Citrus Sinensis ID: 039589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFEAQQLAAAVAAKEQQEMLRSYEQQQELVRFNSGFDAPTGFNNQMSGGTMSPSLALGGFDNSYQIQAQQQPAEHHHHHATAHPLQAQLLQQQPPPPPQTQQQQKSPSEEGRSIGGPSC
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHccccccccHcccccccccHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msssnspcaacKFLRRKctqecvfapyfppdqpqkfanvhkVFGASNVAKLLNELATNLREDAVNSLAYEAEarlrdpvygCVGLISILQHRLKQVQSDLYSAKKELAtyigpqammpmlqaqafmpqqhlgnpssstviqhgmvpmmgiptgsshsgqlvirdpqhqhqhNQQQQQMFEAQQLAAAVAAKEQQEMLRSYEQQQELVRfnsgfdaptgfnnqmsggtmspslalggfdnsyqiqaqqqpaehhhhhatahplqaqllqqqpppppqtqqqqkspseegrsiggpsc
Flexible Loop (DISEMBL)
MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFEAQQLAAAVAAKEQQEMLRSYEQQQELVRFNSGFDAPTGFNNQMSGGTMSPSLALGGFDNSYQIQAQQQPAEHHHHHATAHPLQAQLLQQQPPPPPQTqqqqkspseegrsiggpsc
Low Complexity Region (SEG)
MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPqhqhqhnqqqqqmfeaqqlaaavaakeqqeMLRSYEQQQELVRFNSGFDAPTGFNNQMSGGTMSPSLALGGFDNSYQIqaqqqpaehhhhhatahplqaqllqqqpppppqtqqqqKSPSEEGRSIGGPSC
Disordered region (IsUnstruct)
*******CAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAM************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****SP**ACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY******************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
********AACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDP*********************************SYEQQQELVRFNSGFDAPTGFNNQMSGGTMSPSLALGGFDNSYQI******************LQAQLLQQ***************************
Disordered Region (DISPRO)
*****SPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQ***********S*STVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFEAQQLAAAVAAKEQQEMLRSYEQQQELVRFNSGFDAPTGFNNQMSGGTMSPSLALGGFDNSYQIQ*********************L******************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFEAQQLAAAVAAKEQQEMLRSYEQQQELVRFNSGFDAPTGFNNQMSGGTMSPSLALGGFDNSYQIQAQQQPAEHHHHHATAHPLQAQLLQQQPPPPPQTQQQQKSPSEEGRSIGGPSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q9FKZ3	313	LOB domain-containing pro	yes	no	0.739	0.699	0.599	2e-72
O64836	311	LOB domain-containing pro	no	no	0.881	0.839	0.455	3e-55
Q32SG3	260	LOB domain-containing pro	N/A	no	0.405	0.461	0.651	4e-44
A1YKY7	269	Protein IAL1 OS=Zea mays	N/A	no	0.472	0.520	0.561	3e-43
Q8LQH4	269	LOB domain-containing pro	yes	no	0.364	0.401	0.731	4e-42
A2WXT0	269	LOB domain-containing pro	N/A	no	0.364	0.401	0.731	4e-42
O04479	199	LOB domain-containing pro	no	no	0.368	0.547	0.807	7e-42
Q8L8Q3	159	LOB domain-containing pro	no	no	0.368	0.685	0.678	5e-41
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.368	0.586	0.706	6e-41
Q8LBW3	193	LOB domain-containing pro	no	no	0.347	0.533	0.640	3e-35

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/262 (59%), Positives = 180/262 (68%), Gaps = 43/262 (16%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           M+SS+SPCAACKFLRRKCTQECVFAPYFPPDQPQKFA VHKVFGASNVAKLLNELA+N R
Sbjct: 1   MASSSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSL YEAEARLRDPVYGCVGLISILQHRLKQV  DL +AKKELATY+GPQAM+P+L
Sbjct: 61  EDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQAMLPIL 120

Query: 121 QAQAFM---PQQHLGNPSSSTVI---QHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQ 174
           Q   FM   PQ    + SS++V+    H ++PMM IPTG                Q   Q
Sbjct: 121 QPH-FMSLPPQPQRPSSSSASVLTQHHHNLLPMMAIPTG----------------QLYHQ 163

Query: 175 QQQMFEAQQLAAAVAAKEQQEMLRSY-------------EQQQELVRFNSGFDA------ 215
           QQQ     Q  AAVA ++Q EM R+Y             + Q E++RFN+GFD+      
Sbjct: 164 QQQQIFEAQQLAAVAREQQNEMFRAYGGGGGSSSPHHQNQAQAEILRFNNGFDSVPAGSV 223

Query: 216 -PTGFNNQMSGGTMSPSLALGG 236
             TGFN   SGGT    ++LGG
Sbjct: 224 TVTGFNQLSSGGTAVTGMSLGG 245

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.
Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  215 bits (547), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/303 (45%), Positives = 182/303 (60%), Gaps = 42/303 (13%)

Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDA 63
           +++PCAACK LRRKCTQECVFAPYFPP  PQKF  VH+VFGASNV K+LN+L  + RED 
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 64  VNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQ 123
           VNSL YEAEAR+RDP+YGCVGLIS LQ  LK++Q DL +AK+EL  Y+GP A+       
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAV------- 114

Query: 124 AFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQ-LVIRDPQ-----HQHQHNQQQQQ 177
             +P  +L    ++      M+ M G+P G    G+ L+IR+P      H  Q   +Q Q
Sbjct: 115 --IPPPYLPPIGNNPPPNF-MMSMEGMPPGVIPQGEPLMIREPNMSQQHHHQQPQDEQLQ 171

Query: 178 MF--EAQQLAAAVAAK-EQQEMLRSYEQQQELVRFNSGFDAPTGF-----NNQMSGGTMS 229
               +AQ++AA +  + +QQ M   Y         N+G    TGF     N+Q +GG++S
Sbjct: 172 FIASDAQRMAAMMLERGDQQGMFNGYGID------NNGSVTATGFNQMDVNDQGAGGSLS 225

Query: 230 -PSLALGGFDNSYQIQAQQQPAEHHHHHATAHPLQAQLLQQQPPPPPQTQQQQKSPSEEG 288
            PSLALG F ++YQ+       E  H H     LQ QL+ Q   PP Q  Q+Q   +EEG
Sbjct: 226 GPSLALGSFGDAYQMG-----QETEHGHINHDQLQTQLMLQ---PPLQEGQEQ---TEEG 274

Query: 289 RSI 291
           + +
Sbjct: 275 QFL 277

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  178 bits (452), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 97/132 (73%), Gaps = 12/132 (9%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           +  + SPCAACKFLRRKC  +CVFAPYFPPD PQKF +VH+VFGASNV KLLNEL    R
Sbjct: 27  VCGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQR 86

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY---------- 110
           EDAVNSLAYEA+ RLRDPVYGCVG+ISILQH L+Q+Q DL  AK EL+ Y          
Sbjct: 87  EDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASAST 146

Query: 111 --IGPQAMMPML 120
              GPQAM   +
Sbjct: 147 APTGPQAMAEFI 158

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 107/162 (66%), Gaps = 22/162 (13%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           +  + SPCAACKFLRRKC  +CVFAPYFPPD PQKF  VH+VFGASNV KL+NE+    R
Sbjct: 27  VCGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQR 86

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY---------- 110
           EDA+NSLAYEA+ R+RDPVYGCVG+ISILQH L+Q+Q DL  AK EL+ Y          
Sbjct: 87  EDAMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASAST 146

Query: 111 --IGPQAM-------MPMLQAQAFMPQQH---LGNPSSSTVI 140
              GPQAM       MP   A  F+   H   LG+   ST +
Sbjct: 147 APTGPQAMAEFIGSAMPNGAAHNFINLGHSAALGSLGGSTAM 188

Zea mays (taxid: 4577)

>sp|Q8LQH4|LBD6_ORYSJ LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/108 (73%), Positives = 88/108 (81%)

Query: 3   SSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLRED 62
            + SPCAACKFLRRKC  +CVFAPYFPPD PQKF +VH+VFGASNV KLLNEL    RED
Sbjct: 34  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQRED 93

Query: 63  AVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY 110
           AVNSLAYEA+ RLRDPVYGCV +ISILQ  L+Q+Q DL  AK EL+ Y
Sbjct: 94  AVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WXT0|LBD6_ORYSI LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/108 (73%), Positives = 88/108 (81%)

Query: 3   SSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLRED 62
            + SPCAACKFLRRKC  +CVFAPYFPPD PQKF +VH+VFGASNV KLLNEL    RED
Sbjct: 34  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQRED 93

Query: 63  AVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY 110
           AVNSLAYEA+ RLRDPVYGCV +ISILQ  L+Q+Q DL  AK EL+ Y
Sbjct: 94  AVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|O04479|LBD6_ARATH LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1

 Score =  171 bits (432), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 97/109 (88%)

Query: 2   SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLRE 61
           SS+NSPCAACKFLRRKC  ECVFAPYFPPDQPQKFANVHKVFGASNV KLLNEL  + RE
Sbjct: 4   SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRE 63

Query: 62  DAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY 110
           DAVNSLAYEA+ RLRDPVYGCVG+IS+LQH+L+Q+Q DL  AK EL+ Y
Sbjct: 64  DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Positively regulates LATERAL ORGAN BOUNDARIES (LOB) within the shoot apex, and the class III HD-ZIP genes REV, PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 1 (AS1) to repress the knox homeobox genes BP/KNAT1, KNAT2, and KNAT6 and the abaxial determinants ARF3/ETT, KAN2 and YAB5. May act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA silencing pathway, to regulate the leaf morphogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  168 bits (425), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 93/109 (85%)

Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDA 63
           +NSPCAACKFLRRKCT +CVFAPYFPP++P KFANVH++FGASNV+K+L+E+A + REDA
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 64  VNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIG 112
           VNSLAYEAEARL+DPVYGCVG IS+LQ ++ ++Q +L     +L  Y G
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYAG 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  168 bits (425), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 91/109 (83%)

Query: 2   SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLRE 61
           +S NSPCAACKFLRRKC   C+FAPYFPP++P KFANVHK+FGASNV KLLNEL  + RE
Sbjct: 6   NSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQRE 65

Query: 62  DAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY 110
           DAVNSLAYEAEAR+RDPVYGCVG IS LQ ++ ++Q +L +A  +LA Y
Sbjct: 66  DAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 83/103 (80%)

Query: 5   NSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAV 64
           +SPCA+CK LRR+C ++C+FAPYFPPD P KFA VHKVFGASNV+K+L EL  + R DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 65  NSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKEL 107
           NSL +EA AR+RDPVYGCVG IS LQ+++ Q+Q  L  A+ E+
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
359497481	252	PREDICTED: LOB domain-containing protein	0.817	0.960	0.711	4e-90
359480447	292	PREDICTED: LOB domain-containing protein	0.831	0.842	0.703	1e-89
302144152	308	unnamed protein product [Vitis vinifera]	0.831	0.798	0.703	1e-89
224094430	287	predicted protein [Populus trichocarpa]	0.918	0.947	0.649	3e-89
359480449	283	PREDICTED: LOW QUALITY PROTEIN: LOB doma	0.820	0.858	0.653	1e-84
225470475	299	PREDICTED: LOB domain-containing protein	0.814	0.806	0.66	7e-84
255562639	310	Protein ASYMMETRIC LEAVES2, putative [Ri	0.810	0.774	0.711	1e-82
224084287	270	predicted protein [Populus trichocarpa]	0.793	0.870	0.666	2e-78
296085754	223	unnamed protein product [Vitis vinifera]	0.706	0.937	0.619	8e-77
356540697	308	PREDICTED: LOB domain-containing protein	0.949	0.912	0.609	2e-72

>gi|359497481|ref|XP_003635533.1| PREDICTED: LOB domain-containing protein 36-like, partial [Vitis vinifera]

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 180/253 (71%), Positives = 205/253 (81%), Gaps = 11/253 (4%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MSSSNSPCAACK LRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNV+KLLNEL    R
Sbjct: 1   MSSSNSPCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAEARLRDPVYGCVGLISILQ RLKQVQ+DL++AKKEL+ YIGP AM+P+ 
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQNDLFTAKKELSAYIGPSAMLPIP 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFE 180
           Q    +PQQH+ NP SS+ I +   PM+G+PTG +H  QLVIR+P HQ Q  Q +QQ+ E
Sbjct: 121 QPAGCLPQQHMSNPCSSSQIPYNTPPMLGLPTGPTHGRQLVIREP-HQTQQYQHRQQILE 179

Query: 181 AQQLAAAVAAKEQQEMLRSYEQQQE-----LVRFNSGFDAPTGFN----NQMSGGTMSPS 231
           AQQ+A AVAA+EQQEMLR+YEQQQ+     LVRFNSGFDA         NQM+   +SPS
Sbjct: 180 AQQIAEAVAAREQQEMLRTYEQQQQQQQQLLVRFNSGFDAGGTVGASSFNQMTAA-ISPS 238

Query: 232 LALGGFDNSYQIQ 244
           LALG FDNSYQ++
Sbjct: 239 LALGPFDNSYQLE 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480447|ref|XP_002263109.2| PREDICTED: LOB domain-containing protein 36-like [Vitis vinifera]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 206/256 (80%), Gaps = 10/256 (3%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MSSSNSPCAACK LRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNV+KLLNEL    R
Sbjct: 1   MSSSNSPCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAEARLRDPVYGCVGLISILQ RLKQVQ+DL++AKKEL+ YIGP AM+P+ 
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQNDLFTAKKELSAYIGPSAMLPIP 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFE 180
           Q    +PQQH+ NP SS+ I +   PM+G+ TG +H  QLVIR+P    Q+ Q QQQ+ E
Sbjct: 121 QPAGCLPQQHMSNPCSSSQIPYNTPPMLGLATGPTHGRQLVIREPHQTQQY-QHQQQILE 179

Query: 181 AQQLAAAVAAKEQQEMLRSYEQQQE----LVRFNSGFDAPTGFN----NQMSGGTMSPSL 232
           AQQ+A AVAA+EQQEMLR+YEQQ++    LVRFNSGFDA         NQM+   +SPSL
Sbjct: 180 AQQIAEAVAAREQQEMLRTYEQQRQQQQLLVRFNSGFDAGGTVGASSFNQMTAA-ISPSL 238

Query: 233 ALGGFDNSYQIQAQQQ 248
           ALG FDNSYQ++ QQQ
Sbjct: 239 ALGPFDNSYQLEEQQQ 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144152|emb|CBI23279.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 206/256 (80%), Gaps = 10/256 (3%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MSSSNSPCAACK LRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNV+KLLNEL    R
Sbjct: 1   MSSSNSPCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAEARLRDPVYGCVGLISILQ RLKQVQ+DL++AKKEL+ YIGP AM+P+ 
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQNDLFTAKKELSAYIGPSAMLPIP 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFE 180
           Q    +PQQH+ NP SS+ I +   PM+G+ TG +H  QLVIR+P    Q+ Q QQQ+ E
Sbjct: 121 QPAGCLPQQHMSNPCSSSQIPYNTPPMLGLATGPTHGRQLVIREPHQTQQY-QHQQQILE 179

Query: 181 AQQLAAAVAAKEQQEMLRSYEQQQE----LVRFNSGFDAPTGFN----NQMSGGTMSPSL 232
           AQQ+A AVAA+EQQEMLR+YEQQ++    LVRFNSGFDA         NQM+   +SPSL
Sbjct: 180 AQQIAEAVAAREQQEMLRTYEQQRQQQQLLVRFNSGFDAGGTVGASSFNQMTAA-ISPSL 238

Query: 233 ALGGFDNSYQIQAQQQ 248
           ALG FDNSYQ++ QQQ
Sbjct: 239 ALGPFDNSYQLEEQQQ 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094430|ref|XP_002310159.1| predicted protein [Populus trichocarpa] gi|222853062|gb|EEE90609.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/311 (64%), Positives = 228/311 (73%), Gaps = 39/311 (12%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFA+VHKVFGASNVAKLLNEL    R
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELNAAQR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAE RLRDPVYGCVGLISILQHRLKQ+Q+DLY AKKELA YIGPQAM+PM+
Sbjct: 61  EDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQLQNDLYCAKKELANYIGPQAMLPMV 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQ-HNQQQQQMF 179
                M  QH+GN SSSTV+QH ++PMMGIP+     GQ+ +R   HQHQ H+   QQ++
Sbjct: 121 -----MQPQHMGNTSSSTVMQHSVMPMMGIPS----VGQMGMRAEAHQHQNHHVHPQQLY 171

Query: 180 EAQQLAAAVAAKEQQEMLRSYE------QQQELVRFNSGFD-----APTGFNNQMSGGTM 228
           EAQQLAA VAA+E QE+LR+YE       QQE+VRFN G +     + TG+N       M
Sbjct: 172 EAQQLAAVVAARE-QEILRAYEQQQQQHHQQEIVRFNGGLEPANSVSDTGYNQINPSAAM 230

Query: 229 SPSLALGGFDNSYQIQAQQQPAEHHHHHATAHP--LQAQLLQQQPPPPPQTQQQQKSPSE 286
             SLALG FDN++QIQ Q +P          HP  LQAQ+L Q    P Q QQ  KS SE
Sbjct: 231 PSSLALGTFDNTFQIQPQGEP----------HPNQLQAQVLLQ----PQQIQQHPKSESE 276

Query: 287 EG-RSIGGPSC 296
           EG RS  GPSC
Sbjct: 277 EGRRSTVGPSC 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480449|ref|XP_002263136.2| PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 36 [Vitis vinifera]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 172/263 (65%), Positives = 200/263 (76%), Gaps = 20/263 (7%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MSSSNSPCAACK  RRKCTQEC++APYFPPDQP KFANVHKVFGASNVAKLLNE+    R
Sbjct: 1   MSSSNSPCAACKLQRRKCTQECIYAPYFPPDQPHKFANVHKVFGASNVAKLLNEINVAHR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAEARL DPVYGCVGLISILQ  LKQVQSDL +AKKEL+ YIGP AM P  
Sbjct: 61  EDAVNSLAYEAEARLHDPVYGCVGLISILQQTLKQVQSDLLAAKKELSAYIGPIAMQPNF 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDP--QHQHQHNQQQQQM 178
           Q   +MPQQH+ +PSSS++I + M P +G+PTG+SH GQLVIR+P  Q   Q+  Q+Q +
Sbjct: 121 QHPGYMPQQHMTSPSSSSLIPYNMSP-LGLPTGASHGGQLVIREPQPQQSQQYQHQRQNI 179

Query: 179 FEAQQLAAAVAAKEQQEMLRSYEQ---QQELVRFNSGFD----APTGFNNQMSGGTMSPS 231
            EAQQ+    AA+EQQEMLR++EQ   QQEL+RFNSGF+       G  NQ +  TM PS
Sbjct: 180 LEAQQM----AAREQQEMLRTFEQQQRQQELMRFNSGFEEAGTVGAGGFNQTTAATMVPS 235

Query: 232 LALGGFDNSYQIQAQQQPAEHHH 254
           LALG FDN Y ++      EHH+
Sbjct: 236 LALGKFDNPYXLE------EHHY 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470475|ref|XP_002263845.1| PREDICTED: LOB domain-containing protein 36-like [Vitis vinifera]

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 165/250 (66%), Positives = 190/250 (76%), Gaps = 9/250 (3%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MSSSNSPCAACK  R+KCTQECV APYFPPDQPQKF NVHKVFGASNV KLLNEL    R
Sbjct: 1   MSSSNSPCAACKIRRQKCTQECVLAPYFPPDQPQKFVNVHKVFGASNVTKLLNELNAANR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAEARLRDPVYGCVGLIS+LQ RLKQVQSDL +AKKELA YIGP AM+P +
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISVLQQRLKQVQSDLLAAKKELAAYIGPSAMLPFI 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFE 180
           Q   +MPQQ++ +PSSS+VI + M P++G+P G+SHSGQLVIR+PQ Q     Q QQ   
Sbjct: 121 QHVEYMPQQYMSDPSSSSVIPYNMSPILGLPPGASHSGQLVIREPQPQQTQQYQHQQQQI 180

Query: 181 AQQLAAAVA-AKEQQEMLRSYEQQ---QELVRFNSGFDAPTGFN-----NQMSGGTMSPS 231
            +    A A A   QE+LR++EQQ   Q L+RF+SGFDA          NQM+   MSPS
Sbjct: 181 LEAQQLATAMAVRGQEILRTHEQQLQEQNLIRFDSGFDADAMVGAASSFNQMTEAVMSPS 240

Query: 232 LALGGFDNSY 241
           LALG FD++Y
Sbjct: 241 LALGTFDDAY 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562639|ref|XP_002522325.1| Protein ASYMMETRIC LEAVES2, putative [Ricinus communis] gi|223538403|gb|EEF40009.1| Protein ASYMMETRIC LEAVES2, putative [Ricinus communis]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 185/260 (71%), Positives = 207/260 (79%), Gaps = 20/260 (7%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MS+  SPCAACK  RRKCTQ+CVFAPYFPPDQPQKFAN+HKVFGASNVAKLLNEL T  R
Sbjct: 1   MSTPISPCAACKLQRRKCTQDCVFAPYFPPDQPQKFANLHKVFGASNVAKLLNELNTAQR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLK++QSDLY+AKKELA YIGPQAM+  L
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKELQSDLYNAKKELAQYIGPQAMLTTL 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMM-GIPTGS--SHSGQLVIRDPQHQHQHNQQQQQ 177
            A  FM Q HLGNPSSS +IQH  +P+M GIP G+   H G L+IR+PQ Q    QQQ Q
Sbjct: 121 PAPTFMGQPHLGNPSSS-LIQHNALPIMGGIPAGTVHGHGGPLMIREPQQQ----QQQHQ 175

Query: 178 MFEAQQLAAAVAAKEQQEMLRSYE----QQQELVRFNSGFDA-------PTGFNNQMSGG 226
           +FEAQQLAAA+AA+EQQEMLR+YE    QQQE+VRFN G+D          GF NQ++  
Sbjct: 176 IFEAQQLAAALAAREQQEMLRAYEQQQQQQQEIVRFNRGYDVQDPVHNNTAGF-NQITVA 234

Query: 227 TMSPSLALGGFDNSYQIQAQ 246
            MSPSLALG FD  YQIQ+Q
Sbjct: 235 AMSPSLALGSFDTPYQIQSQ 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084287|ref|XP_002307250.1| predicted protein [Populus trichocarpa] gi|222856699|gb|EEE94246.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/261 (66%), Positives = 197/261 (75%), Gaps = 26/261 (9%)

Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDA 63
           SNSPCAACKFLRRKCTQECVFAPYFPPDQP+KFA+VHKVFGASNVAKLLNEL    REDA
Sbjct: 1   SNSPCAACKFLRRKCTQECVFAPYFPPDQPKKFASVHKVFGASNVAKLLNELNAAQREDA 60

Query: 64  VNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQ 123
           VNSLAYEAE RLRDPVYGCVGLISILQ RLKQ+Q+DLYSAKKEL  Y+  QAM+PML   
Sbjct: 61  VNSLAYEAEERLRDPVYGCVGLISILQQRLKQLQNDLYSAKKELVNYVEGQAMLPML--- 117

Query: 124 AFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFEAQQ 183
             M  QHLGNPSSSTV+QH  +PMMGIP+     GQ+ +R       H+   QQ++EAQQ
Sbjct: 118 --MQPQHLGNPSSSTVMQHNGMPMMGIPS----VGQMGMR-ADTHQHHHAHPQQIYEAQQ 170

Query: 184 LAAAVAAKEQQEMLRSYE----------QQQELVRFNSGFD-----APTGFNNQMSGGTM 228
           LAA VAA+E QEMLR+YE          +Q E+VRFN GFD     A TGFN+      M
Sbjct: 171 LAAVVAARE-QEMLRAYEQQHQHHTQAQRQHEIVRFNGGFDPANSVAATGFNHVNPAAAM 229

Query: 229 SPSLALGGFDNSYQIQAQQQP 249
           SPSLALG F+N++QIQ Q +P
Sbjct: 230 SPSLALGTFENTFQIQPQGEP 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085754|emb|CBI29565.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 156/252 (61%), Positives = 176/252 (69%), Gaps = 43/252 (17%)

Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
           MSSSNSPCAACK LRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNV+KLLNEL    R
Sbjct: 1   MSSSNSPCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHR 60

Query: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
           EDAVNSLAYEAEARLRDPVYGCVGLISILQ RLKQVQ+DL++AKKEL+ YIGP AM+P+ 
Sbjct: 61  EDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQNDLFTAKKELSAYIGPSAMLPIP 120

Query: 121 QAQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQHQHNQQQQQMFE 180
           Q    +PQQH+ NP SS+ I +   PM+G+PTG +H  QLVIR+P HQ Q          
Sbjct: 121 QPAGCLPQQHMSNPCSSSQIPYNTPPMLGLPTGPTHGRQLVIREP-HQTQ---------- 169

Query: 181 AQQLAAAVAAKEQQEMLRSYEQQQELVRFNSGFDAPTGFN----NQMSGGTMSPSLALGG 236
                                      +FNSGFDA         NQM+   +SPSLALG 
Sbjct: 170 ---------------------------QFNSGFDAGGTVGASSFNQMTAA-ISPSLALGP 201

Query: 237 FDNSYQIQAQQQ 248
           FDNSYQ++ QQQ
Sbjct: 202 FDNSYQLEEQQQ 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540697|ref|XP_003538822.1| PREDICTED: LOB domain-containing protein 36-like [Glycine max]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 221/320 (69%), Gaps = 39/320 (12%)

Query: 2   SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLRE 61
           SSSNSPCAACKFLRRKCTQECVFAPYFPPD PQ+FA VHKVFGASNVAKLLNEL+   R+
Sbjct: 3   SSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRD 62

Query: 62  DAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQ 121
           DAV SLAYEAEARLRDPVYGCVGLIS+LQH+L+Q+Q +L +AKKELA YIGPQA+  +  
Sbjct: 63  DAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELSNAKKELANYIGPQALQGI-- 120

Query: 122 AQAFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQ-HQHNQQQQQMFE 180
             A M QQH  NP    +  +G +P     T S H GQLVIRD Q   H H+  QQQ+ E
Sbjct: 121 -PAPMLQQHPNNPFPGAM--YGNMPTA---TASVHGGQLVIRDAQPVPHHHHHHQQQILE 174

Query: 181 AQQLAAAVAAKEQQEMLRSYE--QQQELVRFN-SGFD-----APTGFNN----QMSGGTM 228
           AQQLAAAVAA+EQQEM RSYE  QQQE +RF+  GFD     +  GF+       S   +
Sbjct: 175 AQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGGFDMGSASSAGGFSQVSPAAGSADQL 234

Query: 229 SPSLALGGFDNSYQIQAQQQPAEHHHHHATAH-PLQAQLLQQQPPPPPQTQQQ------- 280
           SPSLALG FDN+Y +Q Q Q  E HHHH   H PL AQLL      PPQ +QQ       
Sbjct: 235 SPSLALGSFDNAYHMQQQPQQGEPHHHHHPHHIPLAAQLLL-----PPQQKQQTHHESQL 289

Query: 281 ----QKSPSEEGRSIGGPSC 296
               Q S SEE RS+ GPSC
Sbjct: 290 PLHRQHSESEECRSV-GPSC 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.533	0.504	0.751	3.3e-67
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.773	0.736	0.464	3.7e-48
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.368	0.547	0.807	1.9e-44
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.361	0.411	0.757	1.6e-40
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.378	0.704	0.672	3.7e-39
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.523	0.833	0.542	3.7e-39
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.347	0.533	0.640	1.2e-33
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.344	0.593	0.647	6.7e-33
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.388	0.513	0.547	4.7e-32
TAIR|locus:2065769	268	LBD13 "AT2G30340" [Arabidopsis	0.344	0.380	0.598	1.6e-31

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
 Identities = 124/165 (75%), Positives = 138/165 (83%)

Query:     1 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLR 60
             M+SS+SPCAACKFLRRKCTQECVFAPYFPPDQPQKFA VHKVFGASNVAKLLNELA+N R
Sbjct:     1 MASSSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQR 60

Query:    61 EDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
             EDAVNSL YEAEARLRDPVYGCVGLISILQHRLKQV  DL +AKKELATY+GPQAM+P+L
Sbjct:    61 EDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQAMLPIL 120

Query:   121 QAQAFM---PQQHLGNPSSSTVI---QHGMVPMMGIPTGSSHSGQ 159
             Q   FM   PQ    + SS++V+    H ++PMM IPTG  +  Q
Sbjct:   121 QPH-FMSLPPQPQRPSSSSASVLTQHHHNLLPMMAIPTGQLYHQQ 164

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 116/250 (46%), Positives = 150/250 (60%)

Query:     4 SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDA 63
             +++PCAACK LRRKCTQECVFAPYFPP  PQKF  VH+VFGASNV K+LN+L  + RED 
Sbjct:     2 ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query:    64 VNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPMLQAQ 123
             VNSL YEAEAR+RDP+YGCVGLIS LQ  LK++Q DL +AK+EL  Y+GP A++P     
Sbjct:    62 VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAVIP----P 117

Query:   124 AFMPQQHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQ-LVIRDPXXXXXXXXXXXXXXXXX 182
              ++P   +GN          M+ M G+P G    G+ L+IR+P                 
Sbjct:   118 PYLPP--IGNNPPPNF----MMSMEGMPPGVIPQGEPLMIREPNMSQQHHHQQPQDEQLQ 171

Query:   183 XXXXXXXXXXXXXMLRSYEQQQELVRF---NSGFDAPTGFN-----NQMSGGTMS-PSLA 233
                          ML   +QQ     +   N+G    TGFN     +Q +GG++S PSLA
Sbjct:   172 FIASDAQRMAAM-MLERGDQQGMFNGYGIDNNGSVTATGFNQMDVNDQGAGGSLSGPSLA 230

Query:   234 LGGFDNSYQI 243
             LG F ++YQ+
Sbjct:   231 LGSFGDAYQM 240

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 88/109 (80%), Positives = 97/109 (88%)

Query:     2 SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLRE 61
             SS+NSPCAACKFLRRKC  ECVFAPYFPPDQPQKFANVHKVFGASNV KLLNEL  + RE
Sbjct:     4 SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRE 63

Query:    62 DAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY 110
             DAVNSLAYEA+ RLRDPVYGCVG+IS+LQH+L+Q+Q DL  AK EL+ Y
Sbjct:    64 DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 81/107 (75%), Positives = 90/107 (84%)

Query:     4 SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDA 63
             + SPCAACKFLRRKC  +CVFAPYFPPD PQKF +VH+VFGASNV KLLNEL    REDA
Sbjct:    30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query:    64 VNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY 110
             VNSLAYEA+ RLRDPVYGCVG+ISILQH L+Q+Q DL  AK EL+ Y
Sbjct:    90 VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKY 136

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/113 (67%), Positives = 96/113 (84%)

Query:     1 MSS-SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNL 59
             MS+ +NSPCAACKFLRRKCT +CVFAPYFPP++P KFANVH++FGASNV+K+L+E+A + 
Sbjct:    32 MSNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQ 91

Query:    60 REDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIG 112
             REDAVNSLAYEAEARL+DPVYGCVG IS+LQ ++ ++Q +L     +L  Y G
Sbjct:    92 REDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYAG 144

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 89/164 (54%), Positives = 112/164 (68%)

Query:     2 SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLRE 61
             +S NSPCAACKFLRRKC   C+FAPYFPP++P KFANVHK+FGASNV KLLNEL  + RE
Sbjct:     6 NSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQRE 65

Query:    62 DAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATY------IG-PQ 114
             DAVNSLAYEAEAR+RDPVYGCVG IS LQ ++ ++Q +L +A  +LA Y       G P 
Sbjct:    66 DAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPG 125

Query:   115 AMMPMLQAQAFMPQQHLGNPSSSTVIQHGMVPMMG-IPTGSSHS 157
              ++ ++     +P Q L  P +      G  P+M  +P G+  S
Sbjct:   126 NVVDLVFQPQPLPSQQLP-PLNPVYRLSGASPVMNQMPRGTGGS 168

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 66/103 (64%), Positives = 83/103 (80%)

Query:     5 NSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAV 64
             +SPCA+CK LRR+C ++C+FAPYFPPD P KFA VHKVFGASNV+K+L EL  + R DAV
Sbjct:     6 SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query:    65 NSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKEL 107
             NSL +EA AR+RDPVYGCVG IS LQ+++ Q+Q  L  A+ E+
Sbjct:    66 NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 66/102 (64%), Positives = 82/102 (80%)

Query:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVN 65
             SPCAACK LRR+C Q+CVF+PYFP D+PQKFANVH+VFGASNV K+L EL  + R DAV+
Sbjct:    12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query:    66 SLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKEL 107
             S+ YEA AR+RDPVYGCVG IS LQ ++  +Q+ L  A+ E+
Sbjct:    72 SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 63/115 (54%), Positives = 86/115 (74%)

Query:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVN 65
             +PCAACK LRR+C QEC F+PYF P +P KFA+VHKVFGASNV+K+L E+  + R DA N
Sbjct:    44 TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query:    66 SLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKELATYIGPQAMMPML 120
             SL YEA  RLRDPVYGC+G IS LQ +++ +Q++L + + E+  Y   +A+  ++
Sbjct:   104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLI 158

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2065769 LBD13 "AT2G30340" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 61/102 (59%), Positives = 79/102 (77%)

Query:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVN 65
             +PCAACK LRR+C +EC F+PYF P +P KFA VHKVFGASNV+K+L E+  + R DA N
Sbjct:    51 TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query:    66 SLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKEL 107
             SL YEA  RLRDP+YGC+G IS LQH ++ +QS+L + + E+
Sbjct:   111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEI 152

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKZ3	LBD36_ARATH	No assigned EC number	0.5992	0.7398	0.6996	yes	no
Q8LQH4	LBD6_ORYSJ	No assigned EC number	0.7314	0.3648	0.4014	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009703001 SubName- Full=Chromosome undetermined scaffold_245, whole genome shotgun sequence; (245 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	3e-52
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  166 bits (422), Expect = 3e-52
 Identities = 64/101 (63%), Positives = 78/101 (77%)

Query: 7   PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNS 66
           PCAACK LRRKC  +CV APYFP +QP +FANVHK+FGASNV KLL  L    R+DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 67  LAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLYSAKKEL 107
           L YEA+AR RDPVYGCVG+I  LQ +L+Q+Q++L   K +L
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 31/175 (17%), Positives = 44/175 (25%), Gaps = 16/175 (9%)

Query: 112 GPQAMMPMLQAQAFMPQ--QHLGNPSSSTVIQHGMVPMMGIPTGSSHSGQLVIRDPQHQH 169
                +  ++AQ    Q    L  P         ++P    P  ++   Q     P+   
Sbjct: 151 QKMLSLEEVEAQLQQRQQAPQLPQP------PQQVLPQGMPPRQAAFPQQGP---PEQPP 201

Query: 170 QHNQQQQQMFEAQQLAAAVAAKEQQEMLRSYEQQQELVRFNSGFDAPTGFNNQMSGGTMS 229
            + Q  Q   E  Q    + A  Q         Q              G + QM      
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQ 261

Query: 230 PSLALGGFDNSYQIQAQQQPAEHHHHHATAHPLQAQLLQQQPPPPPQTQQQQKSP 284
           P             Q Q QP   +         Q Q     PP  PQ     + P
Sbjct: 262 PPQ-----QQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=4.2e-48  Score=313.27  Aligned_cols=101  Identities=64%  Similarity=1.162  Sum_probs=99.6

Q ss_pred             CChhhhHhhhCCCCCCccCCCCCCCChhhHhHHHhhhccchHHHHHHhhChhhHHHHHHHHHHHHhhhccCCCccchHHH
Q 039589            7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELATNLREDAVNSLAYEAEARLRDPVYGCVGLI   86 (296)
Q Consensus         7 ~CAACK~lRRkC~~dCifAPYFPadq~~~F~~VHKVFG~SNV~KmL~~Lpp~qR~dAv~SLvYEA~aR~RDPVyGCvGiI   86 (296)
                      +|||||+|||||+++|+||||||++++++|++||||||+|||+|||+++++++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 039589           87 SILQHRLKQVQSDLYSAKKEL  107 (296)
Q Consensus        87 s~LQqQL~~lq~EL~~ak~eL  107 (296)
                      +.|+|+|+++++||+.++++|
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00