Citrus Sinensis ID: 039459

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------
MGTKRMRANLGNEDLDKLSAPPGFMSLTSFLLKKVENSEESCNSVAFASASAQEPVCANAPSDMVDAGTLKRSLRNRPWILYEQSDNNQKESNFEQPVEELSSRATLPKGVIRGCPDCSNCLKVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQRMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHSYSSRDGLRPNSQAEESKQTEYKPLDSAKFNGVGSDSFS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHcccHHHHcHHHHcccEEEEcccHHHHcccccEEEccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEcEEEcccccccccccccHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
cccEEEEEEEccccccccccccccccccHHHHccccccccccccccHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHccEEEEEccccccccccEEccccccccccccHHHHHHHHHccccHHcccccHHccccccccccccccccccccccccHHHcccccHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccHHccccccccccccccccHHEEEcccccccEEcEEEEEEEEcHEEEEcccccEEEEEHHccccccEEcccccHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHccHHHHHHccccEEEEEccccEEEEEcccHHHccccccccHHHHHcccccccHHHHHHHHHHHHHHcccccEcHHHHHHHHHHcHHHccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHccEEEEEEEEcccccccEEEEHcHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccc
mgtkrmranlgnedldklsappgfmsLTSFLLKKVENSEESCNSVAFAsasaqepvcanapsdmvdagtlkrslrnrpwilyeqsdnnqkesnfeqpveelssratlpkgvirgcpdcsnclkvtarwspegakndvleeapvfypteeefsDTLKYIASVRLKseeygicrivpppswkppclvkendiwkssKFVTQIQQIDglqnqyfsskaakiydnvnsnskrRRSLntglqngvggngctmnldearctegfesergpeftLETFKKYADDFKEQYFCtknidmtvdenplvfkkqgepsleniEGEYRRIIENPTEEIEVLYgenletgtfgsgfptvsnpceasdhqkylksgwnlnnlpmlpgsllssescktcnllvprlhvgmcFTSIYWKVEEHCLCSLyymhlgapkiwhsipqrYAVKFDAAAKkylptlsfkqskwhnrwvaslspsplksegvpvyrctqspgeFVLVFSgsyysgfdcgfncsesvnfapiewlphGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKhtsdnfmwrhvsGKDGILAKALKSRINSESNRRKYLcsssqsqrmdknfdytskrecniclydlhlsaafcpcspdiysCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHsyssrdglrpnsqaeeskqteykpldsakfngvgsdsfs
mgtkrmranlgnedldklsappGFMSLTSFLLKKVENSEESCNSVAFASASAQEPVCANAPSDMVDAGTLKRSLRNRPWILyeqsdnnqkesnFEQPVEElssratlpkgvirgcpdcsnCLKVTArwspegakndvlEEAPVfypteeefsdTLKYIASVRLKSEeygicrivpppswkppclVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYdnvnsnskrrrslntglqngvggngctMNLDEARCTEGfesergpeftLETFKKYADDFKEQYFCTKNIDMtvdenplvfkkqgepsleniegeyrriieNPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPtlsfkqskwhNRWVASlspsplksegVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLvkkhtsdnfmwrhvSGKDGILAKALKsrinsesnrrkylcsssqsqrmdknFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHSyssrdglrpnsqaeeskqteykpldsakfngvgsdsfs
MGTKRMRANLGNEDLDKLSAPPGFMSLTSFLLKKVENSEESCNSVAFASASAQEPVCANAPSDMVDAGTLKRSLRNRPWILYEQSDNNQKESNFEQPVEELSSRATLPKGVIRGCPDCSNCLKVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQRMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHSYSSRDGLRPNSQAEESKQTEYKPLDSAKFNGVGSDSFS
*****************************FL*********************************************RPWILY**************************KGVIRGCPDCSNCLKVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYD********************GGNGCTMNLDEARCTEG******PEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKK******ENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSP*PLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKAL**************************FDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHS**************************************
****************************************************************************************************************************************VLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARCTEGFES*********TFKKYADDFKEQYF************************ENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFP**********HQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGIL*********************************TSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWA****************************************GVGSDS**
********NLGNEDLDKLSAPPGFMSLTSFLLKKV*********VAFASASAQEPVCANAPSDMVDAGTLKRSLRNRPWILYEQSDN***************SRATLPKGVIRGCPDCSNCLKVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRI*******************DKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHSYSSR***************EYKPLDSAKFNGVGSDSFS
*GTKRMRANLGNEDLDKLSAPPGFMSLTSFLLKKV*************************************************************************************************AKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYF***A***************SLNTGLQNGVGGNGCTMNLDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQRMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHS***RD***P****EES**********************
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MGTKRMRANLGNEDLDKLSAPPGFMSLTSFLLKKVENSEESCNSVAFASASAQEPVCANAPSDMVDAGTLKRSLRNRPWILYEQSDNNQKESNFEQPVEELSSRATLPKGVIRGCPDCSNCLKVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQRMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYLHSYSSRDGLRPNSQAEESKQTEYKPLDSAKFNGVGSDSFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query727 2.2.26 [Sep-21-2011]
Q8GUI6 954 Probable lysine-specific no no 0.752 0.573 0.465 1e-142
Q5F3R2 1522 Lysine-specific demethyla yes no 0.532 0.254 0.327 7e-62
Q9UGL1 1544 Lysine-specific demethyla yes no 0.532 0.250 0.332 9e-62
Q80Y84 1544 Lysine-specific demethyla yes no 0.532 0.250 0.332 1e-61
Q6IQX0 1503 Lysine-specific demethyla no no 0.536 0.259 0.320 1e-60
Q9VMJ7 1838 Lysine-specific demethyla yes no 0.530 0.210 0.315 4e-57
Q3UXZ9 1690 Lysine-specific demethyla no no 0.530 0.228 0.310 4e-56
P29375 1690 Lysine-specific demethyla no no 0.530 0.228 0.308 1e-55
Q38JA7 1556 Lysine-specific demethyla no no 0.536 0.250 0.316 3e-55
Q30DN6 1545 Lysine-specific demethyla no no 0.536 0.252 0.313 6e-55
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 Back     alignment and function desciption
 Score =  505 bits (1300), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/559 (46%), Positives = 355/559 (63%), Gaps = 12/559 (2%)

Query: 123 KVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPP 182
           K+TARW+P  A   ++++AP+FYPT E+F D L YI  +R K+E YGICRIVPP +W+PP
Sbjct: 38  KITARWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPPVAWRPP 97

Query: 183 CLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGG 242
           C +KE  IW++SKF T+IQ ID LQN     +            KRRR    G       
Sbjct: 98  CPLKEKKIWENSKFPTRIQFIDLLQN-----REPIKKSTKTKKRKRRRISKIGYTRRKRD 152

Query: 243 NGCTMNLDEARCTEG-FESERGPEFTLETFKKYADDFKEQYFCTKNIDMT-VDENPLVFK 300
           +GC      +  +EG F  + GP+FTLE F+KY + FKE YF +++   +   EN     
Sbjct: 153 SGCDTASSGSSDSEGKFGFQTGPDFTLEEFQKYDEYFKECYFQSEDHPGSKASEN----- 207

Query: 301 KQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKS 360
           K+ +P ++++EGEY RI+E  T+E+EV YG +LET  FGSGFP        S+  +Y + 
Sbjct: 208 KKFKPKVKDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQC 267

Query: 361 GWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPK 420
           GWNLNNL  LPGS+L+ ESC    ++VP L+VGMCF++  W VE+H L S+ Y+H G PK
Sbjct: 268 GWNLNNLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPK 327

Query: 421 IWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGE 480
           +W+ IP  +A  F+   KK LP L  +Q    ++ V  LSP  LK EGVPVYR  Q  GE
Sbjct: 328 VWYGIPGNHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGE 387

Query: 481 FVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLGAA 540
           F+L F  +Y+SGF+CGFNC+E+VN AP++WL HGQNA+E Y +Q RK+S+SHDKLLLGAA
Sbjct: 388 FILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAA 447

Query: 541 REVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQRM 600
            E     WE+SL KK T     W+ V  +DG+L KA+K R+  E  R  +L      ++M
Sbjct: 448 MEATYCLWELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKM 507

Query: 601 DKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISE 660
           + +FD   +REC +C YDLH+SA+ C CSP+ ++CL H K LCSC   ++  L R+ + E
Sbjct: 508 EGDFDNKRERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDE 567

Query: 661 LNVLLEAVEGKLSAVYRWA 679
           L  L+ A+EG L A+  WA
Sbjct: 568 LWALVRALEGDLDAIDLWA 586
Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 Back     alignment and function description
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1 Back     alignment and function description
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query727
359480020 898 PREDICTED: probable lysine-specific deme 0.991 0.802 0.594 0.0
255582509803 transcription factor, putative [Ricinus 0.969 0.877 0.593 0.0
359488087 1271 PREDICTED: probable lysine-specific deme 0.951 0.544 0.565 0.0
356574834 1257 PREDICTED: probable lysine-specific deme 0.938 0.542 0.559 0.0
302143629 1178 unnamed protein product [Vitis vinifera] 0.907 0.560 0.562 0.0
356533690 1257 PREDICTED: probable lysine-specific deme 0.943 0.545 0.561 0.0
297744160787 unnamed protein product [Vitis vinifera] 0.815 0.753 0.599 0.0
255561935 1202 transcription factor, putative [Ricinus 0.947 0.573 0.561 0.0
449470236 1235 PREDICTED: probable lysine-specific deme 0.936 0.551 0.538 0.0
224062137550 jumonji domain protein [Populus trichoca 0.751 0.992 0.638 0.0
>gi|359480020|ref|XP_002272766.2| PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/738 (59%), Positives = 542/738 (73%), Gaps = 17/738 (2%)

Query: 1   MGTKRMRANLGNEDLDKLSAPPGFMSLTSFLLKKVENSEESCNSVAFASASAQEPVCANA 60
           MG + +        +D LS PPGF SLTSF LK++E+SEE+CNS+AF SA   +P   +A
Sbjct: 1   MGQEYVSICSTGNQVDDLSVPPGFASLTSFTLKRMEDSEETCNSMAFGSAFQPDPANMDA 60

Query: 61  PSDMVDAGTLKRSLRNRPWILYEQSDNNQKESNFEQPVEELSSRATLPKGVIRGCPDCSN 120
             D +D    KRSLR+RPWILY+Q D+ +++S+ +Q ++ L S+  LPKGVIRGC DCSN
Sbjct: 61  ACDPIDIAEFKRSLRHRPWILYDQCDHEEEDSDPKQ-IDNLHSKTYLPKGVIRGCSDCSN 119

Query: 121 CLKVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWK 180
           C KV+ARW PE A  D+LEEAPVF+PTEEEF DTLKYIAS+R ++E YG+CRIVPPPSW+
Sbjct: 120 CQKVSARWRPEDACTDILEEAPVFHPTEEEFKDTLKYIASLRPRAEPYGVCRIVPPPSWQ 179

Query: 181 PPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGV 240
           PPC +KE ++W  SKF TQIQ+ID L++Q   SK +   +N+N   KR  ++ +  Q+  
Sbjct: 180 PPCHIKEKNVWTRSKFPTQIQRIDELRDQCSKSKFSIFSENMNGRKKRSFTMGSEFQS-- 237

Query: 241 GGNGCTMNLDEARC--TEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLV 298
             NG  +  DEAR   T+GF+ E GPEFTLETFK YADDFK QYFC K+     D N  V
Sbjct: 238 -DNGYIITPDEARRYETQGFKFEPGPEFTLETFKNYADDFKGQYFCKKDEVADSDVNSTV 296

Query: 299 FKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYL 358
            +KQ EPSLENIEGEYRRI+ENPTEEIEVL+G +LETG FGSGFP VSN  + SDH +Y 
Sbjct: 297 SQKQWEPSLENIEGEYRRIVENPTEEIEVLHGADLETGVFGSGFPKVSNQEQMSDHAQYF 356

Query: 359 KSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGA 418
           +SGWNLNN P LPGSLL+ E+     +L PRLHVGMCF+S+ WKVEEH L SL YMHLGA
Sbjct: 357 ESGWNLNNTPKLPGSLLAFENYDIFRILQPRLHVGMCFSSLCWKVEEHHLYSLCYMHLGA 416

Query: 419 PKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSP 478
           PKIW+SIP RY  KF+AA KKY P LS  Q +   + V  LSPS LKSEG+P YRC Q P
Sbjct: 417 PKIWYSIPGRYRPKFEAAVKKYFPYLSATQPELLPKLVTQLSPSTLKSEGIPTYRCIQYP 476

Query: 479 GEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLLLG 538
            EFVL+F G+Y+SGFDCGFNC+E+VNFAP++WLPHGQN +ELY  QGR+TSISHDKLL G
Sbjct: 477 REFVLIFPGAYHSGFDCGFNCTEAVNFAPVDWLPHGQNTVELYCLQGRRTSISHDKLLFG 536

Query: 539 AAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQ 598
           AARE V+ QWE+SL+ K T D+  W+ + GKDGILA ALKSRI SE  RR+YLC+SSQS+
Sbjct: 537 AAREAVRAQWEVSLLGKSTLDHLRWKELCGKDGILASALKSRIKSEGRRREYLCTSSQSR 596

Query: 599 RMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEI 658
           +MDK+FD   KREC  C YDLHLSAA C CSPD Y+CLNH KQLCSC+W+ K FLFRYE+
Sbjct: 597 KMDKDFDSVRKRECWTCFYDLHLSAACCQCSPDKYACLNHAKQLCSCSWSAKTFLFRYEM 656

Query: 659 SELNVLLEAVEGKLSAVYRWAKDDLKMYLHSYSSRDGLRP-----NSQAEESKQTE---- 709
           S+L++L++A+EGKLS+VYRWA++DL + L    S D L+      N    ESKQ +    
Sbjct: 657 SKLDLLVQALEGKLSSVYRWAREDLGLALSRCVSNDQLKACGFVNNPSPTESKQEQKCQD 716

Query: 710 --YKPLDSAKFNGVGSDS 725
              K  D  + NG+  +S
Sbjct: 717 EVLKSQDVVEPNGIIENS 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582509|ref|XP_002532040.1| transcription factor, putative [Ricinus communis] gi|223528310|gb|EEF30356.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359488087|ref|XP_002266063.2| PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574834|ref|XP_003555549.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|302143629|emb|CBI22382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533690|ref|XP_003535393.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|297744160|emb|CBI37130.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561935|ref|XP_002521976.1| transcription factor, putative [Ricinus communis] gi|223538780|gb|EEF40380.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449470236|ref|XP_004152824.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] gi|449520389|ref|XP_004167216.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224062137|ref|XP_002300773.1| jumonji domain protein [Populus trichocarpa] gi|222842499|gb|EEE80046.1| jumonji domain protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query727
TAIR|locus:2025635 1209 PKDM7D [Arabidopsis thaliana ( 0.929 0.559 0.526 4.6e-192
TAIR|locus:2064910708 AT2G38950 [Arabidopsis thalian 0.572 0.587 0.501 3.4e-145
TAIR|locus:2128659 954 JMJ14 "JUMONJI 14" [Arabidopsi 0.785 0.598 0.459 1.7e-137
TAIR|locus:2196979 819 JMJ18 "Jumonji domain-containi 0.811 0.720 0.442 5.4e-134
TAIR|locus:2044697 806 MEE27 "maternal effect embryo 0.734 0.662 0.451 2.6e-125
UNIPROTKB|Q5F3R2 1522 KDM5B "Lysine-specific demethy 0.444 0.212 0.341 5.1e-65
ZFIN|ZDB-GENE-030131-5379 1483 kdm5ba "lysine (K)-specific de 0.383 0.188 0.361 3.2e-64
ZFIN|ZDB-GENE-030424-1 1522 kdm5bb "lysine (K)-specific de 0.368 0.176 0.368 6.3e-63
UNIPROTKB|F1NRC4 1510 KDM5B "Lysine-specific demethy 0.444 0.213 0.341 9.7e-63
UNIPROTKB|F1NUR9 1521 KDM5B "Lysine-specific demethy 0.444 0.212 0.341 1e-62
TAIR|locus:2025635 PKDM7D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1861 (660.2 bits), Expect = 4.6e-192, P = 4.6e-192
 Identities = 370/703 (52%), Positives = 480/703 (68%)

Query:     1 MGTKRMRANLGNEDLDKL-SAPPGFMSLTSFLLKKV--ENSEESCNSVAFASASAQEPVC 57
             MGT+ MR  +  ED D L S PPGF S  +F LK+V    + +   + A  S SA E   
Sbjct:     1 MGTELMRICV-KEDSDDLPSVPPGFESYATFTLKRVVPATTSDKAKTPAIESVSATEQAK 59

Query:    58 ANAPSDMVDAGTLKRSLRNRPWILYEQSDN------NQKESNFEQPVEELSSRATLPKGV 111
                 SD   A    R+LR RPWI +   D+      N   +  + P +    +  LPKGV
Sbjct:    60 MEVESDEAKAA---RALRRRPWINHSGCDDDGDCAANNDNAASQNPDQNCDVKPALPKGV 116

Query:   112 IRGCPDCSNCLKVTARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGIC 171
             +RGC +C +C KVTARW P+ A+   LE+APVFYP+EEEF DTL YIA +R ++E+YGIC
Sbjct:   117 VRGCEECKDCQKVTARWHPDEARRPDLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYGIC 176

Query:   172 RIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRS 231
             RIVPPPSWKPPC +KE  +W+ SKF T++Q++D LQN+    K +K+ + +    K+R+ 
Sbjct:   177 RIVPPPSWKPPCPLKEKQVWEGSKFTTRVQRVDKLQNRSSMKKISKLPNQMRK--KKRKC 234

Query:   232 LNTGLQNGVGGNG--CTMN--LDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKN 287
             +  G+ +   G G  C+ +  ++E   T GFE   GP FTL+ F+KYAD+FK QYF  K 
Sbjct:   235 MKMGMDSVTNGMGDPCSASTGMNELE-TFGFEP--GPGFTLKDFQKYADEFKAQYF--KK 289

Query:   288 IDMTVDENPLVFKKQG--EPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTV 345
              + + D+   V       EP+LE++EGEY RI++  TEEIEVLYG +LETG FGSGFP +
Sbjct:   290 SETSTDDKCKVDNSIDCWEPALEDVEGEYWRIVDKATEEIEVLYGADLETGVFGSGFPKI 349

Query:   346 SNPCEASDHQ-KYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVE 404
             S+   AS  + KY KSGWNLNN P LPGSLL  E      +LVP L++GMCF+S  W VE
Sbjct:   350 SSSHNASSSEDKYAKSGWNLNNFPRLPGSLLKYEGSDISGVLVPWLYIGMCFSSFCWHVE 409

Query:   405 EHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPL 464
             +H L SL YMH GAPK+W+ +  + AVK + A +K+LP L  +Q    ++ V  LSPS L
Sbjct:   410 DHHLYSLNYMHWGAPKLWYGVGGKDAVKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSKL 469

Query:   465 KSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQ 524
             K+ GVPV+RC Q  GEFVL F  +Y++GF+ GFNC+E+VN AP++WLPHGQ AIELY +Q
Sbjct:   470 KTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAIELYCQQ 529

Query:   525 GRKTSISHDKLLLGAAREVVKTQWEISLVKKHTSDNFMWRHVSGKDGILAKALKSRINSE 584
             GRKTSISHDKLLLGAAREVVK  WE++L++K+T DN  W+  S KDGILAK LK+RI+ E
Sbjct:   530 GRKTSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWKAFSAKDGILAKTLKARIDME 589

Query:   585 SNRRKYLCSSSQSQRMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCS 644
               RR++LC+SS + +M  NFD T++REC IC +DLHLSAA C CSP+ YSCL HVK+LCS
Sbjct:   590 RTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYSCLTHVKELCS 649

Query:   645 CAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRWAKDDLKMYL 687
             C W  K FLFRY+I ELNVL+EAVEGKLS+VYRWA+ DL + L
Sbjct:   650 CPWVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLAL 692
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0006486 "protein glycosylation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2064910 AT2G38950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128659 JMJ14 "JUMONJI 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196979 JMJ18 "Jumonji domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044697 MEE27 "maternal effect embryo arrest 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3R2 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5379 kdm5ba "lysine (K)-specific demethylase 5Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030424-1 kdm5bb "lysine (K)-specific demethylase 5Bb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRC4 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUR9 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query727
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 3e-33
smart0054542 smart00545, JmjN, Small domain found in the jumonj 9e-18
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 2e-15
pfam0237534 pfam02375, JmjN, jmjN domain 1e-13
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score =  123 bits (310), Expect = 3e-33
 Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 389 RLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQ 448
            L++GM  ++  W +E+  L S+ Y+H G PK+W+ IP  YA KF    K        +Q
Sbjct: 1   WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKF---EKVLSKHNGGEQ 57

Query: 449 SKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNF 505
                     +SP  L   G+PVYR  Q PGEFV  F G Y+  F+ GFN +E+VNF
Sbjct: 58  PDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|190295 pfam02375, JmjN, jmjN domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 727
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 100.0
KOG0958 690 consensus DNA damage-responsive repressor GIS1/RPH 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 100.0
smart0054542 JmjN Small domain found in the jumonji family of t 99.78
PF0237534 JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro 99.63
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.56
smart0055857 JmjC A domain family that is part of the cupin met 99.33
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 98.13
KOG2131427 consensus Uncharacterized conserved protein, conta 96.52
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 96.49
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 94.29
KOG1356889 consensus Putative transcription factor 5qNCA, con 93.82
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 80.43
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-74  Score=690.16  Aligned_cols=531  Identities=37%  Similarity=0.602  Sum_probs=422.3

Q ss_pred             cCCCCCCCCCCCCCccccCChhhhhCHHHHHHHHHhhccccCeeEEcCCCCCCCCCcccccccccCCeeeee-eeeeccc
Q 039459          128 WSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQ-IQQIDGL  206 (727)
Q Consensus       128 ~~p~~~~~~~l~e~Pvf~PT~eEF~Dpl~YI~~I~~~a~~yGIcKIVPP~~W~Pp~~~~~~~~~~~~~F~tr-vQ~l~~L  206 (727)
                      +.+..+.+......+.+.+....|.+...|+..++..++.+|+|.++||..|.+++++..+..|...+|.++ +|.++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (904)
T KOG1246|consen   77 DLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQREVEFIDYP  156 (904)
T ss_pred             hhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCcccccccch
Confidence            334444455566667777777899999999999999999999999999999999999999999999999999 8888877


Q ss_pred             cccccchhhhh-hhhc-cccccccccccccCcccCCCCC-CccCC--cccccccCCcccccCC-CCCHHHHHHHHHHHHH
Q 039459          207 QNQYFSSKAAK-IYDN-VNSNSKRRRSLNTGLQNGVGGN-GCTMN--LDEARCTEGFESERGP-EFTLETFKKYADDFKE  280 (727)
Q Consensus       207 ~~r~~~~k~~~-~~~~-~~~~~kr~~~~~~~~~~~~~~~-~~~~~--~~e~~~~e~fgf~~g~-~~tl~~F~~~A~~fk~  280 (727)
                      +.....+.... +..- ...+.++..+..++.+....+. .+..+  ..+....+.|||++|. .||+..|+++|+.|+.
T Consensus       157 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~  236 (904)
T KOG1246|consen  157 QCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKK  236 (904)
T ss_pred             hhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhc
Confidence            66554443211 0000 0001111111222222111111 11111  1112224789999995 9999999999999999


Q ss_pred             HhhccCCCCCCCCCCccccccCCCCChHHHHHHHHhhccCCCCceeeeeccCCCCCCCCCCCCCCCCCCCC-cchhhhhc
Q 039459          281 QYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEA-SDHQKYLK  359 (727)
Q Consensus       281 ~~f~~~~~~~~~~~n~~~~~~~~~~s~~~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFP~~~~~~~~-~~~~~y~~  359 (727)
                      .||..+. ..             .++++++|++||++|......++|+||+|+.+..+|||||........ ...++|..
T Consensus       237 ~~~~~~~-~~-------------~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~  302 (904)
T KOG1246|consen  237 DYFPKSK-NS-------------PDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSN  302 (904)
T ss_pred             ccccccc-CC-------------CCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhcc
Confidence            9994332 11             133789999999999998889999999999999999999975433222 46689999


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCCCCcccceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHH
Q 039459          360 SGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKK  439 (727)
Q Consensus       360 ~~WNLnnlp~~~~SlL~~~~~~I~Gvt~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~  439 (727)
                      ++|||||+|.+++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++||++|++
T Consensus       303 s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~  382 (904)
T KOG1246|consen  303 SGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNK  382 (904)
T ss_pred             CcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCchhhhhchhhhcccccccCccccccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCCcccchhHHHH
Q 039459          440 YLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIE  519 (727)
Q Consensus       440 ~~p~~~~~~pd~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~Wl~~g~~a~~  519 (727)
                      ..|+++..+||++++++++++|..|..+||||++++|+|||||||||++||+|||+|||++|+|||||.+||++|+.+++
T Consensus       383 ~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~  462 (904)
T KOG1246|consen  383 LSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAE  462 (904)
T ss_pred             hCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHhhhhhhHHHHhhh-hcCccccchhcccchhhHHHHHHHHHHHHHHhhHHhhhcccccc
Q 039459          520 LYREQGRKTSISHDKLLLGAAREVVKTQWEISLVK-KHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQ  598 (727)
Q Consensus       520 ~y~~~~~~~~~s~d~LL~~~A~~~~~~~~~~~~l~-~~~~~~~~w~~~~~~~~~l~~~l~~~~~~E~~~re~l~~~~~~~  598 (727)
                      +|+...+.++|||++|++.+|.+.+...+.+.+.. .+......|+..+...+...-.+..+   |+.+.+.+.      
T Consensus       463 ~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------  533 (904)
T KOG1246|consen  463 AYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESLP------  533 (904)
T ss_pred             HHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhcc------
Confidence            99999999999999999999998765544333211 11111112211111111111111111   222222211      


Q ss_pred             ccccccCCCCCcccccccccccccccccCccCCccccccchhhhcCCCCCccEEEEecCHHHHHHHHHHHHhhhhchhhh
Q 039459          599 RMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRW  678 (727)
Q Consensus       599 k~~~~~d~~~~~~C~~Ck~~~flS~V~C~c~~~~~~CL~Ha~~lC~C~~~~~~llyRy~~~eL~~lv~~l~~~~~~~~~w  678 (727)
                            |+..+++|..|+++||++++.|+|.+.+..||.|..++|+|....++++|||++++|..++.+++++...+..|
T Consensus       534 ------~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~~~~~~~~  607 (904)
T KOG1246|consen  534 ------DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLHELSKLPW  607 (904)
T ss_pred             ------chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhhhhhcchh
Confidence                  32338999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccc
Q 039459          679 AKDDLKMYL  687 (727)
Q Consensus       679 ~~~~~~~~~  687 (727)
                      ..++.+..-
T Consensus       608 ~~~~~~~~~  616 (904)
T KOG1246|consen  608 FGRVDGALP  616 (904)
T ss_pred             hhhhhhhhc
Confidence            988887643

>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00545 JmjN Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query727
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 4e-24
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 4e-24
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 5e-24
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 5e-24
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 8e-24
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 9e-24
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 9e-24
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 1e-23
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 1e-23
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 1e-23
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 1e-22
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 3e-22
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%)
Query: 362 WNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKI 421
           WNL +L  +   L          +  P L+ GM  T+  W  E+  L S+ Y+HLG PK 
Sbjct: 152 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 211
Query: 422 WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEF 481
           W+ +P  +  + +  A++  P  S     +    VA +SP+ LK  G+P  R TQ  GEF
Sbjct: 212 WYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEF 271
Query: 482 VLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNA 517
           ++ F   Y++GF+ GFNC+E++NFA   W+ +G+ A
Sbjct: 272 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 307
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query727
3opt_A373 DNA damage-responsive transcriptional repressor R; 1e-70
3dxt_A354 JMJC domain-containing histone demethylation PROT; 1e-63
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 4e-58
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 1e-55
2ox0_A381 JMJC domain-containing histone demethylation PROT; 3e-52
2ox0_A381 JMJC domain-containing histone demethylation PROT; 7e-10
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 9e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
 Score =  234 bits (597), Expect = 1e-70
 Identities = 90/402 (22%), Positives = 157/402 (39%), Gaps = 43/402 (10%)

Query: 136 DVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVK-ENDIWKSS 194
           +++   PVF PT E+F D   Y  ++     + G+ +++PP  WK    +    +  +  
Sbjct: 9   EIVGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETLQKI 68

Query: 195 KFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARC 254
           K  + IQQ        F  +  +     N    +  S +            +     ++ 
Sbjct: 69  KIKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKS 128

Query: 255 TEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEY 314
           T+         F ++ F+++  ++       +N                   L+ +E  Y
Sbjct: 129 TKLKLKNFESSFNIDDFEQFRTEYTIDLSDFQN----------------TERLKFLEEYY 172

Query: 315 RRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSL 374
            + +   T     +YG +      GS FP   N              WN+  LP    ++
Sbjct: 173 WKTLNFTT----PMYGADTP----GSIFPEGLNV-------------WNVAKLP----NI 207

Query: 375 LSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFD 434
           L     K   +    L+ G+   S  W +E+  L S+ Y+H GAPK W+SIPQ    KF 
Sbjct: 208 LDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFY 267

Query: 435 AAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFD 494
              ++  P  +    ++    +   SP  L+  G+         GEF++ +   Y++GF+
Sbjct: 268 KFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFN 327

Query: 495 CGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKLL 536
            G+N +ESVNFA  EWLP G+ A + +        I   KL 
Sbjct: 328 YGYNLAESVNFALEEWLPIGKKAGKCHCISDS-VEIDVKKLA 368
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query727
2ox0_A381 JMJC domain-containing histone demethylation PROT; 100.0
3dxt_A354 JMJC domain-containing histone demethylation PROT; 100.0
3opt_A373 DNA damage-responsive transcriptional repressor R; 100.0
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 100.0
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 100.0
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 100.0
2ypd_A392 Probable JMJC domain-containing histone demethyla 98.16
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 97.74
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 97.72
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 97.7
3kv9_A397 JMJC domain-containing histone demethylation prote 97.69
3kv5_D488 JMJC domain-containing histone demethylation prote 97.65
2yu1_A451 JMJC domain-containing histone demethylation PROT; 97.6
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 97.53
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 97.25
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 97.02
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 96.28
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 95.81
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 86.21
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-88  Score=733.81  Aligned_cols=317  Identities=28%  Similarity=0.510  Sum_probs=279.4

Q ss_pred             CCCCCCCccccCChhhhhCHHHHHHHHHhh-ccccCeeEEcCCCCCCCCCcccccccccCCeeeeeeeeeccccccccch
Q 039459          135 NDVLEEAPVFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSS  213 (727)
Q Consensus       135 ~~~l~e~Pvf~PT~eEF~Dpl~YI~~I~~~-a~~yGIcKIVPP~~W~Pp~~~~~~~~~~~~~F~trvQ~l~~L~~r~~~~  213 (727)
                      .-.-.++||||||+|||+||++||++|+++ |++|||||||||++|+|++.+++   +++++|.+++|++...+.+    
T Consensus        30 ~~~~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~GI~KIIPP~~W~p~~~~~~---~~~~~i~~piqQ~~~g~~g----  102 (381)
T 2ox0_A           30 LNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDD---IDDLVIPAPIQQLVTGQSG----  102 (381)
T ss_dssp             CSTTCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGSEEEECCCTTCCSCSCSTT---CTTCEESSCEEEEEEEETT----
T ss_pred             CCCCCCCceEcCCHHHHhCHHHHHHHHHhccccccCceeecCCccCCCccccch---hhhcccCCcceeeecCCCc----
Confidence            344568999999999999999999999998 78999999999999999998754   2578999999998643211    


Q ss_pred             hhhhhhhccccccccccccccCcccCCCCCCccCCcccccccCCcccccCCCCCHHHHHHHHHHHHHHhhccCCCCCCCC
Q 039459          214 KAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVD  293 (727)
Q Consensus       214 k~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~e~~~~e~fgf~~g~~~tl~~F~~~A~~fk~~~f~~~~~~~~~~  293 (727)
                          +..+                                    +++ +++.|||.+|+++|++++   ++.+.      
T Consensus       103 ----~~~~------------------------------------~~~-~~k~~tl~~f~~~a~~~~---~~~p~------  132 (381)
T 2ox0_A          103 ----LFTQ------------------------------------YNI-QKKAMTVREFRKIANSDK---YCTPR------  132 (381)
T ss_dssp             ----EEEE------------------------------------EEE-ECCCEEHHHHHHHHHSTT---TSCCC------
T ss_pred             ----cccc------------------------------------ccc-cccccCHHHHHHHhcccc---cCCCc------
Confidence                1111                                    111 256799999999998643   22221      


Q ss_pred             CCccccccCCCCChHHHHHHHHhhccCCCCceeeeeccCCCCCCCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCC
Q 039459          294 ENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGS  373 (727)
Q Consensus       294 ~n~~~~~~~~~~s~~~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFP~~~~~~~~~~~~~y~~~~WNLnnlp~~~~S  373 (727)
                                ..+.++||++|||+|+.    ++|+||+|++    ||+|+..             .++|||||||.+.++
T Consensus       133 ----------~~~~~~lE~~fWr~v~~----~~~~YgaD~~----gS~f~~~-------------~~~WNL~~Lp~ll~~  181 (381)
T 2ox0_A          133 ----------YSEFEELERKYWKNLTF----NPPIYGADVN----GTLYEKH-------------VDEWNIGRLRTILDL  181 (381)
T ss_dssp             ----------CSSHHHHHHHHHHHTTS----SCCEEEEEEE----CCCSCTT-------------CCSSCTTCCCCGGGH
T ss_pred             ----------cCCHHHHHHHHHhhCCc----CCceeecCCC----cccCCCC-------------CCCCchhhhhhHHHH
Confidence                      24689999999999974    4789999998    7777532             479999999999999


Q ss_pred             CCcccCCCCCCcccceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhhchhhhc
Q 039459          374 LLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHN  453 (727)
Q Consensus       374 lL~~~~~~I~Gvt~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~~pd~L~  453 (727)
                      ||++.+.+|+|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++++|+++.+|++||+
T Consensus       182 ll~~~~~~I~GVn~P~LYiGm~~S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~P~~~~~~~~~L~  261 (381)
T 2ox0_A          182 VEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLR  261 (381)
T ss_dssp             HHHHHCCCCBTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGG
T ss_pred             HHHhcCCCCCCcccceEEeeccccCcCceecCCcceeeEEeecCCceEEEecCHHHHHHHHHHHHHhChhhhhcchHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCccccccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCCcccchhHHHHHHHhcCCCCCccHH
Q 039459          454 RWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHD  533 (727)
Q Consensus       454 h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d  533 (727)
                      |++++++|+.|+++||||++++|+|||||||||+|||+|||+||||+||||||+++|+++|..|.+|+|... ...|+|+
T Consensus       262 h~~~~isP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a~~c~c~~~-~v~i~~d  340 (381)
T 2ox0_A          262 HKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKD-MVKISMD  340 (381)
T ss_dssp             GSCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHCCCCCSSTT-CCCCCCH
T ss_pred             ccccccCHHHHHHCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHHhHhhhhccccCC-ceeecHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988754 5678999


Q ss_pred             HHHHHHH
Q 039459          534 KLLLGAA  540 (727)
Q Consensus       534 ~LL~~~A  540 (727)
                      .|+-++-
T Consensus       341 ~~~~~~~  347 (381)
T 2ox0_A          341 VFVRKFQ  347 (381)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9877654
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query727
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 97.16
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 96.9
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.16  E-value=0.0005  Score=68.54  Aligned_cols=117  Identities=11%  Similarity=0.087  Sum_probs=80.8

Q ss_pred             ccceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhh----chhhhcccccccCc
Q 039459          386 LVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFK----QSKWHNRWVASLSP  461 (727)
Q Consensus       386 t~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~----~pd~L~h~~~~isP  461 (727)
                      ...++++|..++.+.+|.+.++  .++.+-.| .|.|+..|+.+...+       ++.....    .+..+....   --
T Consensus       122 ~~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~  188 (319)
T d1vrba1         122 SKAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP-------MQHYDLSEAPYYPDDLQSYW---KG  188 (319)
T ss_dssp             EEEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC-------SSCEECC----CCHHHHHHC---CS
T ss_pred             ceeEEEecCCCCCCccccCCCc--eeEEeecc-eEEEEEeCCcccccc-------ccCcccccCccccccccccc---hh
Confidence            3456888999999999998764  45556677 799999998763321       1100000    000000000   00


Q ss_pred             cccccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCCcccchh
Q 039459          462 SPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQ  515 (727)
Q Consensus       462 ~~L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~Wl~~g~  515 (727)
                      ......+.+.+.++++|||.++.=+|-+|.+.|.|-+++-+|||..++|.++-.
T Consensus       189 ~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~  242 (319)
T d1vrba1         189 DPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLML  242 (319)
T ss_dssp             CCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHH
T ss_pred             hchhhhcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHHH
Confidence            112345678899999999999999999999999999999999999999887643
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure