Citrus Sinensis ID: 039537

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccEEccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEcccccHHHHHHHHcccccccHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEEEEHEcHHHHHHHHccccccccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MKELLEkhgkthfngclpaydgrkgfytagalpftskdfniklidrdesgdikrerEFKVSVKLASRADINHLRQFLQcksreaphdIIQVLDVVLRESPSKK
Flexible Loop (DISEMBL)
MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALpftskdfniklidrdesgdikrerefkvsvklasradINHLRQFLqcksreaphDIIQVLdvvlrespskk
Low Complexity Region (SEG)
MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK
Disordered region (IsUnstruct)
**********THFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRD********REFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVL*******
Disordered Region (DISOPRED)
MKELLE*HGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKL**************FKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESP***
Disordered Region (DISEMBL)
MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK
Disordered Region (DISPRO)
MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q851R2	1058	Protein argonaute MEL1 OS	yes	no	0.980	0.095	0.544	2e-27
O04379	1048	Protein argonaute 1 OS=Ar	yes	no	1.0	0.098	0.519	1e-25
Q5Z5B2	1038	Protein argonaute 1D OS=O	no	no	1.0	0.099	0.5	1e-24
Q6K972	1011	Protein argonaute 1C OS=O	no	no	1.0	0.101	0.509	3e-24
Q6EU14	1082	Protein argonaute 1A OS=O	no	no	0.980	0.093	0.481	1e-23
Q9SJK3	997	Protein argonaute 5 OS=Ar	no	no	0.980	0.101	0.514	3e-23
Q69VD5	979	Protein argonaute PNH1 OS	no	no	1.0	0.105	0.471	3e-23
Q7XSA2	1118	Protein argonaute 1B OS=O	no	no	1.0	0.092	0.481	1e-22
Q852N2	1192	Protein argonaute 13 OS=O	no	no	0.873	0.075	0.488	7e-21
Q9XGW1	988	Protein argonaute 10 OS=A	no	no	1.0	0.104	0.438	2e-20

>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 76/101 (75%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           + EL++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++    + ERE+K+
Sbjct: 249 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 308

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
           ++++A R D+ HL+QFL  + R+ P + IQVLDVVLRESPS
Sbjct: 309 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPS 349

Essential for the progression of premeiotic mitosis and meiosis during sporogenesis. Regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing. May be involved in histone H3 'Lys-9' demethylation in the pericentromeric region.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 75/104 (72%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRD-ESGDIKREREFK 59
           MK+L++ +  +H    LPAYDGRK  YTAG LPF SK+F I L+D +  +G  +REREFK
Sbjct: 229 MKQLVDNYRDSHLGSRLPAYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFK 288

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V +KL +RAD++HL  FL+ K  +AP + +QVLD+VLRE P+ +
Sbjct: 289 VVIKLVARADLHHLGMFLEGKQSDAPQEALQVLDIVLRELPTSR 332

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGDIKREREFK 59
           M+EL+  H  ++  G LPAYDGRK  YTAG LPFTSK+F I L++ D+ SG  +R++ + 
Sbjct: 221 MEELVRLHKMSYLGGRLPAYDGRKSLYTAGPLPFTSKEFRISLLEEDDGSGSERRQKTYN 280

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V +K A+RAD++ L QFL  +  EAP + +QVLD+VLRE P+ +
Sbjct: 281 VVIKFAARADLHRLEQFLAGRQAEAPQEALQVLDIVLRELPTAR 324

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGDIKREREFK 59
           +KEL+  +  ++  G LPAYDGRK  YTAG LPFTS++F I L+D D+ SG  +R+R F+
Sbjct: 193 IKELVNLYKASYLGGRLPAYDGRKSLYTAGPLPFTSQEFQITLLDDDDGSGSERRQRTFR 252

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V +K A+RAD++ L  FL  +  EAP + +QVLD+VLRE PS +
Sbjct: 253 VVIKFAARADLHRLELFLAGRHAEAPQEALQVLDIVLRELPSAR 296

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 5/106 (4%)

Query: 3   ELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDES-----GDIKRERE 57
           E++ ++ ++H  G LP YDGRK  YTAG LPFTS+ F++ L D +ES     G  +RER 
Sbjct: 259 EIVTQYRQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQDEEESLAVGQGAQRRERP 318

Query: 58  FKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           FKV +K A+RAD++HL  FL  +  +AP + +QVLD+VLRE P+ +
Sbjct: 319 FKVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTAR 364

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 68/101 (67%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           MK L++ +  +H  G  PAYDGRK  YTAG LPF SK+F + L ++   G   ++R FKV
Sbjct: 197 MKLLVKNYKDSHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSGKDRPFKV 256

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
           +VK  +  D+  L+QFL  K REAP+D IQVLDVVLR+ PS
Sbjct: 257 AVKNVTSTDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPS 297

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 75/104 (72%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGDIKREREFK 59
           M EL+  +  +   G LPAYDGRK  YTAG LPF +++F ++L D D+ +G   RERE++
Sbjct: 174 MSELVRLYHDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDDDDGTGVPPREREYR 233

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V++K A+RAD++HLRQF+  +  +AP + +QVLD+VLRE  +++
Sbjct: 234 VAIKFAARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRR 277

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). Plays a role in the maintenance of the indeterminate state of the stem cells in the shoot apical meristem (SAM). Regulates leaf formation through vascular development and may be involved in determining the central domain of the leaf founder region.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 5/108 (4%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDES-----GDIKRE 55
           M EL+  +  +H  G LPAYDGRK  YTAG LPF S+ F I L D ++S     G  +RE
Sbjct: 294 MFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRE 353

Query: 56  REFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           R F+V +K A+RAD++HL  FL  +  +AP + +QVLD+VLRE P+ +
Sbjct: 354 RLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTR 401

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q852N2|AGO13_ORYSJ Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 64/90 (71%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           + EL++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++    + ERE+K+
Sbjct: 50  LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 109

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQ 90
           ++++A R D  HL+QFL  + R+ P + IQ
Sbjct: 110 TIRIAGRTDFYHLQQFLLGRQRDMPQETIQ 139

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDES--GDIKREREF 58
           + EL+  + ++     LPAYDGRK  YTAG LPFT K+F++K++D D+      KRER +
Sbjct: 178 IAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSY 237

Query: 59  KVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           KV++K  +RA+++HL +FL  K  + P + +Q+LD+VLRE   K+
Sbjct: 238 KVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKR 282

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
224069720	850	argonaute protein group [Populus trichoc	0.990	0.12	0.611	4e-30
326497697	1039	predicted protein [Hordeum vulgare subsp	0.980	0.097	0.524	7e-26
75149521	1058	RecName: Full=Protein argonaute MEL1; Al	0.980	0.095	0.544	9e-26
218193919	1058	hypothetical protein OsI_13926 [Oryza sa	0.980	0.095	0.544	9e-26
125588271	1024	hypothetical protein OsJ_12979 [Oryza sa	0.980	0.098	0.544	1e-25
224120474	1062	argonaute protein group [Populus trichoc	1.0	0.096	0.548	3e-25
84688906	1052	AGO1-1, partial [Nicotiana benthamiana]	1.0	0.097	0.538	3e-25
297852460	1052	hypothetical protein ARALYDRAFT_473977 [	0.980	0.096	0.549	5e-25
255570639	1063	eukaryotic translation initiation factor	1.0	0.096	0.538	5e-25
409127948	1054	AGO1A [Solanum lycopersicum] gi|40989306	1.0	0.097	0.528	7e-25

>gi|224069720|ref|XP_002326400.1| argonaute protein group [Populus trichocarpa] gi|222833593|gb|EEE72070.1| argonaute protein group [Populus trichocarpa]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 81/103 (78%), Gaps = 1/103 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           M+ELL  +  THF    PAYDGRKGFYTAG L FTSKDF + L+D+D+ G +++ER+FKV
Sbjct: 62  MRELLASN-STHFQSRKPAYDGRKGFYTAGPLTFTSKDFVVTLVDKDDQGSVRKERKFKV 120

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           +++LAS+ D+ HL++FLQ + R APHD IQVLDVVLRE PS K
Sbjct: 121 TIRLASKTDLYHLKEFLQGRQRGAPHDTIQVLDVVLREPPSNK 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326497697|dbj|BAK05938.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 77/101 (76%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           + EL++ HGKT   G LPAYDGRK  YTAG+LPF S++F++ L+D ++    + ERE+K+
Sbjct: 227 LSELIKVHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFSVTLVDPEKKDKERAEREYKI 286

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
           ++++A R D+ HL+QFL+ + R+ P + IQVLDVVLRESPS
Sbjct: 287 TIRIAGRTDLYHLQQFLKGRQRDMPQETIQVLDVVLRESPS 327

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75149521|sp|Q851R2.1|MEL1_ORYSJ RecName: Full=Protein argonaute MEL1; AltName: Full=Protein MEIOSIS ARRESTED AT LEPTOTENE 1; Short=OsMEL1 gi|28209520|gb|AAO37538.1| putative argonaute protein [Oryza sativa Japonica Group] gi|108711587|gb|ABF99382.1| Argonaute-like protein At2g27880, putative, expressed [Oryza sativa Japonica Group] gi|157279696|dbj|BAF80153.1| ARGONAUTE family protein [Oryza sativa Japonica Group]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 76/101 (75%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           + EL++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++    + ERE+K+
Sbjct: 249 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 308

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
           ++++A R D+ HL+QFL  + R+ P + IQVLDVVLRESPS
Sbjct: 309 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPS 349

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218193919|gb|EEC76346.1| hypothetical protein OsI_13926 [Oryza sativa Indica Group]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 76/101 (75%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           + EL++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++    + ERE+K+
Sbjct: 249 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 308

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
           ++++A R D+ HL+QFL  + R+ P + IQVLDVVLRESPS
Sbjct: 309 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPS 349

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125588271|gb|EAZ28935.1| hypothetical protein OsJ_12979 [Oryza sativa Japonica Group]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 76/101 (75%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           + EL++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++    + ERE+K+
Sbjct: 214 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 273

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
           ++++A R D+ HL+QFL  + R+ P + IQVLDVVLRESPS
Sbjct: 274 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPS 314

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120474|ref|XP_002318338.1| argonaute protein group [Populus trichocarpa] gi|222859011|gb|EEE96558.1| argonaute protein group [Populus trichocarpa]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 80/104 (76%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGDIKREREFK 59
           M++L++ + ++H    LPAYDGRK  YTAGALPF +KDF I LID D+ SG  +REREFK
Sbjct: 240 MEQLVKLYRESHLGKRLPAYDGRKSLYTAGALPFQAKDFKITLIDDDDGSGGPRREREFK 299

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V++KLA+RAD++HL  FL+ +  +AP + +QVLD+VLRE P+ +
Sbjct: 300 VTIKLAARADLHHLGLFLRGQQADAPQEALQVLDIVLRELPTAR 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84688906|gb|ABC61502.1| AGO1-1, partial [Nicotiana benthamiana]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDES-GDIKREREFK 59
           M++L++ + ++H    LPAYDGRK  YTAG LPF  KDF I LID D+  G  +REREFK
Sbjct: 230 MEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVQKDFKITLIDDDDGPGGARREREFK 289

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V +KLA+RAD++HL  FLQ +  +AP + +QVLD+VLRE P+ +
Sbjct: 290 VVIKLAARADLHHLGMFLQGRQADAPQEALQVLDIVLRELPTSR 333

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852460|ref|XP_002894111.1| hypothetical protein ARALYDRAFT_473977 [Arabidopsis lyrata subsp. lyrata] gi|297339953|gb|EFH70370.1| hypothetical protein ARALYDRAFT_473977 [Arabidopsis lyrata subsp. lyrata]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 77/102 (75%), Gaps = 1/102 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGDIKREREFK 59
           MK+L++ + ++H    LPAYDGRK  YTAG LPFTSK+F I L+D +E +G  +REREFK
Sbjct: 231 MKQLVDSYRESHLGNRLPAYDGRKSLYTAGPLPFTSKEFRINLLDEEEGAGGQRREREFK 290

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
           V +KL +RAD++HL  FL+ K  +AP + +QVLD+VLRE P+
Sbjct: 291 VVIKLVARADLHHLGLFLEGKQPDAPQEALQVLDIVLRELPT 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570639|ref|XP_002526275.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223534406|gb|EEF36112.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 78/104 (75%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGDIKREREFK 59
           M++L++ + ++H    LPAYDGRK  YTAG LPF SK+F I LID D+ SG  +REREF+
Sbjct: 240 MEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFKITLIDEDDGSGGQRREREFR 299

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V +KLA+RAD++HL  FLQ +  +AP + +QVLD+VLRE P+ +
Sbjct: 300 VVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTR 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409127948|gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV46190.1| argonaute1-1, partial [Solanum lycopersicum]

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDES-GDIKREREFK 59
           M++L++ + ++H    LPAYDGRK  YTAG LPF  KDF I L+D D+  G  +REREFK
Sbjct: 232 MEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVQKDFKITLLDDDDGPGGARREREFK 291

Query: 60  VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           V +KLA+RAD++HL  FLQ +  +AP + +QVLD+VLRE P+ +
Sbjct: 292 VVIKLAARADLHHLGMFLQGRQADAPQEALQVLDIVLRELPTSR 335

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
UNIPROTKB|Q851R2	1058	MEL1 "Protein argonaute MEL1"	0.980	0.095	0.544	3.8e-25
UNIPROTKB|Q69VD5	979	PHN1 "Protein argonaute PNH1"	1.0	0.105	0.471	2.4e-21
TAIR|locus:2057851	997	AGO5 "ARGONAUTE 5" [Arabidopsi	0.980	0.101	0.514	3.1e-21
TAIR|locus:2170897	988	AGO10 "ARGONAUTE 10" [Arabidop	0.980	0.102	0.446	2.6e-19
WB|WBGene00000105	1023	alg-1 [Caenorhabditis elegans	0.844	0.085	0.329	2.1e-08
WB|WBGene00000106	910	alg-2 [Caenorhabditis elegans	0.932	0.105	0.31	2.3e-08
UNIPROTKB|F1RSJ1	666	EIF2C2 "Uncharacterized protei	0.941	0.145	0.372	2.3e-07
FB|FBgn0262739	984	AGO1 "Argonaute-1" [Drosophila	0.932	0.097	0.310	3e-07
UNIPROTKB|F1PQZ7	813	EIF2C2 "Uncharacterized protei	0.941	0.119	0.372	3e-07
UNIPROTKB|F1NL39	856	LOC100858102 "Uncharacterized	0.941	0.113	0.343	3.2e-07

UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 298 (110.0 bits), Expect = 3.8e-25, P = 3.8e-25
 Identities = 55/101 (54%), Positives = 76/101 (75%)

Query:     1 MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
             + EL++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++    + ERE+K+
Sbjct:   249 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 308

Query:    61 SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
             ++++A R D+ HL+QFL  + R+ P + IQVLDVVLRESPS
Sbjct:   309 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPS 349

GO:0005730 "nucleolus" evidence=IMP

GO:0005731 "nucleolus organizer region" evidence=IMP

GO:0005737 "cytoplasm" evidence=RCA

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009561 "megagametogenesis" evidence=IMP

GO:0033169 "histone H3-K9 demethylation" evidence=IDA

GO:0035197 "siRNA binding" evidence=ISS

GO:0055046 "microgametogenesis" evidence=IMP

UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 262 (97.3 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 49/104 (47%), Positives = 75/104 (72%)

Query:     1 MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGDIKREREFK 59
             M EL+  +  +   G LPAYDGRK  YTAG LPF +++F ++L D D+ +G   RERE++
Sbjct:   174 MSELVRLYHDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDDDDGTGVPPREREYR 233

Query:    60 VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
             V++K A+RAD++HLRQF+  +  +AP + +QVLD+VLRE  +++
Sbjct:   234 VAIKFAARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRR 277

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006413 "translational initiation" evidence=ISS

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 52/101 (51%), Positives = 68/101 (67%)

Query:     1 MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
             MK L++ +  +H  G  PAYDGRK  YTAG LPF SK+F + L ++   G   ++R FKV
Sbjct:   197 MKLLVKNYKDSHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSGKDRPFKV 256

Query:    61 SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
             +VK  +  D+  L+QFL  K REAP+D IQVLDVVLR+ PS
Sbjct:   257 AVKNVTSTDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPS 297

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 46/103 (44%), Positives = 70/103 (67%)

Query:     3 ELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDES--GDIKREREFKV 60
             EL+  + ++     LPAYDGRK  YTAG LPFT K+F++K++D D+      KRER +KV
Sbjct:   180 ELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSYKV 239

Query:    61 SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
             ++K  +RA+++HL +FL  K  + P + +Q+LD+VLRE   K+
Sbjct:   240 AIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKR 282

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;ISS

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0010586 "miRNA metabolic process" evidence=IMP

GO:0035198 "miRNA binding" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

WB|WBGene00000105 alg-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 141 (54.7 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 31/94 (32%), Positives = 50/94 (53%)

Query:    12 HFNGCLPAYDGRKGFYTAGALPFTSK--DFNIKLIDRDESGDIKREREFKVSVKLASRAD 69
             +F    P YDG++  YT   LP   +  DF++ L      GD   ER+F VS+K   +  
Sbjct:   219 YFTNIRPVYDGKRNMYTREPLPIGRERMDFDVTL-----PGDSAVERQFSVSLKWVGQVS 273

Query:    70 INHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
             ++ L   ++ + R+ P + +Q +DV+LR  PS K
Sbjct:   274 LSTLEDAMEGRVRQVPFEAVQAMDVILRHLPSLK 307

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IGI

GO:0040025 "vulval development" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0035198 "miRNA binding" evidence=IPI

GO:0035068 "micro-ribonucleoprotein complex" evidence=IPI

WB|WBGene00000106 alg-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 140 (54.3 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:     4 LLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVK 63
             L+    K +F    P YDG++  YT   LP  ++  N ++      GD   ER+F V++K
Sbjct:   117 LISSFSK-YFTNIRPVYDGKRNMYTREPLPIGTEPMNFEVT---LPGDSAVERKFSVTMK 172

Query:    64 LASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
                +  ++ L   ++ + R+ PH+ +Q +DV+LR  PS K
Sbjct:   173 WIGQVCLSALDDAMEGRVRQVPHEAVQSIDVILRHLPSLK 212

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0009790 "embryo development" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035198 "miRNA binding" evidence=IPI

GO:0035068 "micro-ribonucleoprotein complex" evidence=IPI

UNIPROTKB|F1RSJ1 EIF2C2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/102 (37%), Positives = 53/102 (51%)

Query:     3 ELLEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVS 61
             E + +H KT  F    P +DGRK  YTA  LP   +D  ++L +    G+ K +R FKVS
Sbjct:     5 EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPI-GRD-KVEL-EVTLPGEGK-DRIFKVS 60

Query:    62 VKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
             +K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct:    61 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 102

GO:0070551 "endoribonuclease activity, cleaving siRNA-paired mRNA" evidence=IEA

GO:0045947 "negative regulation of translational initiation" evidence=IEA

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IEA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035197 "siRNA binding" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0031054 "pre-miRNA processing" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IEA

FB|FBgn0262739 AGO1 "Argonaute-1" [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 32/103 (31%), Positives = 56/103 (54%)

Query:     2 KELLEK--HGKTHFNGCL-PAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREF 58
             +E++E   H  +   G L P +DGR   YT   LP  ++   +++    E  D    R F
Sbjct:   182 REIIETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKD----RIF 237

Query:    59 KVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPS 101
             +V++K  ++  + +L + L+ ++R+ P+D I  LDVV+R  PS
Sbjct:   238 RVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPS 280

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISS

GO:0016442 "RNA-induced silencing complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP

GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=IMP

GO:0016246 "RNA interference" evidence=TAS

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IDA;IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP

GO:0019899 "enzyme binding" evidence=IPI

GO:0035195 "gene silencing by miRNA" evidence=IMP;NAS

GO:0007416 "synapse assembly" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006342 "chromatin silencing" evidence=IMP

GO:0007367 "segment polarity determination" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0006402 "mRNA catabolic process" evidence=IGI;IMP

GO:0035198 "miRNA binding" evidence=IDA

GO:0036099 "female germ-line stem cell maintenance" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0030727 "germarium-derived female germ-line cyst formation" evidence=IMP

GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=IMP

UNIPROTKB|F1PQZ7 EIF2C2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 129 (50.5 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 38/102 (37%), Positives = 53/102 (51%)

Query:     3 ELLEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVS 61
             E + +H KT  F    P +DGRK  YTA  LP   +D  ++L +    G+ K +R FKVS
Sbjct:    30 EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPI-GRD-KVEL-EVTLPGEGK-DRIFKVS 85

Query:    62 VKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
             +K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct:    86 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 127

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NL39 LOC100858102 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 35/102 (34%), Positives = 49/102 (48%)

Query:     3 ELLEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVS 61
             E + +H KT  F    P +DGRK  YT  ALP  +    +++    E  D    R FKV+
Sbjct:    73 EHMVQHFKTQIFGDRKPVFDGRKNLYTVMALPIVTDKVELEVTLPGEGKD----RIFKVA 128

Query:    62 VKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
             +K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct:   129 IKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 170

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0031054 "pre-miRNA processing" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0035197 "siRNA binding" evidence=IEA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IEA

GO:0045947 "negative regulation of translational initiation" evidence=IEA

GO:0070551 "endoribonuclease activity, cleaving siRNA-paired mRNA" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
PLN03202	900	PLN03202, PLN03202, protein argonaute; Provisional	3e-08

>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 22/107 (20%)

Query: 19  AYDGRKGFYTAGALPFTSKDFNIKLID----------------RDESGDIKRER------ 56
           AYDG K  +T GALP    +F + L D                    GD KR R      
Sbjct: 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSK 165

Query: 57  EFKVSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
            FKV +  A++  +  +   L+ +  E   D ++VLD++LR+  +K+
Sbjct: 166 TFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQ 212

Length = 900

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PLN03202	900	protein argonaute; Provisional	99.68
KOG1041	876	consensus Translation initiation factor 2C (eIF-2C	98.89
KOG1042	845	consensus Germ-line stem cell division protein Hiw	92.16

>PLN03202 protein argonaute; Provisional

Probab=99.68  E-value=2.4e-17  Score=137.03  Aligned_cols=100  Identities=28%  Similarity=0.500  Sum_probs=81.8

Q ss_pred             hhHHhhhCCccccCccccccCCcceeecCccccccccceEEEeecC------------CCCc----------cceeeeee
Q 039537            2 KELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRD------------ESGD----------IKREREFK   59 (103)
Q Consensus         2 ~~l~~~~~~~~f~~~~~a~Dg~k~l~s~~~Lp~~~~~~~V~l~~~~------------~~~~----------~~~~~~f~   59 (103)
                      .++++++. ..|.+..+||||+++|||+++||++..++.|.+++++            +.++          .++.+.|+
T Consensus        90 ~~~~~~~~-~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (900)
T PLN03202         90 DKVQETYS-SDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFK  168 (900)
T ss_pred             HHHHHhhH-HhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEE
Confidence            45666664 4476778999999999999999986668889887631            1111          12468899


Q ss_pred             EEEEeecccchHHHHHHhchhccCCCcchheeeeehhccCCCC
Q 039537           60 VSVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSK  102 (103)
Q Consensus        60 V~Ik~~~~i~l~~L~~~l~g~~~~~~~~aiqaLdivLR~~ps~  102 (103)
                      |+|+++++|++++|.+||.|.....+.++||||||||||.|+.
T Consensus       169 v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~  211 (900)
T PLN03202        169 VEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAK  211 (900)
T ss_pred             EEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999998888899999999999999874

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=5.7e-10  Score=93.13  Aligned_cols=91  Identities=35%  Similarity=0.502  Sum_probs=70.6

Q ss_pred             HhhhCCccccCccccccCCcceeecCcccc--ccccceEEEeecCCCCccceeeeeeEEEEeecccchHHHHHHhchhcc
Q 039537            5 LEKHGKTHFNGCLPAYDGRKGFYTAGALPF--TSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSR   82 (103)
Q Consensus         5 ~~~~~~~~f~~~~~a~Dg~k~l~s~~~Lp~--~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~L~~~l~g~~~   82 (103)
                      +..+....|+...++|||+++|||..+||.  ....|.+....+.     ..   |+|+|++++.+.+..+..++.++..
T Consensus       103 ~~~~~~~~~~~~~~~YDg~~~lyt~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~ik~~~~~~~~~~~~~~~~~~~  174 (876)
T KOG1041|consen  103 VKNPELFELKSGGPAYDGQKTLYTKLELPEGVVTLDFDVISPKEW-----KK---FKVSIKKVSEVVLTKLNGFIYTRGE  174 (876)
T ss_pred             HhccccccccCCcccccCCceeEeccccccccceEEEEecCCCCC-----cc---eEEEEEecccccccCccccccCccc
Confidence            344444557777888999999999877874  2233444433321     11   9999999999999999999999988


Q ss_pred             CCCcchheeeeehhccCCCCC
Q 039537           83 EAPHDIIQVLDVVLRESPSKK  103 (103)
Q Consensus        83 ~~~~~aiqaLdivLR~~ps~~  103 (103)
                      ..+.+++|+||++||+.|+.+
T Consensus       175 ~~~~~~~~~ld~~~~~~~s~~  195 (876)
T KOG1041|consen  175 NAPRDANQTLDVVLREIATSQ  195 (876)
T ss_pred             cCchhHHHHHHHHHHhhhchh
Confidence            899999999999999999853

>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]

Probab=92.16  E-value=0.049  Score=45.11  Aligned_cols=66  Identities=21%  Similarity=0.345  Sum_probs=44.5

Q ss_pred             CccccCccccccCCcceeecCccccccccceEEEeecCCCCccceeeeeeEEEEeecccchHHHHHHhchhccCCCcchh
Q 039537           10 KTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPHDII   89 (103)
Q Consensus        10 ~~~f~~~~~a~Dg~k~l~s~~~Lp~~~~~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~ai   89 (103)
                      +..+-|...||||.- ||+..++...  . .+-. .     .++....++++|++++++.-            ..| ++|
T Consensus       136 h~~lig~~~~FDG~i-Lfl~~k~eq~--~-tel~-~-----ks~~ge~i~I~ik~~~~~~~------------t~p-~~i  192 (845)
T KOG1042|consen  136 HTDLIGKGYAFDGTI-LFLKEKFEQK--Q-TELV-S-----KSRDGELIKITIKLTNELPS------------TDP-QCI  192 (845)
T ss_pred             hHhhhccceeeccee-ehhhHHHhhh--h-heee-c-----ccCCCceEEEEEEEeccccC------------CCh-hHH
Confidence            345556789999974 6888887531  1 1111 1     12455679999999998752            233 589


Q ss_pred             eeeeehhcc
Q 039537           90 QVLDVVLRE   98 (103)
Q Consensus        90 qaLdivLR~   98 (103)
                      |++|+|||.
T Consensus       193 qv~NlI~RR  201 (845)
T KOG1042|consen  193 QVFNLILRR  201 (845)
T ss_pred             HHHHHHHHH
Confidence            999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
4f3t_A	861	Human Argonaute-2 - Mir-20a Complex Length = 861		2e-08
4ei1_A	859	Crystal Structure Of Human Argonaute2 Length = 859		3e-08

>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 3   ELLEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVS 61
           E + +H KT  F    P +DGRK  YTA  LP       +++    E  D    R FKVS
Sbjct: 78  EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD----RIFKVS 133
Query: 62  VKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           +K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct: 134 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 175

>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 3   ELLEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKVS 61
           E + +H KT  F    P +DGRK  YTA  LP       +++    E  D    R FKVS
Sbjct: 76  EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD----RIFKVS 131
Query: 62  VKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           +K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct: 132 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	6e-20
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	7e-13

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861

 Score = 82.1 bits (202), Expect = 6e-20
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIKREREFKV 60
           ++ +++      F    P +DGRK  YTA  LP       +++    E     ++R FKV
Sbjct: 77  VEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGE----GKDRIFKV 132

Query: 61  SVKLASRADINHLRQFLQCKSREAPHDIIQVLDVVLRESPSKK 103
           S+K  S   +  L   L  +    P + IQ LDVV+R  PS +
Sbjct: 133 SIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR 175

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046

 Score = 62.0 bits (149), Expect = 7e-13
 Identities = 13/129 (10%), Positives = 38/129 (29%), Gaps = 26/129 (20%)

Query: 1   MKELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTS--------------------KDFN 40
           ++ LL++    +      A++G    Y+   L   +                       +
Sbjct: 104 IEALLDEDEILYKYRDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPS 163

Query: 41  IKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQCKSREAPH------DIIQVLDV 94
            K   + +      E   ++++K + +  +  +      +  E         D   +L +
Sbjct: 164 NKASLQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSL 223

Query: 95  VLRESPSKK 103
           +  +  S  
Sbjct: 224 LGAKFMSTD 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	99.76
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	99.37

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A

Probab=99.76  E-value=6.8e-20  Score=150.35  Aligned_cols=94  Identities=33%  Similarity=0.564  Sum_probs=76.3

Q ss_pred             hhHHhhhCCccccCccccccCCcceeecCccccccc--cceEEEeecCCCCccceeeeeeEEEEeecccchHHHHHHhch
Q 039537            2 KELLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSK--DFNIKLIDRDESGDIKREREFKVSVKLASRADINHLRQFLQC   79 (103)
Q Consensus         2 ~~l~~~~~~~~f~~~~~a~Dg~k~l~s~~~Lp~~~~--~~~V~l~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~L~~~l~g   79 (103)
                      ++|+++|+...||+..+||||+++|||+++||+++.  ++.|.++.+      +++++|+|+|+++++|++++|.+||+|
T Consensus        78 ~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~------~~~~~~~V~I~~~~~i~l~~L~~~l~g  151 (861)
T 4f3t_A           78 EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGE------GKDRIFKVSIKWVSCVSLQALHDALSG  151 (861)
T ss_dssp             HHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC-------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCC------CCCcEEEEEEEEeeecCHHHHHHHhcC
Confidence            467778877789998899999999999999998543  344444321      357899999999999999999999999


Q ss_pred             hccCCCcchheeeeehhccCCC
Q 039537           80 KSREAPHDIIQVLDVVLRESPS  101 (103)
Q Consensus        80 ~~~~~~~~aiqaLdivLR~~ps  101 (103)
                      +....+.++||||||||||.|+
T Consensus       152 ~~~~~~~~~iq~Lniilr~~~~  173 (861)
T 4f3t_A          152 RLPSVPFETIQALDVVMRHLPS  173 (861)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHhhcc
Confidence            9888899999999999999875

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}

Probab=99.37  E-value=1.8e-14  Score=120.09  Aligned_cols=99  Identities=11%  Similarity=0.105  Sum_probs=69.0

Q ss_pred             hhHHhhhC-CccccCccccccCCcceeecCccc---cccccceEEEe-----ecCC------------CCccceeeeeeE
Q 039537            2 KELLEKHG-KTHFNGCLPAYDGRKGFYTAGALP---FTSKDFNIKLI-----DRDE------------SGDIKREREFKV   60 (103)
Q Consensus         2 ~~l~~~~~-~~~f~~~~~a~Dg~k~l~s~~~Lp---~~~~~~~V~l~-----~~~~------------~~~~~~~~~f~V   60 (103)
                      ..|+++.. ...|++ .+||||+++|||+.+||   +....+.|.+.     ++++            +.+..++++|+|
T Consensus       105 ~~ll~e~~~~~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  183 (1046)
T 4f1n_A          105 EALLDEDEILYKYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDPELEEMVSQI  183 (1046)
T ss_dssp             HHHHHSCTTTGGGTT-SEEECSSSEEEESSCGGGSTTCTTCCC-------------------------------CGGGGE
T ss_pred             HHHHHhcchhhhcCC-ceeecCccceEECCcCCccccCCCceEEeccccccccCCcccccccccccccccccccCceEEE
Confidence            45666521 122545 59999999999999999   44457888888     4433            123467889999


Q ss_pred             EEEeecccchHHHHHHhchhccCC-----CcchheeeeehhccCCC
Q 039537           61 SVKLASRADINHLRQFLQCKSREA-----PHDIIQVLDVVLRESPS  101 (103)
Q Consensus        61 ~Ik~~~~i~l~~L~~~l~g~~~~~-----~~~aiqaLdivLR~~ps  101 (103)
                      +|+++++|++++|.+||.|+....     +.++||||++||+|.|.
T Consensus       184 ~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~  229 (1046)
T 4f1n_A          184 TLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFM  229 (1046)
T ss_dssp             EEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             EEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhh
Confidence            999999999999999999987653     27899999999998774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00