Citrus Sinensis ID: 039491

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------138
MNRIQATNELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQGKWEPNSVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGGLEDSQSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQSSLKSTSDEKLNELSVQFDDLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGPQLEPESIDSDAEGKTTVGFNSVKEADLSVLDEILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV
ccccccccccccEEEEccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHcccccccccccccccccccccccccccccccccEEcccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccccccccccccccccccEEEEEHHHHHHHHHccccccccccEEEEEccccccccccccccEEEEEEccccccEEEcccccccHHHHHHHHHHHccccEEEEEccccccccEEEEEEcccEEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEccccccccccccccEEEEEcEEEEccccccccccccHHHHcccccccccccEEEEEEEcccccccHHHHHHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccEEEEEEcccccccccEEEEEcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEccccccccc
cccEEEcccccEEEEEEcccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHcccccccHHHHcccccccccccEEEEEccccccEcccccccEcccEEEccHHHcccccccccccccccHHHcEEcccccccccccccccHHHHHHHcHHHccccHHHHHHHccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEcccEEcccccccEEEEEccEEEEEccccHHHcccccccccccccccccccccccccccHccHHHHHHccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHccEEEEcccEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHEEEEHHEEEEcccccccEEEEEEEEccccEEEEEEEcccHcHHHHHHHHHHHccccEEEEEccccccccEEEEEccccEEEEEccccccHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHccEEEEEEHHHHHccccccccEEEEEcEEcccccccEccccccHEEEcccccccccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccEEEEEEEccccccccccEEccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEccccccccccccEEEEEEEcccHEEEEEcEEEEccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccEEEEEEEEEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MNRIQATNELAFRvgfsghsghlrveplytvedrtdpikslpdfilppafpreTAESIKEHIEDKYlsmgldtnefspekvgrqwdfdwfemakvplepslaqsvvapvwevpfrrqtkqgkwepnsvdvselmlgaqdsgplprvagpakdfvrgsinsrpfrpggledsqslerilpdgasngEWVQEILkggpaqvvppsfkqgldlgelqaypclwnvykdqdqsslkstsdeKLNELSVQFDDLFKKAWEEDVAefekddwlpnrIKIMLYWrlhpfgnmqhkLKRKKVLFACGFLVYNYFSSyqscylgpqlepesidsdaegkttvgfnsvkeaDLSVLDEILsvksggttsilddgggqqqkEAWVVSGSTEAIADRFHELvpdlaldfpfeLDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTravytapiktisnqkyrdfsgkfdvglltgdvslrpeasCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLsatvpntvEFADWIgrtkqkkirvtgttkrpvplehclyysgefykvceneafipqGWKAAKDAYKRknlsaasgatgsyagassprdgaraqkrehpnrgkqnkhSVVGIknsggsqnnwglrrSEVSIWLTLINKLSKKSLLPVVIFCFSknhcdkladgmsgidltssseksEIRVFCDKAFSrlkgsdrnlpqIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTEtfamgvnaparTVVFDnlrkfdgrefrqllpGEYTQMAGragrrgldkiGTVVVLCrdeipgesdlkHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAefhsqkklpEQQQLLMRklaqppktiecikgepaIEEYYDMYYEAEKYNNQITEAFMQSAHQFlmpgrvlfvksqtgqdHLLGAVVKAPSANNKEYIVMLLkpdlpsasetsldkksgdfsegyfvipkskrgleeeycgsvshrkgsgviniklpyhgaaagvsyevrgidkKELLCICNckikidqvglledvssaaFSKTVQQLLVLKSdekkypqaldpvkdlklkDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVacemnsgeelicteclfenqlddlepEEAVAIMSAFVFqqrntsepsltpklSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWakgtpfadiceltdvpeglIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV
mnriqatnelafrvgfsghsghlrVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPfrrqtkqgkwepnsVDVSELMLGaqdsgplprVAGPAKDFVRgsinsrpfrpggledsqSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQSSLKSTSDEKLNELSVQFDDLFKKAWEEDVaefekddwlpnrIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGPQLEPESIDSDAEGKTTVGFNSVKEADLSVLDEILSVKSGGttsilddgggqqQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTapiktisnqkyrdFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFadwigrtkqkkirvtgttkrpvpleHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSaasgatgsyagassprDGARAQkrehpnrgkqnkhsvvgiknsggsqnnwglrRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIdltsssekseIRVFCDKAFsrlkgsdrnlpqIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTEtfamgvnapartvVFDNLRKFDGREFRQLLPGEYTQmagragrrgldkiGTVVVLCRdeipgesdlkhiivgsatrlesqFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMrklaqppktiecikgePAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASEtsldkksgdfsegyfvipkskrglEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLvlksdekkypqaldpvkdlklkdmNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVfqqrntsepsltpklsvAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGtpfadiceltdvpegLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV
MNRIQATNELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQGKWEPNSVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGGLEDSQSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQSSLKSTSDEKLNELSVQFDDLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGPQLEPESIDSDAEGKTTVGFNSVKEADLSVLDEILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLsaasgatgsyagassPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV
*********LAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAF**********HIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRR*********************************************************************EWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYK*****************LSVQFDDLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGP*****************GFNSVKEADLSVLDEILSVKS*****I**********EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDA*******************************************************NWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGID********EIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFA***********************KTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLK********************GYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEH******************************DFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQ*************SVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYIT**
********ELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAF*****ESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQGKWEPNS***************************RGSINSRPFRPGGLED********************ILKGGPAQVVPP***************************************************************************************************************************************************************************VVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYK**************************************************************SIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAE***********QLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKID*****************QQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNT*******EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQ*************VAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITG*
MNRIQATNELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQGKWEPNSVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGGLEDSQSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKD**********DEKLNELSVQFDDLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGPQLEPESIDSDAEGKTTVGFNSVKEADLSVLDEILSVKSGGTTSILD**************GSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLS***********************************SVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV
*NRIQATNELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQGKWEPNSVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGGLEDSQSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQ************LNELSVQFDDLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSS***********************************************************QQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRK***********************************************************VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNRIQATNELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQGKWEPNSVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGGLEDSQSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQSSLKSTSDEKLNELSVQFDDLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGPQLEPESIDSDAEGKTTVGFNSVKEADLSVLDEILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1379 2.2.26 [Sep-21-2011]
O598011213 Putative ATP-dependent RN yes no 0.685 0.779 0.443 0.0
Q154771246 Helicase SKI2W OS=Homo sa yes no 0.696 0.770 0.439 0.0
P352071287 Antiviral helicase SKI2 O yes no 0.697 0.747 0.418 0.0
P470471073 ATP-dependent RNA helicas no no 0.658 0.846 0.367 1e-171
P422851042 Superkiller viralicidic a no no 0.649 0.858 0.369 1e-168
Q9CZU31040 Superkiller viralicidic a no no 0.649 0.860 0.364 1e-167
O142321117 ATP-dependent RNA helicas no no 0.656 0.810 0.365 1e-164
Q232231026 mRNA transport homolog 4 no no 0.380 0.511 0.415 1e-121
O137991030 Uncharacterized helicase no no 0.379 0.507 0.414 1e-119
B9DFG31171 DEAD-box ATP-dependent RN no no 0.332 0.391 0.377 4e-76
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1 Back     alignment and function desciption
 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1030 (44%), Positives = 630/1030 (61%), Gaps = 85/1030 (8%)

Query: 367  QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSA 426
            +Q   A VV  S  A  + F +LVP++ALDFPFELDNFQKEAIY+LE GDSVFVAAHTSA
Sbjct: 249  KQPDYAHVVDSS--APIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSA 306

Query: 427  GKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCL 485
            GKTVVAEYA ALA KH T+A+YT+PIK +SNQK+RDF  KF DVG+LTGDV + PE SCL
Sbjct: 307  GKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCL 366

Query: 486  IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSAT 545
            +MTTEILRSMLYRGAD+IRD+E+VIFDEVHYVND+ERGVVWEEVIIMLP H+ ++LLSAT
Sbjct: 367  LMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSAT 426

Query: 546  VPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEA-FIPQGWKAAK 604
            VPNT EFA W+GRTK+K I V  T KRPVPLEH L+     +K+ +    F+  G+K+A 
Sbjct: 427  VPNTKEFASWVGRTKKKNIYVISTLKRPVPLEHYLWVKQNMFKIVDQHGRFLMDGYKSAN 486

Query: 605  DAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWG 664
            DA K+ +    +    + A       G   Q      RG                     
Sbjct: 487  DALKKPDKPVIAKDNKNSARGRGAARGRGVQTNMMRGRGSAK-----------------S 529

Query: 665  LRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD 724
            + R + + W+ LI  L K++LLPV++F FSK  C++  D ++  DL +  EKSE+ V  +
Sbjct: 530  VERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIE 589

Query: 725  KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETF 784
            KA +RLK  DR LPQI R++ +L RG+A+HH GLLPI+KE++E+LF RG+VKVLF+TETF
Sbjct: 590  KAVARLKKEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETF 649

Query: 785  AMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPG 844
            AMGVN PA++VVF   +K DGR FR LLPGEYTQ +GRAGRRGLD  GTV++L R E+P 
Sbjct: 650  AMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPD 709

Query: 845  ESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQL 904
             + L+H+I+G +++L SQFRLTY MIL+LLRVE L++EDM+KRSF+E  +Q  +P+ ++ 
Sbjct: 710  TASLRHMIMGPSSKLISQFRLTYNMILNLLRVETLRIEDMIKRSFSENVNQTLVPQHEEK 769

Query: 905  LM---RKLAQPPKTI---------ECIKGEPAIEEYY-DMYYEAEKYNNQITEAFMQSAH 951
            +     KL+   K +          C+    + +EY   M++ A      IT A   +  
Sbjct: 770  IKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRA------ITTA---NGK 820

Query: 952  QFLMPGRVLFVKS---QTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSG 1008
            +    GRV+  +          LLG  ++  +A++    V  L P       + L   + 
Sbjct: 821  RIFKDGRVIVFQQLDFTRTVGVLLGTSIRT-NASDCTLEVAYLNPQNNLKRPSDLLAFAD 879

Query: 1009 DFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLC 1068
             F++ Y           +      S++   G+IN+                GI++     
Sbjct: 880  AFNDVY-----------DNAIFDESNQFKYGLINLS---------------GIER----- 908

Query: 1069 ICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQAL-DPVKDLKLKDMNLVEA 1127
            +CN  ++ID  G + D    AF K  +Q   +    KK+   L + V   K++D    EA
Sbjct: 909  VCNTILRIDSGG-IRDRRGGAFRKLSEQFASI----KKFSDLLFEEVNWSKVRDFEFCEA 963

Query: 1128 YYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGR 1187
            + K   L  K++ N          H  L  +    +  ++ L   +SD+ L+ +PD++ R
Sbjct: 964  FEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQR 1023

Query: 1188 IDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVF 1247
            I VL+E+G IDA+  V +KGRVACE+NS  EL+ TE + EN L D   EE +A++SAFVF
Sbjct: 1024 IKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEETIALLSAFVF 1083

Query: 1248 QQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKV-QIDPEEYARDNLKFGLVEVVYE 1306
             ++   EP+++P L   KE + + A ++ ++Q H++V   +         +FGL+EV YE
Sbjct: 1084 DEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGLMEVCYE 1143

Query: 1307 WAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKR 1366
            WA+G  F  I +LTDV EG IVRTI+RLDE  RE R AA ++G+S++Y KME   N I+R
Sbjct: 1144 WARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEECQNLIRR 1203

Query: 1367 DIVFAASLYI 1376
            +IVF  SLY+
Sbjct: 1204 NIVFCPSLYM 1213
RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3 Back     alignment and function description
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2 Back     alignment and function description
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 Back     alignment and function description
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3 Back     alignment and function description
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1 Back     alignment and function description
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1 Back     alignment and function description
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 Back     alignment and function description
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1 Back     alignment and function description
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1379
3594785711379 PREDICTED: helicase SKI2W-like [Vitis vi 0.979 0.979 0.757 0.0
2555588321335 helicase, putative [Ricinus communis] gi 0.949 0.981 0.744 0.0
3565695661342 PREDICTED: helicase SKI2W-like [Glycine 0.958 0.985 0.716 0.0
4494551621352 PREDICTED: helicase SKI2W-like [Cucumis 0.963 0.982 0.724 0.0
2978193001369 hypothetical protein ARALYDRAFT_323324 [ 0.965 0.972 0.703 0.0
2402555271347 antiviral helicase SKI2 [Arabidopsis tha 0.964 0.987 0.704 0.0
65225771347 putative helicase [Arabidopsis thaliana] 0.958 0.981 0.687 0.0
2226222171452 hypothetical protein OsJ_05464 [Oryza sa 0.970 0.921 0.635 0.0
4139356611373 hypothetical protein ZEAMMB73_307219 [Ze 0.966 0.970 0.634 0.0
2977459571082 unnamed protein product [Vitis vinifera] 0.722 0.921 0.797 0.0
>gi|359478571|ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2115 bits (5481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1066/1407 (75%), Positives = 1185/1407 (84%), Gaps = 56/1407 (3%)

Query: 1    MNRIQATNELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKE 60
            MNRIQ  ++ +FRVGFSGHSGHLR+EPL  VE R +P+ SLPDFI PPAF RET E+IKE
Sbjct: 1    MNRIQVGHDASFRVGFSGHSGHLRLEPLPPVE-RPNPLSSLPDFISPPAFARETPETIKE 59

Query: 61   HIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQ 120
            +IED YL   LD +EFSPEKVGRQWDFDWF+ AKVPLEPSL +SVV   WE+PFRR  K+
Sbjct: 60   YIEDTYLLPRLDPDEFSPEKVGRQWDFDWFDRAKVPLEPSLPRSVVVQKWELPFRRSKKE 119

Query: 121  ---GKWEPNS--VDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGGLEDSQSLE 175
               GKWEP S  V+VS+LM+GAQD+GPLPR+ GPAKDF+RGSIN+RPFRPGGL+DSQSL+
Sbjct: 120  SASGKWEPISEEVEVSDLMVGAQDTGPLPRMVGPAKDFIRGSINNRPFRPGGLDDSQSLD 179

Query: 176  RILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQSSLKSTS 235
            RI P GASNGEWVQE+L GGPA VVPPSFKQGLDLG+L+AY   W VYK Q  S+LK  S
Sbjct: 180  RIPPLGASNGEWVQEVLNGGPALVVPPSFKQGLDLGDLKAYSHSWKVYKGQ--SALKGKS 237

Query: 236  DEKLNELSVQFDDLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVL 295
            +E LN+LS+QFDDL KKAWEED     K+D +     I  ++                 +
Sbjct: 238  EENLNKLSIQFDDLLKKAWEEDDVAESKEDGI-----ICTFY-----------------I 275

Query: 296  FACGFLVYNYFSSY-QSCYLGPQLEPESIDSDAEGKTTVGFNSVKEADLSVLDEILSVKS 354
             A G  V     S+ +SC+     E +SI  + +       ++V + + SVLDEILSV+S
Sbjct: 276  LALGTNVCKVTDSWAKSCH---SPESDSIKLEVQLDEVEASSNVGDLESSVLDEILSVES 332

Query: 355  GGTTSI--LDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL 412
            G    +    D GG+Q+KEAW VSG  E IAD FHELVPD+ALDFPFELD FQKEAIYYL
Sbjct: 333  GSKPGLDGTSDDGGRQKKEAWAVSGGNEGIADHFHELVPDMALDFPFELDTFQKEAIYYL 392

Query: 413  ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLL 472
            E GDSVFVAAHTSAGKTVVAEYAFALA+KHCTRAVYTAPIKTISNQKYRDF GKFDVGLL
Sbjct: 393  EKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLL 452

Query: 473  TGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM 532
            TGDVSLRPEASCLIMTTEILRSMLY+GADIIRDIEWVIFDEVHYVND+ERGVVWEEVIIM
Sbjct: 453  TGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIM 512

Query: 533  LPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCEN 592
            LPRHINIVLLSATVPNT+EFADWIGRTKQK+IRVTGTTKRPVPLEHC++YSGE YK+CE+
Sbjct: 513  LPRHINIVLLSATVPNTIEFADWIGRTKQKQIRVTGTTKRPVPLEHCIFYSGELYKICES 572

Query: 593  EAFIPQGWKAAKDAYKRKNLSAASGATGSYAGA-SSPRDGARAQKREHPNRGKQNKHSVV 651
            E F+PQG K AKD +K+KNLS   G +G+Y+G  S+  DGARAQ+RE+P RGKQNK+S  
Sbjct: 573  ETFLPQGLKTAKDVHKKKNLSTGGGGSGTYSGPPSAAHDGARAQRRENPGRGKQNKYSGS 632

Query: 652  -----------GIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDK 700
                       G +NS GSQ+NWG RRSE S+WL LINKLSKKSLLPVVIFCFSKN CD 
Sbjct: 633  QKVGNFYGTGGGNQNSSGSQSNWGSRRSEASLWLLLINKLSKKSLLPVVIFCFSKNRCDI 692

Query: 701  LADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLP 760
             AD M+GIDLTSSSEK EI VFC++AFSRLKGSDRNLPQ++RVQSLLRRGI +HHAGLLP
Sbjct: 693  SADKMTGIDLTSSSEKHEIHVFCERAFSRLKGSDRNLPQVIRVQSLLRRGIGVHHAGLLP 752

Query: 761  IVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMA 820
            IVKEV+EMLFCRGVVKVLFSTETFAMGVNAPARTVVFD+LRKFDGREFRQLLPGEYTQMA
Sbjct: 753  IVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDSLRKFDGREFRQLLPGEYTQMA 812

Query: 821  GRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELK 880
            GRAGRRGLDKIGTVVV+CRDEIP E DLKH+IVGSATRL SQFRLTYIMILHLLRVEELK
Sbjct: 813  GRAGRRGLDKIGTVVVMCRDEIPDERDLKHVIVGSATRLASQFRLTYIMILHLLRVEELK 872

Query: 881  VEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNN 940
            VEDMLKRSFAEFH+QKKLPE+QQLLMRKLAQP KTIECIKGEP IEEYYDMY EAE+++N
Sbjct: 873  VEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQPTKTIECIKGEPTIEEYYDMYTEAEQHSN 932

Query: 941  QITEAFMQS--AHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSA 998
            QI E  MQS  A QFL  GRV+ VKSQ+ QDHL+G VVKAPSA++K+YIV++LKP LPS 
Sbjct: 933  QILETVMQSSAAQQFLTLGRVVVVKSQSVQDHLIGVVVKAPSASSKQYIVLVLKPHLPST 992

Query: 999  SETS------LDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAA 1052
             +T        DKKSG F EG+F++PK+KR LE++Y  S + RK SG INIKLPYHGAAA
Sbjct: 993  LQTPSESGNLQDKKSGAFPEGHFILPKAKRALEDDYYTSTTSRKASGTINIKLPYHGAAA 1052

Query: 1053 GVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALD 1112
            GVSYEVRGID KE LCIC  KIKID VGLLED ++AA+SKTVQQLL LKS   KYP ALD
Sbjct: 1053 GVSYEVRGIDNKEFLCICIHKIKIDPVGLLEDANNAAYSKTVQQLLELKSKGHKYPPALD 1112

Query: 1113 PVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQ 1172
            P+KDLKLKDM LVE YYKW  LL+KMA NKCH C+KLEEH+KL KE KRHK+EVN L+FQ
Sbjct: 1113 PLKDLKLKDMTLVETYYKWNSLLQKMADNKCHECVKLEEHIKLAKELKRHKEEVNALRFQ 1172

Query: 1173 MSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDD 1232
            MSDEALQQMPDFQGRIDVL+EIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDD
Sbjct: 1173 MSDEALQQMPDFQGRIDVLQEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDD 1232

Query: 1233 LEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYA 1292
            LEPEEAVA+MSA VFQQ+NTSEPSLTPKLS AK+RLYNTAIRLGELQA FK+QI PEEYA
Sbjct: 1233 LEPEEAVALMSALVFQQKNTSEPSLTPKLSQAKQRLYNTAIRLGELQAQFKLQISPEEYA 1292

Query: 1293 RDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSA 1352
            +DNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSA
Sbjct: 1293 QDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSA 1352

Query: 1353 LYKKMETASNAIKRDIVFAASLYITGV 1379
            L+KKME ASNAIKRDIVFAASLYITG+
Sbjct: 1353 LHKKMEAASNAIKRDIVFAASLYITGL 1379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558832|ref|XP_002520439.1| helicase, putative [Ricinus communis] gi|223540281|gb|EEF41852.1| helicase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356569566|ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max] Back     alignment and taxonomy information
>gi|449455162|ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297819300|ref|XP_002877533.1| hypothetical protein ARALYDRAFT_323324 [Arabidopsis lyrata subsp. lyrata] gi|297323371|gb|EFH53792.1| hypothetical protein ARALYDRAFT_323324 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240255527|ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana] gi|332644703|gb|AEE78224.1| antiviral helicase SKI2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6522577|emb|CAB61942.1| putative helicase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222622217|gb|EEE56349.1| hypothetical protein OsJ_05464 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|413935661|gb|AFW70212.1| hypothetical protein ZEAMMB73_307219 [Zea mays] Back     alignment and taxonomy information
>gi|297745957|emb|CBI16013.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1379
TAIR|locus:20755661347 AT3G46960 [Arabidopsis thalian 0.768 0.786 0.745 0.0
DICTYBASE|DDB_G02772111378 DDB_G0277211 "superkiller vira 0.509 0.509 0.419 4.1e-228
UNIPROTKB|Q154771246 SKIV2L "Helicase SKI2W" [Homo 0.494 0.547 0.418 1.9e-219
RGD|13030591241 Skiv2l "superkiller viralicidi 0.496 0.551 0.421 2.4e-219
UNIPROTKB|F1LP391206 Skiv2l "Protein Skiv2l" [Rattu 0.496 0.567 0.421 5e-219
POMBASE|SPCC550.03c1213 SPCC550.03c "Ski complex RNA h 0.369 0.419 0.564 1.3e-218
UNIPROTKB|F1RQW41246 SKIV2L "Uncharacterized protei 0.514 0.569 0.409 1.3e-218
UNIPROTKB|E1BMS01246 LOC100139548 "Uncharacterized 0.496 0.549 0.417 1.7e-218
ASPGD|ASPL00000049851293 AN6007 [Emericella nidulans (t 0.210 0.224 0.590 5.2e-218
UNIPROTKB|E2RSD61246 SKIV2L "Uncharacterized protei 0.496 0.549 0.414 9.3e-216
TAIR|locus:2075566 AT3G46960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4099 (1448.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 801/1075 (74%), Positives = 906/1075 (84%)

Query:   319 EPESIDSDAEGKTTVGFNSVK---EADLSVLDEILS-VKSG--GTTSILDDGGGQQQKEA 372
             E    +++ + K ++  N V    E D++VLDEILS  K+      ++      Q +KE 
Sbjct:   274 ESPKAEAEPDAKASIS-NEVSKGLETDVTVLDEILSSAKTAIMSEEAVTGSSDKQLRKEG 332

Query:   373 WVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432
             W   G ++ IADRF+ELVPD+A++FPFELDNFQKEAI  LE G+SVFVAAHTSAGKTVVA
Sbjct:   333 WATKGDSQDIADRFYELVPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVA 392

Query:   433 EYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492
             EYAFALATKHCTRAVYTAPIKTISNQKYRDF GKFDVGLLTGDVS+RPEASCLIMTTEIL
Sbjct:   393 EYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEIL 452

Query:   493 RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEF 552
             RSMLYRGADIIRDIEWVIFDEVHYVND+ERGVVWEEVIIMLPRHIN VLLSATVPNT EF
Sbjct:   453 RSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEF 512

Query:   553 ADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNL 612
             ADWIGRTKQK+IRVTGTTKRPVPLEHCL+YSGE YKVCENE F+ +G K AKD+ K+KN 
Sbjct:   513 ADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNS 572

Query:   613 XXXXXXXXXXXXXXXPRDGARAQKREHPNRGKQNKHSVV---GIKN-SGGSQNNWGLRRS 668
                             +DG+++QK E  +RGKQNKHS V   G  + SG SQNN   RRS
Sbjct:   573 NAVSVAPKQQMGSSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRS 632

Query:   669 EVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFS 728
               S WL LINKLSK SLLPVV+FCFSKN+CD+ AD ++G DLTSSSEKSEIRVFCDKAFS
Sbjct:   633 AASNWLLLINKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFS 692

Query:   729 RLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGV 788
             RLKGSDRNLPQ++R+QSLL RGI +HHAGLLPIVKEV+EMLFCRGV+KVLFSTETFAMGV
Sbjct:   693 RLKGSDRNLPQVLRLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGV 752

Query:   789 NAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDL 848
             NAPARTVVFD LRKFDG+EFRQLLPGEYTQMAGRAGRRGLDK GTVVV+CRDE+P ESDL
Sbjct:   753 NAPARTVVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDL 812

Query:   849 KHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRK 908
             + +IVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFH+QKKLPE+QQLLM K
Sbjct:   813 RRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMIK 872

Query:   909 LAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQS--AHQFLMPGRVLFVKSQT 966
              + P K IECIKGEPAIE+YYDMY EA +YNN+++EA MQS  A  FL+ GRV+ +KS  
Sbjct:   873 RSLPTKHIECIKGEPAIEDYYDMYMEANEYNNKMSEAVMQSPYAQSFLVQGRVVVMKSGM 932

Query:   967 GQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASET--SLDKKSGDFSEGYFVIPKSKRGL 1024
             G D+LLG V+K PS  N++Y+V+++K ++P   +   S+ KKS D S+GYF+ PKSKRG 
Sbjct:   933 GIDNLLGIVLKGPSNTNRQYVVLVIKSEIPPPEKNMVSIGKKSSDPSQGYFIAPKSKRGF 992

Query:  1025 EEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLED 1084
             EEE+    S RKG  VI I+LPYHG AAGV YEV+G D KE LCIC+ KIKIDQV LLED
Sbjct:   993 EEEFYTKPSSRKGPVVIKIELPYHGVAAGVGYEVKGFDNKEFLCICDSKIKIDQVRLLED 1052

Query:  1085 VSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCH 1144
              + AAFS+TVQQLL LKSD  K+P ALDPVKDLKLKD  LVE YYKW  LL+KM+ NKCH
Sbjct:  1053 GNKAAFSQTVQQLLDLKSDGNKFPPALDPVKDLKLKDAELVETYYKWTNLLQKMSMNKCH 1112

Query:  1145 GCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQ 1204
             GC+KLEEHMKL +E K+HK ++  L+FQMSDEAL QMP FQGRIDVLK IGCID DLVVQ
Sbjct:  1113 GCVKLEEHMKLAREIKKHKTDLKDLEFQMSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQ 1172

Query:  1205 IKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVA 1264
             IKGRVACEMNSGEELICT CLFENQ ++LEPEEAVAIMSAFVFQQ+NTS P+LTPKL+ A
Sbjct:  1173 IKGRVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQKNTSAPTLTPKLAKA 1232

Query:  1265 KERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPE 1324
             K+RLY+TAIRLGELQA + +QIDPEEYA++NLKFGLVEVVYEWAKGTPFA+ICELTDVPE
Sbjct:  1233 KQRLYDTAIRLGELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPE 1292

Query:  1325 GLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYITGV 1379
             GLIVRTIVRLDETCREF+NAAAIMGNSAL+KKM+ ASNAIKRDIVFAASLY+TGV
Sbjct:  1293 GLIVRTIVRLDETCREFKNAAAIMGNSALHKKMDAASNAIKRDIVFAASLYVTGV 1347
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0006813 "potassium ion transport" evidence=IMP
GO:0035864 "response to potassium ion" evidence=IMP
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
DICTYBASE|DDB_G0277211 DDB_G0277211 "superkiller viralicidic activity 2-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q15477 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1303059 Skiv2l "superkiller viralicidic activity 2-like (S. cerevisiae )" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LP39 Skiv2l "Protein Skiv2l" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPCC550.03c SPCC550.03c "Ski complex RNA helicase Ski2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQW4 SKIV2L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BMS0 LOC100139548 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ASPGD|ASPL0000004985 AN6007 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSD6 SKIV2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.824
3rd Layer3.6.40.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1379
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 0.0
pfam08148178 pfam08148, DSHCT, DSHCT (NUC185) domain 2e-72
COG1204766 COG1204, COG1204, Superfamily II helicase [General 8e-32
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 6e-30
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-25
COG1204766 COG1204, COG1204, Superfamily II helicase [General 4e-22
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 1e-20
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 1e-19
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-18
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 3e-18
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 1e-16
pfam13234266 pfam13234, rRNA_proc-arch, rRNA-processing arch do 8e-14
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 1e-13
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 5e-13
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 1e-12
smart0049082 smart00490, HELICc, helicase superfamily c-termina 4e-12
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 5e-10
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 6e-10
TIGR04121803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 2e-08
COG1201814 COG1201, Lhr, Lhr-like helicases [General function 9e-08
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-07
COG1205851 COG1205, COG1205, Distinct helicase family with a 2e-07
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 1e-04
cd00268203 cd00268, DEADc, DEAD-box helicases 5e-04
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 7e-04
COG0514590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 0.001
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 0.002
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 0.003
PRK11057607 PRK11057, PRK11057, ATP-dependent DNA helicase Rec 0.004
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  704 bits (1820), Expect = 0.0
 Identities = 378/1026 (36%), Positives = 516/1026 (50%), Gaps = 132/1026 (12%)

Query: 390  VPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449
            +   A ++PFELD FQ+EAI  LE G+SV V A TS+GKTVVAEYA ALA +   R +YT
Sbjct: 109  LAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYT 168

Query: 450  APIKTISNQKYRDFSGKFD-----VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIR 504
            +PIK +SNQKYRD   KF      VGL+TGDVS+ P+A CL+MTTEILR+MLYRG++ +R
Sbjct: 169  SPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLR 228

Query: 505  DIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKI 564
            DIEWV+FDEVHY+ D ERGVVWEEVII+LP H+  V LSATVPN  EFA+WI R   + I
Sbjct: 229  DIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPI 288

Query: 565  RVTGTTKRPVPLEHCLYYSGEFYKVC-ENEAFIPQGWKAAKDAYKRKNLSAASGATGSYA 623
             V  T  RPVPLEH +Y     + +  E + F  + + +A  +                 
Sbjct: 289  HVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF-----------SE 337

Query: 624  GASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKK 683
                  DG       +  R K  + S  G              R E+      +NKL K 
Sbjct: 338  KVRETDDGD---VGRYARRTKALRGSAKGPA-----------GRPEI------VNKLDKD 377

Query: 684  SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKS-EIRVFCDKAFSRLKGSDRNLP-QIV 741
            +LLP ++F FS+  C++ A  +S +DL  + EK   IR   D A   L   DR LP QI+
Sbjct: 378  NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQIL 437

Query: 742  RVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLR 801
             + +LL RGIA+HHAGLLP +KE++E LF  G+VKV+F+TETFA+G+N PARTVVF +L 
Sbjct: 438  EISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497

Query: 802  KFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLES 861
            KFDG   R L PGEYTQM+GRAGRRGLD +GTV+V+        S+   +  G    L S
Sbjct: 498  KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRS 557

Query: 862  QFRLTYIMILHLLRVEEL-KVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPK---TIE 917
            QFRL+Y MIL+LLRVE L   ED+L+RSFA+F + + LPE    ++ KL +  K    I 
Sbjct: 558  QFRLSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPE----IVEKLERLEKELNDIA 613

Query: 918  CI---KGEPAIEEYYDMYYEAEKYNNQITEAFMQSAHQF--------------LMPGRVL 960
                   E    +    Y +  K  N+                          L  GR+L
Sbjct: 614  TELFGTDENDAPKLSLDYEKLRKKLNEEMRLQAAGLRALRKGRVVQIKDGLAALFWGRLL 673

Query: 961  FVKSQTGQ---DHLLGAVVKAPSANNKEYIVMLLKPDLPSASET-SLDKKSGDFSEGYFV 1016
             +  +      DH L   V      +  +   L+K       E+  L K     S  Y  
Sbjct: 674  KLTKRYTTKLTDHELYLAVLVEPNADFSFPRPLVKAMPHMNRESRWLVKILFRISFVY-- 731

Query: 1017 IPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAG--VSYEVRGIDKKELLCICNCKI 1074
                           + +      + + +P    +    +        +     I     
Sbjct: 732  ---------------LLNATEILELILTMPRRLLSRQGKLRR-----GEPSNEAIAA--G 769

Query: 1075 KIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGL 1134
                  +LE+V        V +L V     +     L    +  L + +  E   +    
Sbjct: 770  LDGNEKILENVVEMKIQ--VPELTVSLLKLRFGRYHL---SENPLMNFDGAERLIE---- 820

Query: 1135 LRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEI 1194
                         +L     L  E +     +  L F    + LQ++    G I+    +
Sbjct: 821  ------------NELLLS-DLQAEIEDLSSSIEALSFLDDYKTLQEVLKKLGFIEDNAVV 867

Query: 1195 GCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQR---- 1250
                      IKGRVA E++S +EL+ TE +F  + +DLEPEE  A++SAFVF+++    
Sbjct: 868  ---------LIKGRVAAEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDG 918

Query: 1251 NTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKG 1310
                P +TP L  A  RL   A +L + Q   +++I PE    ++   GL+EVVYEWA+G
Sbjct: 919  TAEAPEITPALRDALLRLLELARKLNKDQNSSQIEIYPEL---NDFSVGLMEVVYEWARG 975

Query: 1311 TPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVF 1370
              FADIC LT + EG  VR   RL E  R+ R AA+++GN  L +K   A   I+RDIVF
Sbjct: 976  LSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKAYRAIQEIRRDIVF 1035

Query: 1371 AASLYI 1376
              SLY+
Sbjct: 1036 VDSLYL 1041

Length = 1041
>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|221998 pfam13234, rRNA_proc-arch, rRNA-processing arch domain Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1379
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
PF08148180 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PTZ00110545 helicase; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
PRK13767876 ATP-dependent helicase; Provisional 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
COG1201814 Lhr Lhr-like helicases [General function predictio 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 100.0
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
KOG4284980 consensus DEAD box protein [Transcription] 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
PHA02558501 uvsW UvsW helicase; Provisional 99.98
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.98
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.98
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.97
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.97
PF13234268 rRNA_proc-arch: rRNA-processing arch domain; PDB: 99.97
PHA02653675 RNA helicase NPH-II; Provisional 99.97
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.97
PRK13766773 Hef nuclease; Provisional 99.97
COG1205851 Distinct helicase family with a unique C-terminal 99.97
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.96
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.96
KOG0354746 consensus DEAD-box like helicase [General function 99.96
PRK09401 1176 reverse gyrase; Reviewed 99.96
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.96
PRK14701 1638 reverse gyrase; Provisional 99.96
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.96
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.95
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.95
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.95
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.94
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.94
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.94
PRK05580679 primosome assembly protein PriA; Validated 99.93
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.93
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.93
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.93
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.93
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 99.92
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.92
PRK09694878 helicase Cas3; Provisional 99.92
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.92
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.92
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.91
PRK04914956 ATP-dependent helicase HepA; Validated 99.91
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.91
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.9
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.89
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.89
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.88
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.85
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.84
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.84
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.83
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.81
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.81
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 99.81
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.81
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.78
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.77
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.73
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.73
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.72
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.72
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.71
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.69
COG4096875 HsdR Type I site-specific restriction-modification 99.68
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.68
smart00487201 DEXDc DEAD-like helicases superfamily. 99.68
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.68
PRK05298652 excinuclease ABC subunit B; Provisional 99.65
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.61
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.58
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.57
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.54
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.54
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.53
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.51
KOG1123776 consensus RNA polymerase II transcription initiati 99.5
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.47
COG4889 1518 Predicted helicase [General function prediction on 99.45
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.44
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.42
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.42
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.42
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.36
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.31
KOG0387923 consensus Transcription-coupled repair protein CSB 99.28
KOG03841373 consensus Chromodomain-helicase DNA-binding protei 99.25
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.23
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.22
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.2
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.2
PRK14873665 primosome assembly protein PriA; Provisional 99.19
smart0049082 HELICc helicase superfamily c-terminal domain. 99.15
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.15
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.1
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.07
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.03
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.95
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 98.92
KOG09211282 consensus Dosage compensation complex, subunit MLE 98.85
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 98.83
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 98.71
PF02399824 Herpes_ori_bp: Origin of replication binding prote 98.7
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.68
KOG1002791 consensus Nucleotide excision repair protein RAD16 98.6
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.4
KOG4439901 consensus RNA polymerase II transcription terminat 98.17
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.15
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.14
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.14
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.14
COG0610962 Type I site-specific restriction-modification syst 98.08
PRK15483986 type III restriction-modification system StyLTI en 98.02
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.01
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 97.99
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.79
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.75
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.69
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.67
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 97.51
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 97.49
KOG1803649 consensus DNA helicase [Replication, recombination 97.49
PRK10536262 hypothetical protein; Provisional 97.49
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.47
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.46
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.41
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.27
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.23
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 97.21
PF1324576 AAA_19: Part of AAA domain 97.19
PRK13889988 conjugal transfer relaxase TraA; Provisional 97.17
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.15
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 97.14
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.09
COG3421812 Uncharacterized protein conserved in bacteria [Fun 97.06
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.91
smart00382148 AAA ATPases associated with a variety of cellular 96.85
PRK138261102 Dtr system oriT relaxase; Provisional 96.84
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.83
PRK06526254 transposase; Provisional 96.71
PRK08181269 transposase; Validated 96.7
PRK04296190 thymidine kinase; Provisional 96.61
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.45
PHA02533534 17 large terminase protein; Provisional 96.39
TIGR00376637 DNA helicase, putative. The gene product may repre 96.35
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.32
KOG2340698 consensus Uncharacterized conserved protein [Funct 96.29
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.13
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 96.12
PRK14974336 cell division protein FtsY; Provisional 95.96
KOG10161387 consensus Predicted DNA helicase, DEAD-box superfa 95.62
PRK07952244 DNA replication protein DnaC; Validated 95.54
PRK08116268 hypothetical protein; Validated 95.47
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 95.37
PRK08727233 hypothetical protein; Validated 95.25
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.23
PRK08903227 DnaA regulatory inactivator Hda; Validated 95.21
COG3587985 Restriction endonuclease [Defense mechanisms] 95.16
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.15
PRK08084235 DNA replication initiation factor; Provisional 95.12
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 95.12
PRK09183259 transposase/IS protein; Provisional 95.11
PRK05642234 DNA replication initiation factor; Validated 95.09
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 94.97
PHA03333752 putative ATPase subunit of terminase; Provisional 94.94
PRK06893229 DNA replication initiation factor; Validated 94.9
PRK12402337 replication factor C small subunit 2; Reviewed 94.78
PRK12377248 putative replication protein; Provisional 94.77
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 94.7
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 94.63
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 94.59
PRK06921266 hypothetical protein; Provisional 94.55
COG1484254 DnaC DNA replication protein [DNA replication, rec 94.53
PHA00729226 NTP-binding motif containing protein 94.51
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 94.5
PRK04195482 replication factor C large subunit; Provisional 94.49
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 94.43
smart00492141 HELICc3 helicase superfamily c-terminal domain. 94.41
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 94.4
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 94.38
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 94.35
PHA03368738 DNA packaging terminase subunit 1; Provisional 94.35
PRK00149450 dnaA chromosomal replication initiation protein; R 94.32
PRK00411394 cdc6 cell division control protein 6; Reviewed 94.3
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.28
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 94.22
cd01124187 KaiC KaiC is a circadian clock protein primarily f 94.21
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 94.2
PRK11054684 helD DNA helicase IV; Provisional 94.2
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 94.15
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 94.12
PTZ001121164 origin recognition complex 1 protein; Provisional 94.12
TIGR00362405 DnaA chromosomal replication initiator protein Dna 94.03
TIGR027601960 TraI_TIGR conjugative transfer relaxase protein Tr 94.01
KOG1131755 consensus RNA polymerase II transcription initiati 93.9
KOG03911958 consensus SNF2 family DNA-dependent ATPase [Genera 93.89
PRK12422445 chromosomal replication initiation protein; Provis 93.84
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 93.66
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 93.63
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 93.61
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 93.42
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 93.4
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 93.27
PRK06835329 DNA replication protein DnaC; Validated 93.21
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 93.12
TIGR00064272 ftsY signal recognition particle-docking protein F 93.06
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 93.06
smart00491142 HELICc2 helicase superfamily c-terminal domain. 92.87
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 92.85
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 92.85
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 92.83
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 92.82
PRK10416318 signal recognition particle-docking protein FtsY; 92.78
PRK09112351 DNA polymerase III subunit delta'; Validated 92.72
KOG18051100 consensus DNA replication helicase [Replication, r 92.7
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 92.64
PRK08939306 primosomal protein DnaI; Reviewed 92.64
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 92.61
PRK11773721 uvrD DNA-dependent helicase II; Provisional 92.52
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 92.52
COG4626546 Phage terminase-like protein, large subunit [Gener 92.47
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 92.45
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 92.44
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 92.43
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 92.34
PF13173128 AAA_14: AAA domain 92.32
PRK08533230 flagellar accessory protein FlaH; Reviewed 92.31
PLN03025319 replication factor C subunit; Provisional 92.18
PRK14088440 dnaA chromosomal replication initiation protein; P 92.17
KOG02981394 consensus DEAD box-containing helicase-like transc 92.05
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 92.02
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 92.0
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 91.94
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 91.93
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 91.92
PRK14087450 dnaA chromosomal replication initiation protein; P 91.89
KOG0736953 consensus Peroxisome assembly factor 2 containing 91.81
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 91.7
PRK06620214 hypothetical protein; Validated 91.66
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 91.63
TIGR02928365 orc1/cdc6 family replication initiation protein. M 91.6
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 91.54
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 91.48
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 91.44
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 91.37
CHL00181287 cbbX CbbX; Provisional 91.22
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 91.04
TIGR02012321 tigrfam_recA protein RecA. This model describes or 91.02
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 90.98
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 90.94
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 90.88
PRK00771437 signal recognition particle protein Srp54; Provisi 90.8
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 90.79
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 90.71
PRK11823446 DNA repair protein RadA; Provisional 90.7
cd03115173 SRP The signal recognition particle (SRP) mediates 90.67
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 90.55
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 90.54
PRK13833323 conjugal transfer protein TrbB; Provisional 90.49
PRK14086617 dnaA chromosomal replication initiation protein; P 90.49
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 90.46
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 90.44
PF13871278 Helicase_C_4: Helicase_C-like 90.27
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 90.22
COG2256436 MGS1 ATPase related to the helicase subunit of the 90.2
PTZ00293211 thymidine kinase; Provisional 89.99
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 89.95
PHA03372668 DNA packaging terminase subunit 1; Provisional 89.77
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 89.72
PRK13341725 recombination factor protein RarA/unknown domain f 89.69
PHA02544316 44 clamp loader, small subunit; Provisional 89.64
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 89.57
PRK09087226 hypothetical protein; Validated 89.57
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 89.46
PRK05973237 replicative DNA helicase; Provisional 89.41
PF05729166 NACHT: NACHT domain 89.41
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 89.36
KOG15131300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 89.04
PRK05707328 DNA polymerase III subunit delta'; Validated 89.0
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 88.88
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 88.88
COG2109198 BtuR ATP:corrinoid adenosyltransferase [Coenzyme m 88.85
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 88.81
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 88.77
PRK08769319 DNA polymerase III subunit delta'; Validated 88.7
PF00004132 AAA: ATPase family associated with various cellula 88.68
PRK13342413 recombination factor protein RarA; Reviewed 88.59
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 88.57
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 88.56
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 88.56
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 88.52
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 88.5
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 88.47
cd01393226 recA_like RecA is a bacterial enzyme which has rol 88.38
PRK13894319 conjugal transfer ATPase TrbB; Provisional 88.31
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 88.23
KOG2028554 consensus ATPase related to the helicase subunit o 88.2
PRK13851344 type IV secretion system protein VirB11; Provision 88.2
PRK00440319 rfc replication factor C small subunit; Reviewed 88.18
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 88.1
PHA00350399 putative assembly protein 88.06
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 88.05
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 88.05
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 88.02
PRK04841903 transcriptional regulator MalT; Provisional 87.98
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 87.9
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 87.77
TIGR02688449 conserved hypothetical protein TIGR02688. Members 87.74
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 87.72
TIGR00767415 rho transcription termination factor Rho. Members 87.6
PRK08506472 replicative DNA helicase; Provisional 87.6
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 87.4
PRK10867433 signal recognition particle protein; Provisional 87.38
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 87.25
PRK11331459 5-methylcytosine-specific restriction enzyme subun 87.2
PRK06964342 DNA polymerase III subunit delta'; Validated 87.17
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 87.12
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 86.98
PRK13695174 putative NTPase; Provisional 86.88
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 86.8
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 86.55
PRK05748448 replicative DNA helicase; Provisional 86.49
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 86.43
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 86.4
COG0593408 DnaA ATPase involved in DNA replication initiation 86.38
PRK06090319 DNA polymerase III subunit delta'; Validated 86.27
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 86.27
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 86.26
PHA02542473 41 41 helicase; Provisional 86.09
PRK07940394 DNA polymerase III subunit delta'; Validated 86.0
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 85.89
PRK07004460 replicative DNA helicase; Provisional 85.7
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 85.67
COG2255332 RuvB Holliday junction resolvasome, helicase subun 85.59
PF12846304 AAA_10: AAA-like domain 85.5
PRK10436462 hypothetical protein; Provisional 85.45
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 85.42
PRK04328249 hypothetical protein; Provisional 85.28
PRK06067234 flagellar accessory protein FlaH; Validated 85.2
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 85.19
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 85.17
TIGR02237209 recomb_radB DNA repair and recombination protein R 85.1
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 84.93
PRK03992389 proteasome-activating nucleotidase; Provisional 84.83
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 84.8
PRK06904472 replicative DNA helicase; Validated 84.79
COG0470325 HolB ATPase involved in DNA replication [DNA repli 84.72
KOG1001674 consensus Helicase-like transcription factor HLTF/ 84.65
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 84.63
PRK06871325 DNA polymerase III subunit delta'; Validated 84.32
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 84.24
PRK07471365 DNA polymerase III subunit delta'; Validated 84.23
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 84.07
cd00983325 recA RecA is a bacterial enzyme which has roles in 84.05
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 84.02
TIGR00763775 lon ATP-dependent protease La. This protein is ind 83.9
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 83.83
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 83.69
PRK09376416 rho transcription termination factor Rho; Provisio 83.57
cd01394218 radB RadB. The archaeal protein radB shares simila 83.5
COG3973747 Superfamily I DNA and RNA helicases [General funct 83.25
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 83.2
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 83.06
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 83.05
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 82.93
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 82.72
PRK09354349 recA recombinase A; Provisional 82.67
PRK05636505 replicative DNA helicase; Provisional 82.36
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 82.33
PRK08840464 replicative DNA helicase; Provisional 82.3
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 82.29
PRK07399314 DNA polymerase III subunit delta'; Validated 82.28
TIGR00959428 ffh signal recognition particle protein. This mode 82.27
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 81.71
PRK12608380 transcription termination factor Rho; Provisional 81.69
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 81.55
PRK08006471 replicative DNA helicase; Provisional 81.18
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 81.16
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 81.12
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 80.95
COG3972660 Superfamily I DNA and RNA helicases [General funct 80.72
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 80.67
KOG2228408 consensus Origin recognition complex, subunit 4 [R 80.65
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 80.64
CHL00176638 ftsH cell division protein; Validated 80.15
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-233  Score=2054.86  Aligned_cols=1228  Identities=47%  Similarity=0.719  Sum_probs=1007.7

