Citrus Sinensis ID: 039507

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccHHHHHHcccccEEEEEccccccEEEEEcccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEEcccEEccccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccHHHHHccccccEEEEEccccccEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcHHHccccccccccEEEcccccc
Coil and Loop (DISEMBL)
rpeagdytifmgldkyeneelikygfpediwfhvdkmsSAHVYLRLHkgqtiddisegvLEDCAQLVKANsiqgnkvnnidvvytpwanlkktasmdvgqvgfhnpkm
Flexible Loop (DISEMBL)
rpeagdytifmgldkyeNEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKansiqgnkvnnIDVVYTPWANLkktasmdvgqvgfhnpkm
Low Complexity Region (SEG)
RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM
Disordered region (IsUnstruct)
*****DYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDV**********
Disordered Region (DISOPRED)
***AGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK*
Disordered Region (DISEMBL)
RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM
Disordered Region (DISPRO)
****GDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGF*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q6GLE1	206	Coiled-coil domain-contai	yes	no	0.935	0.490	0.792	8e-44
Q3SZX8	208	Coiled-coil domain-contai	yes	no	0.962	0.5	0.759	1e-43
Q5R9S1	208	Coiled-coil domain-contai	yes	no	0.935	0.485	0.772	3e-43
Q86WR0	208	Coiled-coil domain-contai	yes	no	0.935	0.485	0.772	3e-43
Q78PG9	208	Coiled-coil domain-contai	yes	no	0.962	0.5	0.75	5e-43
Q7T312	207	Coiled-coil domain-contai	yes	no	0.935	0.487	0.752	2e-41
Q55D55	206	Coiled-coil domain-contai	yes	no	0.944	0.495	0.647	4e-37
P40206	208	Protein JLP2 OS=Saccharom	yes	no	0.898	0.466	0.51	4e-22

>sp|Q6GLE1|CCD25_XENTR Coiled-coil domain-containing protein 25 OS=Xenopus tropicalis GN=ccdc25 PE=2 SV=1

 Score =  175 bits (443), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 91/101 (90%)

Query: 7   YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
           YT++MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRL K QTI+DI + VL DCAQL
Sbjct: 14  YTMYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKDQTIEDIPKEVLLDCAQL 73

Query: 67  VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
           VKANSIQG K+NNI+VVYTPWANLKKTA MD+GQ+GFH  K
Sbjct: 74  VKANSIQGCKMNNINVVYTPWANLKKTADMDIGQIGFHRQK 114

Xenopus tropicalis (taxid: 8364)

>sp|Q3SZX8|CCD25_BOVIN Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25 PE=2 SV=1

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 92/104 (88%)

Query: 4   AGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDC 63
           +  YTI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DC
Sbjct: 12  SSAYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDC 71

Query: 64  AQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
           A LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K
Sbjct: 72  AHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115

Bos taurus (taxid: 9913)

>sp|Q5R9S1|CCD25_PONAB Coiled-coil domain-containing protein 25 OS=Pongo abelii GN=CCDC25 PE=2 SV=2

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 91/101 (90%)

Query: 7   YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
           YTI+MG DKYENE+LIK+G+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DCA L
Sbjct: 15  YTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHL 74

Query: 67  VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
           VKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K
Sbjct: 75  VKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115

Pongo abelii (taxid: 9601)

>sp|Q86WR0|CCD25_HUMAN Coiled-coil domain-containing protein 25 OS=Homo sapiens GN=CCDC25 PE=1 SV=2

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 91/101 (90%)

Query: 7   YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
           YTI+MG DKYENE+LIK+G+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DCA L
Sbjct: 15  YTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHL 74

Query: 67  VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
           VKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K
Sbjct: 75  VKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115

Homo sapiens (taxid: 9606)

>sp|Q78PG9|CCD25_MOUSE Coiled-coil domain-containing protein 25 OS=Mus musculus GN=Ccdc25 PE=1 SV=1

 Score =  172 bits (437), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 91/104 (87%)

Query: 4   AGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDC 63
           +  YTI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRL KG+ I+DI + VL DC
Sbjct: 12  SSTYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKGEKIEDIPKEVLMDC 71

Query: 64  AQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
           A LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K
Sbjct: 72  AHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115

Mus musculus (taxid: 10090)

>sp|Q7T312|CCD25_DANRE Coiled-coil domain-containing protein 25 OS=Danio rerio GN=ccdc25 PE=1 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/101 (75%), Positives = 89/101 (88%)

Query: 7   YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
           +TI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLR+ KG TIDDI + VL DC QL
Sbjct: 14  HTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGTTIDDIPKEVLIDCVQL 73

Query: 67  VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
           VK NSIQG K+NNI++VYTPW+NLKKTA MD+GQ+GFH  K
Sbjct: 74  VKNNSIQGCKMNNINIVYTPWSNLKKTADMDIGQIGFHRQK 114

Danio rerio (taxid: 7955)

>sp|Q55D55|CCD25_DICDI Coiled-coil domain-containing protein 25 homolog OS=Dictyostelium discoideum GN=ccdc25 PE=3 SV=1

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 85/102 (83%)

Query: 6   DYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQ 65
           +Y  +MG+DK+ENE+LIKYG+PED+WFHV+ +SSAHVYLRL KG+T +DI   +LE+C Q
Sbjct: 11  EYICYMGIDKFENEDLIKYGWPEDVWFHVNDLSSAHVYLRLRKGETWNDIPANILEECCQ 70

Query: 66  LVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
           LVK NSIQG K  ++D+VYTPWANLKKTA M+ GQV +HN +
Sbjct: 71  LVKQNSIQGCKEASVDIVYTPWANLKKTAGMEAGQVLYHNER 112

Dictyostelium discoideum (taxid: 44689)

>sp|P40206|JLP2_YEAST Protein JLP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JLP2 PE=1 SV=2

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 3/100 (3%)

Query: 7   YTIFMGLDKYENEELIKYGFPE--DIWFHVDKMSSAHVYLRLHKGQ-TIDDISEGVLEDC 63
           Y I MG DK+EN+ LIK+ + E   +WFH DK SS HVYL+L   + TIDDI + V+ DC
Sbjct: 16  YQIVMGKDKFENDLLIKWSYRELNYVWFHADKYSSGHVYLKLRPNEKTIDDIPQEVICDC 75

Query: 64  AQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGF 103
            QL K+ SIQGNK+    ++ TPW NL+K   M+ G+V F
Sbjct: 76  LQLCKSESIQGNKMPQCTILITPWHNLRKNRYMNPGEVSF 115

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
224143008	216	predicted protein [Populus trichocarpa]	1.0	0.5	0.972	8e-59
255551042	215	Coiled-coil domain-containing protein, p	1.0	0.502	0.953	6e-58
359806270	215	uncharacterized protein LOC100802228 [Gl	1.0	0.502	0.935	1e-57
224092326	215	predicted protein [Populus trichocarpa]	1.0	0.502	0.962	1e-57
15239074	215	uncharacterized protein [Arabidopsis tha	1.0	0.502	0.916	8e-57
334187621	214	uncharacterized protein [Arabidopsis tha	1.0	0.504	0.916	8e-57
449437028	215	PREDICTED: coiled-coil domain-containing	1.0	0.502	0.935	2e-56
449523249	215	PREDICTED: coiled-coil domain-containing	1.0	0.502	0.935	2e-56
21593571	215	unknown [Arabidopsis thaliana]	1.0	0.502	0.907	3e-56
225430019	215	PREDICTED: coiled-coil domain-containing	1.0	0.502	0.925	4e-56

>gi|224143008|ref|XP_002324816.1| predicted protein [Populus trichocarpa] gi|222866250|gb|EEF03381.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 105/108 (97%), Positives = 106/108 (98%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVY+RLHKGQTIDDISEGVL
Sbjct: 8   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDDISEGVL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDC QLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHN KM
Sbjct: 68  EDCVQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNSKM 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551042|ref|XP_002516569.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223544389|gb|EEF45910.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  227 bits (579), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/108 (95%), Positives = 106/108 (98%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RPE GDYTIFMGLDKYENEELI+YGFPEDIWFHVDKMSSAHVYLRL+KGQTIDDISEG+L
Sbjct: 8   RPEVGDYTIFMGLDKYENEELIRYGFPEDIWFHVDKMSSAHVYLRLNKGQTIDDISEGLL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHN KM
Sbjct: 68  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNSKM 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806270|ref|NP_001241216.1| uncharacterized protein LOC100802228 [Glycine max] gi|255637408|gb|ACU19032.1| unknown [Glycine max]

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/108 (93%), Positives = 107/108 (99%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RPEAGD+TIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVY+RLHKGQTIDD+SEG+L
Sbjct: 8   RPEAGDFTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDDMSEGLL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNN+DVVYTPW+NLKKTASMDVGQVGFHN KM
Sbjct: 68  EDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKM 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092326|ref|XP_002309559.1| predicted protein [Populus trichocarpa] gi|222855535|gb|EEE93082.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/108 (96%), Positives = 105/108 (97%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RPEAGDYTIFMGLDK+ENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTID ISEGVL
Sbjct: 8   RPEAGDYTIFMGLDKHENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDGISEGVL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDC QLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHN KM
Sbjct: 68  EDCVQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNSKM 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239074|ref|NP_196711.1| uncharacterized protein [Arabidopsis thaliana] gi|297807187|ref|XP_002871477.1| hypothetical protein ARALYDRAFT_909113 [Arabidopsis lyrata subsp. lyrata] gi|7573407|emb|CAB87710.1| putative protein [Arabidopsis thaliana] gi|23297161|gb|AAN13108.1| unknown protein [Arabidopsis thaliana] gi|297317314|gb|EFH47736.1| hypothetical protein ARALYDRAFT_909113 [Arabidopsis lyrata subsp. lyrata] gi|332004304|gb|AED91687.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 99/108 (91%), Positives = 106/108 (98%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RP+AGDYTIFMGLDK+ENEELIKYGFPED+WFHVDKMSSAHVYLRLH+GQ+ DDISEGVL
Sbjct: 8   RPDAGDYTIFMGLDKFENEELIKYGFPEDVWFHVDKMSSAHVYLRLHRGQSFDDISEGVL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNN+DVVYTPW+NLKKTASMDVGQVGFHN KM
Sbjct: 68  EDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKM 115

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187621|ref|NP_001190291.1| uncharacterized protein [Arabidopsis thaliana] gi|332004305|gb|AED91688.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 99/108 (91%), Positives = 106/108 (98%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RP+AGDYTIFMGLDK+ENEELIKYGFPED+WFHVDKMSSAHVYLRLH+GQ+ DDISEGVL
Sbjct: 8   RPDAGDYTIFMGLDKFENEELIKYGFPEDVWFHVDKMSSAHVYLRLHRGQSFDDISEGVL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNN+DVVYTPW+NLKKTASMDVGQVGFHN KM
Sbjct: 68  EDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKM 115

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437028|ref|XP_004136294.1| PREDICTED: coiled-coil domain-containing protein 25-like [Cucumis sativus]

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/108 (93%), Positives = 105/108 (97%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RP+ GDYTIFMGLDKYENEELIKYGF EDIWFHVDKMSSAHVY+RL KGQTIDDISEG+L
Sbjct: 8   RPDVGDYTIFMGLDKYENEELIKYGFIEDIWFHVDKMSSAHVYVRLQKGQTIDDISEGLL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNNIDVVYTPW+NLKKTASMDVGQVGFHNPKM
Sbjct: 68  EDCAQLVKANSIQGNKVNNIDVVYTPWSNLKKTASMDVGQVGFHNPKM 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523249|ref|XP_004168636.1| PREDICTED: coiled-coil domain-containing protein 25-like [Cucumis sativus]

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/108 (93%), Positives = 105/108 (97%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RP+ GDYTIFMGLDKYENEELIKYGF EDIWFHVDKMSSAHVY+RL KGQTIDDISEG+L
Sbjct: 8   RPDVGDYTIFMGLDKYENEELIKYGFIEDIWFHVDKMSSAHVYVRLQKGQTIDDISEGLL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNNIDVVYTPW+NLKKTASMDVGQVGFHNPKM
Sbjct: 68  EDCAQLVKANSIQGNKVNNIDVVYTPWSNLKKTASMDVGQVGFHNPKM 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593571|gb|AAM65538.1| unknown [Arabidopsis thaliana]

 Score =  221 bits (564), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/108 (90%), Positives = 105/108 (97%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RP+AGDYTIFMGLDK+ENEELIKYGFPED+WFHVDKMSSAHVYLRLH+GQ+ DDISEGVL
Sbjct: 8   RPDAGDYTIFMGLDKFENEELIKYGFPEDVWFHVDKMSSAHVYLRLHRGQSFDDISEGVL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNN+DVVYTPW+NLKKTASMDVGQVGFHN  M
Sbjct: 68  EDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSNM 115

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430019|ref|XP_002284173.1| PREDICTED: coiled-coil domain-containing protein 25-like [Vitis vinifera]

 Score =  221 bits (563), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 105/108 (97%)

Query: 1   RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
           RPEA DYTIFMGLDK+ENEELIKYGFPEDIWFHVDKMSSAHVY+RLHKGQTIDDISEG+L
Sbjct: 8   RPEAADYTIFMGLDKHENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDDISEGLL 67

Query: 61  EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
           EDCAQLVKANSIQGNKVNN+DVVYTPW NLKKTASMDVGQVGF+N KM
Sbjct: 68  EDCAQLVKANSIQGNKVNNVDVVYTPWHNLKKTASMDVGQVGFYNSKM 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2144286	215	AT5G11500 "AT5G11500" [Arabido	1.0	0.502	0.916	4.9e-53
MGI|MGI:1914429	208	Ccdc25 "coiled-coil domain con	0.935	0.485	0.772	1.2e-40
ZFIN|ZDB-GENE-040426-1389	207	ccdc25 "coiled-coil domain con	0.935	0.487	0.752	1.1e-39
DICTYBASE|DDB_G0269786	206	ccdc25 "coiled-coil domain-con	0.944	0.495	0.647	3.1e-35
FB|FBgn0029929	209	CG4593 [Drosophila melanogaste	0.916	0.473	0.707	3.1e-35
ASPGD|ASPL0000011843	220	AN3771 [Emericella nidulans (t	0.925	0.454	0.588	3e-30
CGD|CAL0001251	227	orf19.1083 [Candida albicans (	0.981	0.466	0.513	6.6e-26
UNIPROTKB|Q59QX6	227	CaO19.1083 "Conserved coiled c	0.981	0.466	0.513	6.6e-26
WB|WBGene00023423	140	F43C1.7 [Caenorhabditis elegan	0.898	0.692	0.577	2.9e-25
SGD|S000004739	208	JLP2 "Protein of unknown funct	0.898	0.466	0.51	4.3e-22

TAIR|locus:2144286 AT5G11500 "AT5G11500" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 99/108 (91%), Positives = 106/108 (98%)

Query:     1 RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVL 60
             RP+AGDYTIFMGLDK+ENEELIKYGFPED+WFHVDKMSSAHVYLRLH+GQ+ DDISEGVL
Sbjct:     8 RPDAGDYTIFMGLDKFENEELIKYGFPEDVWFHVDKMSSAHVYLRLHRGQSFDDISEGVL 67

Query:    61 EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
             EDCAQLVKANSIQGNKVNN+DVVYTPW+NLKKTASMDVGQVGFHN KM
Sbjct:    68 EDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKM 115

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

MGI|MGI:1914429 Ccdc25 "coiled-coil domain containing 25" [Mus musculus (taxid:10090)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 78/101 (77%), Positives = 90/101 (89%)

Query:     7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
             YTI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRL KG+ I+DI + VL DCA L
Sbjct:    15 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKGEKIEDIPKEVLMDCAHL 74

Query:    67 VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
             VKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K
Sbjct:    75 VKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1389 ccdc25 "coiled-coil domain containing 25" [Danio rerio (taxid:7955)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 76/101 (75%), Positives = 89/101 (88%)

Query:     7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
             +TI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLR+ KG TIDDI + VL DC QL
Sbjct:    14 HTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGTTIDDIPKEVLIDCVQL 73

Query:    67 VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
             VK NSIQG K+NNI++VYTPW+NLKKTA MD+GQ+GFH  K
Sbjct:    74 VKNNSIQGCKMNNINIVYTPWSNLKKTADMDIGQIGFHRQK 114

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0269786 ccdc25 "coiled-coil domain-containing protein 25" [Dictyostelium discoideum (taxid:44689)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 66/102 (64%), Positives = 85/102 (83%)

Query:     6 DYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQ 65
             +Y  +MG+DK+ENE+LIKYG+PED+WFHV+ +SSAHVYLRL KG+T +DI   +LE+C Q
Sbjct:    11 EYICYMGIDKFENEDLIKYGWPEDVWFHVNDLSSAHVYLRLRKGETWNDIPANILEECCQ 70

Query:    66 LVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
             LVK NSIQG K  ++D+VYTPWANLKKTA M+ GQV +HN +
Sbjct:    71 LVKQNSIQGCKEASVDIVYTPWANLKKTAGMEAGQVLYHNER 112

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0029929 CG4593 [Drosophila melanogaster (taxid:7227)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 70/99 (70%), Positives = 82/99 (82%)

Query:     9 IFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVK 68
             ++MG DK+ENEELI++G+PED+WFHV  +SSAHVYLRL KGQTIDDI   VL D AQL K
Sbjct:    16 LYMGRDKHENEELIRWGWPEDVWFHVHDLSSAHVYLRLRKGQTIDDIPTDVLVDAAQLCK 75

Query:    69 ANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
             ANSIQGNKVNN++VVYT W NLKKT  M+ GQV +HN K
Sbjct:    76 ANSIQGNKVNNLEVVYTMWENLKKTPDMEPGQVAYHNEK 114

GO:0022008 "neurogenesis" evidence=IMP

ASPGD|ASPL0000011843 AN3771 [Emericella nidulans (taxid:162425)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 63/107 (58%), Positives = 80/107 (74%)

Query:     9 IFMGLDKYENEELIKYGFPEDIW-------FHVDKMSSAHVYLRLHKGQTIDDISEGVLE 61
             I+MG DK+ENE+LIKYG  +D+W       FHVD +SSAHVY+RL  G++ D+I + +L 
Sbjct:    16 IYMGKDKFENEDLIKYGLEKDVWYGFPKSAFHVDNLSSAHVYVRLRDGESWDNIPQELLV 75

Query:    62 DCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
             DCAQL KANSI+GNK +NI V+YTPW+NL K  SM  GQV FHN K+
Sbjct:    76 DCAQLTKANSIEGNKKDNITVIYTPWSNLMKDGSMATGQVSFHNHKL 122

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0001251 orf19.1083 [Candida albicans (taxid:5476)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 58/113 (51%), Positives = 77/113 (68%)

Query:     3 EAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTID-------DI 55
             +A + TI+MG DK EN+ LIK+  P++IWFHVDK+SSAH+YL+L K Q  +        I
Sbjct:    25 QADEATIYMGRDKVENDPLIKHSHPKNIWFHVDKLSSAHIYLQLTKDQIKNFKSFESFQI 84

Query:    56 SEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
              EG+L    QL KANSI+GNK+NN+ ++YTP  NL    SMD+G V F N K+
Sbjct:    85 DEGLLNQLGQLTKANSIKGNKLNNVSIIYTPVENLHTDGSMDIGTVTFKNNKL 137

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59QX6 CaO19.1083 "Conserved coiled coil protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 58/113 (51%), Positives = 77/113 (68%)

Query:     3 EAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTID-------DI 55
             +A + TI+MG DK EN+ LIK+  P++IWFHVDK+SSAH+YL+L K Q  +        I
Sbjct:    25 QADEATIYMGRDKVENDPLIKHSHPKNIWFHVDKLSSAHIYLQLTKDQIKNFKSFESFQI 84

Query:    56 SEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKM 108
              EG+L    QL KANSI+GNK+NN+ ++YTP  NL    SMD+G V F N K+
Sbjct:    85 DEGLLNQLGQLTKANSIKGNKLNNVSIIYTPVENLHTDGSMDIGTVTFKNNKL 137

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00023423 F43C1.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 56/97 (57%), Positives = 70/97 (72%)

Query:     9 IFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVK 68
             IFMG  + ENE+L K G P D+WFHVDK+SSAHVYL+L  G TID I E +LE+C QLVK
Sbjct:    16 IFMGEHQVENEKLFKCGDPGDVWFHVDKVSSAHVYLQLPSGITIDTIPEELLEECCQLVK 75

Query:    69 ANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHN 105
              NSIQG K+  ++V YT   NLKK   M  G++GF++
Sbjct:    76 KNSIQGVKMEKVEVNYTLKENLKKVKGMQTGEIGFYD 112

GO:0040010 "positive regulation of growth rate" evidence=IMP

SGD|S000004739 JLP2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 51/100 (51%), Positives = 67/100 (67%)

Query:     7 YTIFMGLDKYENEELIKYGFPE--DIWFHVDKMSSAHVYLRLHKGQ-TIDDISEGVLEDC 63
             Y I MG DK+EN+ LIK+ + E   +WFH DK SS HVYL+L   + TIDDI + V+ DC
Sbjct:    16 YQIVMGKDKFENDLLIKWSYRELNYVWFHADKYSSGHVYLKLRPNEKTIDDIPQEVICDC 75

Query:    64 AQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGF 103
              QL K+ SIQGNK+    ++ TPW NL+K   M+ G+V F
Sbjct:    76 LQLCKSESIQGNKMPQCTILITPWHNLRKNRYMNPGEVSF 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108       108   0.00091  102 3  11 22  0.47    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  131 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.94u 0.09s 12.03t   Elapsed:  00:00:01
  Total cpu time:  11.94u 0.09s 12.03t   Elapsed:  00:00:01
  Start:  Sat May 11 04:32:02 2013   End:  Sat May 11 04:32:03 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZX8	CCD25_BOVIN	No assigned EC number	0.7596	0.9629	0.5	yes	no
Q7T312	CCD25_DANRE	No assigned EC number	0.7524	0.9351	0.4879	yes	no
Q78PG9	CCD25_MOUSE	No assigned EC number	0.75	0.9629	0.5	yes	no
Q86WR0	CCD25_HUMAN	No assigned EC number	0.7722	0.9351	0.4855	yes	no
Q6GLE1	CCD25_XENTR	No assigned EC number	0.7920	0.9351	0.4902	yes	no
Q5R9S1	CCD25_PONAB	No assigned EC number	0.7722	0.9351	0.4855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
pfam05670	90	pfam05670, DUF814, Domain of unknown function (DUF	2e-29
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	4e-06

>gnl|CDD|218683 pfam05670, DUF814, Domain of unknown function (DUF814)

 Score =  100 bits (252), Expect = 2e-29
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 5  GDYTIFMGLDKYENEEL-IKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDC 63
          G + I  G +  +NEEL  KY  P D+WFH D +  +HV ++    +  +D     +++ 
Sbjct: 6  GGFLIIGGRNAKQNEELVKKYAEPNDLWFHADDIPGSHVVIKTQGNEVPED----TIQEA 61

Query: 64 AQLVKANSIQGNKVNNIDVVYTPWANLKK 92
          AQL  + S      NN+ V YT    LKK
Sbjct: 62 AQLAASYSKAWKAGNNVPVDYTSGKYLKK 90

This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from B. subtilis yloA, where the N-terminal region is involved in this activity. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important. Length = 90

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 7   YTIFMGLDKYENEELI-KYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQ 65
           + +  G +  +NEEL+ KY   +D+WFH D +  +HV ++        + SE  + + AQ
Sbjct: 450 FLVIGGRNAKQNEELVKKYAEKDDLWFHADDIPGSHVVIKTEG----KEPSEETILEAAQ 505

Query: 66  LVKANSIQGNKVNNIDVVYTPWANLKKT 93
           L  + S +  K   + V YT    ++  
Sbjct: 506 LAASYS-KAWKSGLVPVDYTWVKPVQVP 532

Length = 564

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
PF05670	90	DUF814: Domain of unknown function (DUF814); Inter	100.0
COG1293	564	Predicted RNA-binding protein homologous to eukary	99.97
KOG3272	207	consensus Predicted coiled-coil protein [General f	99.85
KOG2030	911	consensus Predicted RNA-binding protein [General f	99.83
KOG0407	139	consensus 40S ribosomal protein S14 [Translation,	85.19

>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity

Probab=100.00  E-value=2.8e-34  Score=188.71  Aligned_cols=87  Identities=36%  Similarity=0.543  Sum_probs=79.1

Q ss_pred             CccCCeEEEEeCChHHHHHH-HHhcCCCceEEeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccce
Q 039507            2 PEAGDYTIFMGLDKYENEEL-IKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNI   80 (108)
Q Consensus         2 ~s~~g~~i~vGrn~~eNe~L-~k~~~~~D~w~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~v   80 (108)
                      +|++|++|+||||++|||.| +++++++|||||++++||||||||++.+    +.++++|++||.||++||+.++...++
T Consensus         3 ~s~~g~~i~vGrn~~eNe~L~~k~~~~~D~wfH~~~~pg~hvil~~~~~----~~~~~~l~~AA~laa~~Ska~~~~~~v   78 (90)
T PF05670_consen    3 ISSDGFKIIVGRNAKENEMLTKKYARPNDLWFHADDFPGPHVILRNNPG----DEPPPTLQEAAQLAASYSKAWKKGEKV   78 (90)
T ss_pred             EecCCeEEEEeCCHHHHHHHHHHhhhhcceeEeccCCCCCEEEEECCCC----ccchHHHHHHHHHHHHhCHhhccCCCe
Confidence            68999999999999999999 8999999999999999999999999865    344459999999999999326778889


Q ss_pred             EEEEEecCceec
Q 039507           81 DVVYTPWANLKK   92 (108)
Q Consensus        81 ~V~yt~~k~V~k   92 (108)
                      +|+||++++|+|
T Consensus        79 ~V~yt~~k~v~K   90 (90)
T PF05670_consen   79 EVDYTQGKYVKK   90 (90)
T ss_pred             EEEEeehHhccC
Confidence            999999999987

This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.

>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

Probab=99.97  E-value=3.8e-31  Score=219.84  Aligned_cols=102  Identities=26%  Similarity=0.410  Sum_probs=96.9

Q ss_pred             CccCCeEEEEeCChHHHHHH-HHhcCCCceEEeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccce
Q 039507            2 PEAGDYTIFMGLDKYENEEL-IKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNI   80 (108)
Q Consensus         2 ~s~~g~~i~vGrn~~eNe~L-~k~~~~~D~w~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~v   80 (108)
                      +|++|++|++|||+.|||.| .++++++|+|||++++|||||||++++.    ++++++|.+||.|||+|| ++|.++.+
T Consensus       445 ~ss~Gf~vi~Grna~qNe~l~~k~~~~~DlwfHa~~~~gshvvik~~~~----~~~e~ti~eAA~~Aa~~S-ka~~~~~v  519 (564)
T COG1293         445 VSSDGFLVIGGRNAKQNEELVKKYAEKDDLWFHADDIPGSHVVIKTEGK----EPSEETILEAAQLAASYS-KAWKSGLV  519 (564)
T ss_pred             eccCCeEEEEecCcccchHHHHhhcccCcEEEEccCCCCCeEEEeCCCC----CCChHHHHHHHHHHHHhc-hHhhcCCC
Confidence            68999999999999999999 8999999999999999999999998632    899999999999999999 59999999


Q ss_pred             EEEEEecCceecCCCCCcceEEEecCCC
Q 039507           81 DVVYTPWANLKKTASMDVGQVGFHNPKM  108 (108)
Q Consensus        81 ~V~yt~~k~V~k~~~~~~G~V~~~~~k~  108 (108)
                      +|+||.+++|.++++++||+|+|++.+|
T Consensus       520 ~vd~t~vk~vqv~K~a~~G~vl~~g~~~  547 (564)
T COG1293         520 PVDYTWVKPVQVPKGAKSGEVLYKGQKT  547 (564)
T ss_pred             ceEEEEEcccccCCCCCCceEEecCcEE
Confidence            9999999999999999999999998875

>KOG3272 consensus Predicted coiled-coil protein [General function prediction only]

Probab=99.85  E-value=3.1e-21  Score=141.41  Aligned_cols=106  Identities=77%  Similarity=1.246  Sum_probs=99.9

Q ss_pred             ccCCeEEEEeCChHHHHHHHHhcCCCceEEeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccceEE
Q 039507            3 EAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDV   82 (108)
Q Consensus         3 s~~g~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~v~V   82 (108)
                      +...+.|++|++..+|+.|+++..++|.|||+.+..+|||+|+..++++++++|++.|.+||+||...|-.+.+.++|+|
T Consensus        10 t~~~~~i~mg~dk~en~~lIk~g~~e~Vwfhv~~~sS~hvyl~l~~~qtiddip~~vL~DC~QLvKaNSIQG~Kmnnv~V   89 (207)
T KOG3272|consen   10 TEPPYMIYMGKDKFENEELIKWGWPEDVWFHVDKLSSAHVYLRLREGQTIDDIPEFVLEDCAQLVKANSIQGNKMNNVEV   89 (207)
T ss_pred             CCCCeeEEEeecccchhHHHHcCCccceEEEeecccccceeeeecCCCCcccccHHHHHHHHHHHHhcccccccccceeE
Confidence            44589999999999999999999999999999999999999999998889999999999999999999976778999999


Q ss_pred             EEEecCceecCCCCCcceEEEecCCC
Q 039507           83 VYTPWANLKKTASMDVGQVGFHNPKM  108 (108)
Q Consensus        83 ~yt~~k~V~k~~~~~~G~V~~~~~k~  108 (108)
                      .||.+.|++|.+++.+|+|.++..|+
T Consensus        90 vYT~w~NLKKt~~M~~Gqv~fh~~k~  115 (207)
T KOG3272|consen   90 VYTPWSNLKKTADMDVGQVGFHSTKQ  115 (207)
T ss_pred             EechhHhhcccCCCCcccccchhhhh
Confidence            99999999999999999999987663

>KOG2030 consensus Predicted RNA-binding protein [General function prediction only]

Probab=99.83  E-value=1.8e-20  Score=159.08  Aligned_cols=101  Identities=24%  Similarity=0.318  Sum_probs=86.6

Q ss_pred             CccCCeEEEEeCChHHHHHH-HHhcCCCceEEeecCCCcc-EEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccc
Q 039507            2 PEAGDYTIFMGLDKYENEEL-IKYGFPEDIWFHVDKMSSA-HVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNN   79 (108)
Q Consensus         2 ~s~~g~~i~vGrn~~eNe~L-~k~~~~~D~w~H~~~~pG~-hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~   79 (108)
                      |||+||+|+.|||++|||.| .+|++|+|||||++ ++|+ ||||+|++.+   ++|+.+|++||.+|.+|| +||...-
T Consensus       500 iSSEg~LVi~GrdaqQnEllvkky~~~~DiY~had-~~gaSsviIkN~~~~---eipp~TL~eAg~ma~~~S-~aWdakv  574 (911)
T KOG2030|consen  500 ISSEGYLVIGGRDAQQNELLVKKYLEPGDIYVHAD-LHGASSVIIKNPPKT---EIPPKTLEEAGSMALCYS-KAWDAKV  574 (911)
T ss_pred             EecCcEEEEcCCChhhhhHHHHhhCCCCCeEEecc-cCCCceEEEeCCCCC---CCChhhHHHHHHHHhHHh-hhhcccc
Confidence            79999999999999999999 69999999999995 6655 9999997765   999999999999999999 5975433


Q ss_pred             e-EEEEEecCceecCCC----CCcceEEEecCC
Q 039507           80 I-DVVYTPWANLKKTAS----MDVGQVGFHNPK  107 (108)
Q Consensus        80 v-~V~yt~~k~V~k~~~----~~~G~V~~~~~k  107 (108)
                      | ++-|+..++|+|..+    .+-|.+.+++.|
T Consensus       575 vssaWwv~~dqVSKtaptgeyL~~GSFmIrgkk  607 (911)
T KOG2030|consen  575 VSSAWWVYPDQVSKTAPTGEYLPTGSFMIRGKK  607 (911)
T ss_pred             cccceEEecccccccCCCCccccccceEEeccc
Confidence            2 344999999999766    577888887765

>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

Probab=85.19  E-value=0.79  Score=31.70  Aligned_cols=61  Identities=25%  Similarity=0.280  Sum_probs=44.3

Q ss_pred             EeCChHHHHHHH----HhcCCCceEEeecCCCccEEEEEcCCCC----CCCCCCHHHHHHHHHHHHhhc
Q 039507           11 MGLDKYENEELI----KYGFPEDIWFHVDKMSSAHVYLRLHKGQ----TIDDISEGVLEDCAQLVKANS   71 (108)
Q Consensus        11 vGrn~~eNe~L~----k~~~~~D~w~H~~~~pG~hviir~~~~~----~~~~~~~~~l~~AA~laa~yS   71 (108)
                      +|--.++++.++    -++..+|-|+|+-|+.|.-.|+|-..+.    .-+|-++-.-+.||+=+|.-+
T Consensus         5 lg~q~~e~~~vfgvahi~asfndtfvhitdlsg~eti~rvtggmkvkadrdesspyaamlaaqdva~kc   73 (139)
T KOG0407|consen    5 LGPQVREGEQVFGVAHIFASFNDTFVHVTDLSGKETIVRVTGGMKVKADRDESSPYAAMLAAQDVAAKC   73 (139)
T ss_pred             ccchhcccceeeeEEEEEeecccceEEEeccCCceEEEEecCCeEEecccccCChHHHHHHHHHHHHHH
Confidence            455667778775    3678999999999999999999976543    112556666666776666655

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00