Citrus Sinensis ID: 039460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLPRKTLQQTKISEGK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccccccccEEEcccccccEEEcccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccccccccccccccEccEEcccEEEEEEccHHHccEEEccccccccccccccccHHHHHHcccEEEcccccccccccHHHcccccccEEEcccccccccEccEEEHHHHHccccccHEccccccccHHHHHHHHHHHHHcccccHcccccccccccc
Coil and Loop (DISEMBL)
CLEQERSALIQLKHFFNDNQRLQNWadaandenysnccQWEAVEKAtyecslftpfqqlesldlignnivgcveneglgrlsrlsnlkflrldfnsfnnsifsslgglsslrclslrsnrlngsvVIKVFWFDildenglpfLEQTANRLSLESIDCIQDLIylggnlprktlqqTKISEGK
Flexible Loop (DISEMBL)
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLggnlprktlqqtkisegk
Low Complexity Region (SEG)
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDfnsfnnsifsslgglsslrclslrsnrlngsVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLPRKTLQQTKISEGK
Disordered region (IsUnstruct)
********LIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNL**************
Disordered Region (DISOPRED)
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLPRKTLQQTKIS***
Disordered Region (DISEMBL)
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLPRKTL*********
Disordered Region (DISPRO)
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLP*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLPRKTLQQTKISEGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q94AG2	625	Somatic embryogenesis rec	no	no	0.346	0.100	0.477	4e-05
Q8W4S5	614	Probable LRR receptor-lik	no	no	0.719	0.213	0.301	5e-05
Q9LT96	946	Probable leucine-rich rep	no	no	0.516	0.099	0.327	0.0002
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.637	0.184	0.316	0.0003
Q9FK10	601	Probable inactive recepto	no	no	0.631	0.191	0.272	0.0003
Q9C9H7	847	Receptor-like protein 12	no	no	0.824	0.177	0.284	0.0005
Q9XIB6	847	Pollen-specific leucine-r	no	no	0.373	0.080	0.361	0.0007
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.362	0.107	0.385	0.0008

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 59  LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118
           L SLDL  N+  G +  E LG+LS+L   +FLRL+ NS   SI  SL  +++L+ L L +
Sbjct: 119 LVSLDLYLNSFSGPIP-ESLGKLSKL---RFLRLNNNSLTGSIPMSLTNITTLQVLDLSN 174

Query: 119 NRLNGSV 125
           NRL+GSV
Sbjct: 175 NRLSGSV 181

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8W4S5|Y5371_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana GN=At5g63710 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 5   ERSALIQLKHFFNDNQRLQNWADAANDENYS---NCCQWEAVEKATYECSLFT------- 54
           E  AL+QL+   ND+     W        YS     C+ ++V       S FT       
Sbjct: 53  EGGALLQLRDSLNDSSNRLKWTRDFVSPCYSWSYVTCRGQSVVALNLASSGFTGTLSPAI 112

Query: 55  -PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113
              + L +L+L  N++ G + +     L  + NL+ L L  NSF+ SI +S   LS+L+ 
Sbjct: 113 TKLKFLVTLELQNNSLSGALPDS----LGNMVNLQTLNLSVNSFSGSIPASWSQLSNLKH 168

Query: 114 LSLRSNRLNGSVVIKVFWFDILDENG 139
           L L SN L GS+  + F     D +G
Sbjct: 169 LDLSSNNLTGSIPTQFFSIPTFDFSG 194

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LT96|Y5977_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 16/110 (14%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLR 117
           +L++LDL GN  +       +G L +L+   FL L   +FN  I  S+G L  L  LSL 
Sbjct: 93  ELQTLDLTGNPELSGPLPANIGNLRKLT---FLSLMGCAFNGPIPDSIGNLEQLTRLSLN 149

Query: 118 SNRLNGSV------VIKVFWFDILD---ENGLPFLEQTANRLSLESIDCI 158
            N+ +G++      + K++WFDI D   E  LP     ++  SL  +D +
Sbjct: 150 LNKFSGTIPASMGRLSKLYWFDIADNQLEGKLP----VSDGASLPGLDML 195

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 5   ERSALIQLK-HFFNDNQRLQNWADAANDENYSNCCQWEAV----EKATYECSL------- 52
           E  AL  L+ +  + N  LQ+W     D    N C W  V    E +     L       
Sbjct: 32  EGDALHSLRANLVDPNNVLQSW-----DPTLVNPCTWFHVTCNNENSVIRVDLGNADLSG 86

Query: 53  -FTP----FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGG 107
              P     + L+ L+L  NNI G V ++    L  L+NL  L L  NSF   I  SLG 
Sbjct: 87  QLVPQLGQLKNLQYLELYSNNITGPVPSD----LGNLTNLVSLDLYLNSFTGPIPDSLGK 142

Query: 108 LSSLRCLSLRSNRLNGSVVIKV 129
           L  LR L L +N L G + + +
Sbjct: 143 LFKLRFLRLNNNSLTGPIPMSL 164

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FK10|Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 28/143 (19%)

Query: 1   CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVE---------------- 44
            +++++  L+Q  +  N +  L NW+ +      S C +W  V                 
Sbjct: 22  TIKEDKHTLLQFVNNINHSHSL-NWSPS-----LSICTKWTGVTCNSDHSSVDALHLAAT 75

Query: 45  --KATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF 102
             +   E S+      L  L L  NNI G         L  L NL  L+LDFN F+  + 
Sbjct: 76  GLRGDIELSIIARLSNLRFLILSSNNISGTFPTT----LQALKNLTELKLDFNEFSGPLP 131

Query: 103 SSLGGLSSLRCLSLRSNRLNGSV 125
           S L     L+ L L +NR NGS+
Sbjct: 132 SDLSSWERLQVLDLSNNRFNGSI 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 1   CLEQERSALIQLKHFFNDNQR---LQNWADAANDENYSNCCQWEAV---EKATYECSLFT 54
           C + +R AL++ +  F  N     +  W    N    ++CC W  V   +K+    SL  
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKS--TDCCLWNGVTCNDKSGQVISLDI 91

Query: 55  P----------------FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFN 98
           P                 Q L  LDL   N+ G + +     L  LS+L  + L FN F 
Sbjct: 92  PNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSS----LGNLSHLTLVNLYFNKFV 147

Query: 99  NSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCI 158
             I +S+G L+ LR L L +N L G +   +     L       LE  +NRL  +  D I
Sbjct: 148 GEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVN-----LELFSNRLVGKIPDSI 202

Query: 159 QDL 161
            DL
Sbjct: 203 GDL 205

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
           + L  +   GNN+ GC  NE    +  L+N+       N F  S+ S+L GL+S+  L L
Sbjct: 249 KNLNEIVFTGNNLTGCFPNE----IGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDL 304

Query: 117 RSNRLNGSVVIK 128
             N+L G VV K
Sbjct: 305 SHNKLTGFVVDK 316

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLR 117
           +L SLDL  NN+ G + +     L RL  L+FLRL+ NS +  I  SL  + +L+ L L 
Sbjct: 117 ELVSLDLYLNNLSGPIPST----LGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLS 172

Query: 118 SNRLNGSVVI 127
           +N L G + +
Sbjct: 173 NNPLTGDIPV 182

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
224120284	929	predicted protein [Populus trichocarpa]	0.791	0.155	0.385	1e-20
224120450	935	predicted protein [Populus trichocarpa]	0.664	0.129	0.423	1e-19
224142499	436	predicted protein [Populus trichocarpa]	0.681	0.284	0.417	1e-18
224107431	173	predicted protein [Populus trichocarpa]	0.670	0.705	0.418	8e-17
224144186	973	predicted protein [Populus trichocarpa]	0.675	0.126	0.401	9e-17
224145105	280	predicted protein [Populus trichocarpa]	0.675	0.439	0.407	9e-17
224142513	290	predicted protein [Populus trichocarpa]	0.681	0.427	0.372	2e-16
255581263	912	serine-threonine protein kinase, plant-t	0.521	0.104	0.450	4e-16
224142721	926	predicted protein [Populus trichocarpa]	0.675	0.132	0.414	6e-16
224073949	280	predicted protein [Populus trichocarpa]	0.675	0.439	0.407	2e-15

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 30/174 (17%)

Query: 1   CLEQERSALIQLKHFFN--DNQRLQNWADAANDENYSNCCQWEAVEKAT----------- 47
           CLE+ER AL+Q+K  F+  +     +W   AN      CC+W+ V+  +           
Sbjct: 28  CLEEERVALLQIKDAFSYPNGSFPHSWGRDAN------CCEWKQVQCNSTTLRVVKIDLS 81

Query: 48  -----------YECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS 96
                         SLF PF +L +L+L GN I GC+ENEG  RLS L NL+ L L  N 
Sbjct: 82  FSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERLSVLGNLEILELGQNK 141

Query: 97  FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRL 150
           FN+SIFSSLGGLSSL+ LSL +N + G++ ++    ++L  + L +L+   NR 
Sbjct: 142 FNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGEDEVLKMSNLEYLDLGGNRF 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120450|ref|XP_002331051.1| predicted protein [Populus trichocarpa] gi|222872981|gb|EEF10112.1| predicted protein [Populus trichocarpa]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 80/151 (52%), Gaps = 30/151 (19%)

Query: 1   CLEQERSALIQLKHFFN--DNQRLQNWADAANDENYSNCCQWEAVE-------------- 44
           CL++ERSAL+++K  FN      LQ+W   A+      CC W+ V+              
Sbjct: 12  CLDEERSALLRIKSSFNYPSGTFLQSWGKVAD------CCSWKGVDCNFTTGRVVQLDLS 65

Query: 45  --------KATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS 96
                         SLF PFQ+L+ LDL GN IVGCVENEG  RLS L +L FL L  N 
Sbjct: 66  SKREEGLGDLYLNVSLFRPFQELQYLDLSGNFIVGCVENEGFERLSGLDSLVFLDLGVNK 125

Query: 97  FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI 127
           F+N I SSLGGLS L  L L  N+L G + +
Sbjct: 126 FDNRILSSLGGLSCLTTLYLDGNQLKGEISV 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 81/158 (51%), Gaps = 34/158 (21%)

Query: 1   CLEQERSALIQLKHFFNDNQR-----LQNWADAANDENYSNCCQWEAV------------ 43
           CLE+ER AL+Q+K  F D+       L +W   A       CC W+ V            
Sbjct: 26  CLEEERIALLQIKTSFGDHPNDIASPLFSWGKDAL------CCSWKRVTCSNSTTRRVIE 79

Query: 44  -----------EKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRL 92
                      E      S+F PFQ+L  LDL GN I GCV NEG  RLSRL+ L+ L L
Sbjct: 80  INLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIAGCVANEGFERLSRLAKLEVLLL 139

Query: 93  DFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130
             N FNNSI SS+ GLSSL+ L+L  N+L GS+  K F
Sbjct: 140 SDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKEF 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107431|ref|XP_002333512.1| predicted protein [Populus trichocarpa] gi|222837050|gb|EEE75429.1| predicted protein [Populus trichocarpa]

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 80/153 (52%), Gaps = 31/153 (20%)

Query: 1   CLEQERSALIQLKHFFN-DNQRLQNWADAANDENYSNCCQWE------------AVEKAT 47
           CLE+ER AL+Q+K   N  +  L +W   A       CC WE             VE   
Sbjct: 25  CLEEERIALLQIKTSLNLTSSPLLSWGKDAL------CCSWEGVTCSNSTTTRRVVEIHL 78

Query: 48  Y------------ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN 95
           Y              S+F PFQ+L+ LDL  N I  CV NEG  RLSRL+ L+ L L  N
Sbjct: 79  YYTRDWSMGDWYLNASIFLPFQELKVLDLGANRIACCVANEGFERLSRLAKLEVLYLSLN 138

Query: 96  SFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK 128
           +FNNSI SS+ GLSSL+ L+L  N+L GS+  K
Sbjct: 139 NFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 80/152 (52%), Gaps = 29/152 (19%)

Query: 1   CLEQERSALIQLKHFFN--DNQRLQNWADAANDENYSNCCQWEAV------EKATY---- 48
           CLE+ER AL+ LK   N  +   L +W  A     ++NCC WE +       + T     
Sbjct: 25  CLEEERIALLHLKDSLNYPNGTSLPSWRIA-----HANCCDWERIVCNSSTGRVTLLDLL 79

Query: 49  ------------ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS 96
                         SLF PFQQL +L L GN I G VEN+G   L +LSNL+ L L +NS
Sbjct: 80  GVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGSELQKLSNLEILYLGYNS 139

Query: 97  FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK 128
           F+N+I S + GL SL+ L L  NRL G + +K
Sbjct: 140 FDNTILSFVEGLPSLKSLYLNYNRLEGLIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145105|ref|XP_002336200.1| predicted protein [Populus trichocarpa] gi|222832534|gb|EEE71011.1| predicted protein [Populus trichocarpa]

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 80/152 (52%), Gaps = 29/152 (19%)

Query: 1   CLEQERSALIQLKHFFN--DNQRLQNWADAANDENYSNCCQWEAVE------KAT----- 47
           CLE+ER AL+ LK   N  +   L +W  A      ++CC WE++       + T     
Sbjct: 25  CLEEERIALLHLKDSLNYPNGTSLPSWIKAD-----AHCCDWESIGCNSSTGRVTELDLW 79

Query: 48  -----------YECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS 96
                         SLF PFQQL +L L GN I G VEN+G   L +LSNL+ L L +NS
Sbjct: 80  SVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGYELQKLSNLEILDLGYNS 139

Query: 97  FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK 128
           FNNSI S + GL SL+ L L  NRL G + +K
Sbjct: 140 FNNSILSFVEGLPSLKSLYLDYNRLEGLIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142513|ref|XP_002324601.1| predicted protein [Populus trichocarpa] gi|222866035|gb|EEF03166.1| predicted protein [Populus trichocarpa]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 82/169 (48%), Gaps = 45/169 (26%)

Query: 1   CLEQERSALIQLKHFFNDNQR----LQNWADAANDENYSNCCQWEAV------------- 43
           CLE+ER AL+Q+K    D       L +W + A       CC W  V             
Sbjct: 25  CLEEERIALLQIKTSMVDPNHMGSPLLSWGEDAL------CCNWAGVTCDSITGRVIVIF 78

Query: 44  -----------EKATYE-----------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRL 81
                       K  ++            ++F PFQ+L +L L  N+I GCV NEG  RL
Sbjct: 79  LHNARGWFIDPSKGVWDRNASMGDWYLNATMFLPFQELNTLGLSNNDIAGCVPNEGFERL 138

Query: 82  SRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130
           SRL+ L+ L L  N+FNNSI SS  GLSSL+ + L SN+L GS+ IK F
Sbjct: 139 SRLTKLESLDLGLNNFNNSILSSFKGLSSLKHIYLESNQLKGSIDIKEF 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 27/122 (22%)

Query: 1   CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYE----------- 49
           CL++ER+AL+QLK FF+    LQ W  A   E+  +CCQWE VE ++             
Sbjct: 23  CLDKERAALLQLKPFFDSTLALQKWLGA---EDNLDCCQWERVECSSITGRVTRLDLDTT 79

Query: 50  ------------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNS 96
                        SLF PF++L+SL L GN+IV CVENEG  RLS RLS+L+ L L +NS
Sbjct: 80  RAYQSSRNWYLNASLFLPFEELKSLSLKGNSIVDCVENEGFERLSTRLSSLEVLDLSYNS 139

Query: 97  FN 98
           FN
Sbjct: 140 FN 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 79/152 (51%), Gaps = 29/152 (19%)

Query: 1   CLEQERSALIQLKHFFN--DNQRLQNWADAANDENYSNCCQWEAV------EKAT----- 47
           CLE+ER AL+ LK   N  +   L +W  A     ++NCC WE +       + T     
Sbjct: 25  CLEEERIALLHLKDALNYPNGTSLPSWRIA-----HANCCDWERIVCNSSTGRVTELYLG 79

Query: 48  -----------YECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS 96
                         SLF PFQQL  L L GN I G VE +G   L +LSNL+ L L+ NS
Sbjct: 80  STRNEELGDWYLNASLFLPFQQLNILYLWGNRIAGWVEKKGGYELQKLSNLEILDLESNS 139

Query: 97  FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK 128
           FNNSI S + GL SL+ L L  NRL GS+ +K
Sbjct: 140 FNNSILSFVEGLPSLKSLYLDYNRLEGSIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073949|ref|XP_002335892.1| predicted protein [Populus trichocarpa] gi|222836248|gb|EEE74669.1| predicted protein [Populus trichocarpa]

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 79/152 (51%), Gaps = 29/152 (19%)

Query: 1   CLEQERSALIQLKHFFN--DNQRLQNWADAANDENYSNCCQWEAV------EKATY---- 48
           CLE+ER AL+ LK   N  +   L +W  A     ++NCC WE +       + T     
Sbjct: 25  CLEEERIALLHLKDSLNYPNGTSLPSWRIA-----HANCCDWERIVCNSSTGRVTLLDLL 79

Query: 49  ------------ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS 96
                         SLF PFQQL  LDL  N I G VEN+G   L +LSNL+ L L++NS
Sbjct: 80  GVRNEELGDWYLNASLFLPFQQLNILDLWHNRIAGWVENKGGYELQKLSNLEILDLEYNS 139

Query: 97  FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK 128
           FNNSI S +  L SL+ L L  NRL G + +K
Sbjct: 140 FNNSILSFVERLPSLKSLYLDYNRLEGLIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.230	0.043	0.326	0.00049
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.263	0.052	0.387	0.00067

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 79 (32.9 bits), Expect = 0.00049, Sum P(3) = 0.00049
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query:     1 CLEQERSALIQLKHFFNDNQRLQNWA-DAA----NDENYSNCCQWEAVE 44
             C+E+ER AL++LK +     +  +W  D+      ++  SNCC+WE ++
Sbjct:    27 CIEKERKALLELKKYMIS--KTADWGLDSVLPTWTNDTKSNCCRWEGLK 73

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 77 (32.2 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query:    43 VEKATYECSLFTPFQQLESLDLIGNNIVGCVEN-EGLGRLSRLSNLKFL 90
             +E +    SL  PF+++ SLDL  + + G V++ EG   L RL NL+ L
Sbjct:    78 LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQIL 126

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
            + L+S++L GN+I G +       L  +++L+ L L +NSFN SI  SLG L+SLR L+
Sbjct: 441 LRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 116 LRSNRLNGSV 125
           L  N L+G V
Sbjct: 497 LNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 59  LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118
           LE+LDL  N + G + N+    +   S+LK L L  N     I +SL  L+SL  L+L S
Sbjct: 142 LETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 119 NRLNGSV 125
           N+L G +
Sbjct: 198 NQLVGQI 204

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 54  TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113
           T    LE L L  N +VG +  E    L ++ +LK++ L +N+ +  I   +GGL+SL  
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 114 LSLRSNRLNGSV 125
           L L  N L G +
Sbjct: 241 LDLVYNNLTGPI 252

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 73  VENEGL-----GRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSV 125
           ++N+GL       +S+L +L+ + L  NS   +I  SLG ++SL  L L  N  NGS+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
           F  L+ LDL GN +VG + N     L+ L++L+FL L  N     I   LG + SL+ + 
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 116 LRSNRLNGSVVIKV 129
           L  N L+G +  ++
Sbjct: 219 LGYNNLSGEIPYEI 232

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 58  QLESLDLIG---NNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCL 114
           Q++SL  I    NN+ G +  E    +  L++L  L L +N+    I SSLG L +L+ L
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 115 SLRSNRLNGSVVIKVF 130
            L  N+L+G +   +F
Sbjct: 266 FLYQNKLSGPIPPSIF 281

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN03150	623	hypothetical protein; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.33
PLN03150	623	hypothetical protein; Provisional	99.25
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.18
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.68
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.68
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.36
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.33
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.22
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.16
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.03
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.52
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.24
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.17
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.05
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.0
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.41
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.0
PRK15386	426	type III secretion protein GogB; Provisional	93.79
smart00370	26	LRR Leucine-rich repeats, outliers.	93.46
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.66
smart00370	26	LRR Leucine-rich repeats, outliers.	92.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	89.84
PRK15386	426	type III secretion protein GogB; Provisional	88.44
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.84
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.23
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.91
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	81.21

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=2.4e-21  Score=175.40  Aligned_cols=164  Identities=23%  Similarity=0.419  Sum_probs=110.7

Q ss_pred             cHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCccccceEEcCCC----------------CCCccCCCCCCEEEC
Q 039460            2 LEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQWEAVEKATYE----------------CSLFTPFQQLESLDL   64 (182)
Q Consensus         2 ~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~~~----------------~~~~~~l~~L~~L~L   64 (182)
                      +++|+.||++||+++ +|...+.+|+..      .++|.|.||+|....                +..+..+++|++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~------~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L  100 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSS------ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL  100 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCC------CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence            367999999999999 777788999765      689999999997421                445667888888888


Q ss_pred             cCCccccccCcccccccCCCCCCcEEEccCCcCC----------------------cccchhccCCCCCCEEEccccccc
Q 039460           65 IGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFN----------------------NSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        65 s~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~----------------------g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      ++|.++|.+|..   .+..+++|++|++++|.++                      +.+|..++.+++|++|++++|.+.
T Consensus       101 s~n~~~~~ip~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113        101 SNNQLSGPIPDD---IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             CCCccCCcCChH---HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            888888777763   2235555555555555544                      455555666666666666666666


Q ss_pred             ccccccccccCcCCCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460          123 GSVVIKVFWFDILDENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       123 g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +.+|..++.++     +|++|++++|.+++..   +..+.+|       |.+.+.+|.+++++++|+
T Consensus       178 ~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        178 GKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             ccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            66666666555     6677777777666442   3333333       455666777777666664

>PLN03150 hypothetical protein; Provisional

Probab=99.73  E-value=1.2e-17  Score=145.02  Aligned_cols=140  Identities=26%  Similarity=0.288  Sum_probs=104.6

Q ss_pred             cHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCccccceEEcCCCCCCccCCCCCCEEECcCCccccccCcccccc
Q 039460            2 LEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGR   80 (182)
Q Consensus         2 ~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~~~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~   80 (182)
                      .+.|+.||+.+|+++ .+.  ..+|.++   +|....|.|.||.|....   ......++.|+|++|.+.|.+|.    .
T Consensus       370 ~~~~~~aL~~~k~~~~~~~--~~~W~g~---~C~p~~~~w~Gv~C~~~~---~~~~~~v~~L~L~~n~L~g~ip~----~  437 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPL--RFGWNGD---PCVPQQHPWSGADCQFDS---TKGKWFIDGLGLDNQGLRGFIPN----D  437 (623)
T ss_pred             CchHHHHHHHHHHhcCCcc--cCCCCCC---CCCCcccccccceeeccC---CCCceEEEEEECCCCCccccCCH----H
Confidence            457899999999998 432  2479763   111112379999996321   01112467788888888888887    5


Q ss_pred             cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCccccccc
Q 039460           81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCI  158 (182)
Q Consensus        81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~~~~l  158 (182)
                      +..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.++     +|++|++++|.++|..+..+
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~-----~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-----SLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC-----CCCEEECcCCcccccCChHH
Confidence            88888888888888888888888888888888888888888888888888887     88888888888887654433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=5e-14  Score=127.97  Aligned_cols=92  Identities=33%  Similarity=0.461  Sum_probs=49.5

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..+..+++|++|++++|.+.+.+|.    .+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|..++
T Consensus       158 ~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  233 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG  233 (968)
T ss_pred             hHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence            3444555555555555555555554    355555555555555555555555555555555555555555555555555


Q ss_pred             ccCcCCCCCCCcEEecCcccC
Q 039460          131 WFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .++     +|++|++++|.++
T Consensus       234 ~l~-----~L~~L~L~~n~l~  249 (968)
T PLN00113        234 GLT-----SLNHLDLVYNNLT  249 (968)
T ss_pred             cCC-----CCCEEECcCceec
Confidence            444     4555555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.33  E-value=3.1e-14  Score=103.56  Aligned_cols=119  Identities=25%  Similarity=0.354  Sum_probs=86.5

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~  128 (182)
                      |+.+..+.+|++|++++|+++ .+|.    .++.+++|+.|+++-|++. .+|..|+.++-|++|||.+|++.. .+|..
T Consensus        49 ppnia~l~nlevln~~nnqie-~lp~----~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn  122 (264)
T KOG0617|consen   49 PPNIAELKNLEVLNLSNNQIE-ELPT----SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN  122 (264)
T ss_pred             CCcHHHhhhhhhhhcccchhh-hcCh----hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc
Confidence            677888888999999999987 4776    5888899999999888887 788889999999999998888863 56777


Q ss_pred             ccccCcCCCCCCCcEEecCcccC--cccccccccCC-------CCccCcChhcccccCCCC
Q 039460          129 VFWFDILDENGLPFLEQTANRLS--LESIDCIQDLI-------YLGGNLPRKTLQQTKISE  180 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~--~~~~~~l~~L~-------~l~g~ip~~l~~l~~L~~  180 (182)
                      |+.+.     .|+.+++++|.|.  +..++.+++|.       .+- ++|.+++.+++|+|
T Consensus       123 ff~m~-----tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  123 FFYMT-----TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             hhHHH-----HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence            77776     6666777777666  33445555541       221 25666665555543

>PLN03150 hypothetical protein; Provisional

Probab=99.25  E-value=1.1e-11  Score=107.98  Aligned_cols=94  Identities=34%  Similarity=0.393  Sum_probs=84.1

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      |..+..+++|+.|+|++|.+.|.+|.    .+..+++|+.|+|++|.++|.+|..++.+++|++|+|++|+++|.+|..+
T Consensus       435 p~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        435 PNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             CHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence            66788999999999999999999998    69999999999999999999999999999999999999999999999988


Q ss_pred             cccCcCCCCCCCcEEecCcccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +.+.    .++..+++.+|...
T Consensus       511 ~~~~----~~~~~l~~~~N~~l  528 (623)
T PLN03150        511 GGRL----LHRASFNFTDNAGL  528 (623)
T ss_pred             hhcc----ccCceEEecCCccc
Confidence            7542    15677888887643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.18  E-value=2.3e-12  Score=93.91  Aligned_cols=115  Identities=25%  Similarity=0.284  Sum_probs=94.3

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+.+++.|.||+|.++- +|+    .+..+.+|+.|++.+|++. .+|.++..++.|+.|+++.|++. .+|..|+.
T Consensus        28 gLf~~s~ITrLtLSHNKl~~-vpp----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs  100 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV-VPP----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS  100 (264)
T ss_pred             cccchhhhhhhhcccCceee-cCC----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC
Confidence            34456788999999999985 666    6999999999999999998 89999999999999999999997 89999999


Q ss_pred             cCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChhcccccCCC
Q 039460          132 FDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ++     .|+++++..|++...    .|-.|..|       |.+. .+|++++++++|.
T Consensus       101 ~p-----~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq  153 (264)
T KOG0617|consen  101 FP-----ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ  153 (264)
T ss_pred             Cc-----hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence            99     788888888877733    12223333       3333 4899999998875

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=99.05  E-value=2.9e-10  Score=64.57  Aligned_cols=41  Identities=29%  Similarity=0.567  Sum_probs=29.2

Q ss_pred             cHHHHHHHHHHHHhC-C-CCCCCCCCcCCCCCCCCCCCccccceEEc
Q 039460            2 LEQERSALIQLKHFF-N-DNQRLQNWADAANDENYSNCCQWEAVEKA   46 (182)
Q Consensus         2 ~~~~~~al~~~~~~~-~-~~~~l~~W~~~~~~~~~~~~c~w~gv~c~   46 (182)
                      .++|++||++||+++ + +...+.+|+...    ..+||.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~----~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS----DSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT------S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcC----CCCCeeeccEEeC
Confidence            368999999999999 3 557899999851    2589999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=9.8e-10  Score=67.08  Aligned_cols=61  Identities=34%  Similarity=0.483  Sum_probs=43.8

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccc
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRL  121 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l  121 (182)
                      ++|++|++++|+++. +|..   .|..+++|++|++++|.+....|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~-i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-IPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE-ECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc-cCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            467778888887774 5542   577778888888888877755455777777888888777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=2.1e-09  Score=65.56  Aligned_cols=61  Identities=26%  Similarity=0.286  Sum_probs=53.0

Q ss_pred             CCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCccc
Q 039460           85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRL  150 (182)
Q Consensus        85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~  150 (182)
                      ++|++|++++|+++...+..|..+++|++|++++|.++...|..+..++     +|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-----~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-----NLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-----TESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-----CCCEEeCcCCcC
Confidence            4689999999999944446889999999999999999966667888888     999999999975

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.84  E-value=3.1e-09  Score=78.44  Aligned_cols=102  Identities=29%  Similarity=0.333  Sum_probs=47.6

Q ss_pred             Ccc-CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhc-cCCCCCCEEEccccccccccc--c
Q 039460           52 LFT-PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSL-GGLSSLRCLSLRSNRLNGSVV--I  127 (182)
Q Consensus        52 ~~~-~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~L~~N~l~g~~p--~  127 (182)
                      .++ .+.+|+.|++++|.++. ++     .+..++.|++|++++|+++ .+.+.+ ..+++|+.|++++|++.. +-  .
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~  107 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD-LNELE  107 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S-CCCCG
T ss_pred             chhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC-hHHhH
Confidence            344 46789999999999985 55     3888999999999999998 565544 468999999999999973 21  2


Q ss_pred             cccccCcCCCCCCCcEEecCcccCcc------cccccccCCCCcc
Q 039460          128 KVFWFDILDENGLPFLEQTANRLSLE------SIDCIQDLIYLGG  166 (182)
Q Consensus       128 ~~~~l~~l~~~~L~~l~l~~N~~~~~------~~~~l~~L~~l~g  166 (182)
                      .+..++     +|++|++.+|.++..      ++..+++|..|.|
T Consensus       108 ~L~~l~-----~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  108 PLSSLP-----KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             GGGG-T-----T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HHHcCC-----CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            334444     899999999999843      5677777765554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.83  E-value=5e-10  Score=95.56  Aligned_cols=119  Identities=23%  Similarity=0.246  Sum_probs=90.8

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      |..+..+..|+.||||+|++. ..|.    .+-.-.++-+|+|++|++. .||. -|.++..|-+|||++|++. .+|+.
T Consensus        96 P~diF~l~dLt~lDLShNqL~-EvP~----~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ  168 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQLR-EVPT----NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQ  168 (1255)
T ss_pred             Cchhcccccceeeecchhhhh-hcch----hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence            778888999999999999998 5787    5888889999999999998 7776 4568999999999999998 89999


Q ss_pred             ccccCcCCCCCCCcEEecCcccCcc---cccccccCCCC--------ccCcChhcccccCCCC
Q 039460          129 VFWFDILDENGLPFLEQTANRLSLE---SIDCIQDLIYL--------GGNLPRKTLQQTKISE  180 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L~~l--------~g~ip~~l~~l~~L~~  180 (182)
                      +..+.     .|++|.+++|.+..-   .+..|++|..|        ...||.++-.+.+|.+
T Consensus       169 ~RRL~-----~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d  226 (1255)
T KOG0444|consen  169 IRRLS-----MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD  226 (1255)
T ss_pred             HHHHh-----hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence            98888     888899988877633   23333333111        1236766655555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.81  E-value=2.1e-10  Score=97.76  Aligned_cols=118  Identities=24%  Similarity=0.242  Sum_probs=74.2

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      |..+..+.+|..+|+|.|.+. .+|.    .+-.+.+|+.|+|++|.++ .+....+...+|++|+++.|+++ .+|+.+
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPe----cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av  287 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPE----CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV  287 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchH----HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence            566666777777777777775 3555    4666777777777777776 55555566667777777777776 677777


Q ss_pred             cccCcCCCCCCCcEEecCcccC----cccccccccC------CCCccCcChhcccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLS----LESIDCIQDL------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~----~~~~~~l~~L------~~l~g~ip~~l~~l~~L~  179 (182)
                      ..++     .|+-|.+.+|+++    +.-++.+.+|      ++.-.-+|++++++.+|+
T Consensus       288 cKL~-----kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~  342 (1255)
T KOG0444|consen  288 CKLT-----KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQ  342 (1255)
T ss_pred             hhhH-----HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHH
Confidence            7766     6666777777666    2234444444      111223666666665554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.69  E-value=2.4e-09  Score=90.59  Aligned_cols=79  Identities=24%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..|-.+..+++|+|..|+++..- .   +++.++++|+.|++++|.+...-++.+...++|++|+|++|+++.--+..+.
T Consensus       263 G~Fy~l~kme~l~L~~N~l~~vn-~---g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~  338 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETNRLQAVN-E---GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR  338 (873)
T ss_pred             cceeeecccceeecccchhhhhh-c---ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence            34556677788888888877432 2   2577778888888888887766677777778888888888888743334444


Q ss_pred             ccC
Q 039460          131 WFD  133 (182)
Q Consensus       131 ~l~  133 (182)
                      .+.
T Consensus       339 ~L~  341 (873)
T KOG4194|consen  339 VLS  341 (873)
T ss_pred             HHH
Confidence            444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.68  E-value=1.8e-09  Score=91.41  Aligned_cols=92  Identities=27%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      .-+..|+.|+.|++|+|.|+-.-+.    .+...++|++|+|++|+++..-+..|..+..|+.|.|++|.+...--..|.
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             ccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence            3455677788888888887754333    466677788888888887744455666666777777777776643334444


Q ss_pred             ccCcCCCCCCCcEEecCcccC
Q 039460          131 WFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .++     +|+.|++.+|.++
T Consensus       363 ~ls-----sL~~LdLr~N~ls  378 (873)
T KOG4194|consen  363 GLS-----SLHKLDLRSNELS  378 (873)
T ss_pred             Hhh-----hhhhhcCcCCeEE
Confidence            445     5666666666655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.68  E-value=8.4e-09  Score=83.97  Aligned_cols=90  Identities=26%  Similarity=0.315  Sum_probs=73.6

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-----------------------h-hc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-----------------------S-SL  105 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-----------------------~-~~  105 (182)
                      |..+..+++|+.|+|++|-+. .+|.    .+..+..|+.|+++.|+|. .+|                       + .+
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~----e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLN-DLPE----EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL  501 (565)
T ss_pred             hHHHHhhhcceeeecccchhh-hcch----hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence            556778899999999998887 4887    5888888999999998886 444                       2 26


Q ss_pred             cCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          106 GGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       106 ~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..|.+|..|||.+|.+. .+|+.++.+.     +|+++++.+|.|+
T Consensus       502 ~nm~nL~tLDL~nNdlq-~IPp~Lgnmt-----nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQ-QIPPILGNMT-----NLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhcceeccCCCchh-hCChhhcccc-----ceeEEEecCCccC
Confidence            67788888888888887 7888888888     8888888888888

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.62  E-value=2.5e-08  Score=73.57  Aligned_cols=95  Identities=28%  Similarity=0.396  Sum_probs=31.5

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc-c
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV-F  130 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~-~  130 (182)
                      +.+..++++|+|++|.|+- +.     .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|.++ .+.+.+ .
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-Ie-----~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-IE-----NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHH
T ss_pred             ccccccccccccccccccc-cc-----chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHH
Confidence            3445578999999999984 44     365 5889999999999998 554 4778999999999999998 555444 3


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc----cccccccC
Q 039460          131 WFDILDENGLPFLEQTANRLSLE----SIDCIQDL  161 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L  161 (182)
                      .++     +|+.|++++|++..-    .+..+++|
T Consensus        86 ~lp-----~L~~L~L~~N~I~~l~~l~~L~~l~~L  115 (175)
T PF14580_consen   86 NLP-----NLQELYLSNNKISDLNELEPLSSLPKL  115 (175)
T ss_dssp             H-T-----T--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred             hCC-----cCCEEECcCCcCCChHHhHHHHcCCCc
Confidence            467     899999999999832    34444544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.53  E-value=7.3e-09  Score=91.33  Aligned_cols=90  Identities=26%  Similarity=0.349  Sum_probs=67.3

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      .+.+..+++|++|+|++|++. .+|..   .+.++..|+.|+|++|+++ .+|..+..++.|++|...+|++. .+| .+
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~-~fpas---~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~  448 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLN-SFPAS---KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL  448 (1081)
T ss_pred             hhhhccccceeeeeecccccc-cCCHH---HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence            445677889999999999997 58874   6788899999999999998 78887777777777777777776 566 55


Q ss_pred             cccCcCCCCCCCcEEecCcccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..++     .|+++|++.|.++
T Consensus       449 ~~l~-----qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  449 AQLP-----QLKVLDLSCNNLS  465 (1081)
T ss_pred             hhcC-----cceEEecccchhh
Confidence            5555     5555555555555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.52  E-value=6.3e-09  Score=84.66  Aligned_cols=91  Identities=26%  Similarity=0.229  Sum_probs=60.7

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhcc-CCCCCCEEEccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG-GLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~-~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      |+.++.+.+|..||+..|.+. .+|.     |..++.|++|.++.|++. .+|.+.. ++.++.+|||..|++. ++|..
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lPe-----f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLPE-----FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCCC-----CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence            566666666666666666665 2553     666666666666666665 5666554 6777777777777776 67777


Q ss_pred             ccccCcCCCCCCCcEEecCcccCcc
Q 039460          129 VFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +.-+.     +|+++|+++|.+++-
T Consensus       271 ~clLr-----sL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  271 ICLLR-----SLERLDLSNNDISSL  290 (565)
T ss_pred             HHHhh-----hhhhhcccCCccccC
Confidence            77666     677777777777743

>PLN03210 Resistant to P

Probab=98.36  E-value=2.1e-06  Score=80.06  Aligned_cols=86  Identities=21%  Similarity=0.159  Sum_probs=52.1

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|+.|+|+++...+.+|.     +..+++|+.|+|++|.....+|..++.+++|+.|+++++.....+|..+ .+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            44566666666666554445553     5666677777776665545667777777777777777654444666544 33


Q ss_pred             CcCCCCCCCcEEecCcc
Q 039460          133 DILDENGLPFLEQTANR  149 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~  149 (182)
                      +     +|+.|++++|.
T Consensus       704 ~-----sL~~L~Lsgc~  715 (1153)
T PLN03210        704 K-----SLYRLNLSGCS  715 (1153)
T ss_pred             C-----CCCEEeCCCCC
Confidence            3     55666665553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.35  E-value=1.4e-07  Score=76.63  Aligned_cols=91  Identities=23%  Similarity=0.235  Sum_probs=78.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .|..|++|+.|+|++|.+++.-+.    .|..+..++.|.|..|++...--..|..+.+|+.|+|.+|+++-..|..|..
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            466799999999999999986554    7999999999999999997444457889999999999999999888888877


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +.     +|..+++.+|.+.
T Consensus       345 ~~-----~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  345 LF-----SLSTLNLLSNPFN  359 (498)
T ss_pred             cc-----eeeeeehccCccc
Confidence            77     8888888888776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=6.4e-07  Score=50.94  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=21.9

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           86 NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        86 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      +|++|++++|+++ .+|+.+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 55655666666666666666665

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.34  E-value=1.4e-06  Score=77.58  Aligned_cols=17  Identities=18%  Similarity=0.243  Sum_probs=9.6

Q ss_pred             CCCccCcChhcccccCCC
Q 039460          162 IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       162 ~~l~g~ip~~l~~l~~L~  179 (182)
                      |.++ .||.+++++++|.
T Consensus       432 NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        432 NQLT-RLPESLIHLSSET  448 (788)
T ss_pred             Cccc-ccChHHhhccCCC
Confidence            3444 4676666666553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.33  E-value=6e-06  Score=73.57  Aligned_cols=55  Identities=27%  Similarity=0.383  Sum_probs=29.3

Q ss_pred             CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      +++.|++++|.++. +|.    .+.  .+|++|++++|.++ .+|..+.  ..|+.|+|++|++.
T Consensus       200 ~L~~L~Ls~N~Lts-LP~----~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        200 QITTLILDNNELKS-LPE----NLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             CCcEEEecCCCCCc-CCh----hhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence            56777777777763 554    222  35666666666665 4454332  23444444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.23  E-value=8.7e-07  Score=78.83  Aligned_cols=65  Identities=22%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCccccccccc
Q 039460           86 NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQD  160 (182)
Q Consensus        86 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~  160 (182)
                      +|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..++.+.     +|+.+++++|++++..+..+..
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~-----~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLS-----SETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhcc-----CCCeEECCCCCCCchHHHHHHH
Confidence            3444444444444 23332   123455556666655 5666666655     7788888888888775554433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.22  E-value=5.5e-08  Score=82.15  Aligned_cols=89  Identities=25%  Similarity=0.319  Sum_probs=68.6

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      |..+..+..|+++||+.|+++ .+|.    .++.|+ |+.|-+++|+++ .+|..++.++.|..||.+.|.+. .+|..+
T Consensus       114 p~~i~~L~~lt~l~ls~NqlS-~lp~----~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql  185 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQLS-HLPD----GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL  185 (722)
T ss_pred             chhhhhhhHHHHhhhccchhh-cCCh----hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh
Confidence            667788888999999999988 4666    466666 888888888887 78888888888888888888887 788888


Q ss_pred             cccCcCCCCCCCcEEecCcccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +.+.     +|+.+.+..|.+.
T Consensus       186 ~~l~-----slr~l~vrRn~l~  202 (722)
T KOG0532|consen  186 GYLT-----SLRDLNVRRNHLE  202 (722)
T ss_pred             hhHH-----HHHHHHHhhhhhh
Confidence            7777     5555555555443

>PLN03210 Resistant to P

Probab=98.16  E-value=6.1e-06  Score=77.02  Aligned_cols=59  Identities=19%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccc
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNR  120 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~  120 (182)
                      +.|+.|++++|...+.+|.    .+..+++|+.|++++|..-+.+|..+ .+++|+.|+++++.
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~----si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPS----SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             ccchheeCCCCCCccccCh----hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            3455555555555555554    35555666666665544333455443 34555555555443

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.10  E-value=4.7e-07  Score=73.73  Aligned_cols=97  Identities=21%  Similarity=0.181  Sum_probs=71.3

Q ss_pred             eEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc
Q 039460           43 VEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS  118 (182)
Q Consensus        43 v~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~  118 (182)
                      |.|...+    |..+.  ...++++|..|+|+ .+|+.   .|+.+++|+.|||+.|.++..-|+.|..+++|..|-+.+
T Consensus        51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~---aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPG---AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             EEccCCCcccCcccCC--CcceEEEeccCCcc-cCChh---hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence            7787654    33332  35778899999998 47773   899999999999999999977788999999888776665


Q ss_pred             -ccccccccc-cccccCcCCCCCCCcEEecCcccC
Q 039460          119 -NRLNGSVVI-KVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       119 -N~l~g~~p~-~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                       |+++ .+|+ .|+.+.     +++-|.+..|.+.
T Consensus       125 ~NkI~-~l~k~~F~gL~-----slqrLllNan~i~  153 (498)
T KOG4237|consen  125 NNKIT-DLPKGAFGGLS-----SLQRLLLNANHIN  153 (498)
T ss_pred             CCchh-hhhhhHhhhHH-----HHHHHhcChhhhc
Confidence             8888 5664 455555     5555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.10  E-value=1.3e-06  Score=78.85  Aligned_cols=86  Identities=24%  Similarity=0.328  Sum_probs=60.0

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      |..++.|++|||++|.--+.+|.    .++.|-+|++|++++..++ .+|..+++++.|.+|++..+.....+|.....+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhc
Confidence            55577777777777766666776    5777777777777777776 777777777777777777666554555555545


Q ss_pred             CcCCCCCCCcEEecCc
Q 039460          133 DILDENGLPFLEQTAN  148 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N  148 (182)
                      .     +|+++.+...
T Consensus       642 ~-----~Lr~L~l~~s  652 (889)
T KOG4658|consen  642 Q-----SLRVLRLPRS  652 (889)
T ss_pred             c-----cccEEEeecc
Confidence            5     7777776544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.08  E-value=1.6e-06  Score=69.21  Aligned_cols=90  Identities=24%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEcccccccccc----ccc
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGSV----VIK  128 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~----p~~  128 (182)
                      ++|++|++++|.+++.....+...+..+.+|++|++++|.+++.    ++..+..+++|++|++++|.+++..    +..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            45555555555555221110001233444555555555555421    2223334445555555555554221    122


Q ss_pred             ccccCcCCCCCCCcEEecCcccC
Q 039460          129 VFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +..++     +|++|++++|.++
T Consensus       217 ~~~~~-----~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLK-----SLEVLNLGDNNLT  234 (319)
T ss_pred             hcccC-----CCCEEecCCCcCc
Confidence            22233     5566666666555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.04  E-value=1.2e-05  Score=71.59  Aligned_cols=77  Identities=18%  Similarity=0.296  Sum_probs=52.9

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD  136 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~  136 (182)
                      ++|++|++++|.++ .+|.    .+  ..+|+.|+|++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  .   
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~----~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~---  283 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPA----TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E---  283 (754)
T ss_pred             cCCCEEECCCCccc-cCCh----hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C---
Confidence            47899999999988 4665    23  246778888888776 6676654  46777788777776 5666442  2   


Q ss_pred             CCCCCcEEecCcccC
Q 039460          137 ENGLPFLEQTANRLS  151 (182)
Q Consensus       137 ~~~L~~l~l~~N~~~  151 (182)
                        +|++|++++|+++
T Consensus       284 --sL~~L~Ls~N~Lt  296 (754)
T PRK15370        284 --ELRYLSVYDNSIR  296 (754)
T ss_pred             --CCcEEECCCCccc
Confidence              5666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.03  E-value=1.4e-06  Score=69.01  Aligned_cols=59  Identities=32%  Similarity=0.445  Sum_probs=45.0

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      +.|+++|||+|.|+ .+..    +..-++.++.|++++|.+. .+ +.+..+++|+.|||++|.++
T Consensus       284 q~LtelDLS~N~I~-~iDE----SvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDE----SVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhhccccccchh-hhhh----hhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence            45788888888887 4555    4677788888888888886 33 33778888888888888886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.01  E-value=9.6e-07  Score=78.34  Aligned_cols=82  Identities=32%  Similarity=0.441  Sum_probs=63.5

Q ss_pred             CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460           58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE  137 (182)
Q Consensus        58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~  137 (182)
                      +|+.||+++|.+. .+|.    .++.+.+|+.|+++.|.+. .+|....++.+|+++.|..|++. .+|..+..++    
T Consensus        46 ~L~~l~lsnn~~~-~fp~----~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk----  114 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPI----QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELK----  114 (1081)
T ss_pred             eeEEeeccccccc-cCCc----hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhh----
Confidence            4788888888875 4666    4777788888888888776 67777778888888888888776 7788777777    


Q ss_pred             CCCCcEEecCcccC
Q 039460          138 NGLPFLEQTANRLS  151 (182)
Q Consensus       138 ~~L~~l~l~~N~~~  151 (182)
                       +|++|+++.|.|.
T Consensus       115 -nl~~LdlS~N~f~  127 (1081)
T KOG0618|consen  115 -NLQYLDLSFNHFG  127 (1081)
T ss_pred             -cccccccchhccC
Confidence             7778888887776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.98  E-value=6.6e-07  Score=75.81  Aligned_cols=89  Identities=21%  Similarity=0.260  Sum_probs=74.9

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      |..++.+.+|..||.+.|.+.. +|.    .++.+.+|+.|.+.+|++. .+|+.+..|+ |..||++.|+++ .||..|
T Consensus       159 p~~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~f  230 (722)
T KOG0532|consen  159 PEEIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDF  230 (722)
T ss_pred             CcccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhh
Confidence            6677777888888999988874 666    4888888999999888887 7888887665 888999999998 899999


Q ss_pred             cccCcCCCCCCCcEEecCcccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..|.     .|++|.|.+|.+.
T Consensus       231 r~m~-----~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  231 RKMR-----HLQVLQLENNPLQ  247 (722)
T ss_pred             hhhh-----hheeeeeccCCCC
Confidence            8888     8999999999888

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=7.7e-06  Score=46.42  Aligned_cols=37  Identities=22%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          109 SSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       109 ~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++|++|++++|+++ .+|+.+..++     +|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~-----~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLP-----NLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCT-----TSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCC-----CCCEEEecCCCCC
Confidence            47999999999999 7888889988     9999999999988

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.92  E-value=3.1e-06  Score=67.11  Aligned_cols=85  Identities=22%  Similarity=0.250  Sum_probs=62.8

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +.-++.+++|++|+|.+.. +-     ++..+.+|+.|||++|.++ .+..+-..+-+++.|.|++|.+.  --..++.+
T Consensus       303 vKL~Pkir~L~lS~N~i~~-v~-----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KL  373 (490)
T KOG1259|consen  303 VKLAPKLRRLILSQNRIRT-VQ-----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKL  373 (490)
T ss_pred             hhhccceeEEeccccceee-eh-----hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhh
Confidence            4446889999999999973 33     4888999999999999987 56555556777788888888775  12334555


Q ss_pred             CcCCCCCCCcEEecCcccC
Q 039460          133 DILDENGLPFLEQTANRLS  151 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~  151 (182)
                      -     +|.+|++.+|++.
T Consensus       374 Y-----SLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  374 Y-----SLVNLDLSSNQIE  387 (490)
T ss_pred             h-----hheeccccccchh
Confidence            5     6777777777776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.87  E-value=3.7e-06  Score=67.03  Aligned_cols=62  Identities=21%  Similarity=0.216  Sum_probs=29.0

Q ss_pred             CCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccc----ccccccccCcCCCCCCCcEEecCcccC
Q 039460           85 SNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGS----VVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus        85 ~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++|+.|++++|.+++.    ++..+..++.|+.|++++|.+++.    ++..+...+     +|+++++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-----~L~~L~L~~n~i~  206 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-----NLEVLDLNNNGLT  206 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-----CCCEEeccCCccC
Confidence            4555555555555421    222333444555555555555421    122222222     5666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=2.2e-06  Score=60.60  Aligned_cols=87  Identities=21%  Similarity=0.268  Sum_probs=69.7

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      +....+|+.++|++|.+.. +|+    .|. .++.++.|+++.|.++ .+|..+..++.|+.|++..|.+. ..|..+..
T Consensus        49 l~~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~  121 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP  121 (177)
T ss_pred             HhCCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH
Confidence            3445678888999999984 676    354 4567889999999998 89999999999999999999997 78888877


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +.     ++.+|+..+|...
T Consensus       122 L~-----~l~~Lds~~na~~  136 (177)
T KOG4579|consen  122 LI-----KLDMLDSPENARA  136 (177)
T ss_pred             HH-----hHHHhcCCCCccc
Confidence            77     6777777776655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.69  E-value=2.2e-05  Score=64.82  Aligned_cols=83  Identities=34%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCC-CCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLS-NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +.++.|++.+|.++- +|.    ....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+...  
T Consensus       116 ~~l~~L~l~~n~i~~-i~~----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~--  186 (394)
T COG4886         116 TNLTSLDLDNNNITD-IPP----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS--  186 (394)
T ss_pred             cceeEEecCCccccc-Ccc----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhh--
Confidence            445555555555542 333    133332 5555555555554 44444555555555555555554 4444332333  


Q ss_pred             CCCCCCcEEecCcccC
Q 039460          136 DENGLPFLEQTANRLS  151 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~  151 (182)
                         .|+.+++++|+++
T Consensus       187 ---~L~~L~ls~N~i~  199 (394)
T COG4886         187 ---NLNNLDLSGNKIS  199 (394)
T ss_pred             ---hhhheeccCCccc
Confidence               3444444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.60  E-value=2e-05  Score=65.14  Aligned_cols=87  Identities=30%  Similarity=0.414  Sum_probs=70.1

Q ss_pred             CCCccCCC-CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc
Q 039460           50 CSLFTPFQ-QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      ++....+. +|+.|+++.|.+.- +|.    .+..++.|+.|+++.|.+. .+|...+..+.|+.|++++|+++ .+|..
T Consensus       132 ~~~~~~~~~nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~  204 (394)
T COG4886         132 PPLIGLLKSNLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE  204 (394)
T ss_pred             ccccccchhhcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence            44455564 89999999999984 543    3789999999999999998 78887778899999999999998 78887


Q ss_pred             ccccCcCCCCCCCcEEecCc
Q 039460          129 VFWFDILDENGLPFLEQTAN  148 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N  148 (182)
                      +....     .|+.+.+++|
T Consensus       205 ~~~~~-----~L~~l~~~~N  219 (394)
T COG4886         205 IELLS-----ALEELDLSNN  219 (394)
T ss_pred             hhhhh-----hhhhhhhcCC
Confidence            54444     5677777777

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.56  E-value=4.9e-05  Score=58.80  Aligned_cols=102  Identities=22%  Similarity=0.269  Sum_probs=71.2

Q ss_pred             CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCC--cCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN--SFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n--~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      .+..|+.+.+.+..++. +-     .+..|++|+.|.++.|  +..+.++.....+++|+++++++|++.  ++.++..+
T Consensus        41 ~~~~le~ls~~n~gltt-~~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT-LT-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPL  112 (260)
T ss_pred             cccchhhhhhhccceee-cc-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchh
Confidence            44566666666666653 22     4778889999999999  666667666667799999999999985  35555555


Q ss_pred             CcCCCCCCCcEEecCcccCcc------cccccccCCCCcc
Q 039460          133 DILDENGLPFLEQTANRLSLE------SIDCIQDLIYLGG  166 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~~------~~~~l~~L~~l~g  166 (182)
                      +.+.  +|..|++.++..+..      ++..+++|..+.|
T Consensus       113 ~~l~--nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  113 KELE--NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhc--chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            4332  577888887776632      5666777766654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.52  E-value=7.8e-06  Score=71.41  Aligned_cols=86  Identities=31%  Similarity=0.397  Sum_probs=62.1

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEcccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      +.-++.+++|||++|+++.. -     .+..+++|++|||++|.++ .+|. ....+. |+.|.+.+|.++ . -..+.+
T Consensus       183 Lqll~ale~LnLshNk~~~v-~-----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-t-L~gie~  252 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV-D-----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-T-LRGIEN  252 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh-H-----HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-h-hhhHHh
Confidence            44467889999999998853 2     4778899999999999987 6765 233444 888888888886 2 233455


Q ss_pred             cCcCCCCCCCcEEecCcccCcc
Q 039460          132 FDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ++     +|+.||++.|.+.+.
T Consensus       253 Lk-----sL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  253 LK-----SLYGLDLSYNLLSEH  269 (1096)
T ss_pred             hh-----hhhccchhHhhhhcc
Confidence            55     778888888877743

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.39  E-value=7e-05  Score=67.98  Aligned_cols=85  Identities=25%  Similarity=0.214  Sum_probs=70.9

Q ss_pred             CCCCCEEECcCCcc-ccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCc
Q 039460           56 FQQLESLDLIGNNI-VGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDI  134 (182)
Q Consensus        56 l~~L~~L~Ls~n~l-~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  134 (182)
                      .+.|++|-+..|.. ...++..   .|..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..++.++ 
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~---ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk-  618 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGE---FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK-  618 (889)
T ss_pred             CCccceEEEeecchhhhhcCHH---HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH-
Confidence            34788998888862 2234432   4788999999999998877799999999999999999999998 8999999999 


Q ss_pred             CCCCCCCcEEecCcc
Q 039460          135 LDENGLPFLEQTANR  149 (182)
Q Consensus       135 l~~~~L~~l~l~~N~  149 (182)
                          .|.+|++..+.
T Consensus       619 ----~L~~Lnl~~~~  629 (889)
T KOG4658|consen  619 ----KLIYLNLEVTG  629 (889)
T ss_pred             ----hhheecccccc
Confidence                78888887654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=6.8e-05  Score=62.01  Aligned_cols=13  Identities=31%  Similarity=0.294  Sum_probs=9.2

Q ss_pred             CCCcEEecCcccC
Q 039460          139 GLPFLEQTANRLS  151 (182)
Q Consensus       139 ~L~~l~l~~N~~~  151 (182)
                      .|+.|++++|++-
T Consensus       247 ~L~~LdLs~N~li  259 (505)
T KOG3207|consen  247 TLQELDLSNNNLI  259 (505)
T ss_pred             HHhhccccCCccc
Confidence            5677778777665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.17  E-value=0.0002  Score=59.88  Aligned_cols=85  Identities=33%  Similarity=0.453  Sum_probs=42.1

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..++.+..|++..|.+... ..    .+..+++|++|++++|.++.. . .+..++.|+.|++.+|.++ .+. .+..+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~----~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~l~~N~i~-~~~-~~~~l  161 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-EN----LLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELNLSGNLIS-DIS-GLESL  161 (414)
T ss_pred             cccccceeeeeccccchhhc-cc----chhhhhcchheeccccccccc-c-chhhccchhhheeccCcch-hcc-CCccc
Confidence            44555666666666666542 21    144566666666666665522 1 1334444566666666654 222 12223


Q ss_pred             CcCCCCCCCcEEecCcccC
Q 039460          133 DILDENGLPFLEQTANRLS  151 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~  151 (182)
                      .     .|+.+++++|.++
T Consensus       162 ~-----~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  162 K-----SLKLLDLSYNRIV  175 (414)
T ss_pred             h-----hhhcccCCcchhh
Confidence            3     4555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.05  E-value=0.0012  Score=49.72  Aligned_cols=93  Identities=20%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccc--cccccCc
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI--KVFWFDI  134 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~  134 (182)
                      .+...+||+.|.+-- ++     .|..++.|++|.++.|+++..-|.--..+++|..|.|.+|.+. ++-+  -+..++ 
T Consensus        42 d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p-  113 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCP-  113 (233)
T ss_pred             cccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCC-
Confidence            356778888888753 44     4788888899999998888433433335577888888888886 2211  122333 


Q ss_pred             CCCCCCCcEEecCcccCcc------cccccccC
Q 039460          135 LDENGLPFLEQTANRLSLE------SIDCIQDL  161 (182)
Q Consensus       135 l~~~~L~~l~l~~N~~~~~------~~~~l~~L  161 (182)
                          .|++|.+-+|..+-.      ++..+++|
T Consensus       114 ----~L~~Ltll~Npv~~k~~YR~yvl~klp~l  142 (233)
T KOG1644|consen  114 ----KLEYLTLLGNPVEHKKNYRLYVLYKLPSL  142 (233)
T ss_pred             ----ccceeeecCCchhcccCceeEEEEecCcc
Confidence                778888888877733      45555555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.00  E-value=0.00018  Score=60.15  Aligned_cols=85  Identities=33%  Similarity=0.341  Sum_probs=64.9

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-ccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VFW  131 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~  131 (182)
                      +..+.+|++|++++|.|+. +.     .+..++.|+.|++++|.++ .+ ..+..++.|+.+++++|.+.. +... ...
T Consensus       114 l~~~~~L~~L~ls~N~I~~-i~-----~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~  184 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITK-LE-----GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVD-IENDELSE  184 (414)
T ss_pred             hhhhhcchheecccccccc-cc-----chhhccchhhheeccCcch-hc-cCCccchhhhcccCCcchhhh-hhhhhhhh
Confidence            6678999999999999986 43     3788888999999999997 33 346668999999999999984 3332 234


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +.     +++.+++.+|.+.
T Consensus       185 ~~-----~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  185 LI-----SLEELDLGGNSIR  199 (414)
T ss_pred             cc-----chHHHhccCCchh
Confidence            44     5666667766665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.93  E-value=5.5e-05  Score=66.28  Aligned_cols=89  Identities=24%  Similarity=0.263  Sum_probs=64.7

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccc-cccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSV-VIKV  129 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~-p~~~  129 (182)
                      ..+..+++|++|||++|.+. .+|..   ....+. |+.|.+.+|.++ .+ ..+.++++|+.||+++|-+.+.- -..+
T Consensus       203 ~~Lr~l~~LkhLDlsyN~L~-~vp~l---~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pL  275 (1096)
T KOG1859|consen  203 DNLRRLPKLKHLDLSYNCLR-HVPQL---SMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPL  275 (1096)
T ss_pred             HHHHhcccccccccccchhc-ccccc---chhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHH
Confidence            45667899999999999998 47762   223333 999999999987 33 34779999999999999998531 1122


Q ss_pred             cccCcCCCCCCCcEEecCcccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..+.     .|+.|++.+|.+-
T Consensus       276 wsLs-----~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  276 WSLS-----SLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHH-----HHHHHhhcCCccc
Confidence            3333     6677888888765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.55  E-value=0.00016  Score=51.33  Aligned_cols=68  Identities=25%  Similarity=0.343  Sum_probs=59.0

Q ss_pred             CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      .++.++.|++++|.+. .+|.    .+..++.|+.|+++.|.+. ..|..+..+.++-+|+...|... ++|-.+
T Consensus        75 kf~t~t~lNl~~neis-dvPe----E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl  142 (177)
T KOG4579|consen   75 KFPTATTLNLANNEIS-DVPE----ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL  142 (177)
T ss_pred             ccchhhhhhcchhhhh-hchH----HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence            3458899999999998 4888    5999999999999999998 77887888999999999999886 777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.41  E-value=0.0015  Score=31.15  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=16.9

Q ss_pred             CCCEEEcccccccccccccccc
Q 039460          110 SLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus       110 ~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      +|++|++++|+++ .+|..++.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4789999999998 88887643

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.30  E-value=0.0069  Score=45.67  Aligned_cols=86  Identities=24%  Similarity=0.225  Sum_probs=63.3

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccch--hccCCCCCCEEEccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFS--SLGGLSSLRCLSLRSNRLNGSVV  126 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~~L~L~~N~l~g~~p  126 (182)
                      ...|..++.|..|.+++|+|+..-|.     +. .+++|+.|.|.+|++. .+-+  .+..++.|++|.+-+|..+. .+
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~-----L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~-k~  129 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPD-----LDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH-KK  129 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccc-----hhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhc-cc
Confidence            45677889999999999999964443     54 4678999999999985 3322  35678999999999998873 22


Q ss_pred             c----cccccCcCCCCCCCcEEecC
Q 039460          127 I----KVFWFDILDENGLPFLEQTA  147 (182)
Q Consensus       127 ~----~~~~l~~l~~~~L~~l~l~~  147 (182)
                      .    .+..++     +|++||+.+
T Consensus       130 ~YR~yvl~klp-----~l~~LDF~k  149 (233)
T KOG1644|consen  130 NYRLYVLYKLP-----SLRTLDFQK  149 (233)
T ss_pred             CceeEEEEecC-----cceEeehhh
Confidence            1    234455     888888753

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.19  E-value=7.1e-05  Score=57.49  Aligned_cols=92  Identities=16%  Similarity=0.061  Sum_probs=78.9

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      ..++..+...+.||++.|++.. +-.    .|+-++.+..|+++.|.+. .+|..+++...++.+++..|+++ ..|.++
T Consensus        35 v~ei~~~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~  107 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ  107 (326)
T ss_pred             hhhhhccceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence            3466778899999999999874 333    5888899999999999997 78999999999999999999987 899999


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +.++     +++++++-+|.|+..
T Consensus       108 ~k~~-----~~k~~e~k~~~~~~~  126 (326)
T KOG0473|consen  108 KKEP-----HPKKNEQKKTEFFRK  126 (326)
T ss_pred             cccC-----CcchhhhccCcchHH
Confidence            9988     899999999988733

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.0022  Score=53.30  Aligned_cols=92  Identities=23%  Similarity=0.171  Sum_probs=47.5

Q ss_pred             CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc--hhccCCCCCCEEEccccccccc-ccccccc
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF--SSLGGLSSLRCLSLRSNRLNGS-VVIKVFW  131 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~  131 (182)
                      .++.|..|+|.+|...+....    ...-+..|+.|||++|.+- ..+  ...+.++.|+.|.++.+.+... +|+.=..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             hCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccch
Confidence            355666666666642221111    2334556777777777654 233  3455666677666666666531 2222000


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ...-...+|++|++..|++.
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhcccccceeeecccCccc
Confidence            00112237788888887774

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.55  E-value=0.0083  Score=46.66  Aligned_cols=68  Identities=28%  Similarity=0.379  Sum_probs=52.0

Q ss_pred             CCCccCCCCCCEEECcCC--ccccccCcccccccCCCCCCcEEEccCCcCCcccchh---ccCCCCCCEEEcccccccc
Q 039460           50 CSLFTPFQQLESLDLIGN--NIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSS---LGGLSSLRCLSLRSNRLNG  123 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n--~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~---~~~l~~L~~L~L~~N~l~g  123 (182)
                      ...+..|++|+.|++|.|  ++.+.++.    -.-.+++|+++++++|++.  ++..   +..+.+|..|++.++..++
T Consensus        58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   58 LTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCccc
Confidence            446777899999999999  77777765    2445699999999999986  2433   4466778888888877664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.32  E-value=0.0081  Score=53.54  Aligned_cols=93  Identities=27%  Similarity=0.419  Sum_probs=54.4

Q ss_pred             cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc-ccchhccCCCCCCEEEccccccccc--cccccc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN-SIFSSLGGLSSLRCLSLRSNRLNGS--VVIKVF  130 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~--~p~~~~  130 (182)
                      .++++|..||+|+.+++. +-     .++.+++|+.|.+-+=.+.. ..-..+.++++|++||+|.......  +....-
T Consensus       170 ~sFpNL~sLDIS~TnI~n-l~-----GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl  243 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISN-LS-----GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYL  243 (699)
T ss_pred             hccCccceeecCCCCccC-cH-----HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHH
Confidence            357778888888877763 21     36677777777665433321 1112456788888888887665421  111111


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc
Q 039460          131 WFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      .+... .+.|++||.+++.+...
T Consensus       244 ec~~~-LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  244 ECGMV-LPELRFLDCSGTDINEE  265 (699)
T ss_pred             Hhccc-CccccEEecCCcchhHH
Confidence            11111 23788888888777755

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.23  E-value=0.0034  Score=50.79  Aligned_cols=94  Identities=24%  Similarity=0.186  Sum_probs=51.8

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhcc-CCCCCCEEEccccccccc--
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLG-GLSSLRCLSLRSNRLNGS--  124 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~-~l~~L~~L~L~~N~l~g~--  124 (182)
                      .+..+++|++|||..|.|+-.-.......++.+++|+.|+++++.+...    +-..+. ..++|++|.+.+|.++..  
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            3456677777777777775321100011356666777777777766422    112221 356777777777777622  


Q ss_pred             --ccccccccCcCCCCCCCcEEecCccc
Q 039460          125 --VVIKVFWFDILDENGLPFLEQTANRL  150 (182)
Q Consensus       125 --~p~~~~~l~~l~~~~L~~l~l~~N~~  150 (182)
                        +-..+...+     .|..|++++|.+
T Consensus       288 ~~la~~~~ek~-----dL~kLnLngN~l  310 (382)
T KOG1909|consen  288 LALAACMAEKP-----DLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHhcch-----hhHHhcCCcccc
Confidence              111222223     677777777777

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.12  E-value=0.0069  Score=48.39  Aligned_cols=65  Identities=32%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      .++++++||.+|.++. +.. ++.-+..|+.|++|+|+.|.+...|-..-..+.+|++|-|.+..+.
T Consensus        70 ~~~v~elDL~~N~iSd-Wse-I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISD-WSE-IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhhhcccchhcc-HHH-HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            3567778888887763 211 1112456778888888888776544332235567777777766664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.07  E-value=0.0091  Score=53.21  Aligned_cols=86  Identities=20%  Similarity=0.315  Sum_probs=64.1

Q ss_pred             CCCCCCEEECcCCccccc-cCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGC-VENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVFWF  132 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~-~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l  132 (182)
                      .||.|+.|.+.+-.+... +-.    -+.++++|..||+++..++ .+ ..++.+++|++|.+.+=.+.. ..-..++.|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~----lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQ----LCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             hCcccceEEecCceecchhHHH----HhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            478999999988776432 222    3568999999999999887 33 678899999999887766652 222356667


Q ss_pred             CcCCCCCCCcEEecCcccC
Q 039460          133 DILDENGLPFLEQTANRLS  151 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~  151 (182)
                      +     +|++||+|.....
T Consensus       220 ~-----~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  220 K-----KLRVLDISRDKNN  233 (699)
T ss_pred             c-----CCCeeeccccccc
Confidence            7     9999999977655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.41  E-value=0.026  Score=25.00  Aligned_cols=11  Identities=64%  Similarity=0.905  Sum_probs=3.5

Q ss_pred             CCEEEcccccc
Q 039460          111 LRCLSLRSNRL  121 (182)
Q Consensus       111 L~~L~L~~N~l  121 (182)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=0.0035  Score=49.59  Aligned_cols=68  Identities=34%  Similarity=0.294  Sum_probs=52.6

Q ss_pred             cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch--hccCCCCCCEEEccccccccccccc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS--SLGGLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      ..++.|++|.||-|.|+..-|      +..+++|+.|+|..|.+. .+.+  -+.++++|+.|+|..|...|.-+..
T Consensus        38 ~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~n  107 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQN  107 (388)
T ss_pred             HhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchh
Confidence            457889999999999985432      778899999999998876 4443  3568889999999988888776553

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.79  E-value=0.17  Score=42.44  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=42.4

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEcccc-ccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSN-RLNGSVVIKVF  130 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N-~l~g~~p~~~~  130 (182)
                      +..+.+++.|++++|.++. +|.     +  ..+|+.|.+++ +.+. .+|..+.  ++|+.|++++| .+. .+|..+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~-----L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV-----L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC-----C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccccc
Confidence            3345788899999887763 442     2  23588888876 3443 5665442  57888888877 443 5666554


Q ss_pred             c
Q 039460          131 W  131 (182)
Q Consensus       131 ~  131 (182)
                      .
T Consensus       116 ~  116 (426)
T PRK15386        116 S  116 (426)
T ss_pred             e
Confidence            3

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.46  E-value=0.065  Score=26.24  Aligned_cols=18  Identities=39%  Similarity=0.482  Sum_probs=8.9

Q ss_pred             CCCCEEEcccccccccccc
Q 039460          109 SSLRCLSLRSNRLNGSVVI  127 (182)
Q Consensus       109 ~~L~~L~L~~N~l~g~~p~  127 (182)
                      ++|++|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555554 3443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.46  E-value=0.065  Score=26.24  Aligned_cols=18  Identities=39%  Similarity=0.482  Sum_probs=8.9

Q ss_pred             CCCCEEEcccccccccccc
Q 039460          109 SSLRCLSLRSNRLNGSVVI  127 (182)
Q Consensus       109 ~~L~~L~L~~N~l~g~~p~  127 (182)
                      ++|++|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555554 3443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.20  E-value=0.0021  Score=50.85  Aligned_cols=97  Identities=20%  Similarity=0.273  Sum_probs=69.0

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +..++.|++=++.+.. |.     -+..|+.|++|.|+-|+++. + ..+..+++|+.|+|..|.|. .+ ..+..++  
T Consensus        18 l~~vkKLNcwg~~L~D-Is-----ic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~-sl-dEL~YLk--   85 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-IS-----ICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE-SL-DELEYLK--   85 (388)
T ss_pred             HHHhhhhcccCCCccH-HH-----HHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc-cH-HHHHHHh--
Confidence            4566777777777764 32     25679999999999999973 3 34678999999999999986 33 2344443  


Q ss_pred             CCCCCCcEEecCcccCcc--------cccccccCCCC
Q 039460          136 DENGLPFLEQTANRLSLE--------SIDCIQDLIYL  164 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~~~--------~~~~l~~L~~l  164 (182)
                      +.++|+.|.+..|.-.|.        ++..++||..|
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL  122 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL  122 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence            224899999998887744        56666666444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.86  E-value=0.091  Score=41.70  Aligned_cols=71  Identities=21%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-h-------------ccCCCCCCEEEc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-S-------------LGGLSSLRCLSL  116 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~-------------~~~l~~L~~L~L  116 (182)
                      +.+..+++|+.++||.|.|....|++...-++.-+.|++|.+++|.+. ++.. .             ...-|.|++...
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            455678999999999999987777653334667788999999999874 3322 1             223477888888


Q ss_pred             cccccc
Q 039460          117 RSNRLN  122 (182)
Q Consensus       117 ~~N~l~  122 (182)
                      .+|++.
T Consensus       165 grNRle  170 (388)
T COG5238         165 GRNRLE  170 (388)
T ss_pred             ccchhc
Confidence            888875

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.66  E-value=0.12  Score=25.20  Aligned_cols=18  Identities=33%  Similarity=0.383  Sum_probs=10.8

Q ss_pred             CCCcEEEccCCcCCcccch
Q 039460           85 SNLKFLRLDFNSFNNSIFS  103 (182)
Q Consensus        85 ~~L~~L~L~~n~l~g~~p~  103 (182)
                      ++|++|+|++|.+. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45666666666665 4444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.66  E-value=0.12  Score=25.20  Aligned_cols=18  Identities=33%  Similarity=0.383  Sum_probs=10.8

Q ss_pred             CCCcEEEccCCcCCcccch
Q 039460           85 SNLKFLRLDFNSFNNSIFS  103 (182)
Q Consensus        85 ~~L~~L~L~~n~l~g~~p~  103 (182)
                      ++|++|+|++|.+. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45666666666665 4444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.06  E-value=0.078  Score=42.08  Aligned_cols=41  Identities=24%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             cCCCCCCcEEEccCCcCCcccchh----ccCCCCCCEEEcccccc
Q 039460           81 LSRLSNLKFLRLDFNSFNNSIFSS----LGGLSSLRCLSLRSNRL  121 (182)
Q Consensus        81 ~~~l~~L~~L~L~~n~l~g~~p~~----~~~l~~L~~L~L~~N~l  121 (182)
                      +..+++|+..+||.|.+....|+.    +..-..|.+|.+++|.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            444556666666666665444443    33445566666666555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.94  E-value=0.16  Score=40.89  Aligned_cols=64  Identities=27%  Similarity=0.348  Sum_probs=46.9

Q ss_pred             ccCCCCCCEEECcCCccccccCccccccc-CCCCCCcEEEccCCcCCccc-chhccCCCCCCEEEcccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNNSI-FSSLGGLSSLRCLSLRSNRL  121 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~L~~N~l  121 (182)
                      +..+++|++|+++.|.+...|-.     + ..+.+|++|-|.+..+.-.- ...+..+|.++.|.++.|.+
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~-----lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKS-----LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             HhcCccceEeeccCCcCCCcccc-----CcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            45789999999999999865543     3 35678999988887775433 23455677778888877744

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=89.84  E-value=0.11  Score=42.25  Aligned_cols=13  Identities=31%  Similarity=0.503  Sum_probs=7.6

Q ss_pred             CCCcEEecCcccC
Q 039460          139 GLPFLEQTANRLS  151 (182)
Q Consensus       139 ~L~~l~l~~N~~~  151 (182)
                      +|+++.+.+|.++
T Consensus       271 ~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  271 SLEVLELAGNEIT  283 (382)
T ss_pred             CCceeccCcchhH
Confidence            5555666666555

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.44  E-value=0.71  Score=38.83  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc-ccccccccccccccCcCCCCCCCcEEecCc
Q 039460           81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS-NRLNGSVVIKVFWFDILDENGLPFLEQTAN  148 (182)
Q Consensus        81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N  148 (182)
                      +..+.++..|+++++.++ .+|.   -..+|+.|.+++ ++++ .+|..+.  .     +|+.|++.+|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~-----nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--E-----GLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--h-----hhhheEccCc
Confidence            555688999999999887 6672   234699999986 4443 5665431  2     5666666665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.84  E-value=0.11  Score=24.84  Aligned_cols=13  Identities=31%  Similarity=0.580  Sum_probs=4.8

Q ss_pred             CCCEEEccccccc
Q 039460          110 SLRCLSLRSNRLN  122 (182)
Q Consensus       110 ~L~~L~L~~N~l~  122 (182)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.28  E-value=2.9  Score=28.27  Aligned_cols=83  Identities=20%  Similarity=0.237  Sum_probs=37.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEcccccccccccc-cc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVI-KV  129 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~-~~  129 (182)
                      .|...++|+.+.+.. .+. .++..   .|..+++|+.+.+..+ +. .++. .|..++.++.+.+.. .+. .++. .+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~---~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGEN---AFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLK-SIGDNAF   77 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TT---TTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChh---hccccccccccccccc-cc-ccceeeeecccccccccccc-ccc-ccccccc
Confidence            345556677777663 344 24442   5666667777777664 44 3333 556666677777654 332 2232 23


Q ss_pred             cccCcCCCCCCCcEEecCc
Q 039460          130 FWFDILDENGLPFLEQTAN  148 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N  148 (182)
                      ..+.     +++.+.+..+
T Consensus        78 ~~~~-----~l~~i~~~~~   91 (129)
T PF13306_consen   78 SNCT-----NLKNIDIPSN   91 (129)
T ss_dssp             TT-T-----TECEEEETTT
T ss_pred             cccc-----cccccccCcc
Confidence            3344     5666666443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.23  E-value=4.2  Score=27.45  Aligned_cols=84  Identities=15%  Similarity=0.248  Sum_probs=46.7

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      ...|..++.|+.+.+..+ +. .++..   .|..+.+++.+.+.. .+. .++ ..|..+++|+.+++..+ +. .++..
T Consensus        28 ~~~F~~~~~l~~i~~~~~-~~-~i~~~---~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~   98 (129)
T PF13306_consen   28 ENAFSNCTSLKSINFPNN-LT-SIGDN---AFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-IT-EIGSS   98 (129)
T ss_dssp             TTTTTT-TT-SEEEESST-TS-CE-TT---TTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--B-EEHTT
T ss_pred             hhhccccccccccccccc-cc-cccee---eeecccccccccccc-ccc-ccccccccccccccccccCcc-cc-EEchh
Confidence            456778889999999875 54 35542   688888899999976 443 333 46677899999998765 43 34433


Q ss_pred             ccccCcCCCCCCCcEEecC
Q 039460          129 VFWFDILDENGLPFLEQTA  147 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~  147 (182)
                      ...-.     .++.+.+..
T Consensus        99 ~f~~~-----~l~~i~~~~  112 (129)
T PF13306_consen   99 SFSNC-----NLKEINIPS  112 (129)
T ss_dssp             TTTT------T--EEE-TT
T ss_pred             hhcCC-----CceEEEECC
Confidence            22212     456665543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.91  E-value=0.72  Score=22.83  Aligned_cols=17  Identities=35%  Similarity=0.444  Sum_probs=11.2

Q ss_pred             CCCEEEcccccccccccc
Q 039460          110 SLRCLSLRSNRLNGSVVI  127 (182)
Q Consensus       110 ~L~~L~L~~N~l~g~~p~  127 (182)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            5667777777776 5554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.33  E-value=1.4  Score=21.76  Aligned_cols=14  Identities=50%  Similarity=0.603  Sum_probs=7.4

Q ss_pred             CCCCEEECcCCccc
Q 039460           57 QQLESLDLIGNNIV   70 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~   70 (182)
                      .+|++|+++.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555555555553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=81.21  E-value=0.85  Score=36.86  Aligned_cols=63  Identities=21%  Similarity=0.227  Sum_probs=40.7

Q ss_pred             CCCCCcEEEccCCc-CCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcc
Q 039460           83 RLSNLKFLRLDFNS-FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANR  149 (182)
Q Consensus        83 ~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~  149 (182)
                      .+++|..|||+.+. ++...-..|.+++.|++|.++.+.  +.+|..+-.+.  ..++|.||++.+.-
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~--s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELN--SKPSLVYLDVFGCV  374 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeec--cCcceEEEEecccc
Confidence            45778888887754 443444566677888888877655  45676654443  23477888876643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 34/144 (23%), Positives = 51/144 (35%), Gaps = 31/144 (21%)

Query: 1   CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVE---------------- 44
            L +E   LI  K    D   L +W+         N C ++ V                 
Sbjct: 9   SLYREIHQLISFKDVLPDKNLLPDWSSN------KNPCTFDGVTCRDDKVTSIDLSSKPL 62

Query: 45  --KATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSI- 101
               +   S       LESL L  ++I G V           ++L  L L  NS +  + 
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-----FKCSASLTSLDLSRNSLSGPVT 117

Query: 102 -FSSLGGLSSLRCLSLRSNRLNGS 124
             +SLG  S L+ L++ SN L+  
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFP 141

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
              LE LD+  NN        G+  L   S L+ L +  N  +     ++   + L+ L+
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 116 LRSNRLNGSV 125
           + SN+  G +
Sbjct: 254 ISSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 55  PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCL 114
           P + L+ L L  N   G + +   G       L  L L  N F  ++    G  S L  L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACD---TLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 115 SLRSNRLNGSV 125
           +L SN  +G +
Sbjct: 324 ALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
             L  + L  N + G +       + RL NL  L+L  NSF+ +I + LG   SL  L L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 117 RSNRLNGSV 125
            +N  NG++
Sbjct: 546 NTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSI-FSSLGGLS 109
            L      L  LDL GN+  G V           S L+ L L  N+F+  +   +L  + 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 110 SLRCLSLRSNRLNGSV 125
            L+ L L  N  +G +
Sbjct: 344 GLKVLDLSFNEFSGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           S       LE LDL  N+I G               LK L +  N  +  +   +    +
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVG-WVLSDGCGELKHLAISGNKISGDV--DVSRCVN 201

Query: 111 LRCLSLRSNRLNGSV 125
           L  L + SN  +  +
Sbjct: 202 LEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS-SLRCLS 115
             LESL L  NN  G +  + L ++     LK L L FN F+  +  SL  LS SL  L 
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMR---GLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 116 LRSNRLNGSV 125
           L SN  +G +
Sbjct: 375 LSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
           + LE+L L  N++ G + +     LS  +NL ++ L  N     I   +G L +L  L L
Sbjct: 466 KTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 117 RSNRLNGSV 125
            +N  +G++
Sbjct: 522 SNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLR 117
           +L SL L  N + G + +     L  LS L+ L+L  N     I   L  + +L  L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 118 SNRLNGSV 125
            N L G +
Sbjct: 475 FNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
             +L  L L  N + G +  E    L  +  L+ L LDFN     I S L   ++L  +S
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQE----LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 116 LRSNRLNGSV 125
           L +NRL G +
Sbjct: 497 LSNNRLTGEI 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 54  TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113
            P   L+ L L  N   G +       LS  S L  L L FN  + +I SSLG LS LR 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 114 LSLRSNRLNGSV 125
           L L  N L G +
Sbjct: 447 LKLWLNMLEGEI 458

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSL---GGLSSLRCL 114
            L+ L++  N +    +  G     +L++L+ L L  NS + +         G   L+ L
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGG---LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 115 SLRSNRLNGSV 125
           ++  N+++G V
Sbjct: 184 AISGNKISGDV 194

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGG-LSSLRCLSL 116
           +L+ L++  N  VG +          L +L++L L  N F   I   L G   +L  L L
Sbjct: 248 ELKLLNISSNQFVGPIPP------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 117 RSNRLNGSV 125
             N   G+V
Sbjct: 302 SGNHFYGAV 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
                  ++      G              ++ FL + +N  +  I   +G +  L  L+
Sbjct: 607 LSTRNPCNITSRVYGGHTSPT----FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 116 LRSNRLNGS 124
           L  N ++GS
Sbjct: 663 LGHNDISGS 671

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
              +  LD+  N + G +  E    +  +  L  L L  N  + SI   +G L  L  L 
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 116 LRSNRLNGS 124
           L SN+L+G 
Sbjct: 687 LSSNKLDGR 695

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 32/148 (21%)

Query: 1   CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLE 60
           C  Q++ AL+Q+K    +   L +W              W  V      C   T   ++ 
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSW----LPTTDCCNRTWLGV-----LCDTDTQTYRVN 53

Query: 61  SLDLIGNNIVGCVE-NEGLGRLS----------------------RLSNLKFLRLDFNSF 97
           +LDL G N+         L  L                       +L+ L +L +   + 
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 98  NNSIFSSLGGLSSLRCLSLRSNRLNGSV 125
           + +I   L  + +L  L    N L+G++
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTL 141

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 8e-10
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
            QL  L +   N+ G + +     LS++  L  L   +N+ + ++  S+  L +L  ++ 
Sbjct: 101 TQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 117 RSNRLNGS 124
             NR++G+
Sbjct: 157 DGNRISGA 164

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 7e-07
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL-RCLS 115
           + L +LD   N + G +       +S L NL  +  D N  + +I  S G  S L   ++
Sbjct: 125 KTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 116 LRSNRLNGS 124
           +  NRL G 
Sbjct: 181 ISRNRLTGK 189

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
           +  + + L  N++        LG++    NL  L L  N    ++   L  L  L  L++
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 117 RSNRLNGSV 125
             N L G +
Sbjct: 276 SFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 59  LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118
           L  +DL  N + G              N + + L  NS    +   +G   +L  L LR+
Sbjct: 199 LAFVDLSRNMLEGDASVL----FGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253

Query: 119 NRLNGSV 125
           NR+ G++
Sbjct: 254 NRIYGTL 260

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 22/89 (24%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLS---------------------NLKFLRLDFN 95
             L  +   GN I G + +   G  S+L                      NL F+ L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207

Query: 96  SFNNSIFSSLGGLSSLRCLSLRSNRLNGS 124
                     G   + + + L  N L   
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFD 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
             F     L  L L+ N+I     N       +  NL  L L  N  +++   +   L +
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 111 LRCLSLRSNRLNG 123
           L+ L L +N++  
Sbjct: 147 LQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F+    LE LDL  N I   +  +       L N+  + L +N +     +S   + SL+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEW---RGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 113 CLSLRSNRLNG 123
            L LR   L  
Sbjct: 458 RLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGR----LSRLSNLKFLRLDFNSFNNSIFSSLG 106
            +    ++LE LDL  NN+    ++   G     L  LS+L  L L+ N F+        
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 107 GLSSLRCLSLRSNRLNG 123
            L  L+ + L  N LN 
Sbjct: 558 DLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 15/80 (18%), Positives = 25/80 (31%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           ++FT    L+ L L  +                 S L  L L  N  +     +   L  
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 111 LRCLSLRSNRLNGSVVIKVF 130
           L  L L  N +   +  + +
Sbjct: 407 LEVLDLGLNEIGQELTGQEW 426

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 5/117 (4%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           + F     L+ L L    +     +        L NL  L L  N+  N     L GL  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 111 LRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQ---TANRLSLESIDCIQDLIYL 164
           L  L L+ N L            I    GL  L      +N      ++  +DL  L
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           FT + QL SLD+  N I             +L  LK L L  N  +     +    ++L 
Sbjct: 45  FTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 113 CLSLRSNRLNG 123
            L L SN +  
Sbjct: 101 ELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
                 + L+ L L  N I   +++E L   +  S+LK L L  N            +  
Sbjct: 139 GTQVQLENLQELLLSNNKIQA-LKSEELDIFA-NSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 111 LRCLSLRSNRLNGSVVIKVFWFDIL 135
           L  L L + +L  S+  K+      
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELAN 221

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLR 117
            + +L L  + +     +       + +NL  L L +N+ N     S   L  L    L 
Sbjct: 223 SIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 118 SNRLNG 123
            N +  
Sbjct: 281 YNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRL-----SRLSNLKFLRLDFNSFNNSIFSSLGG 107
                 +  L+L  +     +    L ++       L  L+ L ++ N       +   G
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 108 LSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDL-----I 162
           L +L+ LSL ++  +   +     F  L  + L  L  T N++S    D    L     +
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNET-FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 163 YLGGN 167
            LG N
Sbjct: 411 DLGLN 415

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
              +  L+L  N +            +R S L  L + FN+ +         L  L+ L+
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 116 LRSNRLNG 123
           L+ N L+ 
Sbjct: 80  LQHNELSQ 87

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVEN--EGLGRLSRL---SNLKFLRLDFNSFNNSIFSSL 105
             F    QLE   L  NNI     +   GL  +  L    +     +   S       S 
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 106 GGLSSLRCLSLRSNRLNG 123
             L  L  L++  N + G
Sbjct: 326 QWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 55  PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCL 114
            +  L  LDL  NN+     +      + L  L++  L++N+  +    SL GL ++R L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDS----FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 115 SLRSNRLNGS 124
           +L+ +    S
Sbjct: 302 NLKRSFTKQS 311

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG---GLSSLRCL 114
            L+ L+L  N I              +  L  L L+      S+   L      +S+R L
Sbjct: 172 SLKKLELSSNQIKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 115 SLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYL 164
           SL +++L+         F  L    L  L+ + N L++   D    L  L
Sbjct: 228 SLSNSQLST---TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F   +QLE LD   +N+    E         L NL +L +       +      GLSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 113 CLSLRSNRLNGSVVIKVF 130
            L +  N    + +  +F
Sbjct: 449 VLKMAGNSFQENFLPDIF 466

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F  F +L+ LDL    I    +         LS+L  L L  N   +    +  GLSSL+
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 113 CLSLRSNRLNGS 124
            L      L   
Sbjct: 104 KLVAVETNLASL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
            +F     LE L + GN+       +       L NL FL L          ++   LSS
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 111 LRCLSLRSNRLNG 123
           L+ L++  N    
Sbjct: 496 LQVLNMSHNNFFS 508

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
            +FT  + L  LDL    +            + LS+L+ L +  N+F +        L+S
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 111 LRCLSLRSNRLNGS 124
           L+ L    N +  S
Sbjct: 520 LQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
             +     L +L L GN I        LG  S LS+L+ L     +  +     +G L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 111 LRCLSLRSNRLNGSVVIKVF 130
           L+ L++  N +    + + F
Sbjct: 126 LKELNVAHNLIQSFKLPEYF 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 4/66 (6%)

Query: 59  LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118
            ++LDL  N +                 L+ L L           +   LS L  L L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 119 NRLNGS 124
           N +   
Sbjct: 86  NPIQSL 91

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGG 107
           E S+F   + L  LD+   +             + LS+L+ L++  NSF  +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 108 LSSLRCLSLRSNRLNG 123
           L +L  L L   +L  
Sbjct: 469 LRNLTFLDLSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGL-S 109
           + F     L+ L++  NN               L++L+ L    N    S    L    S
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 110 SLRCLSLRSNRLNGSVVIKVFW 131
           SL  L+L  N    +   + F 
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFL 565

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 19/95 (20%), Positives = 23/95 (24%), Gaps = 13/95 (13%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLS-------------NLKFLRLDFNSF 97
            LF     + S  L+   I    +         L                   RL F S 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 98  NNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132
                 S   L SL  L L  N L+         F
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 5/78 (6%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGL--GRLSRLSNLKFLRLDFNSFN---NSIFSSL 105
           +       LE   L+          E      L  L NL          +   + I    
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 106 GGLSSLRCLSLRSNRLNG 123
             L+++   SL S  +  
Sbjct: 279 NCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN---SIFSSLGGLSSLRCL 114
           +L  L L  N     V    +  L+ L   + +  +F +  N      S+L GL +L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 115 SLRSNRLNGSVVIKVFWFD--------ILDENGLPFLEQTANRLSLESID 156
             R   L+  +   +  F+         L    +  ++  +     + ++
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSI-FSSLGGLS 109
                   L+ LDL  N ++    N        L  L+ L    ++      FS    L 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 110 SLRCLSLRSNRLNGS 124
           +L  L +       +
Sbjct: 422 NLIYLDISHTHTRVA 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 52  LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111
            F    QLE LDL    +      +       L  LK L L  +  + S      GL +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 112 RCLSLRSNRLNGSVVIKVFWFDIL 135
           + L+L+ N      + K      L
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTL 475

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
            LF     L+ L+L GN+       +    L  L  L+ L L F   ++    +   L  
Sbjct: 443 QLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501

Query: 111 LRCLSLRSNRLNG 123
           +  + L  NRL  
Sbjct: 502 MNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           + F  F  L+ LDL   ++     +E    L  LS LK L L  N F N    S     S
Sbjct: 272 NTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 111 LRCLSLRSNRLNGSVVIKVFW 131
           L  LS++ N     +      
Sbjct: 327 LTHLSIKGNTKRLELGTGCLE 347

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           +  +  + L+ L  I   I           L     L+ L L  N  ++           
Sbjct: 99  TALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 111 LRCLSLRSNRLNG 123
           L+ L  ++N ++ 
Sbjct: 155 LKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
               + L  LDL  ++I           L  LS+L+ L L +N   +    +      L 
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 113 CLSLRSNRLNG 123
            L L   RL  
Sbjct: 404 LLDLAFTRLKV 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F+    L  LDL    I   +  +          L  L L  N       ++L G  +L+
Sbjct: 53  FSRLINLTFLDLTRCQIYW-IHEDT---FQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 113 CLSLRSNRLNG 123
            L      ++ 
Sbjct: 109 HLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F    +L++L L  N ++   E      LS    LK L       ++  F  L    +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 113 CLSLRSNRLNG 123
            L L SN ++ 
Sbjct: 133 SLYLGSNHISS 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSF---NNSIFSSLGG 107
           S F     L+ L+L  + +    E         L  L+ L L  N F   N    +SL  
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 108 LSSLRCLSLRSNRLNG 123
           L  L  L L    L+ 
Sbjct: 475 LGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 59  LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118
            E L+   N +            SRL NL FL L           +      L  L L +
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 119 NRLNG 123
           N L  
Sbjct: 91  NPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
            +  Q L        +      +  +       +++ + L  + F N   ++    S L+
Sbjct: 224 NSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 113 CLSLRSNRLN 122
            L L +  L+
Sbjct: 282 ELDLTATHLS 291

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
              ++ L +   +            +S LSNL+ LR+      +    +L GL+SL  L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 116 LRSNRLNGSVV 126
           +  +  + S++
Sbjct: 119 ISHSAHDDSIL 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
            +    L  LD+  +      ++  L +++ L  +  + L +N     I   L  L  L+
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 113 CLSLRSNRLN 122
            L+++ + ++
Sbjct: 163 SLNIQFDGVH 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           + F   ++L+ LD   + +    E         L  L +L + + +          GL+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 111 LRCLSLRSNRLNGSVVIKVF 130
           L  L +  N    + +  VF
Sbjct: 450 LNTLKMAGNSFKDNTLSNVF 469

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSS-LGG 107
           E S F   ++L  LD+   N     +    G    L++L  L++  NSF ++  S+    
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 108 LSSLRCLSLRSNRLNG 123
            ++L  L L   +L  
Sbjct: 472 TTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           +     L +L L GN I            S L++L+ L        +     +G L +L+
Sbjct: 76  WHGLHHLSNLILTGNPIQS-FSPGSF---SGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 113 CLSLRSNRLNGSVVIKVF 130
            L++  N ++   +   F
Sbjct: 132 KLNVAHNFIHSCKLPAYF 149

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F+ F +L+ LDL    I    E         L +L  L L  N   +    S  GL+SL 
Sbjct: 52  FSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 113 CLSLRSNRLNG 123
            L     +L  
Sbjct: 108 NLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 21/94 (22%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRL---------------------SNLKF 89
            +F     L +L + GN+      +      + L                       L+ 
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 90  LRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG 123
           L +  N+      S    L SL  L    NR+  
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN-SIFSSLGGLS 109
             F+    LE+L  +   +           + +L  LK L +  N  ++  + +    L+
Sbjct: 98  GSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 110 SLRCLSLRSNRLNG 123
           +L  + L  N +  
Sbjct: 154 NLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
               +++DL  N +            S  S L++L L           +  GL  L  L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 116 LRSNRLNG 123
           L  N +  
Sbjct: 87  LTGNPIQS 94

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGR-LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
             + S+D   N I     N        +  N   + L +N             S +  + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 116 LRSNRL 121
           L +N +
Sbjct: 704 LSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 13/80 (16%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFN---------NSIFS 103
           ++  + L  ++L     +  + +     L  L  L+ L +  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 104 SLGGLSSLRCLSLRSNRLNG 123
                  ++   +  N L  
Sbjct: 543 DEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 5/71 (7%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
                  +++   +  NN+     +  L    ++  L  L    N        + G    
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQ---KMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 111 LRCLSLRSNRL 121
           L  L L  N++
Sbjct: 597 LTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 15/102 (14%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGR---------------LSRLSNLKFLRLDFNSF 97
                +L+ +    +                             S L +L  + L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 98  NNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENG 139
              +   L  L  L+ L++  NR   +  +K  W  + D+  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
            +L  LD + N +        L        L  L+LD+N               +  L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 117 RSNRLNG 123
             N+L  
Sbjct: 627 SHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 11/75 (14%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSF-------NNSIFSSLGGL 108
                ++ L  N I            +  S +  + L  N               +    
Sbjct: 672 GINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 109 SSLRCLSLRSNRLNG 123
             L  + LR N+L  
Sbjct: 728 YLLTTIDLRFNKLTS 742

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 9/73 (12%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGR----LSRLSNLKFLRLDFNSFNN-SIFSSLGGLSSL 111
            +++ +++  N  +   + +   +          ++ + + +N+     + +SL  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 112 RCLSLRSNRLNGS 124
             L    N+L G 
Sbjct: 333 GMLECLYNQLEGK 345

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 57  QQLESLDLIGNNIVGCVENEGLG---RLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113
             + ++D   N I                +  N+  + L  N  +          S L  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 114 LSLRSNRLNG 123
           ++L  N L  
Sbjct: 462 INLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
           ++L  L+ + N + G +             L  L L +N       +  G    +  LS 
Sbjct: 330 KKLGMLECLYNQLEGKLPA-----FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 117 RSNRLNG 123
             N+L  
Sbjct: 385 AHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 57  QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSL 116
           ++++ + +  NN+        L ++     L  L   +N        + G    L  L+L
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMK---KLGMLECLYNQL-EGKLPAFGSEIKLASLNL 360

Query: 117 RSNRLNG 123
             N++  
Sbjct: 361 AYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 57  QQLESLDLIGNNIVGCVENEGLG---------------RLSRLSNLKFLRLDFNSFNNSI 101
            +L    +  +  V     E                  +   L +L  + +        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 102 FSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQ 145
            + L  L  ++ +++  NR      +K  W  + D      ++ 
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 8/81 (9%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFN-------NSIFS 103
           +     +Q+E+L    N +              +S +  +   +N          + +  
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAK---SVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 104 SLGGLSSLRCLSLRSNRLNGS 124
           +     ++  ++L +N+++  
Sbjct: 428 TPFKGINVSSINLSNNQISKF 448

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 8/71 (11%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSF----NNSIFSSLGGLSSLRC 113
           ++  L L G    G V +     + +L+ L+ L L  +             +    S   
Sbjct: 82  RVTGLSLEGFGASGRVPDA----IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 114 LSLRSNRLNGS 124
                     +
Sbjct: 138 KQKMRMHYQKT 148

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 11/75 (14%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFN-------NSIFSSLGGL 108
              + S++L  N I    +       S  S L  + L  N               +    
Sbjct: 432 GINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 109 SSLRCLSLRSNRLNG 123
             L  + LR N+L  
Sbjct: 488 YLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 6/79 (7%), Positives = 23/79 (29%), Gaps = 12/79 (15%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSF--------NNSIFSS 104
           +   + L  +++     +  +       L  L  ++ + +  N          +    + 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 105 LGGLSSLRCLSLRSNRLNG 123
                 ++ + +  N L  
Sbjct: 301 APVGEKIQIIYIGYNNLKT 319

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           S F   +QL+ L+L        ++ E       L NL+ L L  +        +  GL  
Sbjct: 42  SSFPFLEQLQLLELGSQYTPLTIDKEAF---RNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 111 LRCLSLRSNRLNGSVV 126
           L  L L    L+ +V+
Sbjct: 99  LFELRLYFCGLSDAVL 114

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENE-GLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS 109
              +    LE L L  N +    E E        LS+L+ L L+ N  N+        L+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 110 SLRCLSLRSNRLN 122
           +LR LSL SNRL 
Sbjct: 505 ALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
            +F   + L+ L+L  N I    +         L NL+ L L +N       S+  GL  
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEA----FYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 111 LRCLSLRSNRLN 122
           +  + L+ N + 
Sbjct: 340 VAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 15/120 (12%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGL 108
               F     L+ L+L  N +              L  + ++ L  N        +   L
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 109 SSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRL-SLESIDCIQDLIYLGGN 167
             L+ L LR N L            I     +P +  + N+L +L  I+   +LI+L  N
Sbjct: 362 EKLQTLDLRDNALT----------TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 6/115 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS- 109
             F   + L  LDL  N I     +       +L++LK +    N         L  L  
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 110 -SLRCLSLRSNRLNGSVVIKVF-WFDILDENGLPFLEQTANRLSLESIDCIQDLI 162
            +L   SL +N L   V +      +      L  L+ + N  +++      + I
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSL----- 105
                   L+ L L  N    C  +      S   +L+ L L  N    +  + L     
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 106 GGLSSLRCLSLRSNRLN 122
            GLS L+ L L  N LN
Sbjct: 477 EGLSHLQVLYLNHNYLN 493

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                +L+ L++  N I        +  L+ LS L  L L+ N   N     +GGL++L 
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 113 CLSLRSNRLNG 123
            L L  N +  
Sbjct: 315 TLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                ++ SL+L  N+ +  +       LS ++ L +L +  +   +   + +  L+ L 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIANLTDLY 180

Query: 113 CLSLRSNRLNG 123
            LSL  N++  
Sbjct: 181 SLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                 L SL L  N I      E +  L+ L++L +     N   +   + +  ++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLN 224

Query: 113 CLSLRSNRLNG 123
            L + +N++  
Sbjct: 225 SLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
              LE L+L GN I        +  LS L  L  L +  N    +  S+L  L++LR L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 116 LRSNRLNG 123
           L  + ++ 
Sbjct: 117 LNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
               + +  L + G  +        +  +  L+NL++L L+ N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 113 CLSLRSNRLN 122
            L + +N++ 
Sbjct: 92  NLYIGTNKIT 101

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
            +F     L+SL++  N++V  + +      S L++L+ L L+  +  +    +L  L  
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV-YISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 111 LRCLSLRSNRLN 122
           L  L LR   +N
Sbjct: 178 LIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 52  LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111
                  L  L+L  N I   +E      L  L  L+ ++L           +  GL+ L
Sbjct: 243 AVRHLVYLRFLNLSYNPIS-TIEG---SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 112 RCLSLRSNRL 121
           R L++  N+L
Sbjct: 299 RVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGL 108
               F    +L+ L++     +  +    L       NL  L +   +     + ++  L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL----YGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 109 SSLRCLSLRSNRL 121
             LR L+L  N +
Sbjct: 248 VYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F  F  LE L+L  N +   VE    G  + L NL+ L L  N           GLS+L 
Sbjct: 52  FASFPHLEELELNENIVSA-VEP---GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107

Query: 113 CLSLRSNRLN 122
            L +  N++ 
Sbjct: 108 KLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 52  LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111
           +FT    L  LD+  N IV  + +        L NLK L +  N        +  GL+SL
Sbjct: 99  VFTGLSNLTKLDISENKIV-ILLD---YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154

Query: 112 RCLSLRSNRL 121
             L+L    L
Sbjct: 155 EQLTLEKCNL 164

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 9/72 (12%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN---SFNNSIFSSLGGLS 109
               + L  L +     +  +E      L  L  L+ L +  +         F       
Sbjct: 27  LPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSGLRFVAPDAFH---FTP 80

Query: 110 SLRCLSLRSNRL 121
            L  L+L  N L
Sbjct: 81  RLSRLNLSFNAL 92

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
             F     L  LDL     +  +     G    LSNL++L L   +       +L  L  
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISE---GAFEGLSNLRYLNLAMCNLRE--IPNLTPLIK 208

Query: 111 LRCLSLRSNRL 121
           L  L L  N L
Sbjct: 209 LDELDLSGNHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN---SFNNSIFSSLGGLS 109
           F   + LE L L  N+I        +G  + L+NL  L L  N   +  N  F     LS
Sbjct: 84  FKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLS 136

Query: 110 SLRCLSLRSNRL 121
            L+ L LR+N +
Sbjct: 137 KLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
            TP  +L+ LDL GN++         G    L +L+ L +  +       ++   L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 113 CLSLRSNRL 121
            ++L  N L
Sbjct: 259 EINLAHNNL 267

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
             F     L  LDL     +  +     G    L NLK+L L   +  +    +L  L  
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISE---GAFEGLFNLKYLNLGMCNIKD--MPNLTPLVG 219

Query: 111 LRCLSLRSNRL 121
           L  L +  N  
Sbjct: 220 LEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
            TP   LE L++ GN+          G    LS+LK L +  +  +    ++  GL+SL 
Sbjct: 214 LTPLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 113 CLSLRSNRL 121
            L+L  N L
Sbjct: 270 ELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN---SFNNSIFSSLGG 107
             F     LE L L  N+I   +E    G  + L++L  L L  N      +  F     
Sbjct: 93  DTFRHLHHLEVLQLGRNSI-RQIEV---GAFNGLASLNTLELFDNWLTVIPSGAFE---Y 145

Query: 108 LSSLRCLSLRSNRL 121
           LS LR L LR+N +
Sbjct: 146 LSKLRELWLRNNPI 159

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGG 107
           E S+F   + L  LD+   +          G  + LS+L+ L++  NSF  +        
Sbjct: 118 EFSVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 108 LSSLRCLSLRSNRL 121
           L +L  L L   +L
Sbjct: 174 LRNLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F   +QLE LD   +N+    E         L NL +L +       +      GLSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 113 CLSLRSNRLNGSVVIKVF 130
            L +  N    + +  +F
Sbjct: 154 VLKMAGNSFQENFLPDIF 171

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F    QL  L L  N +    +          ++LK+L L FN    ++ S+  GL  L 
Sbjct: 48  FDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104

Query: 113 CLSLRSNRL 121
            L  + + L
Sbjct: 105 HLDFQHSNL 113

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 52  LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111
           +FT  + L  LDL    +   +        + LS+L+ L +  N+F +        L+SL
Sbjct: 170 IFTELRNLTFLDLSQCQLEQ-LSP---TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 112 RCLSLRSNRL 121
           + L    N +
Sbjct: 226 QVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 52  LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111
           +F     LE L + GN+             + L NL FL L          ++   LSSL
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 112 RCLSLRSNRLN 122
           + L++  N   
Sbjct: 202 QVLNMSHNNFF 212

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGL 108
             SLF     L++L +        +        + L++L  L +   S  N    SL  +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 109 SSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151
             +  L+L  +       +   + DIL  + + +LE     L+
Sbjct: 172 RDIHHLTLHLSESA---FLLEIFADIL--SSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 6/122 (4%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F     L  L++   ++           L  + ++  L L  +     +      LSS+R
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQS----LKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 113 CLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLPRKT 172
            L LR   L       +   ++   + +  L    + L+ ES + +  L+     L    
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVS--SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 173 LQ 174
             
Sbjct: 258 FD 259

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN--SIFSSLG 106
            CS     + LE LDL  N +V               +L+ L L  N   +       L 
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNS-ACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 107 GLSSLRCLSLRSNRLN 122
            L +L  L +  N  +
Sbjct: 385 TLKNLTSLDISRNTFH 400

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 49  ECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGG 107
           E S+F   + L  LD+   +          G  + LS+L+ L++  NSF  +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 108 LSSLRCLSLRSNRLN 122
           L +L  L L   +L 
Sbjct: 469 LRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           S F   +QLE LD   +N+    E         L NL +L +       +      GLSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 111 LRCLSLRSNRLNGSVVIKVF 130
           L  L +  N    + +  +F
Sbjct: 447 LEVLKMAGNSFQENFLPDIF 466

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
            +F     LE L + GN+       +     + L NL FL L          ++   LSS
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 111 LRCLSLRSNRL 121
           L+ L++ SN+L
Sbjct: 496 LQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F  F +L+ LDL    I    +    G    LS+L  L L  N   +    +  GLSSL+
Sbjct: 48  FFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 113 CLSLRSNRL 121
            L      L
Sbjct: 104 KLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           +     L +L L GN I    ++  LG  S LS+L+ L     +  +     +G L +L+
Sbjct: 72  YQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 113 CLSLRSNRLN 122
            L++  N + 
Sbjct: 128 ELNVAHNLIQ 137

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                 +  L L GN +        +  L+ L NL +L LD N   +   SSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 113 CLSLRSNRLN 122
            LSL  N ++
Sbjct: 113 SLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 58  QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLR 117
           +L+SL L  N I        +  L  L  L+ L L  N    +  + L  L+ L  LSL 
Sbjct: 110 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 161

Query: 118 SNRL 121
            N++
Sbjct: 162 DNQI 165

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           SL      ++ LDL GN +      +    L+  + L+ L L  N         L  LS+
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 111 LRCLSLRSNRL 121
           LR L L +N +
Sbjct: 82  LRTLDLNNNYV 92

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN---SFNNSIFSSLGGLS 109
           F+  Q LE L L  N+IV  V+         ++ L+ L L  N    F   +      L 
Sbjct: 108 FSDLQALEVLLLYNNHIV-VVDR---NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 110 SLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLP 169
            L  L L SN+L   + +            LP   +    L    ++C   L  L  +  
Sbjct: 164 KLMLLDLSSNKLK-KLPLTDL-------QKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQ 215

Query: 170 RKTLQQ 175
            + L  
Sbjct: 216 YRQLSS 221

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 50  CSLFTPFQQLESLDLIGNNIVG---CVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG 106
           C     F  L +LDL  N  +G    +      +   L  L        + +    +   
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 107 GLSSLRCLSLRSNRLNGS 124
               L+ L L  N L  +
Sbjct: 226 ARVQLQGLDLSHNSLRDA 243

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
             +L  L L  NN+           L     L  + L +N     ++     +  L  L 
Sbjct: 225 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 116 LRSNRL 121
           + +NRL
Sbjct: 279 ISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           +L   F+Q+E L+L    I            +    ++ L + FN+           +  
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

Query: 111 LRCLSLRSNRL 121
           L  L L  N L
Sbjct: 119 LTVLVLERNDL 129

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 12/108 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                 L  L L  N+I   V+N   G L+   +L+ L L+ N     +   L     ++
Sbjct: 212 LKGLNNLAKLGLSFNSI-SAVDN---GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266

Query: 113 CLSLRSNRLNGSVVIKVFWF-DILDENGLPFLEQ---TANRLSLESID 156
            + L +N ++    I    F                  +N +    I 
Sbjct: 267 VVYLHNNNIS---AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                 LE LD+  N +        +  L++L+NL+ L    N  ++   + LG L++L 
Sbjct: 173 LANLTTLERLDISSNKV------SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 224

Query: 113 CLSLRSNRLNG 123
            LSL  N+L  
Sbjct: 225 ELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                 L  LDL  N I        L  LS L+ L  L+L  N  +N   S L GL++L 
Sbjct: 239 LASLTNLTDLDLANNQI------SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 290

Query: 113 CLSLRSNRLNG 123
            L L  N+L  
Sbjct: 291 NLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
                +L  + +  N I        +  L+ L+NL  L L  N   +     L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLN 137

Query: 113 CLSLRSNRLNG 123
            L L SN ++ 
Sbjct: 138 RLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
            T   Q+ +L      I      + +  +  L+NL  +    N   +   + L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 113 CLSLRSNRLNG 123
            + + +N++  
Sbjct: 94  DILMNNNQIAD 104

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           F+  Q L+ L +        + N        LS+L  L+LD+N F      +  GL++L 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 113 CLSLRSNRLNGSVVIKVFWFDIL 135
            L+L    L+   V+   +F  L
Sbjct: 107 VLTLTQCNLD-GAVLSGNFFKPL 128

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
             +L  L L  NN+           L     L  + L +N     ++     +  L  L 
Sbjct: 231 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 116 LRSNRL 121
           + +NRL
Sbjct: 285 ISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           +L   F+Q+E L+L    I            +    ++ L + FN+           +  
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 111 LRCLSLRSNRLN 122
           L  L L  N L+
Sbjct: 125 LTVLVLERNDLS 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
              + +L  L L  N I   +EN   G LS L  L+ L LD N  +  + + L  L  L+
Sbjct: 213 LLRYSKLYRLGLGHNQI-RMIEN---GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 113 CLSLRSNRL 121
            + L +N +
Sbjct: 268 VVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 56  FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115
            + L  L L  N I    +   L  L R S L  L L  N        SL  L +LR L 
Sbjct: 192 PETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 116 LRSNRL 121
           L +N+L
Sbjct: 248 LDNNKL 253

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
           FT    LE LDL  N  +  V+         L  L  L LD             GL++L+
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 113 CLSLRSNRL 121
            L L+ N L
Sbjct: 133 YLYLQDNAL 141

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 52  LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111
           L   F  LE L LI   +        +  L +L  LK L L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 112 RCLSLRSNRLN 122
             L+L  N+L 
Sbjct: 98  THLNLSGNKLK 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 51  SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110
           SL      ++ LDL GN +      +    L+  + L+ L L  N         L  LS+
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 111 LRCLSLRSNRLN 122
           LR L L +N + 
Sbjct: 82  LRTLDLNNNYVQ 93

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 52  LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111
           L   F++LE L  I   +   + N     L +L+ LK L L  N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGLT-SIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 112 RCLSLRSNRLN 122
             L+L  N++ 
Sbjct: 91  THLNLSGNKIK 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.49
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.45
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.43
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.41
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.41
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.38
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.38
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.37
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.36
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.21
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.2
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.2
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.02
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.0
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.97
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.2
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.9
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.78
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.33
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.81

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=5.8e-26  Score=180.62  Aligned_cols=137  Identities=26%  Similarity=0.434  Sum_probs=109.9

Q ss_pred             CcHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCcc--ccceEEcCC----C-----------------CCCccCC
Q 039460            1 CLEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQ--WEAVEKATY----E-----------------CSLFTPF   56 (182)
Q Consensus         1 c~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~--w~gv~c~~~----~-----------------~~~~~~l   56 (182)
                      |.++|++||++||+++ +|. .+.+|..+      .+||.  |.||+|...    .                 |..+..+
T Consensus         3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l   75 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTT------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCHHHHHHHHHHHHhcCCcc-cccCCCCC------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCC
Confidence            8999999999999999 665 78999875      68998  999999742    1                 3456778


Q ss_pred             CCCCEEECcC-CccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           57 QQLESLDLIG-NNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        57 ~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      ++|++|++++ |.+.+.+|.    .+..+++|++|++++|.+++.+|..|..+++|++|++++|.+++.+|..+..++  
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--  149 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP--  149 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--
T ss_pred             CCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC--
Confidence            8888888884 888887876    577888888888888888878888888888888888888888878888777777  


Q ss_pred             CCCCCCcEEecCcccCcc
Q 039460          136 DENGLPFLEQTANRLSLE  153 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~~~  153 (182)
                         +|++|++++|.+++.
T Consensus       150 ---~L~~L~L~~N~l~~~  164 (313)
T 1ogq_A          150 ---NLVGITFDGNRISGA  164 (313)
T ss_dssp             ---TCCEEECCSSCCEEE
T ss_pred             ---CCCeEECcCCcccCc
Confidence               677777777777644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=4e-23  Score=181.72  Aligned_cols=169  Identities=28%  Similarity=0.332  Sum_probs=117.1

Q ss_pred             cHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCccccceEEcCCC-------------------------------
Q 039460            2 LEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQWEAVEKATYE-------------------------------   49 (182)
Q Consensus         2 ~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~~~-------------------------------   49 (182)
                      .++|++||++||+++ +|. .+++|..+      .+||.|.||+|+...                               
T Consensus        10 ~~~~~~all~~k~~~~~~~-~l~~W~~~------~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l   82 (768)
T 3rgz_A           10 LYREIHQLISFKDVLPDKN-LLPDWSSN------KNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL   82 (768)
T ss_dssp             HHHHHHHHHHHHTTCSCTT-SSTTCCTT------SCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred             CHHHHHHHHHHHhhCCCcc-cccCCCCC------CCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence            468999999999999 887 89999865      689999999996321                               


Q ss_pred             ----------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhc-cCCCCCCEEEccc
Q 039460           50 ----------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSL-GGLSSLRCLSLRS  118 (182)
Q Consensus        50 ----------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~L~~  118 (182)
                                +..+..+++|++|+|++|.++|.+|..  ..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++
T Consensus        83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                      146677888888888888888877751  136777888888888888877777655 6777777777777


Q ss_pred             cccccccccc---ccccCcC-----------------CCCCCCcEEecCcccCccc--ccccccC-------CCCccCcC
Q 039460          119 NRLNGSVVIK---VFWFDIL-----------------DENGLPFLEQTANRLSLES--IDCIQDL-------IYLGGNLP  169 (182)
Q Consensus       119 N~l~g~~p~~---~~~l~~l-----------------~~~~L~~l~l~~N~~~~~~--~~~l~~L-------~~l~g~ip  169 (182)
                      |.+++..|..   +..++.|                 ...+|++|++++|.+++..  +..+++|       +.+++.+|
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc
Confidence            7777666554   3333311                 1235666666666665431  3333333       55566666


Q ss_pred             hhcccccCCC
Q 039460          170 RKTLQQTKIS  179 (182)
Q Consensus       170 ~~l~~l~~L~  179 (182)
                      ..++.+++|+
T Consensus       241 ~~l~~l~~L~  250 (768)
T 3rgz_A          241 RAISTCTELK  250 (768)
T ss_dssp             HHTTTCSSCC
T ss_pred             HHHhcCCCCC
Confidence            6676666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=4.7e-22  Score=171.76  Aligned_cols=160  Identities=16%  Similarity=0.175  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHhC-CC-CCC-------CCCCcCCCCCCCCCCCccc---cceEEcCCC----------------CCCcc
Q 039460            3 EQERSALIQLKHFF-ND-NQR-------LQNWADAANDENYSNCCQW---EAVEKATYE----------------CSLFT   54 (182)
Q Consensus         3 ~~~~~al~~~~~~~-~~-~~~-------l~~W~~~~~~~~~~~~c~w---~gv~c~~~~----------------~~~~~   54 (182)
                      ..|++||.+||+++ ++ +..       ..+|+.+      .++|.|   .||+|+..+                |+.++
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~------~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~  102 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN------KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG  102 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS------SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGG
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC------CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHh
Confidence            36999999999998 33 332       2379876      789999   999997542                77899


Q ss_pred             CCCCCCEEECcCCc------------------------------------------------------------------
Q 039460           55 PFQQLESLDLIGNN------------------------------------------------------------------   68 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~------------------------------------------------------------------   68 (182)
                      .|++|++|+|++|.                                                                  
T Consensus       103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  182 (636)
T 4eco_A          103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT  182 (636)
T ss_dssp             GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred             cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence            99999999999884                                                                  


Q ss_pred             ------------cccccCcccccccCCCCCCcEEEccCCcCCcc-----------------cchhcc--CCCCCCEEEcc
Q 039460           69 ------------IVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS-----------------IFSSLG--GLSSLRCLSLR  117 (182)
Q Consensus        69 ------------l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~-----------------~p~~~~--~l~~L~~L~L~  117 (182)
                                  ++| +|.    .+..+++|++|+|++|.++|.                 +|..++  .+++|++|+++
T Consensus       183 l~~l~l~~~~n~l~~-ip~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~  257 (636)
T 4eco_A          183 LKDTQIGQLSNNITF-VSK----AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY  257 (636)
T ss_dssp             CCTTTTTCCSCEEEE-ECG----GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             hhhhhhccccCCCcc-CCH----HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence                        445 776    588999999999999999986                 999998  99999999999


Q ss_pred             cccccccccccccccCcCCCCCCCcEEecCcc-cCc-c---ccccc------ccC-------CCCccCcCh--hcccccC
Q 039460          118 SNRLNGSVVIKVFWFDILDENGLPFLEQTANR-LSL-E---SIDCI------QDL-------IYLGGNLPR--KTLQQTK  177 (182)
Q Consensus       118 ~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~-~~~-~---~~~~l------~~L-------~~l~g~ip~--~l~~l~~  177 (182)
                      +|.+.|.+|..++.++     +|++|++++|. +++ .   .+..+      ++|       |.++ .+|.  .++.+++
T Consensus       258 ~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~  331 (636)
T 4eco_A          258 NCPNLTKLPTFLKALP-----EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK  331 (636)
T ss_dssp             CCTTCSSCCTTTTTCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred             CCcCCccChHHHhcCC-----CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence            9999999999999988     89999999998 887 3   23322      444       5666 6888  7888877


Q ss_pred             CC
Q 039460          178 IS  179 (182)
Q Consensus       178 L~  179 (182)
                      |+
T Consensus       332 L~  333 (636)
T 4eco_A          332 LG  333 (636)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.1e-21  Score=172.71  Aligned_cols=161  Identities=16%  Similarity=0.210  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCC--ccc------------cceEEcCCC----------------CC
Q 039460            3 EQERSALIQLKHFF-NDNQRLQNWADAANDENYSNC--CQW------------EAVEKATYE----------------CS   51 (182)
Q Consensus         3 ~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~--c~w------------~gv~c~~~~----------------~~   51 (182)
                      .+|+.||++||+++ +|     +|..+... ...+|  |.|            .||+|+..+                |+
T Consensus       268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~-~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~  341 (876)
T 4ecn_A          268 IKDYKALKAIWEALDGK-----NWRYYSGT-INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD  341 (876)
T ss_dssp             HHHHHHHHHHHHHTTGG-----GCCCCCSS-CSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred             hHHHHHHHHHHHHcCCC-----CCCcCCCc-ccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence            57999999999999 54     67664100 01245  999            999997421                78


Q ss_pred             CccCCCCCCEEEC-cCCccccc----------------------------------------------------------
Q 039460           52 LFTPFQQLESLDL-IGNNIVGC----------------------------------------------------------   72 (182)
Q Consensus        52 ~~~~l~~L~~L~L-s~n~l~g~----------------------------------------------------------   72 (182)
                      .++.|++|++|+| ++|.+.|.                                                          
T Consensus       342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~  421 (876)
T 4ecn_A          342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS  421 (876)
T ss_dssp             GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred             HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence            8999999999999 88877665                                                          


Q ss_pred             ------------------cCcccccccCCCCCCcEEEccCCcCCc-----------------ccchhcc--CCCCCCEEE
Q 039460           73 ------------------VENEGLGRLSRLSNLKFLRLDFNSFNN-----------------SIFSSLG--GLSSLRCLS  115 (182)
Q Consensus        73 ------------------~p~~~~~~~~~l~~L~~L~L~~n~l~g-----------------~~p~~~~--~l~~L~~L~  115 (182)
                                        +|.    .+..+++|++|+|++|.++|                 .+|..++  .+++|++|+
T Consensus       422 ~l~l~~l~l~~~~N~L~~IP~----~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          422 RISLKDTQIGNLTNRITFISK----AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCTTTTTCCSCEEEEECG----GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccchhhceeccccCcccchhH----HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                              555    58899999999999999998                 4999988  999999999


Q ss_pred             cccccccccccccccccCcCCCCCCCcEEecCcc-cCc-c---cccccc-------cC-------CCCccCcCh--hccc
Q 039460          116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANR-LSL-E---SIDCIQ-------DL-------IYLGGNLPR--KTLQ  174 (182)
Q Consensus       116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~-~~~-~---~~~~l~-------~L-------~~l~g~ip~--~l~~  174 (182)
                      |++|.+.|.+|..++.++     +|++|++++|+ +++ .   .+..+.       +|       |.++ .||.  .+++
T Consensus       498 Ls~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~  571 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK  571 (876)
T ss_dssp             EESCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT
T ss_pred             CcCCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc
Confidence            999999999999999998     89999999998 887 3   233322       44       5666 6888  7888


Q ss_pred             ccCCC
Q 039460          175 QTKIS  179 (182)
Q Consensus       175 l~~L~  179 (182)
                      +++|+
T Consensus       572 L~~L~  576 (876)
T 4ecn_A          572 MVKLG  576 (876)
T ss_dssp             CTTCC
T ss_pred             CCCCC
Confidence            88775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.4e-21  Score=156.35  Aligned_cols=122  Identities=16%  Similarity=0.197  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHHhC--CCCCCCCCCcCCCCCCCCCCCccccceEEcC----------CC--------------CCCccC
Q 039460            2 LEQERSALIQLKHFF--NDNQRLQNWADAANDENYSNCCQWEAVEKAT----------YE--------------CSLFTP   55 (182)
Q Consensus         2 ~~~~~~al~~~~~~~--~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~----------~~--------------~~~~~~   55 (182)
                      ..+|+.||++||.++  ++.+.+..|..+  .....++|.|.||.|..          ..              |..+..
T Consensus        25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~--~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~  102 (328)
T 4fcg_A           25 LRPYHDVLSQWQRHYNADRNRWHSAWRQA--NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR  102 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHCCTTHHHHHHHH--TTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGG
T ss_pred             CchHHHHHHHHHHhccCCchhhhhhhccc--ccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhh
Confidence            356899999999988  666667889521  01136899999999942          10              566777


Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      +++|++|++++|.++ .+|.    .+..+++|++|++++|.+. .+|..++.+++|++|++++|++.+.+|..++.
T Consensus       103 l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~  172 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS  172 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred             CCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence            889999999999998 6887    5888889999999999888 78888888888888888888888888877654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.4e-16  Score=121.16  Aligned_cols=133  Identities=20%  Similarity=0.144  Sum_probs=86.0

Q ss_pred             CCCccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCC
Q 039460           35 SNCCQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS  110 (182)
Q Consensus        35 ~~~c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~  110 (182)
                      ...|+|.+|.|....    |..+  .++|++|++++|.+++..|.    .|..+++|++|+|++|.+....+..|..+++
T Consensus        16 ~~~Cs~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           16 QCSCSGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPG----VFDSLINLKELYLGSNQLGALPVGVFDSLTQ   89 (229)
T ss_dssp             TCEEETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEeCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHH----HhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence            479999999998653    3222  26777788888887775554    5777777777777777776433345677777


Q ss_pred             CCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc--cccccccC-------CCCccCcC-hhcccccCCC
Q 039460          111 LRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLP-RKTLQQTKIS  179 (182)
Q Consensus       111 L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip-~~l~~l~~L~  179 (182)
                      |++|+|++|++++..+..+..++     +|++|++++|.++.-  .+..+.+|       |.+++ +| ..|..+++|+
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~  162 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLV-----HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT  162 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cCEEECCCCcCCccChhHhCcch-----hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC
Confidence            77777777777754444455666     777777777777621  23334444       45554 34 3355555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=1.9e-16  Score=118.28  Aligned_cols=106  Identities=24%  Similarity=0.273  Sum_probs=53.4

Q ss_pred             CccccceEEcCCC--------------------------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEE
Q 039460           37 CCQWEAVEKATYE--------------------------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFL   90 (182)
Q Consensus        37 ~c~w~gv~c~~~~--------------------------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L   90 (182)
                      .|.|.+|.|...+                          +..+..+++|++|++++|.+++ +|..   .+..+++|++|
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~---~~~~l~~L~~L   81 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNG---VFNKLTSLTYL   81 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTT---TTTTCTTCCEE
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChh---hcCCCCCcCEE
Confidence            3789999997542                          1224445555555555555553 2221   34455555555


Q ss_pred             EccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460           91 RLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus        91 ~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++++|.+++..+..|..+++|++|++++|++++..+..+..++     +|++|++++|.++
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~  137 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-----QLKDLRLYQNQLK  137 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-----cCCEEECCCCccc
Confidence            5555555533333345555555555555555533333333343     4444444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=5.8e-16  Score=118.94  Aligned_cols=119  Identities=20%  Similarity=0.131  Sum_probs=76.8

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  129 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR  129 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             HhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc
Confidence            456667777777777777764443    4667777777777777777555556677777777777777777444444555


Q ss_pred             cCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          132 FDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ++     +|++|++++|.++..   .+..+++|       |.+++..|..+..+++|+
T Consensus       130 l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          130 LT-----KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             CT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CC-----cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            65     777888888877743   24444444       555653344566666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=1.8e-15  Score=114.30  Aligned_cols=131  Identities=18%  Similarity=0.132  Sum_probs=89.5

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|..|.|...+    |..+.  +.+++|++++|.+++..+.    .|..+++|++|+|++|.+++..|..|..+++|++
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             ECCCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            689999998654    33232  5788888888888764443    5777888888888888888666778888888888


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      |+|++|.+++..+..+..++     +|++|++++|.+++.   .+..+++|       |.+++..+..|..+++|+
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLF-----SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EECCCCcCCccCHhHccCCC-----CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            88888888743333345566     788888888887754   34444444       555553334466666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.66  E-value=3e-16  Score=138.00  Aligned_cols=69  Identities=33%  Similarity=0.524  Sum_probs=26.8

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSV  125 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~  125 (182)
                      +..+++|++|++++|.++|.+|.    .+..+++|++|++++|.+.|.+|..++.+++|++|++++|.++|.+
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             HhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            33344444444444444433333    2333333333333333333333333333333333333333333333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=2.1e-15  Score=117.02  Aligned_cols=91  Identities=22%  Similarity=0.200  Sum_probs=48.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .|..+++|++|++++|.++. +|..   .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~-i~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  131 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQT-LPAG---IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS  131 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSC-CCTT---TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred             HhcCCCCCCEEECCCCccCe-eChh---hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc
Confidence            44555666666666666653 3331   3455566666666666655333334455555666666666555444444444


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++     +|++|++++|.++
T Consensus       132 l~-----~L~~L~Ls~n~l~  146 (270)
T 2o6q_A          132 LT-----KLTYLSLGYNELQ  146 (270)
T ss_dssp             CT-----TCCEEECCSSCCC
T ss_pred             Cc-----CCCEEECCCCcCC
Confidence            44     4555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=3.1e-15  Score=113.04  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=77.4

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|..+.|....    |..+  ...+++|++++|.+++..|..   .|..+++|++|+|++|.+++..+..|..+++|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ECCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            679999997643    2222  134566677777666543431   3556666666666666666544456666666666


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      |+|++|.+++..|..+..++     +|++|++++|.+++.   .+..+.+|       |.+++..|..|..+++|+
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             EECCCCccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            66666666655555555555     666666666666633   23333333       455554455566555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=2.2e-15  Score=111.55  Aligned_cols=92  Identities=22%  Similarity=0.271  Sum_probs=63.4

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|++|++++|.+++..|.    .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  125 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPN----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL  125 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred             cccCCCCCEEECCCCCCCCcCHh----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence            56667777777777777765554    46677777777777777776555566677777777777777776666666666


Q ss_pred             CcCCCCCCCcEEecCcccCcc
Q 039460          133 DILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +     +|+++++++|.+++.
T Consensus       126 ~-----~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          126 N-----SLTSLNLASNPFNCN  141 (192)
T ss_dssp             T-----TCCEEECTTCCBCCS
T ss_pred             C-----CCCEEEeCCCCccCc
Confidence            6     677777777777644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.60  E-value=2.4e-15  Score=119.27  Aligned_cols=125  Identities=22%  Similarity=0.326  Sum_probs=90.6

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCC-CCCEEEccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS-SLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~-~L~~L~L~~N~l~g~~p~~  128 (182)
                      |..+..+++|++|++++|.+++.+|.    .+..+++|++|++++|.+++.+|..++.++ +|++|++++|.++|.+|..
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            56778888888888888888887877    578888888888888888888888888887 8888888888888777766


Q ss_pred             ccccCcC-------------------CCCCCCcEEecCcccCcc--cccccccC-------CCCccCcChhcccccCCC
Q 039460          129 VFWFDIL-------------------DENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       129 ~~~l~~l-------------------~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +..+. |                   ...+|++|++++|.+++.  .+..+++|       |.+++.+|..++.+++|+
T Consensus       194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence            65543 1                   123667777777776643  22333333       666777887777777665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=2.9e-15  Score=126.37  Aligned_cols=89  Identities=24%  Similarity=0.174  Sum_probs=42.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVF  130 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~  130 (182)
                      .|..+++|++|++++|.+++..|.    .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++ .+|..++
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGD----AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             hhhcCCcccEEECCCCCcCccChh----hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence            344444444445544444443332    34445555555555555544333344555555555555555543 2334444


Q ss_pred             ccCcCCCCCCCcEEecCcc
Q 039460          131 WFDILDENGLPFLEQTANR  149 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~  149 (182)
                      .++     +|++|++++|.
T Consensus       121 ~l~-----~L~~L~L~~n~  134 (549)
T 2z81_A          121 NLT-----NLQTLRIGNVE  134 (549)
T ss_dssp             TCT-----TCCEEEEEESS
T ss_pred             ccC-----CccEEECCCCc
Confidence            444     45555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.60  E-value=4.8e-15  Score=126.20  Aligned_cols=120  Identities=15%  Similarity=0.065  Sum_probs=52.5

Q ss_pred             CCCCCCCcCCCCCCCCCCCcccc----ceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEE
Q 039460           19 NQRLQNWADAANDENYSNCCQWE----AVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFL   90 (182)
Q Consensus        19 ~~~l~~W~~~~~~~~~~~~c~w~----gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L   90 (182)
                      .+.++.|..+  -|....+|.+.    .|.|...+    |..+.  +.+++|||++|.|++..|.    .|..+++|++|
T Consensus        10 ~~~~~~~~~~--~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L   81 (635)
T 4g8a_A           10 DDKLAAANSS--IPESWEPCVEVVPNITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY----SFFSFPELQVL   81 (635)
T ss_dssp             -----------------CCSEEEETTTEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTT----TTTTCTTCCEE
T ss_pred             cchhhcccCC--CCCCCCCccccCCCCEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEE
Confidence            3445666553  11112456432    46786543    22221  2455555555555542222    45555555555


Q ss_pred             EccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460           91 RLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus        91 ~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +|++|.+++..|..|..+++|++|+|++|++++..+..|..++     +|++|++++|+++
T Consensus        82 ~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-----~L~~L~Ls~N~l~  137 (635)
T 4g8a_A           82 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-----SLQKLVAVETNLA  137 (635)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-----TCCEEECTTSCCC
T ss_pred             ECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-----CCCEEECCCCcCC
Confidence            5555555533334455555555555555555533333444444     4555555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=5.3e-15  Score=118.08  Aligned_cols=113  Identities=20%  Similarity=0.101  Sum_probs=75.1

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +++|++|++++|.++ .+|.    .+..+++|++|++++|.+. .+|..++.+++|++|++++|.+.+.+|..++.++  
T Consensus       182 l~~L~~L~L~~n~l~-~lp~----~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~--  253 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPA----SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA--  253 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCG----GGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC--
T ss_pred             CCCCCEEECcCCCcC-cchH----hhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCC--
Confidence            555555555555555 4444    4666667777777777776 4555667777777777777777777777766666  


Q ss_pred             CCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460          136 DENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                         +|++|++++|.+.+..   +..+++|       |.+.+.+|++++++++|.
T Consensus       254 ---~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          254 ---PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             ---CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             ---CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence               7788888887776553   3444444       566778888888888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=1.2e-14  Score=105.74  Aligned_cols=105  Identities=21%  Similarity=0.134  Sum_probs=89.1

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|..|.|....    |..+  .+.|++|+|++|.+++..|.    .|..+++|++|+|++|++++..+..|..+++|++
T Consensus         9 C~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            689999998654    3333  37899999999999986665    6899999999999999999666667899999999


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      |+|++|++++..+..+..++     +|++|++++|.++..
T Consensus        83 L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLK-----SLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCBCTT
T ss_pred             EECCCCccCEeCHHHhcCCC-----CCCEEEeCCCCCCCC
Confidence            99999999965555688888     999999999999844

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.57  E-value=2e-14  Score=122.65  Aligned_cols=106  Identities=18%  Similarity=0.096  Sum_probs=59.0

Q ss_pred             CCCccc----cceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhcc
Q 039460           35 SNCCQW----EAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG  106 (182)
Q Consensus        35 ~~~c~w----~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~  106 (182)
                      ..+|.+    ..|.|...+    |..+.  +++++|++++|.+++..+.    .|..+++|++|++++|.+++..|..|.
T Consensus         4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~i~~~~~~   77 (606)
T 3vq2_A            4 LNPCIEVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWH   77 (606)
T ss_dssp             --CCEEEETTTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCCceecCCCCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChh----hccCCccCcEEeCCCCcccccCHHHhh
Confidence            356655    257776543    22222  4566666666666554433    455666666666666666544455566


Q ss_pred             CCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          107 GLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       107 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .+++|++|++++|.+++..|..++.++     +|++|++++|.++
T Consensus        78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~  117 (606)
T 3vq2_A           78 GLHHLSNLILTGNPIQSFSPGSFSGLT-----SLENLVAVETKLA  117 (606)
T ss_dssp             TCTTCCEEECTTCCCCCCCTTSSTTCT-----TCCEEECTTSCCC
T ss_pred             chhhcCEeECCCCcccccChhhcCCcc-----cCCEEEccCCccc
Confidence            666666666666666655555555555     5555665555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.57  E-value=1.4e-15  Score=131.31  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             CCCccCCCCCCEEECcCCccccc-----------------cCcccccccC--CCCCCcEEEccCCcCCcccchhccCCCC
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGC-----------------VENEGLGRLS--RLSNLKFLRLDFNSFNNSIFSSLGGLSS  110 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~-----------------~p~~~~~~~~--~l~~L~~L~L~~n~l~g~~p~~~~~l~~  110 (182)
                      |..++.+++|++|++++|.++|.                 +|.    .+.  .+++|++|++++|.+.|.+|..|+.+++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            66788999999999999999986                 887    588  8999999999999999999999999999


Q ss_pred             CCEEEccccc-ccc-ccccccccc------CcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChh
Q 039460          111 LRCLSLRSNR-LNG-SVVIKVFWF------DILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRK  171 (182)
Q Consensus       111 L~~L~L~~N~-l~g-~~p~~~~~l------~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~  171 (182)
                      |++|++++|+ ++| .+|..++.+      +     +|++|++++|.++.-    .+..+++|       |.+.|.+| .
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-----~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGE-----KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-----TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCC-----CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            9999999998 998 899888776      6     788888888887711    23444444       56666777 6


Q ss_pred             cccccCCC
Q 039460          172 TLQQTKIS  179 (182)
Q Consensus       172 l~~l~~L~  179 (182)
                      ++.+++|+
T Consensus       349 ~~~l~~L~  356 (636)
T 4eco_A          349 FGSEIKLA  356 (636)
T ss_dssp             CEEEEEES
T ss_pred             hCCCCCCC
Confidence            66665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=1.1e-15  Score=133.82  Aligned_cols=74  Identities=27%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..++.|++|+|++|.+. .+|.    .+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..++.+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hccCCCCcEEECCCCCCC-CCCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            444555566666666555 3444    2334555555555555554 44544555555555555555554 444444444


Q ss_pred             C
Q 039460          133 D  133 (182)
Q Consensus       133 ~  133 (182)
                      .
T Consensus       293 ~  293 (727)
T 4b8c_D          293 F  293 (727)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.56  E-value=1.9e-14  Score=118.67  Aligned_cols=135  Identities=21%  Similarity=0.158  Sum_probs=81.7

Q ss_pred             CCccccc--eEEcCCCCCCcc-CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCC
Q 039460           36 NCCQWEA--VEKATYECSLFT-PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSL  111 (182)
Q Consensus        36 ~~c~w~g--v~c~~~~~~~~~-~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L  111 (182)
                      ..|.|.+  |.|...+...+. -.++|++|++++|.+++..|.    .+..+++|++|++++|.+.+.++ ..|..+++|
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET----SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT----TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh----HhccCccccEEECcCCcccceECcccccccccC
Confidence            4676666  888754311111 115677777777777765554    46777777777777777665553 356677777


Q ss_pred             CEEEcccccccccccccccccCcCCCCCCCcEEecCcccCccc-----ccccccC-------CCCccCcChh-cccccCC
Q 039460          112 RCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLES-----IDCIQDL-------IYLGGNLPRK-TLQQTKI  178 (182)
Q Consensus       112 ~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~-----~~~l~~L-------~~l~g~ip~~-l~~l~~L  178 (182)
                      ++|+|++|.+++..|..+..++     +|++|++++|.+++..     +..+++|       |.+.+..|.. ++.+++|
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLA-----NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCT-----TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             CEEeCCCCccCccChhhccCcc-----cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            7777777777766666666666     6677777777666421     3444444       4445544544 5555555


Q ss_pred             C
Q 039460          179 S  179 (182)
Q Consensus       179 ~  179 (182)
                      +
T Consensus       157 ~  157 (455)
T 3v47_A          157 H  157 (455)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2.7e-14  Score=103.94  Aligned_cols=108  Identities=18%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             CccccceEEcCCCCCC--ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEE
Q 039460           37 CCQWEAVEKATYECSL--FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCL  114 (182)
Q Consensus        37 ~c~w~gv~c~~~~~~~--~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  114 (182)
                      .|.|.+|.|...+...  ....++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..|..+++|++|
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence            3789999998653111  11236788888888888753333    46778888888888888875445556778888888


Q ss_pred             EcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460          115 SLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       115 ~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ++++|++++..+..+..++     +|++|++++|.+++.
T Consensus        82 ~l~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~~~  115 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLT-----QLKELALDTNQLKSV  115 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCC
T ss_pred             ECCCCCccccCHHHhhCCc-----ccCEEECcCCcceEe
Confidence            8888888755555556666     778888888877743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.55  E-value=2.6e-14  Score=114.35  Aligned_cols=103  Identities=16%  Similarity=0.039  Sum_probs=89.0

Q ss_pred             ccccceEEcCC-C----CCCccCCCCCCEEECcC-CccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCC
Q 039460           38 CQWEAVEKATY-E----CSLFTPFQQLESLDLIG-NNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL  111 (182)
Q Consensus        38 c~w~gv~c~~~-~----~~~~~~l~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L  111 (182)
                      |.|..|.|... .    |. +..+++|++|+|++ |.+++..+.    .|..+++|++|+|++|++++..|..|..+++|
T Consensus         8 C~~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L   82 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             ccCCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence            89999999876 4    66 88999999999996 999975544    69999999999999999998888899999999


Q ss_pred             CEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          112 RCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       112 ~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++|+|++|+|++ +|..+....     .|+.|++.+|.+.
T Consensus        83 ~~L~l~~N~l~~-~~~~~~~~~-----~L~~l~l~~N~~~  116 (347)
T 2ifg_A           83 SRLNLSFNALES-LSWKTVQGL-----SLQELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCSC-CCSTTTCSC-----CCCEEECCSSCCC
T ss_pred             CEEeCCCCccce-eCHHHcccC-----CceEEEeeCCCcc
Confidence            999999999984 565544333     5999999999988

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.53  E-value=3.5e-14  Score=113.93  Aligned_cols=117  Identities=22%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccc--cc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI--KV  129 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~  129 (182)
                      .+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+|.  .+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~  145 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLF  145 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSC
T ss_pred             HhccCCCCCEEECCCCccCccCHh----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhh
Confidence            455556666666666666554333    4566666666666666665333333566666666666666665 3443  44


Q ss_pred             cccCcCCCCCCCcEEecCcc-cCcc---cccccccC-------CCCccCcChhcccccCC
Q 039460          130 FWFDILDENGLPFLEQTANR-LSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKI  178 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~-~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L  178 (182)
                      ..++     +|++|++++|. ++..   .+..+++|       |.+.+..|..++.+++|
T Consensus       146 ~~l~-----~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          146 SHLT-----KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             TTCT-----TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             ccCC-----CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            4455     66666666663 3321   23333333       44555445555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.53  E-value=8.5e-14  Score=108.07  Aligned_cols=120  Identities=23%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      +.+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.
T Consensus        79 ~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  154 (272)
T 3rfs_A           79 SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD  154 (272)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc
Confidence            3566777788888888877764443    467778888888888887755555677778888888888887755555556


Q ss_pred             ccCcCCCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460          131 WFDILDENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      .++     +|++|++++|.+++..   +..+++|       |.+++..|..++.+++|+
T Consensus       155 ~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          155 KLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             TCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cCc-----cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            666     7788888888777442   3444444       566664444466666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=104.47  Aligned_cols=93  Identities=24%  Similarity=0.306  Sum_probs=70.1

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .|..+++|++|++++|.+++..+.    .|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+..
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  127 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG  127 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred             hhccCCCCCEEECCCCcCCEECHH----HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC
Confidence            467778888888888888765443    5777888888888888887666666777888888888888887766777777


Q ss_pred             cCcCCCCCCCcEEecCcccCcc
Q 039460          132 FDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ++     +|++|++++|.+++.
T Consensus       128 l~-----~L~~L~L~~N~l~~~  144 (220)
T 2v70_A          128 LS-----SVRLLSLYDNQITTV  144 (220)
T ss_dssp             CT-----TCSEEECTTSCCCCB
T ss_pred             Cc-----cCCEEECCCCcCCEE
Confidence            66     777788877777744

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=1.7e-13  Score=100.01  Aligned_cols=105  Identities=19%  Similarity=0.126  Sum_probs=85.2

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |....|.|....    |..+.  ++|++|++++|.+++..|.    .|..+++|++|+|++|++++..+..|..+++|++
T Consensus        12 C~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           12 CDQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             ECSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ECCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            455667777543    44343  7899999999999986666    6899999999999999999654456789999999


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      |+|++|++++..+..+..++     +|++|++++|.+...
T Consensus        86 L~L~~N~l~~l~~~~~~~l~-----~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLK-----SLTHIYLYNNPWDCE  120 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCT-----TCSEEECCSSCBCTT
T ss_pred             EECCCCccceeCHHHhcccc-----CCCEEEeCCCCcccc
Confidence            99999999954444577787     999999999998843

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=8.7e-14  Score=103.11  Aligned_cols=102  Identities=23%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|..|.|....    |..+  .+.|++|++++|.++ .+|.    .+..+++|++|+|++|.+++..+..|..+++|++
T Consensus        10 C~~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             eCCCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            578888887543    2222  135555555555555 3443    3555555555555555555444445555555555


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      |+|++|++++..|..+..++     +|++|++++|.++
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~-----~L~~L~L~~N~l~  115 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLK-----SLRLLSLHGNDIS  115 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCT-----TCCEEECCSSCCC
T ss_pred             EECCCCccCEeCHHHhCCCC-----CCCEEECCCCCCC
Confidence            55555555544444454444     5555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.51  E-value=8.5e-14  Score=108.06  Aligned_cols=91  Identities=23%  Similarity=0.270  Sum_probs=47.6

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus       104 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  179 (272)
T 3rfs_A          104 VFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK  179 (272)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             HhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence            345566666666666666543332    3455555666666666555444444455555555555555555433333444


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++     +|++|++++|.++
T Consensus       180 l~-----~L~~L~L~~N~l~  194 (272)
T 3rfs_A          180 LT-----QLKDLRLYQNQLK  194 (272)
T ss_dssp             CT-----TCCEEECCSSCCS
T ss_pred             Cc-----cCCEEECCCCcCC
Confidence            44     4444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=5.9e-14  Score=99.32  Aligned_cols=90  Identities=21%  Similarity=0.256  Sum_probs=52.7

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccc-ccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGS-VVIKV  129 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~  129 (182)
                      ..+..+++|++|++++|.+++. +     .+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .|..+
T Consensus        36 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~  109 (149)
T 2je0_A           36 GLTDEFEELEFLSTINVGLTSI-A-----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL  109 (149)
T ss_dssp             SCCTTCTTCCEEECTTSCCCCC-T-----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred             HHHhhcCCCcEEECcCCCCCCc-h-----hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence            3445566666666666666543 2     356666666666666666655555555566666666666666542 23555


Q ss_pred             cccCcCCCCCCCcEEecCcccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..++     +|+++++++|.++
T Consensus       110 ~~l~-----~L~~L~l~~N~l~  126 (149)
T 2je0_A          110 KKLE-----NLKSLDLFNCEVT  126 (149)
T ss_dssp             GGCT-----TCCEEECTTCGGG
T ss_pred             hhCC-----CCCEEeCcCCccc
Confidence            5555     5666666666555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=3.4e-13  Score=108.78  Aligned_cols=103  Identities=23%  Similarity=0.192  Sum_probs=50.7

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccchhccCCCCCC
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFSSLGGLSSLR  112 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~  112 (182)
                      |.+..|.|....    |..+.  ..+++|+|++|.+++..+.    .+. .+++|++|+|++|.+++..+..|..+++|+
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ECCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            678889997643    22111  2345555555555543222    233 455555555555555533334455555555


Q ss_pred             EEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          113 CLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       113 ~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +|+|++|++++..+..+..++     +|++|++++|.++
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~i~  125 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSDLQ-----ALEVLLLYNNHIV  125 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCC
T ss_pred             EEECCCCcCCcCCHHHhCCCc-----CCCEEECCCCccc
Confidence            555555555433333344444     4444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=2e-13  Score=102.99  Aligned_cols=95  Identities=27%  Similarity=0.287  Sum_probs=74.0

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|+|++|.+++..|.    .|..+++|++|+|++|.++...+..|..+++|++|+|++|++++..|..+
T Consensus        49 ~~~~~~l~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  124 (220)
T 2v9t_B           49 PGAFSPYKKLRRIDLSNNQISELAPD----AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF  124 (220)
T ss_dssp             TTSSTTCTTCCEEECCSSCCCEECTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             HhHhhCCCCCCEEECCCCcCCCcCHH----HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence            44677788888888888888876565    58888888888888888884434456788888888888888887777777


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ..++     +|++|++++|.++..
T Consensus       125 ~~l~-----~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B          125 QDLH-----NLNLLSLYDNKLQTI  143 (220)
T ss_dssp             TTCT-----TCCEEECCSSCCSCC
T ss_pred             CCCC-----CCCEEECCCCcCCEE
Confidence            7777     788888888887744

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.49  E-value=2.2e-13  Score=106.05  Aligned_cols=41  Identities=29%  Similarity=0.334  Sum_probs=16.1

Q ss_pred             CCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           82 SRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        82 ~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  142 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ  142 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence            33334444444444433333333333444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=1.8e-13  Score=117.22  Aligned_cols=65  Identities=22%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      ..+++|++|++++|.+++..|.    .|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.++
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  136 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  136 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence            3445555555555555543332    3444555555555555554433444444444444444444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.49  E-value=3.9e-13  Score=104.23  Aligned_cols=91  Identities=25%  Similarity=0.252  Sum_probs=45.2

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  122 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH  122 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred             HhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc
Confidence            344445555555555555432222    3445555555555555555444444555555555555555554333334444


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++     +|++|++++|.++
T Consensus       123 l~-----~L~~L~l~~n~l~  137 (276)
T 2z62_A          123 LK-----TLKELNVAHNLIQ  137 (276)
T ss_dssp             CT-----TCCEEECCSSCCC
T ss_pred             CC-----CCCEEECcCCccc
Confidence            44     5566666666555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.48  E-value=3e-13  Score=112.40  Aligned_cols=92  Identities=26%  Similarity=0.257  Sum_probs=54.5

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..|..+++|++|+|++|.+++..|.    .|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..+.
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             hHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence            3455566666666666666654444    466666666666666666533333455666666666666666655555555


Q ss_pred             ccCcCCCCCCCcEEecCcccC
Q 039460          131 WFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .++     +|++|++++|.++
T Consensus       126 ~l~-----~L~~L~l~~n~l~  141 (477)
T 2id5_A          126 DLY-----NLKSLEVGDNDLV  141 (477)
T ss_dssp             TCT-----TCCEEEECCTTCC
T ss_pred             ccc-----cCCEEECCCCccc
Confidence            555     5566666666555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.48  E-value=2e-13  Score=116.22  Aligned_cols=121  Identities=20%  Similarity=0.158  Sum_probs=98.2

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|+|++|.|++..|.    .|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+
T Consensus        69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~  144 (635)
T 4g8a_A           69 SYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI  144 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCC
T ss_pred             HHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhh
Confidence            56799999999999999999974443    68999999999999999996556689999999999999999997666678


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChhcccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +.++     +|++|++++|.++..    .+..+++|       |.+++..|.++..+.++.
T Consensus       145 ~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          145 GHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             TTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             hcCc-----ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence            8888     999999999998742    34555555       566665566677666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.47  E-value=4e-13  Score=103.00  Aligned_cols=114  Identities=21%  Similarity=0.217  Sum_probs=93.6

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD  136 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~  136 (182)
                      +.++.|++++|.+++..+.    .+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+..+..++   
T Consensus        35 ~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---  107 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDA----TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT---  107 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred             CCCCEEEccCCCcCccCHh----HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC---
Confidence            5899999999999986665    689999999999999999987778899999999999999999966666777777   


Q ss_pred             CCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460          137 ENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       137 ~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                        +|++|++++|.++...   +..+.+|       |.+++..|..|+.+++|+
T Consensus       108 --~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A          108 --QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             --TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             --CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence              9999999999998542   4445555       666663333587777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.47  E-value=3.5e-13  Score=104.94  Aligned_cols=121  Identities=17%  Similarity=0.126  Sum_probs=89.1

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+.+..+..|+.+++|++|++++|++++..+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence            44567778888888888888765554    57889999999999999986555668889999999999999985545557


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ..++     +|++|++++|.+++.   .+..+++|       |.+.+..+..+..+++|+
T Consensus       174 ~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          174 RGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             TTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             cCcc-----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence            7777     888999999988854   34444444       556653334477777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.46  E-value=3.6e-13  Score=105.83  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=71.4

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc-ccchhccCCCCCCEEEccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN-SIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      .+..+++|++|++++|.+.+..|.    .+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+.
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  196 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  196 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             hhhhccCCCEEECCCCcCCccchh----hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence            455566666666666666654444    45666667777777766664 4566666677777777777777655566666


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccc
Q 039460          131 WFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQ  175 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l  175 (182)
                      .++     +|++|++++|.++..   .+..+++|       |.+.+..|..+..+
T Consensus       197 ~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          197 SLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             TCT-----TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             CCC-----CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            665     677777777777643   23334444       55666666666555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.46  E-value=6.7e-13  Score=98.83  Aligned_cols=114  Identities=23%  Similarity=0.160  Sum_probs=89.5

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      .++|++|++++|.+++..+.    .+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..++  
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--  100 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT--  100 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--
T ss_pred             CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc--
Confidence            35799999999999964443    578999999999999999965555678999999999999999965555567777  


Q ss_pred             CCCCCCcEEecCcccCcc---cccccccC-------CCCccCcCh-hcccccCCC
Q 039460          136 DENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPR-KTLQQTKIS  179 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~-~l~~l~~L~  179 (182)
                         +|++|++++|.++..   .+..+.+|       |.+++ +|. .+..+++|+
T Consensus       101 ---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~  151 (208)
T 2o6s_A          101 ---QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQ  151 (208)
T ss_dssp             ---TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC
T ss_pred             ---CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCcc
Confidence               999999999999854   24555555       56665 454 477777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.4e-13  Score=99.25  Aligned_cols=92  Identities=24%  Similarity=0.249  Sum_probs=60.0

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccc-cccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGS-VVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~  128 (182)
                      +..+..+++|++|++++|.+++. +     .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++. .+..
T Consensus        42 ~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  115 (168)
T 2ell_A           42 EGLTAEFVNLEFLSLINVGLISV-S-----NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP  115 (168)
T ss_dssp             SSCCGGGGGCCEEEEESSCCCCC-S-----SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGG
T ss_pred             HHHHHhCCCCCEEeCcCCCCCCh-h-----hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHH
Confidence            33456667777777777777653 2     366777777777777777655666666677777777777777642 1145


Q ss_pred             ccccCcCCCCCCCcEEecCcccCc
Q 039460          129 VFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      +..++     +|++|++++|.++.
T Consensus       116 l~~l~-----~L~~L~l~~N~l~~  134 (168)
T 2ell_A          116 LKKLE-----CLKSLDLFNCEVTN  134 (168)
T ss_dssp             GSSCS-----CCCEEECCSSGGGT
T ss_pred             HhcCC-----CCCEEEeeCCcCcc
Confidence            55555     67777777777663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.46  E-value=3.3e-13  Score=106.03  Aligned_cols=67  Identities=22%  Similarity=0.279  Sum_probs=34.2

Q ss_pred             cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-cccccccccCcCCCCCCCcEEecCcccCc
Q 039460           81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus        81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..++     +|++|++++|.++.
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~  189 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQ  189 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCE
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-----CCCEEECCCCCcCC
Confidence            3444445555555554444444444555555555555555543 3444444444     56666666666553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.46  E-value=2.2e-13  Score=116.18  Aligned_cols=120  Identities=20%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|++++|.+++..|.    .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..+
T Consensus        49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~  124 (606)
T 3vq2_A           49 SYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI  124 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred             hhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc
Confidence            44677888888888888888875555    57888888888888888887778888888888888888888886655777


Q ss_pred             cccCcCCCCCCCcEEecCcccCc----ccccccccC-------CCCccCcChhcccccCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSL----ESIDCIQDL-------IYLGGNLPRKTLQQTKI  178 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~----~~~~~l~~L-------~~l~g~ip~~l~~l~~L  178 (182)
                      +.++     +|++|++++|.+++    ..+..+++|       |.+.+..|..++.+++|
T Consensus       125 ~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          125 GQLI-----TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             TTCT-----TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             CCCC-----CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            7777     78888888888763    235555555       45555445556655544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.45  E-value=8.8e-13  Score=109.17  Aligned_cols=70  Identities=29%  Similarity=0.249  Sum_probs=44.8

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG  123 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g  123 (182)
                      +..|..+++|++|+|++|.+++..|.    .|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChh----hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            34556666777777777776654443    46667777777777777664444456666777777777776663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.45  E-value=1.1e-12  Score=101.55  Aligned_cols=119  Identities=24%  Similarity=0.224  Sum_probs=90.9

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..|..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence            3467889999999999999864333    578899999999999999977677788999999999999999855445567


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcCh-hcccccCCC
Q 039460          131 WFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPR-KTLQQTKIS  179 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~-~l~~l~~L~  179 (182)
                      .++     +|++|++++|.++..   .+..+++|       |.+++ +|. .+..+++|+
T Consensus       155 ~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~  208 (270)
T 2o6q_A          155 KLT-----SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLK  208 (270)
T ss_dssp             TCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC
T ss_pred             CCc-----ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCC
Confidence            777     899999999988844   24445555       55555 554 366666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.44  E-value=8.1e-13  Score=100.21  Aligned_cols=102  Identities=21%  Similarity=0.224  Sum_probs=82.8

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|++++|.++. +|..   .|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++ .+|..+
T Consensus        57 ~~~~~~l~~L~~L~L~~N~l~~-i~~~---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~  131 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSNQLGA-LPVG---VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI  131 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred             HHHhhCccCCcEEECCCCCCCC-cChh---hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence            5568889999999999999975 5542   5788999999999999998655666788999999999999998 888888


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL  161 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L  161 (182)
                      ..++     +|++|++++|.++..   .+..+++|
T Consensus       132 ~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A          132 ERLT-----HLTHLALDQNQLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             GGCT-----TCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCC-----CCCEEECCCCcCCccCHHHHhCCCCC
Confidence            8887     889999999988844   34444554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.43  E-value=5.8e-13  Score=98.41  Aligned_cols=114  Identities=19%  Similarity=0.181  Sum_probs=94.6

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|..|.|....    |..+.  ..+++|++++|.+++..+..   .+..+++|++|+|++|.+++..|..|..+++|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             ECCCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence            789999998654    33333  38999999999998755431   3789999999999999999888999999999999


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL  161 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L  161 (182)
                      |+|++|++++..|..+..++     +|++|++++|++++.   .+..+++|
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLH-----QLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCT-----TCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             EECCCCcCCccCHHHhcCCC-----CCCEEECCCCcCCeeCHHHhhcCCCC
Confidence            99999999988887788888     999999999999955   34444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.43  E-value=4.8e-13  Score=114.08  Aligned_cols=93  Identities=22%  Similarity=0.166  Sum_probs=53.8

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..|..+++|++|++++|.+++..|.    .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..+.
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~  126 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH  126 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred             hHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence            3455555666666666666554444    455666666666666666555555566666666666666666544344455


Q ss_pred             ccCcCCCCCCCcEEecCcccCc
Q 039460          131 WFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      .++     +|++|++++|.+++
T Consensus       127 ~l~-----~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          127 NQK-----TLESLYLGSNHISS  143 (606)
T ss_dssp             TCT-----TCCEEECCSSCCCC
T ss_pred             cCC-----cccEEECCCCcccc
Confidence            555     66666666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.42  E-value=1e-12  Score=108.34  Aligned_cols=111  Identities=24%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..|..+
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             hhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence            55677788888888888888876665    57888888888888888876667788888888888888888887777777


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLP  169 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip  169 (182)
                      ..++     +|++|++++|+++..   .+..+++|       |.+++.+|
T Consensus       368 ~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          368 LGLP-----NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccc-----cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            7777     788888888888743   23444444       56666666

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=1e-12  Score=101.83  Aligned_cols=85  Identities=19%  Similarity=0.120  Sum_probs=42.6

Q ss_pred             CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460           58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE  137 (182)
Q Consensus        58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~  137 (182)
                      .|++|++++|.+++..+.    .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..++    
T Consensus        29 ~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----  100 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS----  100 (276)
T ss_dssp             TCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT----
T ss_pred             CccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc----
Confidence            355555555555543222    345555555555555555533333455555555555555555544444444444    


Q ss_pred             CCCCcEEecCcccC
Q 039460          138 NGLPFLEQTANRLS  151 (182)
Q Consensus       138 ~~L~~l~l~~N~~~  151 (182)
                       +|++|++++|.++
T Consensus       101 -~L~~L~l~~n~l~  113 (276)
T 2z62_A          101 -SLQKLVAVETNLA  113 (276)
T ss_dssp             -TCCEEECTTSCCC
T ss_pred             -cccEEECCCCCcc
Confidence             5555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.41  E-value=1.9e-12  Score=101.58  Aligned_cols=86  Identities=26%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +++|++|++++|.++ .+|.    .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..++  
T Consensus        76 l~~L~~L~Ls~N~l~-~l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--  148 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQ-SLPL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP--  148 (290)
T ss_dssp             CTTCCEEECCSSCCS-SCCC----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--
T ss_pred             CCcCCEEECCCCcCC-cCch----hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc--
Confidence            344444444444444 2343    345555556666666655543344555556666666666665543333344444  


Q ss_pred             CCCCCCcEEecCcccC
Q 039460          136 DENGLPFLEQTANRLS  151 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~  151 (182)
                         +|+.|++++|+++
T Consensus       149 ---~L~~L~L~~N~l~  161 (290)
T 1p9a_G          149 ---KLEKLSLANNNLT  161 (290)
T ss_dssp             ---TCCEEECTTSCCS
T ss_pred             ---CCCEEECCCCcCC
Confidence               5666666666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=109.89  Aligned_cols=91  Identities=21%  Similarity=0.243  Sum_probs=68.1

Q ss_pred             cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc--ccchhccCCCCCCEEEccccccccccccc-cc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN--SIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VF  130 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~  130 (182)
                      ..+++|++|++++|.+++.+|.    .+..+++|++|++++|.+.+  .+|..+..+++|++|++++|.+++.+|.. +.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             hhCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence            5678888888888888887776    57888888888888888875  56677888888888888888888767754 44


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc
Q 039460          131 WFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      .++     +|+++++++|.+++.
T Consensus       397 ~l~-----~L~~L~Ls~N~l~~~  414 (520)
T 2z7x_B          397 WTK-----SLLSLNMSSNILTDT  414 (520)
T ss_dssp             CCT-----TCCEEECCSSCCCGG
T ss_pred             cCc-----cCCEEECcCCCCCcc
Confidence            444     566666666666544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.41  E-value=9.5e-13  Score=97.44  Aligned_cols=87  Identities=20%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.++. ++     .+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+..
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATN-YN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSC-CG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             HHhcCCCCCEEEccCCCCCc-ch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            45566667777777765542 22     3666677777777777766656666666777777777777776656666666


Q ss_pred             cCcCCCCCCCcEEecCcc
Q 039460          132 FDILDENGLPFLEQTANR  149 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~  149 (182)
                      ++     +|++|++++|.
T Consensus       135 l~-----~L~~L~L~~n~  147 (197)
T 4ezg_A          135 LP-----KVNSIDLSYNG  147 (197)
T ss_dssp             CS-----SCCEEECCSCT
T ss_pred             CC-----CCCEEEccCCC
Confidence            65     66677776665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.41  E-value=9.3e-13  Score=116.91  Aligned_cols=94  Identities=23%  Similarity=0.228  Sum_probs=49.7

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-  128 (182)
                      +..|..+++|++|++++|.+.+.+++.   .|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++.+|.. 
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~  117 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKE---AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG  117 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTT---TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHH---HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence            344555555555555555444444321   4555555555555555555545555555555555555555555544443 


Q ss_pred             -ccccCcCCCCCCCcEEecCcccC
Q 039460          129 -VFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       129 -~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                       +..++     +|++|++++|.++
T Consensus       118 ~~~~L~-----~L~~L~Ls~N~l~  136 (844)
T 3j0a_A          118 YFRNLK-----ALTRLDLSKNQIR  136 (844)
T ss_dssp             CCSSCS-----SCCEEEEESCCCC
T ss_pred             cccccC-----CCCEEECCCCccc
Confidence             44444     5555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.41  E-value=8.6e-13  Score=114.02  Aligned_cols=91  Identities=27%  Similarity=0.208  Sum_probs=46.3

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      |..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..++.+
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  120 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ  120 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred             HhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence            44455555555555555544333    34455555555555555552222245555555555555555554333445444


Q ss_pred             CcCCCCCCCcEEecCcccCc
Q 039460          133 DILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~  152 (182)
                      +     +|++|++++|.+++
T Consensus       121 ~-----~L~~L~Ls~n~l~~  135 (680)
T 1ziw_A          121 K-----NLITLDLSHNGLSS  135 (680)
T ss_dssp             T-----TCCEEECCSSCCSC
T ss_pred             C-----CCCEEECCCCcccc
Confidence            4     55566666555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.41  E-value=1.5e-12  Score=102.23  Aligned_cols=117  Identities=21%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..+..+++|++|++++|.+++ ++.     ...+++|++|++++|.+. .+|..+..+++|++|++++|++++..|..+
T Consensus        48 ~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~  120 (290)
T 1p9a_G           48 LATLMPYTRLTQLNLDRAELTK-LQV-----DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL  120 (290)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCE-EEC-----CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred             HHHhhcCCCCCEEECCCCccCc-ccC-----CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH
Confidence            3456677788888888888775 443     367788888888888887 778888888899999999999886556677


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChh-cccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRK-TLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~-l~~l~~L~  179 (182)
                      ..++     +|++|++++|.++..   .+..+.+|       |.+++ +|.. |..+++|+
T Consensus       121 ~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~  175 (290)
T 1p9a_G          121 RGLG-----ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLD  175 (290)
T ss_dssp             TTCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCC
T ss_pred             cCCC-----CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCC
Confidence            7777     889999999988844   34444444       55554 5554 45565554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=5.5e-13  Score=94.23  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=93.2

Q ss_pred             CCCCCEEECcCCccc-cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCc
Q 039460           56 FQQLESLDLIGNNIV-GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDI  134 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  134 (182)
                      .+++++|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..++ 
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-
T ss_pred             CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-
Confidence            468999999999998 77887    588999999999999999855  7789999999999999999987888887788 


Q ss_pred             CCCCCCCcEEecCcccCc----ccccccccC-------CCCccCcCh----hcccccCCC
Q 039460          135 LDENGLPFLEQTANRLSL----ESIDCIQDL-------IYLGGNLPR----KTLQQTKIS  179 (182)
Q Consensus       135 l~~~~L~~l~l~~N~~~~----~~~~~l~~L-------~~l~g~ip~----~l~~l~~L~  179 (182)
                          +|+++++++|.+++    ..+..+++|       |.+++ +|.    .+..+++|+
T Consensus        89 ----~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           89 ----NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLT  143 (149)
T ss_dssp             ----TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCC
T ss_pred             ----CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcc
Confidence                99999999999996    345566665       55555 443    577777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.40  E-value=2e-12  Score=110.19  Aligned_cols=111  Identities=18%  Similarity=0.061  Sum_probs=93.6

Q ss_pred             ccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEE
Q 039460           40 WEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS  115 (182)
Q Consensus        40 w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  115 (182)
                      +..|.|...+    |..+.  ..+++|++++|.+++..|.    .|..+++|++|++++|.+.+..|..|..+++|++|+
T Consensus        14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   87 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV   87 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTT----TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChh----HhccCccceEEECCCCccceeChhhccCccccCeee
Confidence            4457787653    44443  4799999999999986665    699999999999999999988899999999999999


Q ss_pred             cccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460          116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL  161 (182)
Q Consensus       116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L  161 (182)
                      +++|.+++..|..++.++     +|++|++++|.++..   .+..+++|
T Consensus        88 Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           88 LTANPLIFMAETALSGPK-----ALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             CTTCCCSEECTTTTSSCT-----TCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             CCCCcccccChhhhcccc-----cccEeeccccCcccCCcchhccCCcc
Confidence            999999988899999888     999999999999963   45555555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.40  E-value=2.1e-12  Score=109.06  Aligned_cols=91  Identities=25%  Similarity=0.252  Sum_probs=48.5

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .|..+++|++|++++|.+++..|.    .|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..++.
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  122 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH  122 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTT
T ss_pred             HhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccc
Confidence            445555555555555555543332    3555555555555555555444445555555555555555555322223444


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++     +|++|++++|.++
T Consensus       123 l~-----~L~~L~L~~n~l~  137 (570)
T 2z63_A          123 LK-----TLKELNVAHNLIQ  137 (570)
T ss_dssp             CT-----TCCEEECCSSCCC
T ss_pred             cc-----cccEEecCCCccc
Confidence            44     5666666666555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=115.07  Aligned_cols=117  Identities=18%  Similarity=0.030  Sum_probs=98.8

Q ss_pred             CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCccc-chhccCCCCCCEEEcccccccccccccccccC
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSI-FSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFD  133 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~  133 (182)
                      -.+++++|+|++|.+++..|.    .|..+++|++|+|++|...+.+ |..|..+++|++|+|++|.+++..|..+..++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~----~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~   97 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTAS----SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF   97 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSS----SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred             CCCCcCEEECCCCcCCccChh----HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence            347899999999999987676    6999999999999999777777 67899999999999999999988899999998


Q ss_pred             cCCCCCCCcEEecCcccCccc-----ccccccC-------CCCccCcC-hhcccccCCCC
Q 039460          134 ILDENGLPFLEQTANRLSLES-----IDCIQDL-------IYLGGNLP-RKTLQQTKISE  180 (182)
Q Consensus       134 ~l~~~~L~~l~l~~N~~~~~~-----~~~l~~L-------~~l~g~ip-~~l~~l~~L~~  180 (182)
                           +|++|++++|.+++..     +..+++|       |.+.+..| +.|+++++|++
T Consensus        98 -----~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           98 -----HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             -----SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             -----ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence                 9999999999998642     5566666       56666444 56888888763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.39  E-value=3.5e-12  Score=101.26  Aligned_cols=102  Identities=23%  Similarity=0.203  Sum_probs=77.0

Q ss_pred             CccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCC
Q 039460           37 CCQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR  112 (182)
Q Consensus        37 ~c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~  112 (182)
                      .|.|..+.|...+    |..+  .+.+++|++++|.+++..+.    .+..+++|++|++++|.+.+..|..|..+++|+
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            4689999998643    3323  25788899999998875443    588889999999999998877788888889999


Q ss_pred             EEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460          113 CLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       113 ~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      +|++++|.++ .+|..+.  +     +|++|++++|.++.
T Consensus       104 ~L~Ls~n~l~-~l~~~~~--~-----~L~~L~l~~n~l~~  135 (330)
T 1xku_A          104 RLYLSKNQLK-ELPEKMP--K-----TLQELRVHENEITK  135 (330)
T ss_dssp             EEECCSSCCS-BCCSSCC--T-----TCCEEECCSSCCCB
T ss_pred             EEECCCCcCC-ccChhhc--c-----cccEEECCCCcccc
Confidence            9999998887 6776553  3     56666666666663

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.39  E-value=1.8e-12  Score=108.77  Aligned_cols=114  Identities=19%  Similarity=0.128  Sum_probs=93.1

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-cccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKV  129 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~  129 (182)
                      ..|..+++|++|++++|.+++..|.    .|..+++|++|++++|.++ .+|..  .+++|++|++++|.+++ .+|..+
T Consensus        39 ~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~  111 (520)
T 2z7x_B           39 SDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEF  111 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred             hhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhh
Confidence            4677889999999999999987676    6899999999999999998 68876  78999999999999987 578889


Q ss_pred             cccCcCCCCCCCcEEecCcccCcccccccccC---------CCC--ccCcChhccccc
Q 039460          130 FWFDILDENGLPFLEQTANRLSLESIDCIQDL---------IYL--GGNLPRKTLQQT  176 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L---------~~l--~g~ip~~l~~l~  176 (182)
                      +.++     +|++|++++|.+++..+..+.+|         +.+  .+.+|..+..++
T Consensus       112 ~~l~-----~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B          112 GNMS-----QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             GGCT-----TCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             ccCC-----cceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccc
Confidence            8888     89999999999987766666555         344  566676666643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=2.7e-13  Score=120.84  Aligned_cols=119  Identities=13%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             CCCcc--CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCc-CCc-ccchhccCCC-------CCCEEEccc
Q 039460           50 CSLFT--PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS-FNN-SIFSSLGGLS-------SLRCLSLRS  118 (182)
Q Consensus        50 ~~~~~--~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~-l~g-~~p~~~~~l~-------~L~~L~L~~  118 (182)
                      |..++  .+++|++|+|++|.+.|.+|.    .+..+++|++|+|++|+ ++| .+|..++.++       +|++|+|++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            45555  899999999999999999997    68999999999999998 888 8888766555       999999999


Q ss_pred             ccccccccc--cccccCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccC-CC
Q 039460          119 NRLNGSVVI--KVFWFDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTK-IS  179 (182)
Q Consensus       119 N~l~g~~p~--~~~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~-L~  179 (182)
                      |.++ .+|.  .++.++     +|++|++++|.++.- .+..+++|       |.+. .+|.+++.+++ |+
T Consensus       558 N~L~-~ip~~~~l~~L~-----~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          558 NNLE-EFPASASLQKMV-----KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE  622 (876)
T ss_dssp             SCCC-BCCCHHHHTTCT-----TCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred             CcCC-ccCChhhhhcCC-----CCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence            9998 8888  888888     888888888888711 33344444       5556 68877777766 54

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.38  E-value=1.9e-12  Score=95.85  Aligned_cols=102  Identities=18%  Similarity=0.271  Sum_probs=86.9

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      ++.+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+| .+
T Consensus        81 ~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l  155 (197)
T 4ezg_A           81 YNPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL  155 (197)
T ss_dssp             CGGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG
T ss_pred             chhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hh
Confidence            55788899999999999999987776    69999999999999999998889999999999999999998444676 57


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc-cccccccC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE-SIDCIQDL  161 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L  161 (182)
                      ..++     +|++|++++|.++.. .+..+++|
T Consensus       156 ~~l~-----~L~~L~l~~n~i~~~~~l~~l~~L  183 (197)
T 4ezg_A          156 KTLP-----ELKSLNIQFDGVHDYRGIEDFPKL  183 (197)
T ss_dssp             GGCS-----SCCEEECTTBCCCCCTTGGGCSSC
T ss_pred             cCCC-----CCCEEECCCCCCcChHHhccCCCC
Confidence            7777     899999999999854 44444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.38  E-value=5.6e-12  Score=100.19  Aligned_cols=100  Identities=21%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|..+.|....    |..+  .+++++|++++|.+++..|.    .+..+++|++|++++|.+++..|..|+.+++|++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            789999997643    3333  35788888888888765454    5788888888888888888666778888888888


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      |++++|.++ .+|..+.  +     +|++|++++|.++
T Consensus       107 L~L~~n~l~-~l~~~~~--~-----~L~~L~l~~n~i~  136 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNLP--S-----SLVELRIHDNRIR  136 (332)
T ss_dssp             EECCSSCCC-SCCSSCC--T-----TCCEEECCSSCCC
T ss_pred             EECCCCcCC-ccCcccc--c-----cCCEEECCCCccC
Confidence            888888887 6666553  3     5666666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=4.2e-13  Score=117.56  Aligned_cols=115  Identities=22%  Similarity=0.249  Sum_probs=95.1

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..+..+++|++|+|++|.|+ .+|.    .|..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+
T Consensus       240 ~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~  312 (727)
T 4b8c_D          240 SANIFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF  312 (727)
T ss_dssp             CGGGGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred             ChhhcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence            456668999999999999999 7887    6899999999999999999 88999999999999999999997 889999


Q ss_pred             cccCcCCCCCCCcEEecCcccCccccccccc---------C--CCCccCcChhccccc
Q 039460          130 FWFDILDENGLPFLEQTANRLSLESIDCIQD---------L--IYLGGNLPRKTLQQT  176 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~---------L--~~l~g~ip~~l~~l~  176 (182)
                      +.++     +|++|++++|.+++.....+..         |  |.++|.+|.++..+.
T Consensus       313 ~~l~-----~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~  365 (727)
T 4b8c_D          313 GNLC-----NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE  365 (727)
T ss_dssp             TSCT-----TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred             hcCC-----CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence            8888     9999999999999763333221         1  788999998776554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=2.8e-12  Score=94.95  Aligned_cols=94  Identities=26%  Similarity=0.259  Sum_probs=82.3

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      |..|..+++|++|++++|.+++..+.    .|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..+
T Consensus        47 p~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  122 (193)
T 2wfh_A           47 PKELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF  122 (193)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             HHHhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence            56788999999999999999975554    69999999999999999997777789999999999999999995444457


Q ss_pred             cccCcCCCCCCCcEEecCcccCc
Q 039460          130 FWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      ..++     +|+++++++|.+..
T Consensus       123 ~~l~-----~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          123 NDLS-----ALSHLAIGANPLYC  140 (193)
T ss_dssp             TTCT-----TCCEEECCSSCEEC
T ss_pred             hcCc-----cccEEEeCCCCeec
Confidence            7777     89999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.37  E-value=1.3e-12  Score=105.90  Aligned_cols=99  Identities=20%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-ccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VFW  131 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~  131 (182)
                      +..+++|++|++++|.+++..+.    .+..+++|++|++++|.+.+..|..|+.+++|++|++++|.++ .+|.. +..
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~  139 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN  139 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             hcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcC
Confidence            45677888888888888764443    5788888888888888888666677888888888888888887 55554 466


Q ss_pred             cCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460          132 FDILDENGLPFLEQTANRLSLE---SIDCIQDL  161 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L  161 (182)
                      ++     +|++|++++|.++..   .+..+++|
T Consensus       140 l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A          140 TP-----KLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             CT-----TCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             CC-----CCcEEECCCCccCccChhhccCCCCC
Confidence            66     788888888887744   24444554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=106.76  Aligned_cols=121  Identities=17%  Similarity=0.111  Sum_probs=92.3

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|++++|.+++ +|..   .|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~-~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  148 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKL-IPLG---VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF  148 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCS-CCTT---SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred             hhhhhCCccCCEEECCCCcCCc-cCcc---cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence            6678889999999999999986 5542   57889999999999999998788889999999999999999988778788


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ..++     +|+.|++++|.++..   .+..+++|       +.+.+..+..|..+++|+
T Consensus       149 ~~l~-----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  203 (477)
T 2id5_A          149 SGLN-----SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK  203 (477)
T ss_dssp             TTCT-----TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred             cCCC-----CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence            8777     888888888888744   23444444       344443333455555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.36  E-value=3.8e-12  Score=107.98  Aligned_cols=91  Identities=23%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc--ccchhccCCCCCCEEEccccccccccccc-cc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN--SIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VF  130 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~  130 (182)
                      ..+++|++|++++|.+++.+|.    .+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT----TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             cCCCCceEEECCCCccccchhh----hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence            4567777777777777776665    46777777777777777764  33456677777777777777777655553 33


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc
Q 039460          131 WFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      .++     +|+++++++|.+++.
T Consensus       426 ~l~-----~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          426 WAE-----SILVLNLSSNMLTGS  443 (562)
T ss_dssp             CCT-----TCCEEECCSSCCCGG
T ss_pred             Ccc-----cCCEEECCCCCCCcc
Confidence            344     455555555555433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=5.5e-12  Score=104.02  Aligned_cols=101  Identities=22%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             ccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEE
Q 039460           40 WEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS  115 (182)
Q Consensus        40 w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  115 (182)
                      |..|.|....    |..+.  +.+++|+|++|.+++..+.    .|..+++|++|+|++|.+.+..+..|..+++|++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence            6688997653    32222  4566777777777654443    466677777777777776655555666677777777


Q ss_pred             cccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      |++|++++..+..+..++     +|++|++++|.++
T Consensus       119 L~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~i~  149 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLS-----KLKELWLRNNPIE  149 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCS-----SCCEEECCSCCCC
T ss_pred             CCCCcCCeeCHhHhhccc-----cCceeeCCCCccc
Confidence            777776643334455555     6666666666655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.36  E-value=1.3e-12  Score=110.00  Aligned_cols=131  Identities=22%  Similarity=0.156  Sum_probs=103.9

Q ss_pred             CccccceEEcCCC------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCC
Q 039460           37 CCQWEAVEKATYE------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS  110 (182)
Q Consensus        37 ~c~w~gv~c~~~~------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~  110 (182)
                      .|.|.|| |+...      |..+.  ++|++|++++|.+++..|.    .+..+++|++|++++|++.+..|..|..+++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   75 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGS   75 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSS----TTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCce-EECCCCccccccccCC--CCccEEECcCCccCccChh----hhhcCCcccEEECCCCCcCccChhhcccccc
Confidence            6999999 86432      44332  6899999999999987666    6999999999999999999877889999999


Q ss_pred             CCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcCh-hcccccCC
Q 039460          111 LRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPR-KTLQQTKI  178 (182)
Q Consensus       111 L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~-~l~~l~~L  178 (182)
                      |++|++++|.+++..|..++.++     +|++|++++|.++..    .+..+++|       +.+.+.+|. .++.+++|
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLS-----SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCT-----TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CCEEECCCCccCccCHHHhccCC-----CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence            99999999999977777788888     999999999999842    35555555       333444653 46666655


Q ss_pred             C
Q 039460          179 S  179 (182)
Q Consensus       179 ~  179 (182)
                      +
T Consensus       151 ~  151 (549)
T 2z81_A          151 N  151 (549)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.36  E-value=6.2e-12  Score=101.99  Aligned_cols=94  Identities=20%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchh-ccCCCCCCEEEccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSS-LGGLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      +..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+. .+|.. |..+++|++|++++|.+++..|..
T Consensus        86 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~  160 (390)
T 3o6n_A           86 TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT  160 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             hhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhh
Confidence            34778888999999999998875554    5788888889999888888 55554 578888888888888888666666


Q ss_pred             ccccCcCCCCCCCcEEecCcccCcc
Q 039460          129 VFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +..++     +|++|++++|.++..
T Consensus       161 ~~~l~-----~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          161 FQATT-----SLQNLQLSSNRLTHV  180 (390)
T ss_dssp             TSSCT-----TCCEEECCSSCCSBC
T ss_pred             ccCCC-----CCCEEECCCCcCCcc
Confidence            76666     666666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.36  E-value=2.7e-12  Score=103.45  Aligned_cols=95  Identities=20%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             CCCcc-CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc
Q 039460           50 CSLFT-PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~-~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      +..+. .+++|++|+|++|.+++..+.    .|..+++|++|+|++|++.+..+..|..+++|++|+|++|++++..|..
T Consensus        56 ~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~  131 (361)
T 2xot_A           56 AEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA  131 (361)
T ss_dssp             TTSSSSCCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             hhhhhhcccccCEEECCCCcCCccChh----hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH
Confidence            34455 788999999999999875444    5888999999999999998665667888999999999999998777788


Q ss_pred             ccccCcCCCCCCCcEEecCcccCcc
Q 039460          129 VFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +..++     +|+.|++++|.++..
T Consensus       132 ~~~l~-----~L~~L~L~~N~l~~l  151 (361)
T 2xot_A          132 FEDMA-----QLQKLYLSQNQISRF  151 (361)
T ss_dssp             TTTCT-----TCCEEECCSSCCCSC
T ss_pred             hCCcc-----cCCEEECCCCcCCee
Confidence            88877     889999999988843

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.35  E-value=3.6e-12  Score=108.15  Aligned_cols=95  Identities=21%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVF  130 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~  130 (182)
                      .|..+++|++|++++|.+++..|.    .|..+++|++|++++|.++ .+|..  .+++|++|++++|++++ .+|..++
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~  143 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG  143 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG
T ss_pred             hhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhc
Confidence            344444455555555554443333    3444555555555555544 34443  44555555555555543 2334455


Q ss_pred             ccCcCCCCCCCcEEecCcccCccccccc
Q 039460          131 WFDILDENGLPFLEQTANRLSLESIDCI  158 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~~~~~l  158 (182)
                      .++     +|++|++++|.++...+..+
T Consensus       144 ~l~-----~L~~L~L~~n~l~~~~~~~l  166 (562)
T 3a79_B          144 NLT-----KLTFLGLSAAKFRQLDLLPV  166 (562)
T ss_dssp             GCT-----TCCEEEEECSBCCTTTTGGG
T ss_pred             ccC-----cccEEecCCCccccCchhhh
Confidence            554     55666666665554433333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.35  E-value=4.3e-12  Score=107.14  Aligned_cols=119  Identities=22%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc-ccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN-GSVVIKVFW  131 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~-g~~p~~~~~  131 (182)
                      +..+++|++|++++|.+.+..|..   .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             ccccCCCCEEEccCCccccccchh---hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence            556677777777777776654432   4667777777777777777667777777777777777777776 567777776


Q ss_pred             cCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          132 FDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ++     +|++|++++|.+++.   .+..+++|       |.+++..|..+..+++|+
T Consensus       469 l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          469 LR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             CT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cc-----CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            66     777777777777744   33344444       455654444566666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=9.3e-12  Score=90.39  Aligned_cols=95  Identities=21%  Similarity=0.211  Sum_probs=80.1

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus        45 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  120 (177)
T 2o6r_A           45 HGVFDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF  120 (177)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             HHHhcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh
Confidence            44678899999999999999864433    57899999999999999996666678999999999999999985444445


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ..++     +|+++++++|.+++.
T Consensus       121 ~~l~-----~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          121 DRLT-----SLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTCT-----TCCEEECCSSCBCCC
T ss_pred             cCCc-----ccCEEEecCCCeecc
Confidence            6677     899999999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=7.7e-12  Score=103.15  Aligned_cols=78  Identities=26%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|+|++|.+++..+.    .|..+++|++|+|++|.++...+..|..+++|++|+|++|.+++..+..+
T Consensus        81 ~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  156 (440)
T 3zyj_A           81 VNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF  156 (440)
T ss_dssp             TTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT
T ss_pred             HHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh
Confidence            45677888888888888888764444    57788888888888888874444567778888888888887774333333


Q ss_pred             cc
Q 039460          130 FW  131 (182)
Q Consensus       130 ~~  131 (182)
                      ..
T Consensus       157 ~~  158 (440)
T 3zyj_A          157 NR  158 (440)
T ss_dssp             TT
T ss_pred             hh
Confidence            33

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=4.6e-12  Score=96.21  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCc-CCcccchhccCCCCCCEEEccc-ccccccccccccccCcC
Q 039460           58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS-FNNSIFSSLGGLSSLRCLSLRS-NRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~l  135 (182)
                      .+++|++++|.+++..+.    .|..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..+..++  
T Consensus        32 ~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~--  105 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP--  105 (239)
T ss_dssp             TCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT--
T ss_pred             cccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC--
Confidence            677777777777653332    46667777777777775 5533334666677777777776 666644444555555  


Q ss_pred             CCCCCCcEEecCcccC
Q 039460          136 DENGLPFLEQTANRLS  151 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~  151 (182)
                         +|++|++++|.++
T Consensus       106 ---~L~~L~l~~n~l~  118 (239)
T 2xwt_C          106 ---LLKFLGIFNTGLK  118 (239)
T ss_dssp             ---TCCEEEEEEECCC
T ss_pred             ---CCCEEeCCCCCCc
Confidence               6666666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.33  E-value=2.3e-12  Score=92.84  Aligned_cols=112  Identities=22%  Similarity=0.214  Sum_probs=91.1

Q ss_pred             CCCCCEEECcCCccc-cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCc
Q 039460           56 FQQLESLDLIGNNIV-GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDI  134 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  134 (182)
                      .++|++|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++ 
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-   95 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-   95 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-
T ss_pred             cccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-
Confidence            478999999999998 77887    578899999999999999854  7788999999999999999977888777788 


Q ss_pred             CCCCCCCcEEecCcccCc----ccccccccC-------CCCccCcCh----hcccccCCC
Q 039460          135 LDENGLPFLEQTANRLSL----ESIDCIQDL-------IYLGGNLPR----KTLQQTKIS  179 (182)
Q Consensus       135 l~~~~L~~l~l~~N~~~~----~~~~~l~~L-------~~l~g~ip~----~l~~l~~L~  179 (182)
                          +|++|++++|.+++    ..+..+++|       |.+++ +|.    .+..+++|+
T Consensus        96 ----~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           96 ----NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLT  150 (168)
T ss_dssp             ----TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCC
T ss_pred             ----CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCc
Confidence                89999999999986    245555555       44554 554    577777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.32  E-value=1.6e-12  Score=102.72  Aligned_cols=38  Identities=21%  Similarity=0.129  Sum_probs=16.5

Q ss_pred             CCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      ++|++|++++|.+.+..|..|+.+++|++|++++|++.
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            34444444444444333344444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=5e-12  Score=107.95  Aligned_cols=89  Identities=26%  Similarity=0.310  Sum_probs=67.2

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccc-cccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSV-VIKVFW  131 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~-p~~~~~  131 (182)
                      +..+++|++|+|++|.++ .+|.    .+..+++|++|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++.
T Consensus       459 ~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             ccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence            667777888888888877 5676    57777888888888888774 66 6777788888888888887655 777777


Q ss_pred             cCcCCCCCCCcEEecCcccCcc
Q 039460          132 FDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ++     +|++|++++|.+++.
T Consensus       532 l~-----~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          532 CP-----RLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CT-----TCCEEECTTSGGGGS
T ss_pred             CC-----CCCEEEecCCcCCCC
Confidence            77     777888887777643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=8.6e-12  Score=104.51  Aligned_cols=112  Identities=18%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhcc-CCCCCCEEEcccccccccccccccccCc
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG-GLSSLRCLSLRSNRLNGSVVIKVFWFDI  134 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~-~l~~L~~L~L~~N~l~g~~p~~~~~l~~  134 (182)
                      +++|++|++++|.+++..|.    .+..+++|++|++++|.+++.+|..+. .+++|++|+|++|.+++. |.. ..++ 
T Consensus       119 l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~-~~l~-  191 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFA-  191 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCT-
T ss_pred             cCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-ccc-ccCC-
Confidence            45566666666666665444    355666666666666666665555554 566666666666666643 222 1233 


Q ss_pred             CCCCCCCcEEecCcccCcc--cccccccC-------CCCccCcChhcccccCCC
Q 039460          135 LDENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       135 l~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                          +|++|++++|.+++.  .+..+++|       |.+++ +|..++.+++|.
T Consensus       192 ----~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~  240 (487)
T 3oja_A          192 ----KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE  240 (487)
T ss_dssp             ----TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred             ----CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence                666666666666633  23333333       44554 566555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.29  E-value=1.4e-12  Score=103.00  Aligned_cols=88  Identities=22%  Similarity=0.179  Sum_probs=76.1

Q ss_pred             CCCCCCEEECcCCccccccCccccccc--CCCCCCcEEEccCCcCCcccchhccCC-----CCCCEEEcccccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRL--SRLSNLKFLRLDFNSFNNSIFSSLGGL-----SSLRCLSLRSNRLNGSVVI  127 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~--~~l~~L~~L~L~~n~l~g~~p~~~~~l-----~~L~~L~L~~N~l~g~~p~  127 (182)
                      .+++|++|++++|.+++.+|.    .+  ..+++|++|++++|.+++. |..++.+     ++|++|++++|++++..|.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPP----PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCC----CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             CcCCccEEEccCCcccchhHH----HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            588999999999999998887    45  8899999999999999976 8877776     9999999999999987778


Q ss_pred             cccccCcCCCCCCCcEEecCcccCc
Q 039460          128 KVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       128 ~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      .++.++     +|++|++++|++.+
T Consensus       168 ~~~~l~-----~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          168 QVRVFP-----ALSTLDLSDNPELG  187 (312)
T ss_dssp             TCCCCS-----SCCEEECCSCTTCH
T ss_pred             HhccCC-----CCCEEECCCCCcCc
Confidence            888887     77777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.29  E-value=1.4e-11  Score=101.92  Aligned_cols=102  Identities=23%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             ccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEE
Q 039460           40 WEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS  115 (182)
Q Consensus        40 w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  115 (182)
                      |..|.|...+    |..+.  +++++|+|++|.+++..|.    .|..+++|++|+|++|.+.+..|..|..+++|++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence            6789998654    33332  6899999999999986666    699999999999999999987778999999999999


Q ss_pred             cccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460          116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      |++|++++..+..+..++     +|++|++++|.++.
T Consensus       130 L~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~  161 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLS-----KLRELWLRNNPIES  161 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCT-----TCCEEECCSCCCCE
T ss_pred             CCCCcCCccChhhhcccC-----CCCEEECCCCCcce
Confidence            999999965556677777     89999999998883

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.29  E-value=8.1e-12  Score=107.90  Aligned_cols=120  Identities=18%  Similarity=0.133  Sum_probs=95.4

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..+..+++|++|++++|.+++ +|..   .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..+
T Consensus        66 ~~~~~~l~~L~~L~L~~n~l~~-l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  141 (680)
T 1ziw_A           66 PELCQKLPMLKVLNLQHNELSQ-LSDK---TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ  141 (680)
T ss_dssp             TTHHHHCTTCCEEECCSSCCCC-CCTT---TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred             HHHHhcccCcCEEECCCCccCc-cChh---hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence            5567889999999999999986 5542   58999999999999999986666789999999999999999998888888


Q ss_pred             cccCcCCCCCCCcEEecCcccCccccc-----ccccC-------CCCccCcChhcccccCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLESID-----CIQDL-------IYLGGNLPRKTLQQTKI  178 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~~~~-----~l~~L-------~~l~g~ip~~l~~l~~L  178 (182)
                      +.++     +|++|++++|.+++....     .+.+|       +.+.+..|..+..+.+|
T Consensus       142 ~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  197 (680)
T 1ziw_A          142 VQLE-----NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL  197 (680)
T ss_dssp             SCCT-----TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred             cccc-----cCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence            8888     899999999998854221     11233       56666556656655544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=9.4e-12  Score=106.24  Aligned_cols=96  Identities=23%  Similarity=0.228  Sum_probs=82.9

Q ss_pred             CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460           58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE  137 (182)
Q Consensus        58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~  137 (182)
                      .|++|++++|.+++ +|.     +..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+++ +| .++.++    
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~----  508 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP----  508 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS----
T ss_pred             CceEEEecCCCCCC-CcC-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC----
Confidence            58899999999997 674     889999999999999999 899999999999999999999996 77 788888    


Q ss_pred             CCCCcEEecCcccCcc----cccccccC-------CCCccC
Q 039460          138 NGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGN  167 (182)
Q Consensus       138 ~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~  167 (182)
                       +|++|++++|.+++.    .+..+++|       |.+++.
T Consensus       509 -~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          509 -RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             -SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             -CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence             999999999999865    34555555       556663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.27  E-value=1.7e-11  Score=104.95  Aligned_cols=102  Identities=20%  Similarity=0.125  Sum_probs=63.5

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..|..+++|++|+|++|.+++..|.    .|..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..+.
T Consensus        93 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  168 (597)
T 3oja_B           93 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  168 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             HHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence            3566666677777777776664443    456666777777777766633333456666777777777776665555666


Q ss_pred             ccCcCCCCCCCcEEecCcccCcccccccccC
Q 039460          131 WFDILDENGLPFLEQTANRLSLESIDCIQDL  161 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L  161 (182)
                      .++     +|++|++++|.+++..+..+++|
T Consensus       169 ~l~-----~L~~L~L~~N~l~~~~~~~l~~L  194 (597)
T 3oja_B          169 ATT-----SLQNLQLSSNRLTHVDLSLIPSL  194 (597)
T ss_dssp             TCT-----TCCEEECTTSCCSBCCGGGCTTC
T ss_pred             cCC-----cCcEEECcCCCCCCcChhhhhhh
Confidence            665     66677777776665555544444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.26  E-value=1.1e-11  Score=99.21  Aligned_cols=133  Identities=24%  Similarity=0.186  Sum_probs=101.1

Q ss_pred             CCCccccceEEcCCC------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCC
Q 039460           35 SNCCQWEAVEKATYE------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGL  108 (182)
Q Consensus        35 ~~~c~w~gv~c~~~~------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l  108 (182)
                      ...|.|.|+ |+...      |..+.  ++|++|++++|.+++..+.    .+..+++|++|++++|.+++..|..|..+
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCCCCeE-eeCCCCCccccccccc--ccCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCccCccCHhhcCCC
Confidence            568999998 65332      33333  5899999999999974443    68999999999999999997777889999


Q ss_pred             CCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc----cccccccC-------C-CCccCcChhccccc
Q 039460          109 SSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------I-YLGGNLPRKTLQQT  176 (182)
Q Consensus       109 ~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~-~l~g~ip~~l~~l~  176 (182)
                      ++|++|++++|++++..+..+..++     +|++|++++|.++..    .+..+++|       | .+....|..++.++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  174 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLS-----SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT  174 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCT-----TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCc-----cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence            9999999999999854344477787     999999999998843    35555665       3 24443345577776


Q ss_pred             CCC
Q 039460          177 KIS  179 (182)
Q Consensus       177 ~L~  179 (182)
                      +|+
T Consensus       175 ~L~  177 (353)
T 2z80_A          175 FLE  177 (353)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=1.1e-11  Score=89.97  Aligned_cols=87  Identities=21%  Similarity=0.164  Sum_probs=68.2

Q ss_pred             ccCCC-CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccc--cc
Q 039460           53 FTPFQ-QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI--KV  129 (182)
Q Consensus        53 ~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~  129 (182)
                      +..+. +|++|++++|.+++. +     .+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+
T Consensus        37 ~~~~~~~L~~L~Ls~N~l~~~-~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l  109 (176)
T 1a9n_A           37 LGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPL  109 (176)
T ss_dssp             GGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGG
T ss_pred             hhhcCCCCCEEECCCCCCCcc-c-----ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhh
Confidence            44444 899999999998864 3     4888899999999999988433344578889999999999885 6676  66


Q ss_pred             cccCcCCCCCCCcEEecCcccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..++     +|+++++++|.++
T Consensus       110 ~~l~-----~L~~L~l~~N~i~  126 (176)
T 1a9n_A          110 ASLK-----SLTYLCILRNPVT  126 (176)
T ss_dssp             GGCT-----TCCEEECCSSGGG
T ss_pred             hcCC-----CCCEEEecCCCCC
Confidence            6776     8889999999887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.25  E-value=1.2e-11  Score=97.54  Aligned_cols=96  Identities=19%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             CCccCCCCCCEEECcCCccccc--cCcccccccCCCCCCcEEEccCCcCCcccch----hccCCCCCCEEEccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGC--VENEGLGRLSRLSNLKFLRLDFNSFNNSIFS----SLGGLSSLRCLSLRSNRLNGS  124 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~--~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~----~~~~l~~L~~L~L~~N~l~g~  124 (182)
                      ..+..+++|++|++++|.+.+.  ++..  ..+..+++|++|++++|.++ .++.    .+..+++|++|+|++|.+++.
T Consensus       163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          163 EQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             TSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             HHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            4555666677777777766542  2110  02345666777777777665 3333    245667777777777777766


Q ss_pred             ccccccccCcCCCCCCCcEEecCcccC
Q 039460          125 VVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       125 ~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +|+.++.+..  ..+|++|++++|.++
T Consensus       240 ~p~~~~~~~~--~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          240 VNPSAPRCMW--SSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCSCCSSCCC--CTTCCCEECCSSCCC
T ss_pred             chhhHHhccC--cCcCCEEECCCCCCC
Confidence            6766655521  127778888888777

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.25  E-value=7e-12  Score=98.88  Aligned_cols=70  Identities=17%  Similarity=-0.002  Sum_probs=40.2

Q ss_pred             cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG  123 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g  123 (182)
                      ..+++|++|++++|.+++..+......+..+++|++|++++|.+.+..|..|+.+++|++|+|++|++.+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc
Confidence            5556666666666666554331000023456666666666666665555666666667777776666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=5.5e-11  Score=86.14  Aligned_cols=92  Identities=20%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460           58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE  137 (182)
Q Consensus        58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~  137 (182)
                      ..+++++++|.++. +|.    .+  .++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+..++    
T Consensus        10 ~~~~l~~s~n~l~~-ip~----~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~----   78 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPT----GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT----   78 (170)
T ss_dssp             ETTEEECTTSCCSS-CCS----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT----
T ss_pred             CCCEEEeCCCCcCc-cCc----cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC----
Confidence            35789999999985 776    34  38899999999999987788999999999999999999965555567787    


Q ss_pred             CCCCcEEecCcccCcc---cccccccC
Q 039460          138 NGLPFLEQTANRLSLE---SIDCIQDL  161 (182)
Q Consensus       138 ~~L~~l~l~~N~~~~~---~~~~l~~L  161 (182)
                       +|++|++++|+++..   .+..+.+|
T Consensus        79 -~L~~L~L~~N~l~~~~~~~~~~l~~L  104 (170)
T 3g39_A           79 -QLTQLSLNDNQLKSIPRGAFDNLKSL  104 (170)
T ss_dssp             -TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             -CCCEEECCCCccCEeCHHHhcCCCCC
Confidence             999999999999854   35555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.23  E-value=1e-10  Score=92.90  Aligned_cols=89  Identities=27%  Similarity=0.235  Sum_probs=58.6

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+++..+..+
T Consensus        71 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~  143 (332)
T 2ft3_A           71 KDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVF  143 (332)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGG----GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGG
T ss_pred             HhHhhCCCCCcEEECCCCccCccCHh----HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHh
Confidence            45678888888888888888876565    5788888888888888876 5665443  566666666666653333334


Q ss_pred             cccCcCCCCCCCcEEecCccc
Q 039460          130 FWFDILDENGLPFLEQTANRL  150 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~  150 (182)
                      ..++     +|++|++++|.+
T Consensus       144 ~~l~-----~L~~L~l~~n~l  159 (332)
T 2ft3_A          144 SGLR-----NMNCIEMGGNPL  159 (332)
T ss_dssp             SSCS-----SCCEEECCSCCC
T ss_pred             CCCc-----cCCEEECCCCcc
Confidence            4444     444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.22  E-value=9e-11  Score=93.05  Aligned_cols=48  Identities=25%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS  103 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~  103 (182)
                      ..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.++ .+|.
T Consensus        70 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~-~l~~  117 (330)
T 1xku_A           70 GDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQLK-ELPE  117 (330)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCS-BCCS
T ss_pred             hhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCCCEEECCCCcCC-ccCh
Confidence            3567777777777777777765555    4677777777777777665 4443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.22  E-value=1e-10  Score=91.63  Aligned_cols=85  Identities=26%  Similarity=0.307  Sum_probs=43.7

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|++|++++|.+++ +|     .+..+++|++|++++|.+.+ + +.+..+++|++|++++|++++.  ..+..+
T Consensus        86 l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l  155 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRL  155 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             cccCCCCCEEECCCCcCCC-Ch-----hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccC
Confidence            4444555555555555543 22     24555555555555555542 2 2344555555555555555532  334444


Q ss_pred             CcCCCCCCCcEEecCcccCc
Q 039460          133 DILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~  152 (182)
                      +     +|++|++++|.+++
T Consensus       156 ~-----~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          156 T-----KLDTLSLEDNQISD  170 (291)
T ss_dssp             T-----TCSEEECCSSCCCC
T ss_pred             C-----CCCEEEccCCcccc
Confidence            4     56666666666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.22  E-value=1.5e-11  Score=102.97  Aligned_cols=115  Identities=19%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC-
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL-  135 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l-  135 (182)
                      ++|++|+|++|.+++..|.    .|..+++|++|+|++|.+++..|  +..+++|++|+|++|.+++. |.. ..+..| 
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~~~-~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-LVG-PSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGG----GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-EEC-TTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHH----HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-CCC-CCcCEEE
Confidence            3677777777777764444    56777777777777777765444  66777777777777776632 211 000000 


Q ss_pred             ------------CCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcc-cccCCC
Q 039460          136 ------------DENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTL-QQTKIS  179 (182)
Q Consensus       136 ------------~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~-~l~~L~  179 (182)
                                  ...+|+.|++++|.+++.   .+..+++|       |.+++.+|..+. .+++|+
T Consensus       106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A          106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence                        112567777777777744   33444444       566666666654 555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.21  E-value=1.1e-10  Score=92.11  Aligned_cols=84  Identities=24%  Similarity=0.385  Sum_probs=45.7

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|++|++++|.+++ ++     .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l  150 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGL  150 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGC
T ss_pred             HccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCC
Confidence            5556666666666666654 33     25566666666666666653 332 55566666666666666532 22 3444


Q ss_pred             CcCCCCCCCcEEecCcccC
Q 039460          133 DILDENGLPFLEQTANRLS  151 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~  151 (182)
                      +     +|++|++++|.++
T Consensus       151 ~-----~L~~L~l~~n~l~  164 (308)
T 1h6u_A          151 T-----NLQYLSIGNAQVS  164 (308)
T ss_dssp             T-----TCCEEECCSSCCC
T ss_pred             C-----CccEEEccCCcCC
Confidence            4     4455555554444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.21  E-value=9e-11  Score=85.39  Aligned_cols=91  Identities=18%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCC
Q 039460           59 LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDEN  138 (182)
Q Consensus        59 L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~  138 (182)
                      -+.+++++|.++ .+|.    .+.  ++|++|+|++|.+.+..|..|..+++|++|+|++|++++..+..+..++     
T Consensus        14 ~~~l~~~~n~l~-~iP~----~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-----   81 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPA----GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-----   81 (174)
T ss_dssp             SSEEECCSSCCS-SCCS----CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred             CcEEEeCCCCCC-ccCC----CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc-----
Confidence            378999999996 5886    343  8999999999999987788999999999999999999964444457777     


Q ss_pred             CCCcEEecCcccCcc---cccccccC
Q 039460          139 GLPFLEQTANRLSLE---SIDCIQDL  161 (182)
Q Consensus       139 ~L~~l~l~~N~~~~~---~~~~l~~L  161 (182)
                      +|++|++++|.++..   .+..+++|
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hhhEEECCCCccceeCHHHhccccCC
Confidence            999999999999854   24555555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.20  E-value=3.9e-11  Score=87.09  Aligned_cols=113  Identities=19%  Similarity=0.171  Sum_probs=75.6

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCC-CCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-c
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLS-NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-V  129 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~  129 (182)
                      .+..+.+|++|++++|.++. +|.     +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++ +|+. +
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-----~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-----LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-----GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-----hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc-cCcchh
Confidence            34556788888888888874 553     44444 88888888888874 3 567788888888888888874 4543 3


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChh----cccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRK----TLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~----l~~l~~L~  179 (182)
                      ..++     +|++|++++|.++.-    .+..+++|       |.+. .+|..    +..+++|+
T Consensus        85 ~~l~-----~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A           85 QALP-----DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             HHCT-----TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred             hcCC-----CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence            6677     788888888888621    34444444       3333 35553    56665554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.20  E-value=3.7e-11  Score=95.08  Aligned_cols=91  Identities=20%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             cCCCCCCcEEEccCCcCCcccchhcc-CCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc--cccc
Q 039460           81 LSRLSNLKFLRLDFNSFNNSIFSSLG-GLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE--SIDC  157 (182)
Q Consensus        81 ~~~l~~L~~L~L~~n~l~g~~p~~~~-~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~--~~~~  157 (182)
                      +..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++ +|... .++     +|++|++++|.++..  .+..
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~-----~L~~L~Ls~N~l~~l~~~~~~  212 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFA-----KLKTLDLSSNKLAFMGPEFQS  212 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCT-----TCCEEECCSSCCCEECGGGGG
T ss_pred             hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccccc-ccc-----cCCEEECCCCcCCcchhhhcc
Confidence            33444444444444444433333332 34444444444444442 22211 122     556666666666522  2333


Q ss_pred             cccC-------CCCccCcChhcccccCCC
Q 039460          158 IQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       158 l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +++|       |.+.. +|..+..+++|+
T Consensus       213 l~~L~~L~L~~N~l~~-l~~~~~~l~~L~  240 (317)
T 3o53_A          213 AAGVTWISLRNNKLVL-IEKALRFSQNLE  240 (317)
T ss_dssp             GTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred             cCcccEEECcCCcccc-hhhHhhcCCCCC
Confidence            3333       44443 555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.19  E-value=1.4e-10  Score=90.83  Aligned_cols=95  Identities=25%  Similarity=0.327  Sum_probs=66.2

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.+++ ++.     +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~  132 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVH  132 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGG
T ss_pred             hHhcCCCCCEEEccCCccCC-Ccc-----cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcC
Confidence            46667788888888888875 332     6778888888888888764 44 37778888888888888774 3 34556


Q ss_pred             cCcCCCCCCCcEEecCcccCcc-cccccccC
Q 039460          132 FDILDENGLPFLEQTANRLSLE-SIDCIQDL  161 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L  161 (182)
                      ++     +|++|++++|.++.. .+..+++|
T Consensus       133 l~-----~L~~L~l~~n~l~~~~~l~~l~~L  158 (291)
T 1h6t_A          133 LP-----QLESLYLGNNKITDITVLSRLTKL  158 (291)
T ss_dssp             CT-----TCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             CC-----CCCEEEccCCcCCcchhhccCCCC
Confidence            66     778888888877743 34444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.17  E-value=1.8e-10  Score=90.95  Aligned_cols=113  Identities=26%  Similarity=0.388  Sum_probs=79.8

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      .+.+..+++|++|++++|.+++ ++.     +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +
T Consensus       100 ~~~~~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l  169 (308)
T 1h6u_A          100 VSAIAGLQSIKTLDLTSTQITD-VTP-----LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-L  169 (308)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-G
T ss_pred             chhhcCCCCCCEEECCCCCCCC-chh-----hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-h
Confidence            3457778899999999999886 443     7888899999999998874 443 7788888888888888874 444 6


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ..++     +|+.|++++|.+++. .+..+++|       |.+++ ++ .+..+++|+
T Consensus       170 ~~l~-----~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~  220 (308)
T 1h6u_A          170 ANLS-----KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD-VS-PLANTSNLF  220 (308)
T ss_dssp             TTCT-----TCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCC
T ss_pred             cCCC-----CCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc-cc-cccCCCCCC
Confidence            6666     788888888887744 24444444       44554 33 255555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.17  E-value=2.1e-10  Score=88.63  Aligned_cols=59  Identities=31%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             CCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460           85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus        85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      ++|++|++++|.+++ ++ .+..+++|++|++++|++++ +| .+..++     +|++|++++|.+++
T Consensus       106 ~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~-----~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          106 ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLS-----KLEVLDLHGNEITN  164 (263)
T ss_dssp             SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCT-----TCCEEECTTSCCCB
T ss_pred             CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCC-----CCCEEECCCCcCcc
Confidence            444444444444442 22 34455555555555555543 22 334444     55555555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.17  E-value=1.1e-10  Score=90.28  Aligned_cols=110  Identities=21%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.+++ +|.     +..+++|++|++++|++++ +|... . ++|++|++++|++++ ++ .+..
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~-~~~-----l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~  126 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISD-LSP-----LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIH  126 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTT
T ss_pred             HHhhCCCCCEEECCCCccCC-Chh-----hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcC
Confidence            57778899999999999886 443     7888999999999999874 55533 3 889999999999885 44 4666


Q ss_pred             cCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460          132 FDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ++     +|++|++++|++++. .+..+++|       |.+++.  ..+..+++|+
T Consensus       127 l~-----~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~  175 (263)
T 1xeu_A          127 LK-----NLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN  175 (263)
T ss_dssp             CT-----TCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred             cc-----cccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence            66     899999999998854 34455555       555553  4566666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.17  E-value=2.4e-11  Score=96.19  Aligned_cols=63  Identities=29%  Similarity=0.406  Sum_probs=42.0

Q ss_pred             CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG  123 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g  123 (182)
                      .+++|++|++++|.+++..|.    .+..+++|++|++++|.+.+..|  +..+++|++|++++|.+++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE
T ss_pred             cCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc
Confidence            345677777777777764443    46677777777777777764443  6677777777777777663

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.15  E-value=2.3e-10  Score=94.91  Aligned_cols=63  Identities=25%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460           81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus        81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      +..+++|++|++++|.+.+..|  +..+++|+.|++++|++++..|  +..++     +|+.|++++|.+++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT-----KLQRLFFYNNKVSD  345 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT-----TCCEEECCSSCCCC
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc-----cCCEeECCCCccCC
Confidence            3444445555555554443221  4445555555555555554333  33333     45555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.14  E-value=3.2e-10  Score=94.29  Aligned_cols=92  Identities=26%  Similarity=0.281  Sum_probs=60.7

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.+++ +|      +..+++|++|++++|.+++ +|  ++.+++|++|++++|++++ +|  ++.
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~-~~------~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~  125 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITT-LD------LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQ  125 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSC-CC------CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred             hhcccCCCCEEEccCCcCCe-Ec------cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence            46677777777777777776 32      5667777777777777764 33  6677777777777777764 44  555


Q ss_pred             cCcCCCCCCCcEEecCcccCcccccccccC
Q 039460          132 FDILDENGLPFLEQTANRLSLESIDCIQDL  161 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L  161 (182)
                      ++     +|++|++++|.+++..+..+++|
T Consensus       126 l~-----~L~~L~l~~N~l~~l~l~~l~~L  150 (457)
T 3bz5_A          126 NP-----LLTYLNCARNTLTEIDVSHNTQL  150 (457)
T ss_dssp             CT-----TCCEEECTTSCCSCCCCTTCTTC
T ss_pred             CC-----cCCEEECCCCccceeccccCCcC
Confidence            55     66677777776665444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.14  E-value=8.2e-11  Score=89.25  Aligned_cols=91  Identities=14%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CCCccCCCCCCEEECcCCc-cccccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEcccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNN-IVGCVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI  127 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~-l~g~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~  127 (182)
                      +..|..+++|++|++++|. ++. ++..   .|..+++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|.
T Consensus        48 ~~~~~~l~~L~~L~l~~n~~l~~-i~~~---~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~  122 (239)
T 2xwt_C           48 SHAFSNLPNISRIYVSIDVTLQQ-LESH---SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD  122 (239)
T ss_dssp             TTTTTTCTTCCEEEEECCSSCCE-ECTT---TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC
T ss_pred             HHHccCCCCCcEEeCCCCCCcce-eCHh---HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc
Confidence            3467788999999999997 765 4442   578889999999998 88885555678888999999999998875 665


Q ss_pred             cccccCcCCCCCCC---cEEecCc-ccC
Q 039460          128 KVFWFDILDENGLP---FLEQTAN-RLS  151 (182)
Q Consensus       128 ~~~~l~~l~~~~L~---~l~l~~N-~~~  151 (182)
                       +..+.     +|+   ++++++| .++
T Consensus       123 -~~~l~-----~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          123 -LTKVY-----STDIFFILEITDNPYMT  144 (239)
T ss_dssp             -CTTCC-----BCCSEEEEEEESCTTCC
T ss_pred             -ccccc-----ccccccEEECCCCcchh
Confidence             55555     333   5555555 444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.13  E-value=2.8e-10  Score=97.79  Aligned_cols=110  Identities=25%  Similarity=0.280  Sum_probs=64.8

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|+.|+|++|.+.+ +|     .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++.  ..+..+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l  152 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKD-LS-----SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRL  152 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CT-----TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSC
T ss_pred             hccCCCCCEEECcCCCCCC-Ch-----hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhccc
Confidence            5555666666666666654 33     26666666667776666663 3 3366666777777777766643  345555


Q ss_pred             CcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460          133 DILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +     +|+.|++++|.+++. .+..+.+|       |.+++ + +.+..+++|+
T Consensus       153 ~-----~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~  200 (605)
T 1m9s_A          153 T-----KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-L-RALAGLKNLD  200 (605)
T ss_dssp             T-----TCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-C-GGGTTCTTCS
T ss_pred             C-----CCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-C-hHHccCCCCC
Confidence            5     777777777777744 24444444       44444 3 3466665554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.13  E-value=1.5e-10  Score=96.24  Aligned_cols=108  Identities=21%  Similarity=0.221  Sum_probs=87.8

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..+..+++|++|++++|.+++ +|.     +..+++|++|++++|.+++ +|  ++.+++|++|++++|.+++ +|  ++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~-~~~-----l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~  103 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITD-MTG-----IEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VT  103 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCC-CTT-----GGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred             cChhHcCCCCEEEccCCCccc-Chh-----hcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cC
Confidence            346678999999999999997 463     8899999999999999996 45  8899999999999999996 44  67


Q ss_pred             ccCcCCCCCCCcEEecCcccCcccccccccC-------CCCccCcChhcccccCC
Q 039460          131 WFDILDENGLPFLEQTANRLSLESIDCIQDL-------IYLGGNLPRKTLQQTKI  178 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L-------~~l~g~ip~~l~~l~~L  178 (182)
                      .++     +|++|++++|.+++..+..+++|       |.+++ +|  ++.+++|
T Consensus       104 ~l~-----~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L  150 (457)
T 3bz5_A          104 PLT-----KLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQL  150 (457)
T ss_dssp             TCT-----TCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTC
T ss_pred             CCC-----cCCEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cccCCcC
Confidence            777     99999999999997666666666       55665 43  4455444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.11  E-value=1.4e-10  Score=99.01  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             CCCCcCCCCCCCCCCCc-----cccce-EEcCCC--------------CCCccCCCCCCEEECcCCccccccCccccccc
Q 039460           22 LQNWADAANDENYSNCC-----QWEAV-EKATYE--------------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRL   81 (182)
Q Consensus        22 l~~W~~~~~~~~~~~~c-----~w~gv-~c~~~~--------------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~   81 (182)
                      +.+|...      ..+|     .|.|+ .|....              |..+  +++|++|++++|.|+ .+|.      
T Consensus        33 l~~W~~~------~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip~------   97 (571)
T 3cvr_A           33 WDKWEKQ------ALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLPE------   97 (571)
T ss_dssp             HHHHHTT------CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCCC------
T ss_pred             HHHHhcc------CCccccccchhhhccccccCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-cccc------
Confidence            4567654      4677     69998 564321              2222  356777777777776 3552      


Q ss_pred             CCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460           82 SRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus        82 ~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                       .+++|++|++++|.+++ +|. +..  +|++|+|++|.+++ +|.   .++     +|++|++++|.+++
T Consensus        98 -~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~-----~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           98 -LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPA-----LLEYINADNNQLTM  154 (571)
T ss_dssp             -CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCT-----TCCEEECCSSCCSC
T ss_pred             -ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCc-----cccEEeCCCCccCc
Confidence             25667777777777764 666 444  67777777777764 555   233     56666666666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.09  E-value=6.6e-10  Score=95.53  Aligned_cols=86  Identities=28%  Similarity=0.321  Sum_probs=46.4

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|+|++|.+.+ ++     .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~  173 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG  173 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             hhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence            45555556666666665554 22     255555566666666555532  345555556666666665554333  444


Q ss_pred             cCcCCCCCCCcEEecCcccCc
Q 039460          132 FDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      ++     +|+.|++++|.+++
T Consensus       174 l~-----~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          174 LT-----KLQNLYLSKNHISD  189 (605)
T ss_dssp             CT-----TCCEEECCSSCCCB
T ss_pred             CC-----CCCEEECcCCCCCC
Confidence            44     55556665555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.08  E-value=3.3e-10  Score=90.78  Aligned_cols=103  Identities=13%  Similarity=0.073  Sum_probs=79.4

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCC
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLR  112 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~  112 (182)
                      |+|..|.|...+    |..+  .+++++|+|++|+|+. +|..   .|..+++|++|+|++|.+.+.+|. .|..+++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSE-ECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred             eeCCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCC-cCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence            689999998654    3333  2578999999999985 6652   688999999999999998767765 577888877


Q ss_pred             E-EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          113 C-LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       113 ~-L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      . +.+..|++++..|..+..++     +|+++++++|.++
T Consensus        83 ~~l~~~~N~l~~l~~~~f~~l~-----~L~~L~l~~n~l~  117 (350)
T 4ay9_X           83 EIRIEKANNLLYINPEAFQNLP-----NLQYLLISNTGIK  117 (350)
T ss_dssp             EEEEEEETTCCEECTTSBCCCT-----TCCEEEEEEECCS
T ss_pred             hhhcccCCcccccCchhhhhcc-----ccccccccccccc
Confidence            5 55667888866677777777     7888888888776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=4.5e-10  Score=89.56  Aligned_cols=83  Identities=19%  Similarity=0.183  Sum_probs=73.8

Q ss_pred             CEEECcCC-ccccccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460           60 ESLDLIGN-NIVGCVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE  137 (182)
Q Consensus        60 ~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~  137 (182)
                      ..++++++ .++. +|.     +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|+|++..|..|..++    
T Consensus        11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~----   80 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP----   80 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS----
T ss_pred             CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc----
Confidence            45799998 8885 774     88899999999996 999977778899999999999999999988888888888    


Q ss_pred             CCCCcEEecCcccCcc
Q 039460          138 NGLPFLEQTANRLSLE  153 (182)
Q Consensus       138 ~~L~~l~l~~N~~~~~  153 (182)
                       +|++|+|++|++++.
T Consensus        81 -~L~~L~l~~N~l~~~   95 (347)
T 2ifg_A           81 -RLSRLNLSFNALESL   95 (347)
T ss_dssp             -CCCEEECCSSCCSCC
T ss_pred             -CCCEEeCCCCcccee
Confidence             999999999999854

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.06  E-value=2.6e-11  Score=96.02  Aligned_cols=90  Identities=19%  Similarity=0.124  Sum_probs=57.5

Q ss_pred             ccCCCCCCEEECcCCccccc-cCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccc-ccccc-ccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGC-VENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSN-RLNGS-VVIKV  129 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~-~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N-~l~g~-~p~~~  129 (182)
                      +..+++|++|++++|.+++. +|.    .+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. ++..+
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            44567777777777777654 554    4666777777777777776666677777777777777777 55542 45545


Q ss_pred             cccCcCCCCCCCcEEecCc-ccC
Q 039460          130 FWFDILDENGLPFLEQTAN-RLS  151 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N-~~~  151 (182)
                      ..++     +|++|++++| .++
T Consensus       165 ~~~~-----~L~~L~l~~~~~l~  182 (336)
T 2ast_B          165 SSCS-----RLDELNLSWCFDFT  182 (336)
T ss_dssp             HHCT-----TCCEEECCCCTTCC
T ss_pred             hcCC-----CCCEEcCCCCCCcC
Confidence            5555     4555555555 444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.06  E-value=7.3e-13  Score=98.12  Aligned_cols=96  Identities=21%  Similarity=0.241  Sum_probs=74.4

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|++++|.+++ +|.     +..+++|++|++++|.+. .+|..+..+++|++|++++|++++ +| .+..
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~~-----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-ISS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CCC-----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-ccc-----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence            57778899999999999886 663     778888999999999887 678777777888999999888875 55 5666


Q ss_pred             cCcCCCCCCCcEEecCcccCcc----cccccccC
Q 039460          132 FDILDENGLPFLEQTANRLSLE----SIDCIQDL  161 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L  161 (182)
                      ++     +|++|++++|.++..    .+..+++|
T Consensus       114 l~-----~L~~L~l~~N~i~~~~~~~~l~~l~~L  142 (198)
T 1ds9_A          114 LV-----NLRVLYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             HH-----HSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred             CC-----CCCEEECCCCcCCchhHHHHHhcCCCC
Confidence            66     788888888888742    34444544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.05  E-value=1.3e-09  Score=90.42  Aligned_cols=94  Identities=31%  Similarity=0.412  Sum_probs=54.6

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|++|++++|.+++. ++     +..+++|++|++++|.+.+ ++. +..+++|+.|++++|++++..|  +..+
T Consensus       239 l~~l~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l  308 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNL-AP-----LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNL  308 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCC-GG-----GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred             hhcCCCCCEEECCCCccccc-hh-----hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCC
Confidence            44455556666666655542 21     4556666666666666663 333 5666667777777666664322  4455


Q ss_pred             CcCCCCCCCcEEecCcccCccc-ccccccC
Q 039460          133 DILDENGLPFLEQTANRLSLES-IDCIQDL  161 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~~~-~~~l~~L  161 (182)
                      +     +|++|++++|.+++.. +..+++|
T Consensus       309 ~-----~L~~L~L~~n~l~~~~~~~~l~~L  333 (466)
T 1o6v_A          309 K-----NLTYLTLYFNNISDISPVSSLTKL  333 (466)
T ss_dssp             T-----TCSEEECCSSCCSCCGGGGGCTTC
T ss_pred             C-----CCCEEECcCCcCCCchhhccCccC
Confidence            5     7778888888777542 3344444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.05  E-value=1.2e-09  Score=86.78  Aligned_cols=110  Identities=24%  Similarity=0.342  Sum_probs=67.4

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|++|++++|.+++ ++.     +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ +| .+..+
T Consensus       217 ~~~~~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l  286 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITD-LSP-----LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNL  286 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGC
T ss_pred             hhcCCcCCEEEccCCccCC-Ccc-----hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCC
Confidence            4556667777777776664 332     5667777777777777763 3 346677777777777777764 32 35555


Q ss_pred             CcCCCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460          133 DILDENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +     +|++|++++|.++...   +..+++|       |.+++..|  +..+++|+
T Consensus       287 ~-----~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          287 S-----QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             T-----TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             C-----CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            5     7778888887777442   3444444       45555333  55555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.02  E-value=1.3e-09  Score=90.47  Aligned_cols=79  Identities=23%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD  136 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~  136 (182)
                      ++|++|++++|.+++ +|.     +..+++|++|++++|++++ +|..+   .+|++|++++|++++ +| .++.++   
T Consensus       131 ~~L~~L~L~~n~l~~-lp~-----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~---  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LPE-----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLP---  195 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCT---
T ss_pred             CCCCEEECcCCCCCC-Ccc-----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCC---
Confidence            356666666666654 542     5666666666666666653 44432   356666666666654 44 355555   


Q ss_pred             CCCCCcEEecCcccCc
Q 039460          137 ENGLPFLEQTANRLSL  152 (182)
Q Consensus       137 ~~~L~~l~l~~N~~~~  152 (182)
                        +|+++++++|.+++
T Consensus       196 --~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          196 --FLTAIYADNNSLKK  209 (454)
T ss_dssp             --TCCEEECCSSCCSS
T ss_pred             --CCCEEECCCCcCCc
Confidence              56666666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.00  E-value=4.8e-10  Score=89.19  Aligned_cols=96  Identities=24%  Similarity=0.317  Sum_probs=81.5

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      +..+++|++|++++|.+++ ++     .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++..|..+..+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  310 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-IN-----AVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL  310 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred             hhcCCCCCEEECCCCccCC-Ch-----hHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence            7789999999999999986 44     48899999999999999985 4 458899999999999999998888888888


Q ss_pred             CcCCCCCCCcEEecCcccCccc-ccccccC
Q 039460          133 DILDENGLPFLEQTANRLSLES-IDCIQDL  161 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~~~-~~~l~~L  161 (182)
                      +     +|+++++++|.+++.. +..+++|
T Consensus       311 ~-----~L~~L~L~~n~l~~~~~~~~l~~L  335 (347)
T 4fmz_A          311 T-----NLTTLFLSQNHITDIRPLASLSKM  335 (347)
T ss_dssp             T-----TCSEEECCSSSCCCCGGGGGCTTC
T ss_pred             c-----cCCEEEccCCccccccChhhhhcc
Confidence            8     9999999999998652 3444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.98  E-value=1.6e-10  Score=91.42  Aligned_cols=113  Identities=15%  Similarity=0.072  Sum_probs=90.0

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc-cchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS-IFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~-~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +.++.|++++|.+.+..+.     +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..++  
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~--  142 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS--  142 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT--
T ss_pred             ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC--
Confidence            7899999999999987664     67899999999999999866 888899999999999999999988888888887  


Q ss_pred             CCCCCCcEEecCc-ccCcc----cccccccC-------C-CCccC-cChhccccc-CCC
Q 039460          136 DENGLPFLEQTAN-RLSLE----SIDCIQDL-------I-YLGGN-LPRKTLQQT-KIS  179 (182)
Q Consensus       136 ~~~~L~~l~l~~N-~~~~~----~~~~l~~L-------~-~l~g~-ip~~l~~l~-~L~  179 (182)
                         +|++|++++| .+++.    .+..+++|       + .+++. +|..+..++ +|+
T Consensus       143 ---~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          143 ---NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             ---TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             ---CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence               9999999999 67743    24445555       2 33322 455555555 543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.97  E-value=7.4e-12  Score=92.65  Aligned_cols=117  Identities=22%  Similarity=0.173  Sum_probs=88.4

Q ss_pred             cCCCCCCEEECcCCccccccCcc--cccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENE--GLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~--~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .....++.++++.+.++|.+|.-  +...+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            34567888888889998887740  00037788999999999999985 77 8889999999999999998 78888877


Q ss_pred             cCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcCh--hcccccCCC
Q 039460          132 FDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPR--KTLQQTKIS  179 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~--~l~~l~~L~  179 (182)
                      ++     +|++|++++|.+++. .+..+++|       |.+.+ +|.  .+..+++|+
T Consensus        92 ~~-----~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           92 AD-----TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLE  143 (198)
T ss_dssp             HH-----HCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCS
T ss_pred             CC-----cCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCC
Confidence            77     899999999999853 33444444       34443 343  566666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.94  E-value=1e-10  Score=94.70  Aligned_cols=15  Identities=20%  Similarity=0.255  Sum_probs=6.5

Q ss_pred             CCCCCEEECcCCccc
Q 039460           56 FQQLESLDLIGNNIV   70 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~   70 (182)
                      +++|++|+|++|.+.
T Consensus        93 ~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFG  107 (386)
T ss_dssp             CTTCCEEECCSCCCC
T ss_pred             CCcccEEECCCCcCC
Confidence            344444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.89  E-value=2.5e-09  Score=88.82  Aligned_cols=54  Identities=22%  Similarity=0.095  Sum_probs=25.3

Q ss_pred             CCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460           86 NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus        86 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      +|++|++++|++.+ +|..   +++|++|++++|+++ .+|.   .++     +|+++++++|.+++
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~-----~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ-----NLKQLHVEYNPLRE  371 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT-----TCCEEECCSSCCSS
T ss_pred             cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh-----hccEEECCCCCCCc
Confidence            45555555555543 4432   244555555555554 3443   122     44555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.88  E-value=1.7e-10  Score=89.70  Aligned_cols=80  Identities=23%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             CCCCCCcEEEccCCcCCc--ccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc------
Q 039460           82 SRLSNLKFLRLDFNSFNN--SIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE------  153 (182)
Q Consensus        82 ~~l~~L~~L~L~~n~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~------  153 (182)
                      ..+++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+..+   +|++|++.+|.+++.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l---~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGL---KLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTS---CCSEEECTTSTTGGGCSSHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccC---CcceEEccCCcCccccCcchh
Confidence            357899999999999997  5667788899999999999999854  344444432   799999999999862      


Q ss_pred             ----cccccccCCCCcc
Q 039460          154 ----SIDCIQDLIYLGG  166 (182)
Q Consensus       154 ----~~~~l~~L~~l~g  166 (182)
                          .+..+++|..|.|
T Consensus       242 y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          242 YISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHCTTCCEESS
T ss_pred             HHHHHHHHCcccCeECC
Confidence                3566777776766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.87  E-value=8.8e-10  Score=89.20  Aligned_cols=91  Identities=27%  Similarity=0.327  Sum_probs=50.4

Q ss_pred             ccCCCCCCEEECcCCccc--c---ccCcccccccCCCCCCcEEEccCCcCC----cccchhccCCCCCCEEEcccccccc
Q 039460           53 FTPFQQLESLDLIGNNIV--G---CVENEGLGRLSRLSNLKFLRLDFNSFN----NSIFSSLGGLSSLRCLSLRSNRLNG  123 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~--g---~~p~~~~~~~~~l~~L~~L~L~~n~l~----g~~p~~~~~l~~L~~L~L~~N~l~g  123 (182)
                      +..+++|++|++++|.++  |   .+|.    .+..+++|++|+|++|.++    +.+|..+..+++|++|+|++|.+++
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            334556666666666665  2   2221    2555666666666666664    4555556666666666666666654


Q ss_pred             c----ccccccc--cCcCCCCCCCcEEecCcccCc
Q 039460          124 S----VVIKVFW--FDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       124 ~----~p~~~~~--l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      .    +|..+..  ++     +|++|++++|.++.
T Consensus       259 ~~~~~l~~~l~~~~~~-----~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENI-----GLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHHHHHTCSSC-----CCCEEECCSSCCBH
T ss_pred             hhHHHHHHHHhhccCC-----CeEEEECcCCcCCH
Confidence            3    3333321  33     56666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.82  E-value=7.8e-09  Score=82.77  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcE-EEccCCcCCcccchhccCCCCCCEEEccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKF-LRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVV  126 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~-L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p  126 (182)
                      +..|..+++|++|+|++|.+.+.+|..   .|..+++++. +.+..|++....|..|..+++|++|++++|++++..+
T Consensus        47 ~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           47 KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             HHHHcCCCCCCEEECcCCCCCCccChh---HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence            457899999999999999998888863   6788888776 5667799986667789999999999999999985433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.79  E-value=4.7e-09  Score=89.63  Aligned_cols=104  Identities=21%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +++|++|++++|.+++ +|.       .+++|++|++++|.+++ +|. |.  ++|++|+|++|+++ .+|. +.. . |
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~-L  202 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE-------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-R-N  202 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred             CccccEEeCCCCccCc-CCC-------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-h-h
Confidence            4556666666666654 442       35677777777777774 666 54  67777777777776 5665 322 0 0


Q ss_pred             --CCCCCCcEEecCcccCcc--cccccccC-------CCCccCcChhcccc
Q 039460          136 --DENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLPRKTLQQ  175 (182)
Q Consensus       136 --~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip~~l~~l  175 (182)
                        ....|++|++++|.++.-  .+..+++|       |.+++.+|..++.+
T Consensus       203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence              001126666666666621  22333333       55555566555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.79  E-value=9.6e-09  Score=88.57  Aligned_cols=84  Identities=23%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD  136 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~  136 (182)
                      ++|++|++++|.+++ +|.       .+++|+.|++++|.++ .+|.   .+++|+.|+|++|+++ .+|..+..++   
T Consensus       221 ~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~---  284 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS---  284 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC---
T ss_pred             CCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc---
Confidence            456666666666664 442       3466777777777776 5665   5677888888888887 7787777777   


Q ss_pred             CCCCCcEEecCcccCccccccc
Q 039460          137 ENGLPFLEQTANRLSLESIDCI  158 (182)
Q Consensus       137 ~~~L~~l~l~~N~~~~~~~~~l  158 (182)
                        +|+.|++++|.+++..+..+
T Consensus       285 --~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          285 --SETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             --TTCEEECCSCCCCHHHHHHH
T ss_pred             --ccCEEEecCCCCCCcCHHHH
Confidence              88888888888886644433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.79  E-value=9e-10  Score=88.59  Aligned_cols=94  Identities=20%  Similarity=0.187  Sum_probs=45.5

Q ss_pred             ccCCC-CCCEEECcCCccccccCcccccccCCC-----CCCcEEEccCCcCCcccchhcc----CC-CCCCEEEcccccc
Q 039460           53 FTPFQ-QLESLDLIGNNIVGCVENEGLGRLSRL-----SNLKFLRLDFNSFNNSIFSSLG----GL-SSLRCLSLRSNRL  121 (182)
Q Consensus        53 ~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l-----~~L~~L~L~~n~l~g~~p~~~~----~l-~~L~~L~L~~N~l  121 (182)
                      +..++ +|++|++++|.+++..+.    .+..+     ++|++|++++|.+++..+..+.    .+ ++|++|++++|.+
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  121 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF  121 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence            33445 566666666666554332    23332     5666666666666544444322    22 5666666666666


Q ss_pred             ccccccccccc-CcCCCCCCCcEEecCcccC
Q 039460          122 NGSVVIKVFWF-DILDENGLPFLEQTANRLS  151 (182)
Q Consensus       122 ~g~~p~~~~~l-~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++..+..+... ..+ ..+|++|++++|.++
T Consensus       122 ~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          122 SSKSSSEFKQAFSNL-PASITSLNLRGNDLG  151 (362)
T ss_dssp             GGSCHHHHHHHHTTS-CTTCCEEECTTSCGG
T ss_pred             CcHHHHHHHHHHHhC-CCceeEEEccCCcCC
Confidence            54433332221 000 014555555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.76  E-value=4e-08  Score=84.72  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=20.9

Q ss_pred             CCCcEEecCcccCcccccccccC-------CCCccCcChhcccccCCC
Q 039460          139 GLPFLEQTANRLSLESIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       139 ~L~~l~l~~N~~~~~~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +|++|++++|.++.-. ..+.+|       |.++ .||..+.++++|+
T Consensus       242 ~L~~L~Ls~N~L~~lp-~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~  287 (622)
T 3g06_A          242 ELKELMVSGNRLTSLP-MLPSGLLSLSVYRNQLT-RLPESLIHLSSET  287 (622)
T ss_dssp             TCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred             cCcEEECCCCCCCcCC-cccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence            4556666666555211 122222       5555 5777777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.66  E-value=9.1e-09  Score=82.67  Aligned_cols=98  Identities=19%  Similarity=0.112  Sum_probs=74.1

Q ss_pred             CCCCCCEEECcCCccccccCcccccccCCCC-CCcEEEccCCcCCcccchhccCC-----CCCCEEEccccccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLS-NLKFLRLDFNSFNNSIFSSLGGL-----SSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~l-----~~L~~L~L~~N~l~g~~p~~  128 (182)
                      ..++|++|++++|.+++..+......+..++ +|++|+|++|.+++..+..+..+     ++|++|+|++|.+++..+..
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            3456999999999998754411001577788 89999999999997777777665     99999999999999777765


Q ss_pred             cccc-CcCCCCCCCcEEecCcccCcc
Q 039460          129 VFWF-DILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       129 ~~~l-~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +... ..+ ..+|++|++++|.++..
T Consensus       100 l~~~l~~~-~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A          100 LVKTLAAI-PFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHHHHTS-CTTCCEEECCSSCGGGS
T ss_pred             HHHHHHhC-CCCccEEECcCCcCCcH
Confidence            5443 100 02899999999999855

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.63  E-value=1.8e-09  Score=88.90  Aligned_cols=13  Identities=38%  Similarity=0.266  Sum_probs=6.7

Q ss_pred             CCCcEEecCcccC
Q 039460          139 GLPFLEQTANRLS  151 (182)
Q Consensus       139 ~L~~l~l~~N~~~  151 (182)
                      +|++|++++|.++
T Consensus       342 ~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          342 FLLELQISNNRLE  354 (461)
T ss_dssp             SCCEEECCSSBCH
T ss_pred             CccEEEccCCccc
Confidence            4555555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.59  E-value=3.7e-08  Score=76.45  Aligned_cols=79  Identities=25%  Similarity=0.246  Sum_probs=61.5

Q ss_pred             CCCCCCEEECcCCcccc--ccCcccccccCCCCCCcEEEccCCcCCcccchhccCCC--CCCEEEcccccccccccc---
Q 039460           55 PFQQLESLDLIGNNIVG--CVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS--SLRCLSLRSNRLNGSVVI---  127 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g--~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~--~L~~L~L~~N~l~g~~p~---  127 (182)
                      .+++|++|+|++|.|++  .+|.    .+..+++|+.|+|++|.+.+.  ..+..+.  +|++|+|++|.+.+.+|.   
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchh
Confidence            47899999999999998  4554    456899999999999999854  3344444  999999999999987773   


Q ss_pred             ----cccccCcCCCCCCCcEE
Q 039460          128 ----KVFWFDILDENGLPFLE  144 (182)
Q Consensus       128 ----~~~~l~~l~~~~L~~l~  144 (182)
                          .+..++     +|+.|+
T Consensus       242 y~~~il~~~P-----~L~~LD  257 (267)
T 3rw6_A          242 YISAIRERFP-----KLLRLD  257 (267)
T ss_dssp             HHHHHHHHCT-----TCCEES
T ss_pred             HHHHHHHHCc-----ccCeEC
Confidence                245556     676664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.57  E-value=4.7e-09  Score=86.37  Aligned_cols=71  Identities=24%  Similarity=0.183  Sum_probs=33.8

Q ss_pred             ccCCCCCCEEECcCCccccccCccccccc-CCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEcccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNG  123 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g  123 (182)
                      +..+++|++|++++|.+.+..+......+ ...++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            33466777777777766543221000001 1123555555555555433    33444445555555555555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.23  E-value=7.2e-07  Score=75.47  Aligned_cols=82  Identities=10%  Similarity=0.030  Sum_probs=50.7

Q ss_pred             CCCCCCEEECcCCccccc----cCcccccccCCCCCCcEEEccCCcCC----cccchhccCCCCCCEEEccccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGC----VENEGLGRLSRLSNLKFLRLDFNSFN----NSIFSSLGGLSSLRCLSLRSNRLNGSVV  126 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~L~~n~l~----g~~p~~~~~l~~L~~L~L~~N~l~g~~p  126 (182)
                      .+++|++|++++|.+++.    ++.    .+..+++|++|++++|.++    +.++..+..+++|+.|++++|.+.+ +|
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~  236 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV  236 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred             hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence            456777777777776543    222    2345667777777777765    3344455567777777777777663 55


Q ss_pred             ccccccCcCCCCCCCcEEec
Q 039460          127 IKVFWFDILDENGLPFLEQT  146 (182)
Q Consensus       127 ~~~~~l~~l~~~~L~~l~l~  146 (182)
                      ..+..++     +|+.++++
T Consensus       237 ~~~~~~~-----~L~~L~l~  251 (592)
T 3ogk_B          237 GFFKAAA-----NLEEFCGG  251 (592)
T ss_dssp             HHHHHCT-----TCCEEEEC
T ss_pred             HHHhhhh-----HHHhhccc
Confidence            5555555     56666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.20  E-value=4.7e-07  Score=73.34  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=29.9

Q ss_pred             CCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccc----ccccccccCcCCCCCCCcEEecCcccC
Q 039460           82 SRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGS----VVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus        82 ~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ...++|++|+|++|.++..    ++..+...++|++|+|++|.++..    +...+...+     +|++|++++|.++
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-----~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-----SLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-----SCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-----CCCEEeccCCCCC
Confidence            3444555555555554321    233344444555555555555421    122222223     5556666666555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=4.1e-06  Score=66.20  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=69.3

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCC-EEEcccccccccccccccccCc
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR-CLSLRSNRLNGSVVIKVFWFDI  134 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~-~L~L~~N~l~g~~p~~~~~l~~  134 (182)
                      +++|+++++++|.++ .+|..   .|..+.+|+.++++.| +...-+..|..+++|+ .+++.. .++..-+..|..+. 
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~-  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDF---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD-  297 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-
T ss_pred             cCCCeEEECCCCCcc-eecHh---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc-
Confidence            789999999999988 47763   7899999999999998 7633345789999999 999988 66644456777777 


Q ss_pred             CCCCCCCcEEecCcccC
Q 039460          135 LDENGLPFLEQTANRLS  151 (182)
Q Consensus       135 l~~~~L~~l~l~~N~~~  151 (182)
                          +|+.+++.+|.++
T Consensus       298 ----~L~~l~l~~n~i~  310 (329)
T 3sb4_A          298 ----NLRYVLATGDKIT  310 (329)
T ss_dssp             ----TEEEEEECSSCCC
T ss_pred             ----cCCEEEeCCCccC
Confidence                8999999888776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.18  E-value=3.7e-07  Score=77.25  Aligned_cols=90  Identities=13%  Similarity=0.190  Sum_probs=61.5

Q ss_pred             CCCCCCEEECcCCc--cccccCccccccc-CCCCCCcEEEccCCcCCc-ccchhccCCCCCCEEEccccccccc-ccccc
Q 039460           55 PFQQLESLDLIGNN--IVGCVENEGLGRL-SRLSNLKFLRLDFNSFNN-SIFSSLGGLSSLRCLSLRSNRLNGS-VVIKV  129 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~--l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~  129 (182)
                      .+++|++|+++++.  +++..+.    .+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             hCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence            35666666665422  4433322    12 237788899998888875 3455667888999999999988754 34444


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ..++     +|++|++++|+++..
T Consensus       510 ~~l~-----~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          510 TKLP-----SLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHCS-----SCCEEEEESCBCCTT
T ss_pred             HhcC-----ccCeeECcCCcCCHH
Confidence            5566     889999999998865

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.02  E-value=1.1e-06  Score=71.12  Aligned_cols=92  Identities=21%  Similarity=0.151  Sum_probs=54.7

Q ss_pred             CCCCCEEECcCCccccccCccccccc-CCCCCCcEEEccCCcCCc----ccchhccCCCCCCEEEccccccccc----cc
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNN----SIFSSLGGLSSLRCLSLRSNRLNGS----VV  126 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~L~~N~l~g~----~p  126 (182)
                      +++|++|+|++|.++..-...+...+ ...++|++|+|++|.++.    .++..+..+++|++|+|++|.++..    ++
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            34566666666666532111000011 235677888888887753    2344456677788888888887632    23


Q ss_pred             ccccccCcCCCCCCCcEEecCcccCc
Q 039460          127 IKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       127 ~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      ..+...+     +|++|++++|.++.
T Consensus       205 ~~L~~~~-----~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          205 AQLDRNR-----QLQELNVAYNGAGD  225 (372)
T ss_dssp             HHGGGCS-----CCCEEECCSSCCCH
T ss_pred             HHHhcCC-----CcCeEECCCCCCCH
Confidence            3444444     78888888888874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.01  E-value=2.4e-06  Score=62.38  Aligned_cols=96  Identities=20%  Similarity=0.092  Sum_probs=64.2

Q ss_pred             ccCCCCCCEEECcCC-ccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccc---
Q 039460           53 FTPFQQLESLDLIGN-NIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGS---  124 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~---  124 (182)
                      +...+.|++|+|++| .+...--..+...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            345678999999998 775321100011356678899999999988632    334455667899999999988743   


Q ss_pred             -ccccccccCcCCCCCCCcEEe--cCcccCcc
Q 039460          125 -VVIKVFWFDILDENGLPFLEQ--TANRLSLE  153 (182)
Q Consensus       125 -~p~~~~~l~~l~~~~L~~l~l--~~N~~~~~  153 (182)
                       +...+...+     +|++|++  ++|.++..
T Consensus       112 ~l~~~L~~n~-----~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          112 ALVEALQSNT-----SLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHGGGGCS-----SCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHhCC-----CceEEEecCCCCCCCHH
Confidence             344444444     7888999  77888844

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.93  E-value=1.1e-06  Score=74.34  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             CCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCC-cCCcc-cchhccCCCCCCEEEcccccccccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFN-SFNNS-IFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n-~l~g~-~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+++|++|++++|.+++..+.    .+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLE----LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHH----HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             hCCCCCeEEeeCcEEcHHHHH----HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            456788888888777765444    243 5678888888777 44322 4444456788888888888776544443332


Q ss_pred             cCcCCCCCCCcEEecCcc
Q 039460          132 FDILDENGLPFLEQTANR  149 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~  149 (182)
                      +.. ...+|+.|++++|.
T Consensus       179 ~~~-~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          179 FPD-TYTSLVSLNISCLA  195 (594)
T ss_dssp             SCT-TCCCCCEEECTTCC
T ss_pred             Hhh-cCCcCcEEEecccC
Confidence            210 11267777777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.90  E-value=2.4e-06  Score=62.39  Aligned_cols=96  Identities=16%  Similarity=0.086  Sum_probs=68.3

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEc--cccccccc--
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSL--RSNRLNGS--  124 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L--~~N~l~g~--  124 (182)
                      +...+.|++|+|++|.+...-...+...+...+.|++|+|++|.+...    +...+...+.|++|+|  ++|.+...  
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            344678999999999996431110001345567899999999999743    4566777889999999  88999744  


Q ss_pred             --ccccccccCcCCCCCCCcEEecCcccCcc
Q 039460          125 --VVIKVFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       125 --~p~~~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                        +...+...+     +|++|++++|.+...
T Consensus       141 ~~l~~~L~~n~-----~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          141 MEIANMLEKNT-----TLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHHHCS-----SCCEEECCCSSHHHH
T ss_pred             HHHHHHHHhCC-----CcCEEeccCCCCChH
Confidence              233333334     899999999988643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=8.8e-05  Score=58.45  Aligned_cols=87  Identities=16%  Similarity=0.034  Sum_probs=55.2

Q ss_pred             CCCCcEEEccCCcCCcccch-hccCCCCCCEEEcccccccccccccccccCcCCCCCCC-cEEecCcccC---ccccccc
Q 039460           84 LSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLP-FLEQTANRLS---LESIDCI  158 (182)
Q Consensus        84 l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~-~l~l~~N~~~---~~~~~~l  158 (182)
                      +++|+.++|+.|.+. .+|. .|..+++|+.+++..| ++..-+..|..+.     +|+ .+++.+ .++   ...|..+
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-----~L~~~l~l~~-~l~~I~~~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-----RLAGTLELPA-SVTAIEFGAFMGC  296 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-----TCCEEEEECT-TCCEECTTTTTTC
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh-----hccEEEEEcc-cceEEchhhhhCC
Confidence            567888888888777 4544 6778888888888877 5533344556666     777 888776 333   2345555


Q ss_pred             ccC-------CCCccCcCh-hcccccCCC
Q 039460          159 QDL-------IYLGGNLPR-KTLQQTKIS  179 (182)
Q Consensus       159 ~~L-------~~l~g~ip~-~l~~l~~L~  179 (182)
                      .+|       +.+.. |+. .|..+++|+
T Consensus       297 ~~L~~l~l~~n~i~~-I~~~aF~~~~~L~  324 (329)
T 3sb4_A          297 DNLRYVLATGDKITT-LGDELFGNGVPSK  324 (329)
T ss_dssp             TTEEEEEECSSCCCE-ECTTTTCTTCCCC
T ss_pred             ccCCEEEeCCCccCc-cchhhhcCCcchh
Confidence            555       23332 444 477777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.78  E-value=3.2e-06  Score=71.45  Aligned_cols=63  Identities=16%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             CCCCcEEEccCCcCCcccchhc-cCCCCCCEEEcccccccccccc-cccccCcCCCCCCCcEEecCcccC
Q 039460           84 LSNLKFLRLDFNSFNNSIFSSL-GGLSSLRCLSLRSNRLNGSVVI-KVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus        84 l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+. .+..++     +|++|++++|.++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~L~l~~~~~~  519 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-----TMRSLWMSSCSVS  519 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-----GSSEEEEESSCCB
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-----CCCEEeeeCCCCC
Confidence            5566666666666654433333 4466666666666666433322 222344     6666777666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.33  E-value=0.00013  Score=52.89  Aligned_cols=86  Identities=15%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCc-CCcccchhccCC----CCCCEEEccccc-cccccccccc
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS-FNNSIFSSLGGL----SSLRCLSLRSNR-LNGSVVIKVF  130 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l----~~L~~L~L~~N~-l~g~~p~~~~  130 (182)
                      ..|++||++++.++..--.    .+..+++|++|+|+++. ++..--..+..+    ++|++|+|+++. ++..--..+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            4799999999988653222    47889999999999985 553333345554    479999999874 6643333455


Q ss_pred             ccCcCCCCCCCcEEecCcc-cC
Q 039460          131 WFDILDENGLPFLEQTANR-LS  151 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~-~~  151 (182)
                      .++     +|+.|++++.. ++
T Consensus       137 ~~~-----~L~~L~L~~c~~It  153 (176)
T 3e4g_A          137 HFR-----NLKYLFLSDLPGVK  153 (176)
T ss_dssp             GCT-----TCCEEEEESCTTCC
T ss_pred             cCC-----CCCEEECCCCCCCC
Confidence            555     89999998864 55

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.30  E-value=0.00012  Score=58.91  Aligned_cols=15  Identities=27%  Similarity=0.454  Sum_probs=8.0

Q ss_pred             CCCCCEEECcCCccc
Q 039460           56 FQQLESLDLIGNNIV   70 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~   70 (182)
                      +++|+.|++..+.+.
T Consensus       192 ~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          192 RPNLKSLEIISGGLP  206 (362)
T ss_dssp             CTTCSEEEEECSBCC
T ss_pred             CCCCcEEEEecCCCC
Confidence            455555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.05  E-value=0.0017  Score=44.53  Aligned_cols=56  Identities=18%  Similarity=0.118  Sum_probs=34.0

Q ss_pred             EEECcCCccc-cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           61 SLDLIGNNIV-GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        61 ~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      .++.+++.++ ..+|.    .+  -.+|++|+|++|+|+..-+..|..+++|++|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4566666664 23553    11  235777777777777333345667777777777777663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.79  E-value=0.01  Score=48.18  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=37.9

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS  118 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~  118 (182)
                      ...|..+.+|+.++++.|.++. ++..   .|. ..+|+.+.+..+ +...-...|..+++|+.+++..
T Consensus       173 ~~aF~~c~~L~~l~l~~n~l~~-I~~~---aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTKITK-LPAS---TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSCCSE-ECTT---TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             HHHhhCcccCCeeecCCCcceE-echh---hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            4567778888888888887763 5542   333 456666666533 4422223555666666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.72  E-value=0.0034  Score=42.91  Aligned_cols=57  Identities=14%  Similarity=0.016  Sum_probs=43.5

Q ss_pred             cEEEccCCcCC-cccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460           88 KFLRLDFNSFN-NSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus        88 ~~L~L~~n~l~-g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..++-+++.++ ..+|..+.  ++|+.|+|++|+|+..-+..+..++     +|++|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~-----~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALP-----ALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCT-----TCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhcc-----ccCEEEecCCCee
Confidence            46788888886 36776543  4799999999999943344456666     8999999999887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.37  E-value=0.00059  Score=54.93  Aligned_cols=91  Identities=22%  Similarity=0.199  Sum_probs=64.3

Q ss_pred             CCCCCCEEECcC--Cccccc--c---Cccccccc--CCCCCCcEEEccCCcCCcccchhc---cCCCCCCEEEccccccc
Q 039460           55 PFQQLESLDLIG--NNIVGC--V---ENEGLGRL--SRLSNLKFLRLDFNSFNNSIFSSL---GGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        55 ~l~~L~~L~Ls~--n~l~g~--~---p~~~~~~~--~~l~~L~~L~L~~n~l~g~~p~~~---~~l~~L~~L~L~~N~l~  122 (182)
                      .+++|++|+|+.  |...|.  +   ..    .+  ..+++|++|+|.+|.+....+..+   ..+++|++|+|+.|.+.
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~----~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRP----LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGG----GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHH----HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            689999999864  222221  1   11    12  357899999999998875444433   35789999999999998


Q ss_pred             cc----ccccccccCcCCCCCCCcEEecCcccCccc
Q 039460          123 GS----VVIKVFWFDILDENGLPFLEQTANRLSLES  154 (182)
Q Consensus       123 g~----~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~  154 (182)
                      +.    ++..+..++     +|+.|+++.|.++...
T Consensus       293 d~G~~~L~~~L~~l~-----~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          293 DEGARLLLDHVDKIK-----HLKFINMKYNYLSDEM  323 (362)
T ss_dssp             HHHHHHHHTTHHHHT-----TCSEEECCSBBCCHHH
T ss_pred             hHHHHHHHhhcccCC-----cceEEECCCCcCCHHH
Confidence            63    444445556     8999999999998553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.34  E-value=0.015  Score=47.19  Aligned_cols=63  Identities=16%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             CCccCCCCCCEEECcCCccc----cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcc
Q 039460           51 SLFTPFQQLESLDLIGNNIV----GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLR  117 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~----g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~  117 (182)
                      ..|..+++|+.+++.+|.+.    ..++..   .|..+++|+.+++.. .+...-...|..+++|+.+.+.
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence            34445555555555554432    013321   455555555555552 2431122345555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.77  E-value=0.0062  Score=44.00  Aligned_cols=76  Identities=8%  Similarity=0.121  Sum_probs=50.1

Q ss_pred             CCCcEEEccCCcCCcccchhccCCCCCCEEEccccc-ccccccccccccCcCCCCCCCcEEecCcc-cCcc---cccccc
Q 039460           85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNR-LNGSVVIKVFWFDILDENGLPFLEQTANR-LSLE---SIDCIQ  159 (182)
Q Consensus        85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l~~l~~~~L~~l~l~~N~-~~~~---~~~~l~  159 (182)
                      -.|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+.. -..+|++|+++++. +|..   .+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN-LQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH-HHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc-ccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            469999999998865444567899999999999985 55322222332100 00169999999974 8854   344455


Q ss_pred             cC
Q 039460          160 DL  161 (182)
Q Consensus       160 ~L  161 (182)
                      +|
T Consensus       140 ~L  141 (176)
T 3e4g_A          140 NL  141 (176)
T ss_dssp             TC
T ss_pred             CC
Confidence            55

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.29  E-value=0.076  Score=42.53  Aligned_cols=60  Identities=12%  Similarity=0.210  Sum_probs=27.0

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEcc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLR  117 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~  117 (182)
                      ..|..+..|+.+.+..+..+  +...   .|..+..|+.+.+.. .+. .++. .|..+.+|+.+.+.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~--I~~~---aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp  319 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS--IGTG---AFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIP  319 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE--ECTT---TTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECC
T ss_pred             ceeeecccccEEecccccce--ecCc---ccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeC
Confidence            34555666666666543322  2221   344455555555532 232 2222 34444555555444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.82  E-value=0.0084  Score=44.12  Aligned_cols=91  Identities=11%  Similarity=0.122  Sum_probs=56.0

Q ss_pred             CCCCCEEECcCC-ccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccccccccc
Q 039460           56 FQQLESLDLIGN-NIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        56 l~~L~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      -+.|++|+|++| .+...--..+...+..=+.|+.|+|++|.+...    +...+..-+.|+.|+|+.|.+...--..+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            468999999985 664220000001355567899999999998632    333444557899999999999743222222


Q ss_pred             ccCcC-CCCCCCcEEecCc
Q 039460          131 WFDIL-DENGLPFLEQTAN  148 (182)
Q Consensus       131 ~l~~l-~~~~L~~l~l~~N  148 (182)
                      .  .| ....|+.|++++|
T Consensus       120 ~--aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 R--STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             H--HTTTTCCCSEEECCCC
T ss_pred             H--HHhhCCceeEEECCCC
Confidence            1  11 1126889999765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.40  E-value=0.33  Score=38.34  Aligned_cols=83  Identities=13%  Similarity=0.111  Sum_probs=37.7

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEcccccccccccccccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      +..+..|+.+.+..+ ++ .+...   .|..+.+|+.+.+..+ +. .++ ..|..+.+|+.+.+..+.++..-...|..
T Consensus       236 f~~~~~L~~i~lp~~-v~-~I~~~---aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VT-SIGSF---LLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             TTTCSSCCEEEECTT-CC-EECTT---TTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             ccCCccceEEEcCCC-cc-EeCcc---ccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcC
Confidence            344455555555443 22 12221   3445555555555432 32 222 24555566666666555554222233444


Q ss_pred             cCcCCCCCCCcEEecC
Q 039460          132 FDILDENGLPFLEQTA  147 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~  147 (182)
                      +.     +|+.+.+..
T Consensus       309 c~-----~L~~i~lp~  319 (379)
T 4h09_A          309 CV-----KLSSVTLPT  319 (379)
T ss_dssp             CT-----TCCEEECCT
T ss_pred             CC-----CCCEEEcCc
Confidence            44     555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.14  E-value=0.35  Score=38.61  Aligned_cols=95  Identities=15%  Similarity=0.038  Sum_probs=48.6

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEcccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      ..|..+..++.+....+.+    +..   .|..+.+|+.+.+..+ +. .++ ..|..+.+|+.+++..+ ++..-...|
T Consensus       270 ~~F~~~~~l~~~~~~~~~i----~~~---~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  339 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIV----PEK---TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSF  339 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEE----CTT---TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred             cccccccccceeccCceee----ccc---cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence            3455566666666655432    221   4566667777766543 43 333 35666677777766533 331222344


Q ss_pred             cccCcCCCCCCCcEEecCcccC---cccccccccC
Q 039460          130 FWFDILDENGLPFLEQTANRLS---LESIDCIQDL  161 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~---~~~~~~l~~L  161 (182)
                      ..+.     +|+.+.+..| ++   ...|..+.+|
T Consensus       340 ~~c~-----~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          340 RGCT-----SLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTCT-----TCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cCCC-----CCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4444     5666666544 22   2245555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.96  E-value=0.29  Score=39.07  Aligned_cols=102  Identities=15%  Similarity=0.180  Sum_probs=69.8

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~  128 (182)
                      ...|..+..|+.+.+.. .++ .++..   .|..+.+|+.+++..+ ++ .|. ..|..+.+|+.+.+..+ ++..-...
T Consensus       281 ~~aF~~c~~L~~i~l~~-~i~-~I~~~---aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a  352 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFSS-RIT-ELPES---VFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESA  352 (394)
T ss_dssp             TTTTTTCTTCCEEECCT-TCC-EECTT---TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred             CcccccccccccccCCC-ccc-ccCce---eecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence            45677889999999964 444 36653   7889999999999865 55 443 47889999999999754 54222345


Q ss_pred             ccccCcCCCCCCCcEEecCcccCcccccccccCCCC
Q 039460          129 VFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYL  164 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L~~l  164 (182)
                      |..+.     +|+.+++.++......+....+|..+
T Consensus       353 F~~C~-----~L~~i~~~~~~~~~~~~~~~~~L~~i  383 (394)
T 4gt6_A          353 FSNCT-----ALNNIEYSGSRSQWNAISTDSGLQNL  383 (394)
T ss_dssp             GTTCT-----TCCEEEESSCHHHHHTCBCCCCC---
T ss_pred             hhCCC-----CCCEEEECCceeehhhhhccCCCCEE
Confidence            66667     89999998876554444444454333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.04  E-value=0.57  Score=36.98  Aligned_cols=86  Identities=15%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccc-cc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVV-IK  128 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~  128 (182)
                      ...|..+..|+.+.+..+ +. .++..   .|..+.+|+.+.+..+.+...-...|..+.+|+.+.+..+ ++ .|. ..
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~-~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~a  328 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VK-TVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYA  328 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CS-EECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred             ccccceeehhcccccccc-ce-ecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHH
Confidence            345667888999988654 33 34542   6888999999999988887333457889999999999754 44 333 45


Q ss_pred             ccccCcCCCCCCCcEEecC
Q 039460          129 VFWFDILDENGLPFLEQTA  147 (182)
Q Consensus       129 ~~~l~~l~~~~L~~l~l~~  147 (182)
                      |..+.     +|+.+.+..
T Consensus       329 F~~C~-----~L~~i~ip~  342 (379)
T 4h09_A          329 FKNCK-----ALSTISYPK  342 (379)
T ss_dssp             TTTCT-----TCCCCCCCT
T ss_pred             hhCCC-----CCCEEEECC
Confidence            55666     666666644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.19  E-value=0.75  Score=36.63  Aligned_cols=13  Identities=38%  Similarity=0.309  Sum_probs=6.2

Q ss_pred             ccCCCCCCEEEcc
Q 039460          105 LGGLSSLRCLSLR  117 (182)
Q Consensus       105 ~~~l~~L~~L~L~  117 (182)
                      |..+.+|+.+.+.
T Consensus       293 F~~~~~L~~i~l~  305 (394)
T 4fs7_A          293 FYGCSSLTEVKLL  305 (394)
T ss_dssp             TTTCTTCCEEEEC
T ss_pred             ccccccccccccc
Confidence            4444455555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.81  E-value=0.21  Score=36.58  Aligned_cols=72  Identities=15%  Similarity=0.116  Sum_probs=48.8

Q ss_pred             cCCCCCCcEEEccCC-cCCc----ccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460           81 LSRLSNLKFLRLDFN-SFNN----SIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus        81 ~~~l~~L~~L~L~~n-~l~g----~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +..-+.|++|+|++| .+..    .+-..+..-..|+.|+|++|.+...--..+...-. ....|+.|+++.|.++..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHH
Confidence            445678999999985 6642    23445667789999999999997332222221100 113899999999999944

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 1   CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQ--WEAVEKATYECSLFTPFQQ 58
           C  Q++ AL+Q+K    +   L +W         ++CC   W  V      C   T   +
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPT------TDCCNRTWLGV-----LCDTDTQTYR 51

Query: 59  LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN-SFNNSIFSSLGGLSSLRCLSLR 117
           + +LDL G N+           L+ L  L FL +    +    I  ++  L+ L  L + 
Sbjct: 52  VNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 118 SNRLNGSVVIKVFWFDIL 135
              ++G++   +     L
Sbjct: 110 HTNVSGAIPDFLSQIKTL 127

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 5/108 (4%)

Query: 14  HFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCV 73
                   L+  A      + +      A     ++       + L  LDL  N I G +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260

Query: 74  ENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRL 121
                  L++L  L  L + FN+    I    G L      +  +N+ 
Sbjct: 261 PQG----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 33  NYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRL 92
             +     E  E    + S  +  + L  L L  NNI        +  +S L+ L+ L  
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFF 336

Query: 93  DFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG 123
             N    S  SSL  L+++  LS   N+++ 
Sbjct: 337 ANNKV--SDVSSLANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 53  FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112
            +   +L+ L    N +        +  L+ L+N+ +L    N  ++     L  L+ + 
Sbjct: 325 VSSLTKLQRLFFANNKV------SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRIT 376

Query: 113 CLSLRSN 119
            L L   
Sbjct: 377 QLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 8e-04
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 59  LESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNN----SIFSSLGGLSSLRC 113
           ++SLD+    +     +     L   L   + +RLD           I S+L    +L  
Sbjct: 4   IQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 114 LSLRSNRLNGSVV 126
           L+LRSN L    V
Sbjct: 60  LNLRSNELGDVGV 72

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 59  LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118
              LDL  N I    + +       L NL  L L  N  +     +   L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 119 NRL 121
           N+L
Sbjct: 89  NQL 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.48
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.29
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.26
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.25
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.25
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.16
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.01
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.96
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.59
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.01

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=2.5e-27  Score=186.12  Aligned_cols=137  Identities=26%  Similarity=0.430  Sum_probs=95.8

Q ss_pred             CcHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCc--cccceEEcCCC---------------------CCCccCC
Q 039460            1 CLEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCC--QWEAVEKATYE---------------------CSLFTPF   56 (182)
Q Consensus         1 c~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c--~w~gv~c~~~~---------------------~~~~~~l   56 (182)
                      |.++|++||++||+++ ++ ..+++|...      +|||  .|.||+|+..+                     |+.++.|
T Consensus         3 c~~~e~~aLl~~k~~~~~~-~~l~sW~~~------~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNP-TTLSSWLPT------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCC-GGGTTCCTT------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCHHHHHHHHHHHHHCCCC-CcCCCCCCC------CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcC
Confidence            9999999999999999 65 478999876      6899  59999998531                     4456666


Q ss_pred             CCCCEEECcC-CccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           57 QQLESLDLIG-NNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        57 ~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      ++|++|+|++ |+++|.+|.    .+..+++|++|+|++|++.+..|..+..+..|++++++.|.+.+.+|..+..++  
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~--  149 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP--  149 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--
T ss_pred             cccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc--
Confidence            6666666664 666666665    466666666666666666665555566666666666666666666666666665  


Q ss_pred             CCCCCCcEEecCcccCcc
Q 039460          136 DENGLPFLEQTANRLSLE  153 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~~~  153 (182)
                         .++++++++|.+++.
T Consensus       150 ---~L~~l~l~~n~l~~~  164 (313)
T d1ogqa_         150 ---NLVGITFDGNRISGA  164 (313)
T ss_dssp             ---TCCEEECCSSCCEEE
T ss_pred             ---ccceeeccccccccc
Confidence               566666666665544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=2.1e-15  Score=109.87  Aligned_cols=104  Identities=19%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|..|.|...+    |..+.  +++++|+|++|.|++.++..   .|..+++|++|+|++|.+.+..+..|..+++|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             EcCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccce
Confidence            679999998654    33322  46677777777776544442   4566666666666666666555566666666666


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      |+|++|++++..|..|..++     +|++|++++|.++
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~-----~L~~L~L~~N~l~  115 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLH-----QLKTLNLYDNQIS  115 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCT-----TCCEEECCSSCCC
T ss_pred             eeeccccccccCHHHHhCCC-----cccccccCCcccc
Confidence            66666666644444555555     5666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=4.5e-15  Score=115.38  Aligned_cols=114  Identities=23%  Similarity=0.290  Sum_probs=97.6

Q ss_pred             CCCCCEEECcCCcccc--ccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460           56 FQQLESLDLIGNNIVG--CVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF  132 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g--~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  132 (182)
                      -.+++.|+|++|.++|  .+|.    .+..+++|++|+|++ |.+.|.+|+.|+++++|++|+|++|++.+..|..+..+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~----~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             cEEEEEEECCCCCCCCCCCCCh----HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccch
Confidence            3479999999999998  4777    699999999999987 89999999999999999999999999999888888888


Q ss_pred             CcCCCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCC
Q 039460          133 DILDENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKI  178 (182)
Q Consensus       133 ~~l~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L  178 (182)
                      .     .|++++++.|.+.+..   +..++.+       +.+.|.+|..++.+.++
T Consensus       125 ~-----~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         125 K-----TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             T-----TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             h-----hhcccccccccccccCchhhccCcccceeecccccccccccccccccccc
Confidence            7     8999999999888653   4444444       66778899888877765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2e-13  Score=96.35  Aligned_cols=107  Identities=17%  Similarity=0.045  Sum_probs=88.9

Q ss_pred             CCCccccceEEcCCC----CCCccCCCCCCEEECcCCc-cccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCC
Q 039460           35 SNCCQWEAVEKATYE----CSLFTPFQQLESLDLIGNN-IVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS  109 (182)
Q Consensus        35 ~~~c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~-l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~  109 (182)
                      ..|+.+.+|+|....    |..+..+++|++|++++|+ ++. ++..   .|..+++|+.|++++|+++..-|..|..++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~---~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-LELR---DLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-ECGG---GSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccc-cCch---hhccccccCcceeeccccCCcccccccccc
Confidence            345568899998654    6778889999999998764 774 6553   699999999999999999966677899999


Q ss_pred             CCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          110 SLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       110 ~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      +|++|+|++|+++ .+|.......     +|+.|++++|.+.
T Consensus        81 ~L~~L~Ls~N~l~-~l~~~~~~~~-----~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALE-SLSWKTVQGL-----SLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCS-CCCSTTTCSC-----CCCEEECCSSCCC
T ss_pred             cccceeccCCCCc-ccChhhhccc-----cccccccCCCccc
Confidence            9999999999998 7777665544     7999999999986

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=3.3e-13  Score=98.02  Aligned_cols=95  Identities=22%  Similarity=0.267  Sum_probs=83.6

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|++++|.+.+..+.    .+..+++|++|+|++|++.+..|..|..+++|++|+|++|++++..|..+
T Consensus        47 ~~~f~~l~~L~~L~L~~N~i~~~~~~----~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          47 DGLFGRLPHLVKLELKRNQLTGIEPN----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             SCSGGGCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             ccccCCCceEeeeecccccccccccc----ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh
Confidence            45678899999999999999976665    68899999999999999996667789999999999999999997667777


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ..++     +|+++++++|.+...
T Consensus       123 ~~l~-----~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         123 EHLN-----SLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCT-----TCCEEECTTCCBCCS
T ss_pred             cCCc-----ccccccccccccccc
Confidence            7777     899999999998843

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.7e-12  Score=88.10  Aligned_cols=88  Identities=23%  Similarity=0.258  Sum_probs=71.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccc--ccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVV--IKV  129 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p--~~~  129 (182)
                      .+..+++|++|++++|.++. +|.    .+..+++|++|++++|.++ .+| .+..+++|+++++++|+++. +|  ..+
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~-lp~----~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l   86 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQ-SAAIQPL   86 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCS-SSTTGGG
T ss_pred             ccccCCCCCEEECCCCccCc-chh----hhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCC-CCCchhh
Confidence            46778899999999999984 776    5888999999999999998 455 48889999999999999873 43  356


Q ss_pred             cccCcCCCCCCCcEEecCcccCc
Q 039460          130 FWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      ..++     +|+++++++|+++.
T Consensus        87 ~~~~-----~L~~L~l~~N~i~~  104 (124)
T d1dcea3          87 VSCP-----RLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GGCT-----TCCEEECTTSGGGG
T ss_pred             cCCC-----CCCEEECCCCcCCc
Confidence            6666     88999999998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.2e-12  Score=86.65  Aligned_cols=88  Identities=24%  Similarity=0.263  Sum_probs=73.7

Q ss_pred             CEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCC
Q 039460           60 ESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENG  139 (182)
Q Consensus        60 ~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~  139 (182)
                      ++|++++|+++ .++.     +..+++|++|++++|.++ .+|+.++.+++|++|++++|+++ .+| .+..++     +
T Consensus         1 R~L~Ls~n~l~-~l~~-----l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~-----~   66 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLP-----R   66 (124)
T ss_dssp             SEEECTTSCCS-SCCC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCS-----S
T ss_pred             CEEEcCCCCCC-CCcc-----cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-cccccc-----c
Confidence            57999999998 4554     889999999999999998 78888999999999999999998 455 477777     9


Q ss_pred             CCcEEecCcccCcc----cccccccC
Q 039460          140 LPFLEQTANRLSLE----SIDCIQDL  161 (182)
Q Consensus       140 L~~l~l~~N~~~~~----~~~~l~~L  161 (182)
                      |+++++++|+++..    .+..+++|
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCC
Confidence            99999999999832    34444555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.8e-12  Score=95.21  Aligned_cols=81  Identities=20%  Similarity=0.146  Sum_probs=48.3

Q ss_pred             eEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc
Q 039460           43 VEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS  118 (182)
Q Consensus        43 v~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~  118 (182)
                      |.|...+    |+.+.  +.+++|+|++|.|++ +|..   .|..+++|++|+|++|+++ .+|. ++.+++|++|+|++
T Consensus        15 v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~-l~~~---~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          15 VNCDKRNLTALPPDLP--KDTTILHLSENLLYT-FSLA---TLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECTTSCCSE-EEGG---GGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCS
T ss_pred             EEccCCCCCeeCcCcC--cCCCEEECcCCcCCC-cCHH---Hhhcccccccccccccccc-cccc-cccccccccccccc
Confidence            6776543    33332  457777777777765 3331   5667777777777777776 4443 45666777777777


Q ss_pred             cccccccccccccc
Q 039460          119 NRLNGSVVIKVFWF  132 (182)
Q Consensus       119 N~l~g~~p~~~~~l  132 (182)
                      |++++ ++..+..+
T Consensus        87 N~l~~-~~~~~~~l   99 (266)
T d1p9ag_          87 NQLQS-LPLLGQTL   99 (266)
T ss_dssp             SCCSS-CCCCTTTC
T ss_pred             ccccc-cccccccc
Confidence            76653 34443333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1e-11  Score=94.85  Aligned_cols=121  Identities=17%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|++++|.+....+.    .+..+.+|+.+++++|.+++..+..|..+++|+.|++++|++++..+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             chhhcccccCCEEecCCccccccccc----ccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence            45677788888888888887654333    46677778888888888875445567777888888888888876556666


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ..++     +|+++++++|++++.   .+..+.+|       |.+.+..|..|+.+++|+
T Consensus       174 ~~l~-----~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         174 RGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             cccc-----ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            6666     777888888777733   34444444       555654445566666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.6e-11  Score=91.89  Aligned_cols=122  Identities=20%  Similarity=0.198  Sum_probs=80.3

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +..|..+++|++|+|++|.|+. +|.     +..+++|++|++++|++. .++..+..+++|++|++++|.+.+..+..+
T Consensus        48 ~~~f~~l~~L~~L~L~~N~l~~-l~~-----~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  120 (266)
T d1p9ag_          48 LATLMPYTRLTQLNLDRAELTK-LQV-----DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL  120 (266)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCE-EEC-----CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred             HHHhhccccccccccccccccc-ccc-----cccccccccccccccccc-ccccccccccccccccccccccceeecccc
Confidence            3457778888888888888873 554     567788888888888877 456667777777777777777764333333


Q ss_pred             cccCcC-------------------CCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460          130 FWFDIL-------------------DENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l-------------------~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ..+..+                   ...+++++++++|+++..   .+..+.+|       |+|+ .||+++..+++|+
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC
Confidence            222211                   123677888888887744   34445554       5666 5888877777664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.5e-12  Score=88.59  Aligned_cols=87  Identities=21%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccc--ccc
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI--KVF  130 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~  130 (182)
                      +..+++|++|++++|.++. ++.     +..+++|++|++++|.++...+..+..+++|+.|++++|+++ .++.  .+.
T Consensus        37 ~~~l~~L~~L~Ls~N~i~~-l~~-----~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~  109 (162)
T d1a9na_          37 GATLDQFDAIDFSDNEIRK-LDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLA  109 (162)
T ss_dssp             GGGTTCCSEEECCSSCCCE-ECC-----CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred             ccccccCCEEECCCCCCCc-cCC-----cccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccc
Confidence            3456666777777776663 442     666666777777777666322233445666777777776665 2332  344


Q ss_pred             ccCcCCCCCCCcEEecCcccC
Q 039460          131 WFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .++     +|+++++++|.++
T Consensus       110 ~l~-----~L~~L~l~~N~i~  125 (162)
T d1a9na_         110 SLK-----SLTYLCILRNPVT  125 (162)
T ss_dssp             GCT-----TCCEEECCSSGGG
T ss_pred             ccc-----ccchhhcCCCccc
Confidence            444     6667777776665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.5e-12  Score=88.04  Aligned_cols=97  Identities=22%  Similarity=0.180  Sum_probs=77.9

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-cc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VF  130 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~  130 (182)
                      .+.+...+++|+|++|+|+. ++.    .+..+++|++|++++|.+. .++ .|..+++|++|++++|+++. +|+. +.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~----~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~-l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IEN----LGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICR-IGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC----GGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCE-ECSCHHH
T ss_pred             hccCcCcCcEEECCCCCCCc-cCc----cccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccC-CCccccc
Confidence            45667789999999999985 665    3578999999999999998 564 58899999999999999984 5544 45


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc----cccccccC
Q 039460          131 WFDILDENGLPFLEQTANRLSLE----SIDCIQDL  161 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L  161 (182)
                      .++     +|+.|++++|+++.-    .+..+++|
T Consensus        85 ~l~-----~L~~L~L~~N~i~~~~~l~~l~~l~~L  114 (162)
T d1a9na_          85 ALP-----DLTELILTNNSLVELGDLDPLASLKSL  114 (162)
T ss_dssp             HCT-----TCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred             ccc-----ccccceecccccccccccccccccccc
Confidence            677     899999999998732    34455555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.5e-11  Score=92.67  Aligned_cols=94  Identities=23%  Similarity=0.218  Sum_probs=69.7

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..|..+++|++|++++|.+++..+.    .|..+++|+++++++|++.+..|..|..+++|++|++++|++.+..|..+.
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~----~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~  222 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA  222 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred             hHhccccchhhcccccCcccccchh----hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccc
Confidence            4566677788888888887754343    577788888888888888777777778888888888888888766666666


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc
Q 039460          131 WFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      .+.     +|+++++++|.+...
T Consensus       223 ~~~-----~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         223 PLR-----ALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TCT-----TCCEEECCSSCEECS
T ss_pred             ccc-----ccCEEEecCCCCCCC
Confidence            666     788888888877743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=1.6e-10  Score=88.78  Aligned_cols=100  Identities=23%  Similarity=0.252  Sum_probs=79.4

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC  113 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  113 (182)
                      |.|.+|.|...+    |..+.  +.+++|++++|+++. +|+.   .|..+++|++|++++|.+....|..|..+++|++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~-l~~~---~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITE-IKDG---DFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCC-BCTT---TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             ecCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCC-cChh---HhhccccccccccccccccccchhhhhCCCccCE
Confidence            689999998754    44443  689999999999985 6642   6899999999999999999666788999999999


Q ss_pred             EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      |++++|+++ .+|..+.  .     .++.+.+..|.+.
T Consensus        84 L~l~~n~l~-~l~~~~~--~-----~l~~L~~~~n~l~  113 (305)
T d1xkua_          84 LYLSKNQLK-ELPEKMP--K-----TLQELRVHENEIT  113 (305)
T ss_dssp             EECCSSCCS-BCCSSCC--T-----TCCEEECCSSCCC
T ss_pred             ecccCCccC-cCccchh--h-----hhhhhhccccchh
Confidence            999999998 6776542  2     4556666666555

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=8.3e-10  Score=80.70  Aligned_cols=117  Identities=23%  Similarity=0.276  Sum_probs=78.8

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..+..+++|++|++++|.+++ +++     +..+++|++|++++|+++ .+| .+..+++|+.|++++|.+. .++ .+.
T Consensus        62 ~~l~~l~~L~~L~L~~n~i~~-l~~-----~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~  131 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLV  131 (210)
T ss_dssp             TTGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CCG-GGG
T ss_pred             hhHhhCCCCCEEeCCCccccC-ccc-----cccCcccccccccccccc-ccc-ccccccccccccccccccc-ccc-ccc
Confidence            346778899999999999886 453     678889999999999887 455 4778888899988888775 332 233


Q ss_pred             ccCcC-----------------CCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460          131 WFDIL-----------------DENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       131 ~l~~l-----------------~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      .++.+                 ...+|+++++++|.++.. .+..+++|       |.++. +| ++..+++|+
T Consensus       132 ~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~  203 (210)
T d1h6ta2         132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD  203 (210)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCC
Confidence            33211                 113677788888877743 34445544       44443 54 466666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=8.4e-10  Score=79.98  Aligned_cols=63  Identities=21%  Similarity=0.332  Sum_probs=37.8

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      .+..+++|++|++++|.+++ +++     +..+++|++|++++|.+. .++. +..++.|+.++++++.+.
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~-~~~-----l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~~~~~~  119 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTD-ITP-----LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQIT  119 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCC
T ss_pred             ccccCCCcCcCccccccccC-ccc-----ccCCcccccccccccccc-cccc-cccccccccccccccccc
Confidence            35567777777777777765 332     566666777777666655 3332 445555555555555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.01  E-value=4.6e-10  Score=86.11  Aligned_cols=86  Identities=30%  Similarity=0.261  Sum_probs=69.9

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +++|+.|++++|...+..+.    .+..++.+++|++++|.+.+..+..+..+++|++|+|++|+++ .+|..+..++  
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~--  242 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK--  242 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS--
T ss_pred             CCccCEEECCCCcCCCCChh----Hhhccccccccccccccccccccccccccccceeeeccccccc-cccccccccc--
Confidence            56778888888877776665    5788888888888888888766777888888899999888887 6788887777  


Q ss_pred             CCCCCCcEEecCcccC
Q 039460          136 DENGLPFLEQTANRLS  151 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~  151 (182)
                         +|++|++++|+++
T Consensus       243 ---~L~~L~Ls~N~i~  255 (305)
T d1xkua_         243 ---YIQVVYLHNNNIS  255 (305)
T ss_dssp             ---SCCEEECCSSCCC
T ss_pred             ---CCCEEECCCCccC
Confidence               8888888888877

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=3.8e-09  Score=76.38  Aligned_cols=113  Identities=20%  Similarity=0.268  Sum_probs=83.8

Q ss_pred             CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460           51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF  130 (182)
Q Consensus        51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  130 (182)
                      ..+..+++|++|++++|.+.. ++.     +..+++|+.|+++++.+.. + ..+..+++|+.|++++|++. .++ .+.
T Consensus        78 ~~l~~l~~L~~L~l~~n~~~~-~~~-----l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~  147 (199)
T d2omxa2          78 TPLKNLTKLVDILMNNNQIAD-ITP-----LANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALS  147 (199)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC-CGG-----GTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGT
T ss_pred             ccccCCccccccccccccccc-ccc-----ccccccccccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-ccc
Confidence            347788999999999999874 553     7889999999999888763 3 34778899999999999886 344 455


Q ss_pred             ccCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCCC
Q 039460          131 WFDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKISE  180 (182)
Q Consensus       131 ~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~~  180 (182)
                      .++     +++++++.+|.++.- .+..+++|       |.++. +| .++.+++|++
T Consensus       148 ~~~-----~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         148 GLT-----SLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLES  198 (199)
T ss_dssp             TCT-----TCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSE
T ss_pred             ccc-----cccccccccccccCCccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCc
Confidence            666     888999999988754 35556666       44443 44 4777777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=4.9e-09  Score=76.46  Aligned_cols=96  Identities=26%  Similarity=0.320  Sum_probs=64.3

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc---------------------hhccCCCC
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF---------------------SSLGGLSS  110 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p---------------------~~~~~l~~  110 (182)
                      .+..+++|++|++++|++++ +|.     +..+++|+.|++++|.+. .++                     ..+..+++
T Consensus        85 ~~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~  157 (210)
T d1h6ta2          85 PLANLKNLGWLFLDENKVKD-LSS-----LKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTK  157 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-GGG-----GTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             ccccCccccccccccccccc-ccc-----cccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            45677888888888888875 443     666677777777666554 221                     23445677


Q ss_pred             CCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc-cccccccC
Q 039460          111 LRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE-SIDCIQDL  161 (182)
Q Consensus       111 L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L  161 (182)
                      |+++++++|++++ +++ +..++     +|+.|++++|.++.- .+..+++|
T Consensus       158 L~~l~l~~n~l~~-i~~-l~~l~-----~L~~L~Ls~N~i~~l~~l~~l~~L  202 (210)
T d1h6ta2         158 LDTLSLEDNQISD-IVP-LAGLT-----KLQNLYLSKNHISDLRALAGLKNL  202 (210)
T ss_dssp             CSEEECCSSCCCC-CGG-GTTCT-----TCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             ccccccccccccc-ccc-ccCCC-----CCCEEECCCCCCCCChhhcCCCCC
Confidence            8888888888774 332 55666     899999999998742 34444444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.88  E-value=1.7e-09  Score=84.64  Aligned_cols=87  Identities=23%  Similarity=0.367  Sum_probs=65.2

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+..++.+++..|.+++ ++     .+..+++++.|++++|++++. + .+..+++|+.|++++|++++ ++ .+..
T Consensus       280 ~~~~~~~l~~l~~~~n~l~~-~~-----~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~  349 (384)
T d2omza2         280 PLAGLTALTNLELNENQLED-IS-----PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLAN  349 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCSC-CG-----GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             cccccccccccccccccccc-cc-----ccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcC
Confidence            45667788888888888876 33     367788888888888888753 3 26778888888888888873 44 4666


Q ss_pred             cCcCCCCCCCcEEecCcccCcc
Q 039460          132 FDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      ++     +|++|++++|++++.
T Consensus       350 l~-----~L~~L~l~~N~l~~l  366 (384)
T d2omza2         350 LT-----NINWLSAGHNQISDL  366 (384)
T ss_dssp             CT-----TCCEEECCSSCCCBC
T ss_pred             CC-----CCCEEECCCCcCCCC
Confidence            66     888888888888754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.7e-09  Score=72.21  Aligned_cols=86  Identities=19%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCc-CCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS-FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      ...+.++.+++.+.. +|.    .+..+++|++|++++|+ +...-+..|..+++|+.|++++|+++..-|..|..++  
T Consensus         8 ~~~~~l~c~~~~~~~-~p~----~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~--   80 (156)
T d2ifga3           8 HGSSGLRCTRDGALD-SLH----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP--   80 (156)
T ss_dssp             SSSSCEECCSSCCCT-TTT----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS--
T ss_pred             CCCCeEEecCCCCcc-Ccc----cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc--
Confidence            345678999988874 566    58889999999998764 8744456799999999999999999966677788888  


Q ss_pred             CCCCCCcEEecCcccCc
Q 039460          136 DENGLPFLEQTANRLSL  152 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~~  152 (182)
                         +|++|++++|+++.
T Consensus        81 ---~L~~L~Ls~N~l~~   94 (156)
T d2ifga3          81 ---RLSRLNLSFNALES   94 (156)
T ss_dssp             ---CCCEEECCSSCCSC
T ss_pred             ---cccceeccCCCCcc
Confidence               99999999999984

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=9.3e-09  Score=80.33  Aligned_cols=113  Identities=26%  Similarity=0.274  Sum_probs=68.3

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc--------------------hhccCCCCC
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF--------------------SSLGGLSSL  111 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p--------------------~~~~~l~~L  111 (182)
                      .+..+++|+.|++++|.+++. +.     +..+++|++|+++++.+.+..+                    ..+..++++
T Consensus       236 ~l~~l~~L~~L~l~~n~l~~~-~~-----~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l  309 (384)
T d2omza2         236 TLASLTNLTDLDLANNQISNL-AP-----LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL  309 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCC-GG-----GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred             hhhcccccchhccccCccCCC-Cc-----ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhccc
Confidence            445566677777777766652 22     5566666666666666653211                    124455667


Q ss_pred             CEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460          112 RCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       112 ~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      +.|++++|++++. ++ +..++     +|+.|++++|.++.- .+..+++|       |.+++ +++ +.++++|+
T Consensus       310 ~~L~ls~n~l~~l-~~-l~~l~-----~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~-l~~-l~~l~~L~  376 (384)
T d2omza2         310 TYLTLYFNNISDI-SP-VSSLT-----KLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD-LTP-LANLTRIT  376 (384)
T ss_dssp             SEEECCSSCCSCC-GG-GGGCT-----TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCB-CGG-GTTCTTCS
T ss_pred             CeEECCCCCCCCC-cc-cccCC-----CCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence            7777777777643 22 55555     788888888888743 35666665       56665 333 66666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.2e-09  Score=76.26  Aligned_cols=103  Identities=13%  Similarity=0.118  Sum_probs=78.8

Q ss_pred             ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCC
Q 039460           38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLR  112 (182)
Q Consensus        38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~  112 (182)
                      |....|.|...+    |+.+.  +.+++|++++|.++. +|..   .|..+++|++|++++|.+...++. .|..++.++
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~-l~~~---~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   81 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCE-ECTT---TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred             CcCCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCc-cChh---Hhhccchhhhhhhccccccceeeccccccccccc
Confidence            567789997643    33332  579999999999985 6652   688999999999999988765554 677889999


Q ss_pred             EEEcc-cccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460          113 CLSLR-SNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       113 ~L~L~-~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .+.+. .|++....+..+..++     +|+++++.+|.++
T Consensus        82 ~l~~~~~n~l~~~~~~~~~~l~-----~L~~l~l~~~~l~  116 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEAFQNLP-----NLQYLLISNTGIK  116 (242)
T ss_dssp             EEEEECCTTCCEECTTSEECCT-----TCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccc-----cccccccchhhhc
Confidence            98875 4677766666677777     8888888888776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.73  E-value=1.2e-10  Score=84.74  Aligned_cols=86  Identities=22%  Similarity=0.254  Sum_probs=63.2

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+..+++|++|+|++|.++. ++.     +..+++|++|++++|.++ .+|..+..+++|++|++++|+++. ++ .+..
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~~-----l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-ISS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CCC-----HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             HHhcccccceeECcccCCCC-ccc-----ccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccc
Confidence            46678888888888888874 553     777888888888888887 566655556678888888888873 43 3555


Q ss_pred             cCcCCCCCCCcEEecCcccC
Q 039460          132 FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ++     +|++|++++|+++
T Consensus       114 l~-----~L~~L~L~~N~i~  128 (198)
T d1m9la_         114 LV-----NLRVLYMSNNKIT  128 (198)
T ss_dssp             HH-----HSSEEEESEEECC
T ss_pred             cc-----cccccccccchhc
Confidence            55     6777777777776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=2e-08  Score=73.73  Aligned_cols=86  Identities=22%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW  131 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  131 (182)
                      .+...+.+..+.++.+.+....      .+..+++|++|++++|.+... + .++.+++|+.|++++|++++ ++. +..
T Consensus       124 ~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~-l~~-l~~  193 (227)
T d1h6ua2         124 PLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD-ISP-LAS  193 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGG
T ss_pred             hhccccchhhhhchhhhhchhh------hhccccccccccccccccccc-h-hhcccccceecccCCCccCC-Chh-hcC
Confidence            4556678888888888876532      256778888888888887632 2 37788888888888888874 443 566


Q ss_pred             cCcCCCCCCCcEEecCcccCc
Q 039460          132 FDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       132 l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      ++     +|++|++++|+++.
T Consensus       194 l~-----~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         194 LP-----NLIEVHLKNNQISD  209 (227)
T ss_dssp             CT-----TCCEEECTTSCCCB
T ss_pred             CC-----CCCEEECcCCcCCC
Confidence            66     78888888888774

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=1e-07  Score=69.74  Aligned_cols=113  Identities=24%  Similarity=0.357  Sum_probs=82.8

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      .+.+..++.|++++++.+...+. +     .+...+.++.+.++.+.+....  .+..+++|+.|++++|.+.+. + .+
T Consensus       100 i~~l~~l~~L~~l~l~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~-~l  169 (227)
T d1h6ua2         100 VSAIAGLQSIKTLDLTSTQITDV-T-----PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-T-PL  169 (227)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-G-GG
T ss_pred             ccccccccccccccccccccccc-c-----hhccccchhhhhchhhhhchhh--hhccccccccccccccccccc-h-hh
Confidence            34577889999999999988763 2     3677888999999988886432  366788999999999988743 2 26


Q ss_pred             cccCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460          130 FWFDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS  179 (182)
Q Consensus       130 ~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~  179 (182)
                      ..++     +|+.+++++|+++.- .+..+++|       |.++. +|+ ++++++|+
T Consensus       170 ~~l~-----~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~  220 (227)
T d1h6ua2         170 ANLS-----KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD-VSP-LANTSNLF  220 (227)
T ss_dssp             TTCT-----TCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCC
T ss_pred             cccc-----cceecccCCCccCCChhhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCC
Confidence            6676     899999999988843 35556666       55554 543 66777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.55  E-value=6.8e-10  Score=80.72  Aligned_cols=89  Identities=26%  Similarity=0.244  Sum_probs=72.0

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccc--c
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVV--I  127 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p--~  127 (182)
                      .+.+..+++|++|++++|.++. +|.    .+..+++|++|++++|.++ .++ .+..+++|++|++++|+++ .++  .
T Consensus        63 i~~l~~l~~L~~L~Ls~N~i~~-i~~----~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~-~~~~~~  134 (198)
T d1m9la_          63 ISSLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT-NWGEID  134 (198)
T ss_dssp             CCCHHHHTTCCEEECCEEEECS-CSS----HHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECC-CHHHHH
T ss_pred             cccccCCccccChhhccccccc-ccc----ccccccccccccccccccc-ccc-cccccccccccccccchhc-cccccc
Confidence            3457788999999999999974 665    2445678999999999998 454 4778899999999999997 344  3


Q ss_pred             cccccCcCCCCCCCcEEecCcccC
Q 039460          128 KVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       128 ~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .+..++     +|++|++++|+++
T Consensus       135 ~l~~l~-----~L~~L~L~~N~l~  153 (198)
T d1m9la_         135 KLAALD-----KLEDLLLAGNPLY  153 (198)
T ss_dssp             HHTTTT-----TCSEEEECSSHHH
T ss_pred             cccCCC-----ccceeecCCCccc
Confidence            466666     8999999999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.28  E-value=2.6e-06  Score=65.02  Aligned_cols=77  Identities=22%  Similarity=0.181  Sum_probs=53.4

Q ss_pred             CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460           56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL  135 (182)
Q Consensus        56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l  135 (182)
                      +++|++|++++|+|+ .+|.    .   +.+|+.|++++|+++ .++..   .+.|++|++++|.+. .+|. ++.++  
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~----~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~--  120 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPE----L---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSS--  120 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCC----C---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCT--
T ss_pred             CCCCCEEECCCCCCc-cccc----c---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhc--
Confidence            357788888888887 4664    2   356778888887776 44431   145888888888887 5664 45555  


Q ss_pred             CCCCCCcEEecCcccC
Q 039460          136 DENGLPFLEQTANRLS  151 (182)
Q Consensus       136 ~~~~L~~l~l~~N~~~  151 (182)
                         +|+++++++|.++
T Consensus       121 ---~L~~L~l~~~~~~  133 (353)
T d1jl5a_         121 ---FLKIIDVDNNSLK  133 (353)
T ss_dssp             ---TCCEEECCSSCCS
T ss_pred             ---cceeecccccccc
Confidence               7888888877766

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.1e-06  Score=64.45  Aligned_cols=71  Identities=20%  Similarity=0.352  Sum_probs=59.4

Q ss_pred             CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEcccccccc
Q 039460           50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSNRLNG  123 (182)
Q Consensus        50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N~l~g  123 (182)
                      +..|..+++|++|++++|.+...++..   .|..++.++++.+.. |.+....+..|..+++|+++++.+|.+..
T Consensus        46 ~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          46 KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTTTTTCTTCCEEEEESCTTCCEECSS---SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             hhHhhccchhhhhhhccccccceeecc---ccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            446888999999999999998777653   678899999998764 67776667788999999999999999873

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.22  E-value=3e-06  Score=64.60  Aligned_cols=84  Identities=20%  Similarity=0.198  Sum_probs=64.1

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD  136 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~  136 (182)
                      .++++|||+++.++ .+|.       .+++|++|++++|+++ .+|..+   .+|+.|++++|.++ .++.    ++   
T Consensus        38 ~~l~~LdLs~~~L~-~lp~-------~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~----lp---   97 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE-------LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD----LP---   97 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS-------CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS----CC---
T ss_pred             cCCCEEEeCCCCCC-CCCC-------CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh----hc---
Confidence            36899999999998 4775       2468999999999998 788754   57999999999987 5553    22   


Q ss_pred             CCCCCcEEecCcccCcc-cccccccC
Q 039460          137 ENGLPFLEQTANRLSLE-SIDCIQDL  161 (182)
Q Consensus       137 ~~~L~~l~l~~N~~~~~-~~~~l~~L  161 (182)
                       ..|++|++++|.++.- .+..+++|
T Consensus        98 -~~L~~L~L~~n~l~~lp~~~~l~~L  122 (353)
T d1jl5a_          98 -PLLEYLGVSNNQLEKLPELQNSSFL  122 (353)
T ss_dssp             -TTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred             -cccccccccccccccccchhhhccc
Confidence             2689999999998733 23344444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3.3e-07  Score=63.94  Aligned_cols=65  Identities=25%  Similarity=0.153  Sum_probs=37.3

Q ss_pred             CCCCCCcEEEccCCcCCcc--cchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460           82 SRLSNLKFLRLDFNSFNNS--IFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS  151 (182)
Q Consensus        82 ~~l~~L~~L~L~~n~l~g~--~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~  151 (182)
                      ..++.|++|+|++|+++..  ++..+..+++|+.|+|++|.++ .+++ +..+.   ...|+.+++.+|.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~-l~~l~---~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERE-LDKIK---GLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGG-HHHHT---TCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchh-hhhhh---ccccceeecCCCCcC
Confidence            3466677777777776532  2334556677777777777776 3333 11121   225666777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3.2e-07  Score=64.00  Aligned_cols=70  Identities=24%  Similarity=0.189  Sum_probs=53.0

Q ss_pred             cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEccccccccccc
Q 039460           54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVV  126 (182)
Q Consensus        54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p  126 (182)
                      ..++.|++|++++|+++.. +.. ...+..+++|+.|++++|.++ .+++ .+....+|+.+++++|.+.....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l-~~~-~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRL-DDM-SSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCC-SGG-GTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HhCCCCCEeeCCCccccCC-chh-HHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcc
Confidence            4688999999999999853 210 013567899999999999998 4554 34455679999999999986544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.4e-05  Score=60.16  Aligned_cols=61  Identities=23%  Similarity=0.188  Sum_probs=39.3

Q ss_pred             CCCCCcEEEccCC-cCCcccchhccCCCCCCEEEccc-ccccccccccccccCcCCCCCCCcEEecCc
Q 039460           83 RLSNLKFLRLDFN-SFNNSIFSSLGGLSSLRCLSLRS-NRLNGSVVIKVFWFDILDENGLPFLEQTAN  148 (182)
Q Consensus        83 ~l~~L~~L~L~~n-~l~g~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N  148 (182)
                      .+++|++|+++++ .++......+.++++|++|++++ +.++......++.++     +|+.++++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~-----~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-----TLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-----TCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC-----CCCEEeeeCC
Confidence            4566777777764 35655666667777777777776 355554445555555     6777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=5.2e-07  Score=71.22  Aligned_cols=89  Identities=20%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CCCCCCEEECcCCccccc----cCcccccccCCCCCCcEEEccCCcCCcc----cchhcc-CCCCCCEEEccccccccc-
Q 039460           55 PFQQLESLDLIGNNIVGC----VENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLG-GLSSLRCLSLRSNRLNGS-  124 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~-~l~~L~~L~L~~N~l~g~-  124 (182)
                      .++++++|+|++|.++..    +..    .+..+++|++|+|++|.++..    +...+. ...+|+.|+|++|+++.. 
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~----~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~  100 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISS----ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG  100 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHH----HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHH----HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccc
Confidence            345566666666655421    111    244555666666666655311    111221 123566666666665432 


Q ss_pred             ---ccccccccCcCCCCCCCcEEecCcccCc
Q 039460          125 ---VVIKVFWFDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       125 ---~p~~~~~l~~l~~~~L~~l~l~~N~~~~  152 (182)
                         ++..+..++     +|+++++++|.++.
T Consensus       101 ~~~l~~~l~~~~-----~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         101 CGVLSSTLRTLP-----TLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHHHTTSCT-----TCCEEECCSSBCHH
T ss_pred             cccccchhhccc-----cccccccccccchh
Confidence               223333333     56666666666553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5.1e-06  Score=62.69  Aligned_cols=59  Identities=25%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc
Q 039460           57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS  118 (182)
Q Consensus        57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~  118 (182)
                      ..|++||++++.++......   -+..+++|++|+++++.++...+..++.+++|++|++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~---l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHG---ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHH---HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHH---HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            35555566555554332110   244555555555555555545555555555555555555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.3e-06  Score=66.48  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=17.8

Q ss_pred             CCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccc
Q 039460           86 NLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLN  122 (182)
Q Consensus        86 ~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~  122 (182)
                      +|++|++++|.++..    ++..+..+++|++|++++|.++
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            455555555554321    2333444555555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.63  E-value=9.1e-06  Score=62.58  Aligned_cols=94  Identities=26%  Similarity=0.299  Sum_probs=54.8

Q ss_pred             CCCCCCEEECcCCccccc-----cCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEcccccccccc
Q 039460           55 PFQQLESLDLIGNNIVGC-----VENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGSV  125 (182)
Q Consensus        55 ~l~~L~~L~Ls~n~l~g~-----~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~  125 (182)
                      ..+.+++|++++|.++..     +..    .+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++.-
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~----~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             hhhhhcccccccccccccccccchhh----hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            456777777777776532     111    355667777788877776422    3345566777778888777776432


Q ss_pred             cccccc-cCcCCCCCCCcEEecCcccCc
Q 039460          126 VIKVFW-FDILDENGLPFLEQTANRLSL  152 (182)
Q Consensus       126 p~~~~~-l~~l~~~~L~~l~l~~N~~~~  152 (182)
                      ...+.. +.......|+.|++++|.++.
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            222211 111112367777777777763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.61  E-value=8.4e-06  Score=62.78  Aligned_cols=93  Identities=25%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             CccCCCCCCEEECcCCccccc----cCcccccccCCCCCCcEEEccCCcCCcccc----hhcc--CCCCCCEEEcccccc
Q 039460           52 LFTPFQQLESLDLIGNNIVGC----VENEGLGRLSRLSNLKFLRLDFNSFNNSIF----SSLG--GLSSLRCLSLRSNRL  121 (182)
Q Consensus        52 ~~~~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p----~~~~--~l~~L~~L~L~~N~l  121 (182)
                      .+..+++|+.|++++|.++..    +..    .+...++|++|+|++|.++..-.    ..+.  ..+.|++|++++|++
T Consensus       210 ~l~~~~~L~~L~Ls~N~i~~~g~~~L~~----~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         210 GLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             hhcchhhhcccccccccccccccccccc----cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            456788999999999998643    222    46788999999999999875422    2333  346799999999998


Q ss_pred             cccc----ccccc-ccCcCCCCCCCcEEecCcccCcc
Q 039460          122 NGSV----VIKVF-WFDILDENGLPFLEQTANRLSLE  153 (182)
Q Consensus       122 ~g~~----p~~~~-~l~~l~~~~L~~l~l~~N~~~~~  153 (182)
                      +..-    ...+. ..+     +|+++++++|.+..+
T Consensus       286 ~~~~~~~l~~~l~~~~~-----~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         286 ELDAVRTLKTVIDEKMP-----DLLFLELNGNRFSEE  317 (344)
T ss_dssp             BHHHHHHHHHHHHHHCT-----TCCEEECTTSBSCTT
T ss_pred             ChHHHHHHHHHHHccCC-----CCCEEECCCCcCCCc
Confidence            7432    22221 233     799999999999743

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00015  Score=50.10  Aligned_cols=95  Identities=13%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             CCCCCCEEECcCC-ccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEcccccccccccccc
Q 039460           55 PFQQLESLDLIGN-NIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGSVVIKV  129 (182)
Q Consensus        55 ~l~~L~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  129 (182)
                      +.+.|++|+|+++ .++..--..+...+...+.|++|+|++|.+...    +...+...+.|+.|+|++|.++..--..+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3478889999874 454321000011356677888999998887532    22345556888999999888874322222


Q ss_pred             cc-cCcCCCCCCCcEEecCcccC
Q 039460          130 FW-FDILDENGLPFLEQTANRLS  151 (182)
Q Consensus       130 ~~-l~~l~~~~L~~l~l~~N~~~  151 (182)
                      .. +.  ...+|+.|++++|.+.
T Consensus        93 ~~aL~--~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTL--VTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTT--TTCCCSEEECCCCSSC
T ss_pred             HHHHH--hCCcCCEEECCCCcCC
Confidence            11 11  1237888888877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.38  E-value=0.00079  Score=46.29  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=59.9

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccc----
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGS----  124 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~----  124 (182)
                      +...+.|++|++++|.+...-...+...+...+.|++|+|++|.++..    +-..+...+.|+.|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            334578999999999987432211011244567899999999998743    233566778999999998875421    


Q ss_pred             ---ccccccccCcCCCCCCCcEEecCcc
Q 039460          125 ---VVIKVFWFDILDENGLPFLEQTANR  149 (182)
Q Consensus       125 ---~p~~~~~l~~l~~~~L~~l~l~~N~  149 (182)
                         +...+..-+     +|+.++++.+.
T Consensus       120 ~~~l~~~L~~n~-----sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENE-----SLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCS-----SCCEEECCCCC
T ss_pred             HHHHHHHHHhCC-----CccEeeCcCCC
Confidence               222233333     77788776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.48  E-value=0.01  Score=40.17  Aligned_cols=92  Identities=21%  Similarity=0.096  Sum_probs=52.2

Q ss_pred             CCCCCCEEECcC-CccccccCcccccccCCCCCCcEEEccCCcCCccc----chhccCCCCCCEEEcccccccccc----
Q 039460           55 PFQQLESLDLIG-NNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSI----FSSLGGLSSLRCLSLRSNRLNGSV----  125 (182)
Q Consensus        55 ~l~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~----p~~~~~l~~L~~L~L~~N~l~g~~----  125 (182)
                      ..+.|++|++++ +.++...-..+...+...++|++|++++|.++...    -..+...+.++.+++.+|.+....    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            346788888876 44532211100113556778888888888775432    223455678888888888775331    


Q ss_pred             cccccccCcCCCCCCCcEEe--cCcccC
Q 039460          126 VIKVFWFDILDENGLPFLEQ--TANRLS  151 (182)
Q Consensus       126 p~~~~~l~~l~~~~L~~l~l--~~N~~~  151 (182)
                      -..+...+     +|+.+++  ..|.+.
T Consensus        95 ~~~l~~~~-----~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          95 VEALQSNT-----SLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHGGGGCS-----SCCEEECCCCSSCCC
T ss_pred             HHHHHhCc-----cccEEeeccCCCcCc
Confidence            12233333     5665444  456665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.01  E-value=0.0052  Score=41.74  Aligned_cols=93  Identities=16%  Similarity=0.085  Sum_probs=60.8

Q ss_pred             ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEcc--cccccc---
Q 039460           53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLR--SNRLNG---  123 (182)
Q Consensus        53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~--~N~l~g---  123 (182)
                      +...++|++|++++|.++..--..+...+...++++.+++..+.+...    +-..+...++|+.++|+  .|.+..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            345689999999999986442111111345668899999999988643    33456778899986664  566642   


Q ss_pred             -cccccccccCcCCCCCCCcEEecCccc
Q 039460          124 -SVVIKVFWFDILDENGLPFLEQTANRL  150 (182)
Q Consensus       124 -~~p~~~~~l~~l~~~~L~~l~l~~N~~  150 (182)
                       .+...+...+     +|+.|++..+..
T Consensus       122 ~~La~~L~~n~-----~L~~L~l~~~~~  144 (166)
T d1io0a_         122 MEIANMLEKNT-----TLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHCS-----SCCEEECCCSSH
T ss_pred             HHHHHHHHhCC-----CcCEEeCcCCCC
Confidence             2333344444     788888876544