Q ss_pred             cccceeeeccccceeEEeeccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCCCchhccCCCCcc
Q 039491            9 ELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFD   88 (1379)
Q Consensus         9 ~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~   88 (1379)
                      +|-||++|+|||||  +++-.+.    -+-++|+ ..++  .+     ..+..+ +.||.|+.++|+.|.+.+|..|+++
T Consensus         4 ~l~~~~~~v~~~~~--~~~~~~~----~~~~~~~-~~~~--~~-----~a~~~~-~~fl~~s~~l~~~~~~~~~~~~~~~   68 (1248)
T KOG0947|consen    4 ELGFRLGEVGHGGH--VELFLDG----IRDDSLN-SMLS--IP-----YAKVRV-DIFLKPSAALPFDRQNPSQEKWNRK   68 (1248)
T ss_pred             hhhhhhhhhhcCCc--ceeccCC----Ccccccc-cCCC--Cc-----hhHHHH-HHHhCCccccCccccCcchhhhccc
Confidence            78999999999999  4443332    2333444 2223  11     333434 8899999999999999999999999


Q ss_pred             ccccccccCCCCCCcceeccccccCeeecCCCC-cccceeeeecccccCccCCCCCCCCCCCCcCccccCCCCCCCCCCC
Q 039491           89 WFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQG-KWEPNSVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGG  167 (1379)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g-~~~~~~~~~~~~~~~~~~s~s~~r~~~~~~~~~rg~~~~~pf~pgg  167 (1379)
                      .++.+|+..+.++.||.++      |+|+|++| |+||+|+..+..+++|+||+|+.|.|||+.+++||+++|+||||||
T Consensus        69 ~d~~sll~~p~~p~~~~~~------fqr~~~egki~gyke~ll~~~~~~a~~S~sf~r~p~~~~~~~rgs~~n~pF~pg~  142 (1248)
T KOG0947|consen   69 DDYKSLLKVPDAPARTEIQ------FQRHGTEGKIIGYKEVLLEVVNLSASTSLSFFRFPGPALNSLRGSPPNFPFTPGG  142 (1248)
T ss_pred             CCHHHHhcCCCCCCccccc------eeeccccCceecchhhhhhhhccccccceeeecCCCCccccccCCCCCCCcCCCC
Confidence            9999999999999999995      99999999 9999999666678999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCcchhHhHhcCCCCcccCCccccCCCCCccccccccccccccccccccccccchhhhhhccchh
Q 039491          168 LEDSQSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQSSLKSTSDEKLNELSVQFD  247 (1379)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (1379)
                      +++.....+    ....+++..++.++++|++|||||++|+++.....      ...+     ..  .      .+++  
T Consensus       143 i~~~~~~~~----~st~~~~~~~L~fk~~L~~vpP~~~q~~~~~~~~~------~~e~-----~~--~------~~~~--  197 (1248)
T KOG0947|consen  143 IEEPNIAGE----TSTSGEESKELSFKDDLLTVPPGFSQGLDPMESDS------ETEA-----EN--P------KSIN--  197 (1248)
T ss_pred             CCCcccccC----cccchhhhhhcccCCccccCCcchhcccCCccCCC------CCcc-----cC--c------cchh--
Confidence            986653322    22346788888999999999999999999844321      1111     00  0      0001  


Q ss_pred             HhhhhhhhhhhhhhccCCCCchhhhhhhhhccCCCCchhhhhhhhhhhhccccceecccccccccCCCCCCCCCCC-Ccc
Q 039491          248 DLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGPQLEPESI-DSD  326 (1379)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  326 (1379)
                      +.+.+   .+   ... .+.          -.+..+++                             ....+.++. +.+
T Consensus       198 ~~~de---~D---~~~-e~~----------~~~~~~~~-----------------------------~~~~~i~~e~~~~  231 (1248)
T KOG0947|consen  198 DMLDE---LD---LVN-EYN----------IHKVAESV-----------------------------KKSESIESEEEAD  231 (1248)
T ss_pred             hhccc---cc---ccc-hhh----------hhhhhhcc-----------------------------cCcCCCCcchhhc
Confidence            22211   00   000 000          00000111                             000111100 000


Q ss_pred             ccCCcccCCCCCcccChhhhhhhhccCCCCCcccCCCCCCccccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHH
Q 039491          327 AEGKTTVGFNSVKEADLSVLDEILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQK  406 (1379)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~  406 (1379)
                      +       ..+....+..++|++++.+...... .|.......+..|+++++...+.++|++++|+|+..|||+||+||+
T Consensus       232 e-------~~s~~~~~~~~iddli~~~~~~~v~-~p~a~t~~~k~~wa~~vd~~~~~~df~~lVpe~a~~~pFelD~FQk  303 (1248)
T KOG0947|consen  232 E-------EVSAGNEDDSEIDDLIPEETEFSVD-TPEASTRPVKFEWAHVVDLSSLVEDFYQLVPEMALIYPFELDTFQK  303 (1248)
T ss_pred             c-------cccccccccccccccccccceeeec-CccccCCCccccceeeeecccchHHHHHhchhHHhhCCCCccHHHH
Confidence            0       1122333455678888877654422 2223334458899999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCcee
Q 039491          407 EAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCL  485 (1379)
Q Consensus       407 eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~Il  485 (1379)
                      +||+++++|++|||+|||+||||+||+|||+.+.+|++|+|||+|+|||+||+||+|++.| +||++|||+++||+|+|+
T Consensus       304 ~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqinPeAsCL  383 (1248)
T KOG0947|consen  304 EAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQINPEASCL  383 (1248)
T ss_pred             HHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecceeeCCCcceE
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEE
Q 039491          486 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIR  565 (1379)
Q Consensus       486 V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~  565 (1379)
                      ||||||||+|||+|++.+++++|||||||||++|.+||+|||++|+|||+|+++|+||||+||+.|||+|+|+++++.++
T Consensus       384 IMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~Iy  463 (1248)
T KOG0947|consen  384 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIY  463 (1248)
T ss_pred             eehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChHHHHHHhhhccCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCcCceEEEeecCceeeecc-CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCC
Q 039491          566 VTGTTKRPVPLEHCLYYSGEFYKVCE-NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGK  644 (1379)
Q Consensus       566 vi~t~~RpvpLe~~l~~~~~l~~i~d-~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr  644 (1379)
                      |++|.+|||||+||+|..+.+++|++ ++.|...+++.+.+...+..+....       ....++++++.+.    ++|+
T Consensus       464 ViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~-------~~~~~~~~rgs~~----~ggk  532 (1248)
T KOG0947|consen  464 VISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV-------EKSDARGGRGSQK----RGGK  532 (1248)
T ss_pred             EEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc-------ccccccccccccc----cCCc
Confidence            99999999999999999999999998 8889999898887776521111100       0111122222221    2333


Q ss_pred             CCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 039491          645 QNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD  724 (1379)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~  724 (1379)
                      ++.+.+  +.++.+.   +..++. .+.|..++++|.+.+..|+|||||||++|+++|+.|.+.++++..||++++.|++
T Consensus       533 ~~~~~g--~~r~~~~---~~nrr~-~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~  606 (1248)
T KOG0947|consen  533 TNYHNG--GSRGSGI---GKNRRK-QPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLS  606 (1248)
T ss_pred             CCCCCC--Ccccccc---cccccc-cchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            332221  1111111   111111 2679999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccC
Q 039491          725 KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD  804 (1379)
Q Consensus       725 ~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfD  804 (1379)
                      ++..+|+++||+|||+..++++|.||||+||||++|+.|+.||.+|++|.+||||||+|||||||||+++|||++++|||
T Consensus       607 k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhD  686 (1248)
T KOG0947|consen  607 KAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHD  686 (1248)
T ss_pred             HHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcccccccccHHHHHHHHhhccccHHHH
Q 039491          805 GREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDM  884 (1379)
Q Consensus       805 g~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLlr~e~~~~e~~  884 (1379)
                      |.+||.++|+||+||+|||||||.|.+|+||++|.+..|+.+.+++|+.|.+.+|+||||+||+|||||||++.+++|+|
T Consensus       687 G~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~MILnLLRve~lrvEdm  766 (1248)
T KOG0947|consen  687 GNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGMILNLLRVEALRVEDM  766 (1248)
T ss_pred             CcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HhhChhhHHhcCCcHHHHHHHHHHHcCCCCccc---ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCce
Q 039491          885 LKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIE---CIKGEPAIEEYYDMYYEAEKYNNQITEAFMQS--AHQFLMPGRV  959 (1379)
Q Consensus       885 l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~---c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Grl  959 (1379)
                      |+|||++|..++..|++++++ .+++.++..++   |..+..++..|+....++.+++.+++...+++  +++.|+.||+
T Consensus       767 ~krSf~E~~s~~~~~~~eq~l-~~~~eel~sie~s~c~~~~~~l~kyl~a~~e~~e~~~~l~~~~~~s~~~~~~l~~GR~  845 (1248)
T KOG0947|consen  767 MKRSFSEFVSQRLSPEHEQEL-KELDEELLSIEESDCAIDLKDLRKYLSAYEEITEYNEKLREEKMKSANILRILKEGRV  845 (1248)
T ss_pred             HHHHhhhhhhhhcCHHHHHHH-HHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCcE
Confidence            999999999999999999999 99888888877   45566889999999999999999999977777  9999999999


Q ss_pred             EEEecCCCCCcceEEEEecCCCCCCceEEEEEcCCCCCCcccccCCCCCCCCCCcccccCCCCC-------ceeEeeccc
Q 039491          960 LFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRG-------LEEEYCGSV 1032 (1379)
Q Consensus       960 v~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 1032 (1379)
                      |++++ .+....+|||+....+.+..+.+.......+..+ .+. .+.+.+.  +.+.+..-.+       ....+|+..
T Consensus       846 vv~k~-~~~~~~lg~vl~~s~~t~~~~~~~~~~~~~p~~~-~~~-~~~~s~a--~~~~p~~l~af~~~~~~~~~~~~~~~  920 (1248)
T KOG0947|consen  846 VVLKN-LKEENNLGVVLKVSLNTNGRVCVVLVAYLKPLDN-KNG-SLDPSFA--LNLIPDSLLAFEKFFPNVPRNVPLGS  920 (1248)
T ss_pred             EEEcC-hhhhcccceEEEEecCCCcceEEEEEeeccCCcC-cCC-CcCcccc--cccCcchhhccccccCCcccccceec
Confidence            99998 5677899999998765444433332211111110 000 0000000  1000000000       000011000


Q ss_pred             ccccccceeeeecCCCCccCCccceeeccccccccccccccccccccCccCchhHHHHHHHHHHHHHhccCCCCCCCCCC
Q 039491         1033 SHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALD 1112 (1379)
Q Consensus      1033 ~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1112 (1379)
                               ...+|    -.+....+..++  .|+.+|.+.++... ....+....++....+++..+.....+.++..+
T Consensus       921 ---------~~~~~----~~~v~~~~~g~~--~ie~l~~~~~~~~~-~~~~D~~~aal~~~~~~~l~l~~~~~~~~~~~e  984 (1248)
T KOG0947|consen  921 ---------LNPLY----LSGVTAYVKGVP--NIEILCGDALRQII-GKVADGQKAALNESTAQVLDLLEGSLETPTWKE  984 (1248)
T ss_pred             ---------ccccc----hhccchhhcCCc--chhhhhcccccccc-ccccccHHHHHHHHHHHhhhhhhcCccCcchhh
Confidence                     00111    011111223344  44444444443332 122457788888888888877665544577889


Q ss_pred             hhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcHHhhhchhHHHHHHHHHh
Q 039491         1113 PVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLK 1192 (1379)
Q Consensus      1113 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~~~h~~~~~~~~~l~~~i~~l~~~ls~~~l~l~~e~~~r~~VL~ 1192 (1379)
                      |+++.+.++.++.+...++.++++.+...||++||+|.+||....++++++.++++|+.++|+++|.++|+|++|++||+
T Consensus       985 pv~~~k~kd~e~~~~~l~~~n~~~~~~~~~~i~c~~f~~h~s~~~~~~~~~~ei~~L~~~~sd~~L~l~pey~~RlevLk 1064 (1248)
T KOG0947|consen  985 PVNDSKLKDDEVVEMLLERTNLQNLIQGNPCISCPKFDQHYSLARREYKIEKEIENLEFELSDQSLLLSPEYHNRLEVLK 1064 (1248)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHHhcCCccCCccHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcCCCCCCHHHHHHHhheeeeeccCCCCCCCChHHHHHHHHHHHHH
Q 039491         1193 EIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTA 1272 (1379)
Q Consensus      1193 ~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~l~~l~p~eiaAlLS~fV~q~k~~~~p~l~~~L~~~~~~i~~ia 1272 (1379)
                      .+||||+..+|++||||||||||++|||||||||+|.|.+|+|+|||||||+||||++++..|.++|.|+++.+++.+++
T Consensus      1065 ~~g~vD~~~~V~lkGRvAceI~s~~ELllteli~dn~l~~l~peeiaallSslV~e~~~e~~~~~~~~l~k~~e~v~~v~ 1144 (1248)
T KOG0947|consen 1065 PLGFVDEMRTVLLKGRVACEINSGNELLLTELIFDNALVDLSPEEIAALLSSLVCEGKTERPPTLTPYLKKGKERVRDVA 1144 (1248)
T ss_pred             hcCcccccceeeecceeeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHHHHHHhcCccccCCCCChhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHcCCCCChh-hhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhhhhcCCH
Q 039491         1273 IRLGELQAHFKVQIDPE-EYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNS 1351 (1379)
Q Consensus      1273 ~~i~~~~~~~~v~~~~~-~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa~~igd~ 1351 (1379)
                      ++|.++|..|++.++++ +|... ++||||+|||+||+|+||++||++|+++||+|||||+||||+|||+++||++||||
T Consensus      1145 ~rl~ev~~~~~~~~~~~e~f~~~-lrF~l~evVYeWA~G~sf~eim~~t~~~EG~iVR~I~RLdE~cre~~~aa~ivGd~ 1223 (1248)
T KOG0947|consen 1145 KRLEEVQSSHQLLQTPEEEFPCE-LRFGLVEVVYEWARGLSFKEIMELTDVLEGLIVRLIQRLDEVCRELRNAARIVGDP 1223 (1248)
T ss_pred             HHHHHHHHhhccccCchhhcccc-ccccHHHHHHHHHcCCCHHHHHhhhCCcchhHHHHHHHHHHHHHhhhccceecCcH
Confidence            99999999999999976 56666 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCeeeeccccc
Q 039491         1352 ALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus      1352 ~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
                      .|+.||++|+++||||||||||||+
T Consensus      1224 ~L~~Km~~as~~ikRdIVFaaSLY~ 1248 (1248)
T KOG0947|consen 1224 VLHEKMEAASALIKRDIVFAASLYL 1248 (1248)
T ss_pred             HHHHHHHHHHHHhccCccchhhccC
Confidence            9999999999999999999999997

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1379
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 0.0
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 1e-171
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 1e-170
2va8_A715 Dna Repair Helicase Hel308 Length = 715 5e-18
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 6e-18
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 3e-14
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 2e-12
4f91_B1724 Brr2 Helicase Region Length = 1724 1e-11
4f91_B 1724 Brr2 Helicase Region Length = 1724 8e-10
4f91_B1724 Brr2 Helicase Region Length = 1724 5e-06
4f92_B1724 Brr2 Helicase Region S1087l Length = 1724 1e-11
4f92_B 1724 Brr2 Helicase Region S1087l Length = 1724 9e-10
4f92_B1724 Brr2 Helicase Region S1087l Length = 1724 6e-06
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure 
Iteration: 1

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1034 (41%), Positives = 603/1034 (58%), Gaps = 72/1034 (6%)
Query: 370  KEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKT 429
            K+ W          + F EL+P+ A  +PFELD FQKEA+Y+LE GDSVFVAAHTSAGKT
Sbjct: 9    KKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKT 68
Query: 430  VVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFD---VGLLTGDVSLRPEASCLI 486
            VVAEYA A+A ++ T+ +YT+PIK +SNQK+RDF   FD   +GL+TGDV + P+A+CLI
Sbjct: 69   VVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLI 128
Query: 487  MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546
            MTTEILRSMLYRGAD+IRD+E+VIFDEVHYVND +RGVVWEEVIIMLP+H+  +LLSATV
Sbjct: 129  MTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATV 188
Query: 547  PNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVC-ENEAFIPQGWKAAKD 605
            PNT EFA+WIGRTKQK I V  T KRPVPLE  ++   E   V  +N  F+   ++  K+
Sbjct: 189  PNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKE 248
Query: 606  AYKRKNLXXXXXXXXXXXXXXXPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGL 665
                ++                 R G R        RG +  +S  G  N GGS+    +
Sbjct: 249  ILNGESAKGAPSKTDNGRGGSTAR-GGRGGSNTRDGRGGRG-NSTRGGANRGGSRGAGAI 306
Query: 666  RRSEVSI----------WLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSE 715
              ++             W  ++N L K+ LLP+V+F FSK  C++ AD + GI+  ++ E
Sbjct: 307  GSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKE 366
Query: 716  KSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVV 775
            KS+I +F +K+ +RLK  DR+LPQI++ +SLL RGIA+HH GLLPIVKE+IE+LF +G +
Sbjct: 367  KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFI 426
Query: 776  KVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835
            KVLF+TETFAMG+N P RTV+F ++RK DG   R+L PGE+TQMAGRAGRRGLD  GTV+
Sbjct: 427  KVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI 486
Query: 836  VLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQ 895
            V+  +     +  K + +G  TRL+SQFRLTY MIL+LLR+E L+VE+M+K SF+E   +
Sbjct: 487  VMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKE 546
Query: 896  KKLPEQQQLLMRKLAQPPKTIE---CIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAH- 951
               PE ++ + + L +  +TIE   C   +  IE++ ++    ++    + +  ++S   
Sbjct: 547  TLQPEHEKQI-KVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSI 605
Query: 952  -QFLMPGRVLFVKSQTGQDHL-LGAVVKAPSANNKEYIVMLLKP-DLPSASETSLDKKSG 1008
               L  GR+  V  +   D L LG V K    +    I+   KP  LP+     L     
Sbjct: 606  LHILKEGRL--VAFRDPNDCLKLGFVFKVSLKDAVCVIMTFTKPYKLPNGEPNHLI---- 659
Query: 1009 DFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLC 1068
                 YF  PK+             +R+ +     K  ++     V+  +  I K++   
Sbjct: 660  -----YF--PKAD-----------GYRRRNFPKFQKTDFYMEEVPVT-AIEVITKRKFAA 700
Query: 1069 ICNCKIKIDQVGLLE---DVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLV 1125
                 IK D   L E   + ++    KT+++ + ++    K  Q L       L   N+ 
Sbjct: 701  PLGKVIKKDVAALNEFNAETNNILDGKTLKEAINIEKQGLKIHQIL-------LDRTNIR 753
Query: 1126 EAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQ 1185
            +  +K           K   C  L +H+    +    K ++  L   MSD+ L  +PD++
Sbjct: 754  DEIFKL----------KSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYE 803
Query: 1186 GRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAF 1245
             R+ VLK+   ID +  V +KGRVACE+NSG EL+ TE + +N L   EPEE VA++S F
Sbjct: 804  KRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVF 863
Query: 1246 VFQQRNTSE--PSLTPKLSVAKERLYNTAIR-LGELQAHFKVQIDPEEYARDNLKFGLVE 1302
            V++ +   E  P +TP+L+  K+R+     + L     H       E    D  +F ++ 
Sbjct: 864  VYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMN 923
Query: 1303 VVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASN 1362
            VVYEWA+G  F +I E++   EG +VR I  LDE CRE + A+ I+GNS L+ KM  A  
Sbjct: 924  VVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQE 983
Query: 1363 AIKRDIVFAASLYI 1376
             IKRDIVFAASLY+
Sbjct: 984  LIKRDIVFAASLYL 997
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1379
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 0.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 0.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 0.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 1e-60
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 9e-52
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 3e-47
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 8e-45
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 4e-47
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 1e-43
3b6e_A216 Interferon-induced helicase C domain-containing P; 6e-17
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 2e-16
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-09
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 5e-09
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 3e-08
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 6e-07
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 2e-06
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 1e-05
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 9e-05
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 6e-04
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
 Score =  916 bits (2368), Expect = 0.0
 Identities = 400/1029 (38%), Positives = 587/1029 (57%), Gaps = 56/1029 (5%)

Query: 367  QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSA 426
               K+ W          + F EL+P+ A  +PFELD FQKEA+Y+LE GDSVFVAAHTSA
Sbjct: 6    VPVKKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSA 65

Query: 427  GKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF---DVGLLTGDVSLRPEAS 483
            GKTVVAEYA A+A ++ T+ +YT+PIK +SNQK+RDF   F   ++GL+TGDV + P+A+
Sbjct: 66   GKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDAN 125

Query: 484  CLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543
            CLIMTTEILRSMLYRGAD+IRD+E+VIFDEVHYVND +RGVVWEEVIIMLP+H+  +LLS
Sbjct: 126  CLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLS 185

Query: 544  ATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYK-VCENEAFIPQGWKA 602
            ATVPNT EFA+WIGRTKQK I V  T KRPVPLE  ++   E    + +N  F+   ++ 
Sbjct: 186  ATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRK 245

Query: 603  AKDAYKRKNLSAASGATGSYAGASSPRDGARA-------QKREHPNRGKQNKHSVVGIKN 655
             K+    ++   A   T +  G S+ R G            R +  RG  N+    G   
Sbjct: 246  HKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGA 305

Query: 656  SGGSQNNWGL-RRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSS 714
             G ++  +          W  ++N L K+ LLP+V+F FSK  C++ AD + GI+  ++ 
Sbjct: 306  IGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNK 365

Query: 715  EKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGV 774
            EKS+I +F +K+ +RLK  DR+LPQI++ +SLL RGIA+HH GLLPIVKE+IE+LF +G 
Sbjct: 366  EKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF 425

Query: 775  VKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTV 834
            +KVLF+TETFAMG+N P RTV+F ++RK DG   R+L PGE+TQMAGRAGRRGLD  GTV
Sbjct: 426  IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTV 485

Query: 835  VVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHS 894
            +V+  +     +  K + +G  TRL+SQFRLTY MIL+LLR+E L+VE+M+K SF+E   
Sbjct: 486  IVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAK 545

Query: 895  QKKLPEQQQLL--MRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAH- 951
            +   PE ++ +  +++  Q  +   C   +  IE++ ++    ++    + +  ++S   
Sbjct: 546  ETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSI 605

Query: 952  -QFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDF 1010
               L  GR++  +        LG V K    +    I+   KP            K  + 
Sbjct: 606  LHILKEGRLVAFRDP-NDCLKLGFVFKVSLKDAVCVIMTFTKP-----------YKLPNG 653

Query: 1011 SEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCIC 1070
               + +      G                    +           + +  +    +  I 
Sbjct: 654  EPNHLIYFPKADG-------------------YRRRNFPKFQKTDFYMEEVPVTAIEVIT 694

Query: 1071 NCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYK 1130
              K       +++                 +++     + L    +++ + + + +    
Sbjct: 695  KRKFAAPLGKVIKK------DVAALNEFNAETNNILDGKTLKEAINIEKQGLKIHQILLD 748

Query: 1131 WAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDV 1190
               +  ++   K   C  L +H+    +    K ++  L   MSD+ L  +PD++ R+ V
Sbjct: 749  RTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAV 808

Query: 1191 LKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQR 1250
            LK+   ID +  V +KGRVACE+NSG EL+ TE + +N L   EPEE VA++S FV++ +
Sbjct: 809  LKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGK 868

Query: 1251 NTSE--PSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYA-RDNLKFGLVEVVYEW 1307
               E  P +TP+L+  K+R+     ++  +    ++ +  +E    D  +F ++ VVYEW
Sbjct: 869  TREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEW 928

Query: 1308 AKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRD 1367
            A+G  F +I E++   EG +VR I  LDE CRE + A+ I+GNS L+ KM  A   IKRD
Sbjct: 929  ARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRD 988

Query: 1368 IVFAASLYI 1376
            IVFAASLY+
Sbjct: 989  IVFAASLYL 997
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1379
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4ddu_A1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.97
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.97
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.97
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.97
3h1t_A590 Type I site-specific restriction-modification syst 99.97
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.97
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.97
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.97
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.97
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.96
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.96
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.95
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.94
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.94
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.94
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.93
3bor_A237 Human initiation factor 4A-II; translation initiat 99.93
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.93
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.93
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.93
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.93
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.93
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.92
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.92
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.92
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.92
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.92
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.92
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.91
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.91
3jux_A822 Protein translocase subunit SECA; protein transloc 99.89
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.85
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.82
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.82
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.79
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.78
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.77
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.77
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 99.77
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.76
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.76
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.75
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.75
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.74
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.73
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.73
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.72
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.67
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.49
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.5
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.33
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.34
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 98.1
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 98.0
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.67
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.59
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.55
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.4
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 97.04
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 96.92
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 96.88
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.63
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 96.21
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 95.98
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 95.77
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 95.72
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 95.6
2kjq_A149 DNAA-related protein; solution structure, NESG, st 95.34
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 95.18
2v1u_A387 Cell division control protein 6 homolog; DNA repli 95.15
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 95.07
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 94.92
3bos_A242 Putative DNA replication factor; P-loop containing 94.68
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 94.43
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 94.38
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 94.33
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 94.28
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 94.2
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 94.12
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 94.09
2qgz_A308 Helicase loader, putative primosome component; str 94.08
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 93.8
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 93.77
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 93.76
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 93.26
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 93.22
2chg_A226 Replication factor C small subunit; DNA-binding pr 93.22
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 93.17
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 93.12
3co5_A143 Putative two-component system transcriptional RES 92.7
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 92.4
2cvh_A220 DNA repair and recombination protein RADB; filamen 92.31
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 92.24
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 92.24
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 92.18
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 92.11
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 92.09
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 92.06
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 91.56
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 91.43
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 91.39
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 91.11
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 91.03
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 90.98
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 90.95
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 90.93
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 90.78
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 90.76
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 90.76
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 90.7
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 90.39
2r6a_A454 DNAB helicase, replicative helicase; replication, 90.36
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 90.32
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 89.97
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 89.8
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 89.68
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 89.33
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 88.99
2gno_A305 DNA polymerase III, gamma subunit-related protein; 88.73
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 88.05
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 87.98
1u94_A356 RECA protein, recombinase A; homologous recombinat 87.86
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 87.57
2chq_A319 Replication factor C small subunit; DNA-binding pr 87.39
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 87.08
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 86.84
1xp8_A366 RECA protein, recombinase A; recombination, radior 86.63
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 86.25
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 85.9
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 85.85
1vma_A306 Cell division protein FTSY; TM0570, structural gen 85.47
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 85.38
3pvs_A447 Replication-associated recombination protein A; ma 84.75
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 84.73
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 84.7
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 84.45
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 83.94
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 83.86
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 82.95
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 82.9
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 82.76
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 82.28
3cmw_A1706 Protein RECA, recombinase A; homologous recombinat 81.5
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 80.09
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
Probab=100.00  E-value=2.2e-149  Score=1468.02  Aligned_cols=969  Identities=41%  Similarity=0.679  Sum_probs=783.5

Q ss_pred             cccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEE
Q 039491          368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAV  447 (1379)
Q Consensus       368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raI  447 (1379)
                      ..++.|+++.+.+..+.+|.+++|+++..|||+|+++|.+||+++.+|++++|+||||||||++|+++|...+..+.++|
T Consensus         7 ~~~~~wa~~~~~~~~~~~f~~l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vl   86 (997)
T 4a4z_A            7 PVKKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTI   86 (997)
T ss_dssp             --CCCSEEECCTTCCCTTHHHHCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEE
T ss_pred             cccccccchhcccccccchhhhhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEE
Confidence            35779999988888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecchHHHHHHHHHHHhccc---cEEEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchh
Q 039491          448 YTAPIKTISNQKYRDFSGKF---DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGV  524 (1379)
Q Consensus       448 ylsPtkaLsnQk~~~~~~~f---~VglltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~  524 (1379)
                      |++|+++|++|++++|++.|   ++++++|+.+.+++++|+||||++|.++++++...++++++|||||||++.+++||.
T Consensus        87 vl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~  166 (997)
T 4a4z_A           87 YTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGV  166 (997)
T ss_dssp             EEESCGGGHHHHHHHHHTTC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTC
T ss_pred             EEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHH
Confidence            99999999999999999987   899999999999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc-CcccchhhHHHH
Q 039491          525 VWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE-NEAFIPQGWKAA  603 (1379)
Q Consensus       525 v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d-~~~f~~~~~~~~  603 (1379)
                      +|+++++++|+++++|+||||++|..+|++|++..+..+++++.+..||+|++++++....++.+++ ...|...++..+
T Consensus       167 ~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~  246 (997)
T 4a4z_A          167 VWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKH  246 (997)
T ss_dssp             CHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHH
T ss_pred             HHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHH
Confidence            9999999999999999999999999999999999988999999999999999999999888898888 778888888877


Q ss_pred             HHHHHhhccccccCCCCCCCCCCCCccccccc-ccCC-CCCCCCC-CccccccccCCCCCCC-----cccccchhHHHHH
Q 039491          604 KDAYKRKNLSAASGATGSYAGASSPRDGARAQ-KREH-PNRGKQN-KHSVVGIKNSGGSQNN-----WGLRRSEVSIWLT  675 (1379)
Q Consensus       604 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~gr~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  675 (1379)
                      ...+.....................+.+.++. .+.. ..+|+++ +...++..++.+....     ..........+..
T Consensus       247 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (997)
T 4a4z_A          247 KEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE  326 (997)
T ss_dssp             HHHHC-----------------------------------------------------------------CCCCTTHHHH
T ss_pred             HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence            76655432211100000000000000000000 0000 0000000 0000000000000000     0001124566888


Q ss_pred             HHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEec
Q 039491          676 LINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHH  755 (1379)
Q Consensus       676 Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhH  755 (1379)
                      ++..+...+..++||||+|++.|+.++..|...++++..++..++.++++.+.++..+|+.+|++..+..++.+||++||
T Consensus       327 li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H  406 (997)
T 4a4z_A          327 IVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH  406 (997)
T ss_dssp             HHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred             HHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence            99999998889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEE
Q 039491          756 AGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV  835 (1379)
Q Consensus       756 ggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vI  835 (1379)
                      |||++.+|+.|+++|++|.++|||||+++++|||+|+++|||.+..+||+..++|+++.+|+||+|||||+|.+..|+||
T Consensus       407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi  486 (997)
T 4a4z_A          407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI  486 (997)
T ss_dssp             TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCCcccccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCc
Q 039491          836 VLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKT  915 (1379)
Q Consensus       836 il~~~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~  915 (1379)
                      +++.++.++...+++++.+.++++.|+|+++|||++|+++++..++++|+++||.+|+.....+..++.+ .++++++..
T Consensus       487 ~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l-~~l~~~~~~  565 (997)
T 4a4z_A          487 VMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQI-KVLQEELQT  565 (997)
T ss_dssp             EECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred             EecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHH
Confidence            9997666688999999999999999999999999999999999999999999999999999999999988 877776655


Q ss_pred             cc---ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCceEEEecCCCCCcceEEEEecCCCCCCceEEEE
Q 039491          916 IE---CIKGEPAIEEYYDMYYEAEKYNNQITEAFMQS--AHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVML  990 (1379)
Q Consensus       916 i~---c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Grlv~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~  990 (1379)
                      +.   |..|..++.+||+++.++.++++++.+.+.++  ++++|++||||.|++ ...+++||||++....+ ..+.++|
T Consensus       566 ~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~~~~-~~~~~~~~~v~~~~~~~-~~~~~~v  643 (997)
T 4a4z_A          566 IEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRD-PNDCLKLGFVFKVSLKD-AVCVIMT  643 (997)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHTTSTTHHHHTCTTEEEEEEC-TTCCEEEEEEEEEETTT-TEEEEEC
T ss_pred             hhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCHhHHhhCCCCCEEEEec-CCCCeeEEEEEeeccCC-CCCceEE
Confidence            55   44556789999999999999999887755544  899999999999987 44467899999975432 3457777


Q ss_pred             EcCCCCCCcccccCCC-CCCCCCCcccccCCCCCceeEeecccccccccceeeeecCCCCccCCccceeecccccccccc
Q 039491          991 LKPDLPSASETSLDKK-SGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCI 1069 (1379)
Q Consensus       991 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i 1069 (1379)
                      ++.............| .+.++.+..                            .+|  .......+.+..++++.|.+|
T Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~--~~~~~~~~~~~~~~~~~~~~~  693 (997)
T 4a4z_A          644 FTKPYKLPNGEPNHLIYFPKADGYRR----------------------------RNF--PKFQKTDFYMEEVPVTAIEVI  693 (997)
T ss_dssp             -CCCCC----------CCTTCHHHHH----------------------------HHC--CCCCCCCCCEEEEECC-CCEE
T ss_pred             EeccccccccCccccCCCcccccccc----------------------------ccc--CcccCCceEEEEeccchhhhh
Confidence            7653222110000000 000000000                            011  112345667777888888888


Q ss_pred             ccccccccccCccCchhHHHHHHHHHHHHHhccCCCCCCCCCChhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCH
Q 039491         1070 CNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKL 1149 (1379)
Q Consensus      1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~ 1149 (1379)
                      ++..++++..++.. ...++.....+++.+...     .|.++|++++++++.++.+...+++.++.++.+||||.||++
T Consensus       694 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (997)
T 4a4z_A          694 TKRKFAAPLGKVIK-KDVAALNEFNAETNNILD-----GKTLKEAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNL  767 (997)
T ss_dssp             EEEECC-CHHHHHH-TCHHHHHHHHHHHHHHHH-----SCCCCCC------CCHHHHHHHHHHHHHHC------------
T ss_pred             hcccccCChHhhhc-CCHHHHHHHHHHHHHHhc-----cCCCCchhhcccccHHHHHHHHHHHHHHHHHHhCCCCCCCCH
Confidence            88777765333332 223344444444444332     157899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHHhhhchhHHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcC
Q 039491         1150 EEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQ 1229 (1379)
Q Consensus      1150 ~~h~~~~~~~~~l~~~i~~l~~~ls~~~l~l~~e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~ 1229 (1379)
                      ++||.+++++++++++++.|+++++++++.++|||++|++||++|||||++++||+||||||||+|++||++|||||+|+
T Consensus       768 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~  847 (997)
T 4a4z_A          768 SQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNF  847 (997)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHhheeeeeccC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCCCh--hhhhhcCCCccHHHHHH
Q 039491         1230 LDDLEPEEAVAIMSAFVFQQRN--TSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDP--EEYARDNLKFGLVEVVY 1305 (1379)
Q Consensus      1230 l~~l~p~eiaAlLS~fV~q~k~--~~~p~l~~~L~~~~~~i~~ia~~i~~~~~~~~v~~~~--~~~~~~~~~f~l~~vvy 1305 (1379)
                      |++|+|+||||||||||||+|+  +++|.++++|+++++++.++|.+|++++.+|+++++.  ++|+++ ++||||+|||
T Consensus       848 ~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~  926 (997)
T 4a4z_A          848 LGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDR-KRFAMMNVVY  926 (997)
T ss_dssp             GGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHGGGS-CTTTTHHHHH
T ss_pred             ccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhccC-CChHHHHHHH
Confidence            9999999999999999999998  6678999999999999999999999999999999973  789998 9999999999


Q ss_pred             HHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccc
Q 039491         1306 EWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus      1306 eWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
                      +||+|+||++||++||++||||||||+||+|+||||++||++|||++|++||++|+++|||||||++||||
T Consensus       927 ~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~~l~~k~~~a~~~i~R~iv~~~slyl  997 (997)
T 4a4z_A          927 EWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL  997 (997)
T ss_dssp             HHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred             HHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeeecccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1379
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 4e-24
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 7e-19
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 2e-12
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 6e-12
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 3e-11
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 4e-11
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 6e-11
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 5e-10
d2eyqa3233 c.37.1.19 (A:546-778) Transcription-repair couplin 2e-09
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 9e-09
d2g9na1218 c.37.1.19 (A:21-238) Initiation factor 4a {Human ( 1e-08
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 3e-06
d1veca_206 c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma 5e-06
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 5e-06
d2j0sa1222 c.37.1.19 (A:22-243) Probable ATP-dependent RNA he 2e-05
d1t6na_207 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 2e-05
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 3e-05
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 4e-05
d1s2ma1206 c.37.1.19 (A:46-251) Putative ATP-dependent RNA he 2e-04
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 99.6 bits (247), Expect = 4e-24
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 11/168 (6%)

Query: 687 PVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL 746
            V++F  ++   +K A  +S I       +   +   ++    +    R L +       
Sbjct: 42  GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEM---SRKLAE------C 92

Query: 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR 806
           +R+G A HHAGLL   + V+E  F RG +KV+ +T T A GVN PAR V+  +L +FDG 
Sbjct: 93  VRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY 152

Query: 807 EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVG 854
             +++   EY QMAGRAGR G+D+ G  +++   +   E  +K  I G
Sbjct: 153 -SKRIKVSEYKQMAGRAGRPGMDERGEAIIIV-GKRDREIAVKRYIFG 198
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1379
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.97
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.95
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.95
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.95
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.95
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.94
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.94
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.94
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.94
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.93
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.92
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.92
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.87
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.85
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.83
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.81
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.8
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.79
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.79
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.78
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.76
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.76
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.76
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.74
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.74
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.72
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.7
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.7
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.7
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.63
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.62
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.55
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.46
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.38
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.37
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.31
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.25
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.93
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.92
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.92
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.8
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.68
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.12
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.73
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.7
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.44
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.01
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 96.84
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 96.65
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.91
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 94.79
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 94.26
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.07
d1ls1a2207 GTPase domain of the signal sequence recognition p 93.9
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 93.66
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 93.57
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 93.51
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 93.14
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 93.13
d1okkd2207 GTPase domain of the signal recognition particle r 92.9
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 92.64
d2qy9a2211 GTPase domain of the signal recognition particle r 92.57
d1j8yf2211 GTPase domain of the signal sequence recognition p 91.76
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 91.62
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 91.53
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 91.27
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 91.17
d1vmaa2213 GTPase domain of the signal recognition particle r 91.0
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 90.28
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 88.74
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 87.12
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 86.69
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 86.51
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 86.46
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 85.97
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 85.86
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 83.05
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 82.68
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 82.25
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 81.77
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=99.97  E-value=5.2e-31  Score=299.13  Aligned_cols=274  Identities=16%  Similarity=0.094  Sum_probs=186.1

Q ss_pred             HHCCCcEEEEcCCCccHHHHHHHHHHH-HHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCceeeecH
Q 039491          412 LENGDSVFVAAHTSAGKTVVAEYAFAL-ATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTT  489 (1379)
Q Consensus       412 L~~g~sVlV~ApTGSGKTlvae~aI~~-~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~IlV~Tp  489 (1379)
                      +.+|++++|.||||||||++|+.+++. ++.++.++||++|+++|++|+++.|++.. .+.....+........++++|+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~t~   85 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCH   85 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBCCC--------CCCSEEEEEH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEeecccCccccccCCc
Confidence            457899999999999999988766654 55778999999999999999999999876 4444444444556788999999


Q ss_pred             HHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc--CccceEEEecccCCChHHHHHHHhhhcCCcEEEE
Q 039491          490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML--PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVT  567 (1379)
Q Consensus       490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L--p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi  567 (1379)
                      +.|..++.. ...+.++++|||||||++.++  +......+..+  ....+++++|||+++...                
T Consensus        86 ~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~--~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~----------------  146 (305)
T d2bmfa2          86 ATFTMRLLS-PIRVPNYNLIIMDEAHFTDPA--SIAARGYISTRVEMGEAAGIFMTATPPGSRD----------------  146 (305)
T ss_dssp             HHHHHHHTS-SSCCCCCSEEEEESTTCCSHH--HHHHHHHHHHHHHHTSCEEEEECSSCTTCCC----------------
T ss_pred             HHHHHHHhc-CccccceeEEEeeeeeecchh--hHHHHHHHHHhhccccceEEEeecCCCccee----------------
Confidence            999887654 456789999999999999754  32233333322  356899999999875321                


Q ss_pred             ccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCC
Q 039491          568 GTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNK  647 (1379)
Q Consensus       568 ~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~  647 (1379)
                      ....+..|+.....      .+.+..                                                      
T Consensus       147 ~~~~~~~~~~~~~~------~~~~~~------------------------------------------------------  166 (305)
T d2bmfa2         147 PFPQSNAPIMDEER------EIPERS------------------------------------------------------  166 (305)
T ss_dssp             SSCCCSSCEEEEEC------CCCCSC------------------------------------------------------
T ss_pred             eecccCCcceEEEE------eccHHH------------------------------------------------------
Confidence            00111111110000      000000                                                      


Q ss_pred             ccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHh
Q 039491          648 HSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAF  727 (1379)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~  727 (1379)
                        .                   ..    ....+ .....+++|||++++.|+.++..|.+.++.                
T Consensus       167 --~-------------------~~----~~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~----------------  204 (305)
T d2bmfa2         167 --W-------------------NS----GHEWV-TDFKGKTVWFVPSIKAGNDIAACLRKNGKK----------------  204 (305)
T ss_dssp             --C-------------------SS----CCHHH-HSSCSCEEEECSCHHHHHHHHHHHHHHTCC----------------
T ss_pred             --H-------------------HH----HHHHH-HhhCCCEEEEeccHHHHHHHHHHHHhCCCC----------------
Confidence              0                   00    00111 223478999999999999999999765443                


Q ss_pred             hhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccc-----cc
Q 039491          728 SRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNL-----RK  802 (1379)
Q Consensus       728 ~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~-----~k  802 (1379)
                                             +..+||++.+..+    ..|++|..+++|||+++++|+|++...||..+.     ..
T Consensus       205 -----------------------~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~~~~Vi~~~~~~~~~~~  257 (305)
T d2bmfa2         205 -----------------------VIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVIL  257 (305)
T ss_dssp             -----------------------CEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEE
T ss_pred             -----------------------EEEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCCccEEEEcCCceeeeEe
Confidence                                   3468999866544    478999999999999999999998776653321     11


Q ss_pred             cCCcc------cccCCHHHHHHHhcccCCCCCCCcEE
Q 039491          803 FDGRE------FRQLLPGEYTQMAGRAGRRGLDKIGT  833 (1379)
Q Consensus       803 fDg~~------~rpls~~eyiQmaGRAGRrG~d~~G~  833 (1379)
                      ||+..      ..|.|+.+|+||+|||||.|....+.
T Consensus       258 ~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~  294 (305)
T d2bmfa2         258 TDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQ  294 (305)
T ss_dssp             CSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEE
T ss_pred             cCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEE
Confidence            44432      24779999999999999999764333
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure