEECHHHHHHHHHHHHHHHHHC-----SSCSSCHHHHHHHHHTEEECCTTCCEEET-TEEEEEEECCSSTTCEE
T ss_pred             -CCCCeEEEcHHHHHHHHHHHHHHHhhc-----ccCCCCHHHHHHHHhccEEcCCCCeEEeC-CEEEEEEeCCCCcCceE
Confidence             347899999999988776665544321     22456666666666788899999999996 89999999999999999


Q ss_pred             EEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453          163 FYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE  202 (202)
Q Consensus       163 ~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e  202 (202)
                      +.++.++++++|+||+.+.++..+..... ..++|+||+|
T Consensus       148 ~~i~~~~~~ilfsGD~~~~~~~~l~~~~~-~~~~D~LI~E  186 (431)
T 3iek_A          148 VVAQGEGRTLVYSGDLGNREKDVLPDPSL-PPLADLVLAE  186 (431)
T ss_dssp             EEEEETTEEEEECCCCCCTTSSSSCCCCB-CCCCSEEEEE
T ss_pred             EEEEECCEEEEEeCCCCCCCCcccCCccc-cCCccEEEEE
Confidence            99999999999999999888776533222 2479999987
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 1e-45
d2i7ta1 451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 4e-37
d2dkfa1 431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 1e-34
d2az4a1183 d.157.1.10 (A:56-238) Hypothetical protein EF2904 3e-11
d1wraa1305 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholi 5e-11
d2e7ya1280 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther 7e-08
d1p9ea_294 d.157.1.5 (A:) Methyl parathion hydrolase {Pseudom 3e-06
d1zkpa1244 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B 7e-05
d1ztca1207 d.157.1.11 (A:1-207) Hypothetical protein TM0894 { 9e-05
d1vmea2250 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, 1e-04
d2q0ia1298 d.157.1.14 (A:1-298) Quinolone signal response pro 2e-04
d2gmna1264 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Br 6e-04
d1k07a_262 d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoriba 0.004
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  155 bits (392), Expect = 1e-45
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 24/214 (11%)

Query: 5   CLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIV 64
           C   G+G        VV  +   ++ D G + +   + Q   +            ID I+
Sbjct: 7   CCDDGSGTT---VGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIP-----EIDVII 58

Query: 65  ITHFHLDHIGALPF----FTEICGYNGPIYMTYPTRALAPIMLEDYRKV-LVDRRGEVEQ 119
           ++   ++ +GA       FT        +Y T P   L  +   D      V    +  +
Sbjct: 59  LSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNK 118

Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDK---DLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
              + I      ++ +   Q V +      L + AY AG   G +++        +VY  
Sbjct: 119 LDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAK 178

Query: 177 DYNMTPDRHLGAARI--------DRLQLDLLITE 202
            +N T D  L AA I          L     I  
Sbjct: 179 RWNHTRDNILNAASILDATGKPLSTLMRPSAIIT 212
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Length = 294 Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Length = 207 Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus 99.98
d2i7ta1 451 Cleavage and polyadenylation specificity factor su 99.97
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.96
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.92
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.85
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 99.85
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.85
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.85
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.85
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.85
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 99.85
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.82
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 99.81
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 99.8
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.78
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.75
d1qh5a_ 260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.74
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 99.73
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.73
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.72
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.7
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 99.7
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.7
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 99.67
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.67
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 99.65
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 99.65
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.61
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 99.58
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.5
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 99.4
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Putative RNA-degradation protein TTHA0252
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=4.6e-31  Score=211.43  Aligned_cols=186  Identities=28%  Similarity=0.460  Sum_probs=150.7

Q ss_pred             eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453            3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI   82 (202)
Q Consensus         3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~   82 (202)
                      ||+++||+++++|+||++|+.+++.+|||||.......      ...+...+..+++|++|++||.|.||+||++.+.+.
T Consensus         1 mki~~lGg~~~ig~sc~lv~~~~~~iLiD~G~~~~~~~------~~~~~~~~~~~~~id~I~iTH~H~DHigglp~l~~~   74 (431)
T d2dkfa1           1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEE------ARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFRE   74 (431)
T ss_dssp             CEEEECSCSSSSSCCEEEEEETTEEEEEEECCCCGGGT------TTTTSCCSSCGGGCCEEECCSCCSTTTTTHHHHHHT
T ss_pred             CEEEEECCCCCCcccEEEEEECCcEEEEECCCCCCccc------ccchhhcCCChhhCCEEEECCCChHHHCchHHHHhc
Confidence            68899999999999999999999999999996543321      222333455668899999999999999999999764


Q ss_pred             cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEE
Q 039453           83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM  162 (202)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~  162 (202)
                       +++.++|+++++..+++..+.+....     ...+.+..............+..++.++++ +++++++++||++++++
T Consensus        75 -~~~~~i~~~~~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~v~~~~~gH~~g~~~  147 (431)
T d2dkfa1          75 -GYRGPVYATRATVLLMEIVLEDALKV-----MDEPFFGPEDVEEALGHLRPLEYGEWLRLG-ALSLAFGQAGHLPGSAF  147 (431)
T ss_dssp             -TCCSCEEECHHHHHHHHHHHHHHHHH-----CSSCSSCHHHHHHHHTTEEECCSSCCEESS-SCEEEEEECCSSTTCEE
T ss_pred             -CCCCcEEcCHHHHHHHHHHhhhhhhc-----cccccCCHHHHHHHHhhcccccCCCeEEEC-CEEEEEEecCCCCccEE
Confidence             35789999999998877666544332     233456666666667778888899999998 79999999999999999


Q ss_pred             EEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453          163 FYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE  202 (202)
Q Consensus       163 ~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e  202 (202)
                      +.+++++++++|+||+...+...+.....+ ..+|+|++|
T Consensus       148 ~~i~~~~~~i~ytgD~~~~~~~~l~~~~~~-~~~d~li~e  186 (431)
T d2dkfa1         148 VVAQGEGRTLVYSGDLGNREKDVLPDPSLP-PLADLVLAE  186 (431)
T ss_dssp             EEEEETTEEEEECCSCCCTTSSSSCCCCBC-CCCSEEEEE
T ss_pred             EEEEECCeeeeecCCcCcCCCccCCCchhh-hhccccccc
Confidence            999999999999999999988776665444 368999986
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure