Citrus Sinensis ID: 039601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQYNQQPLICSF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
MITPKKLMKLAKKWQKLAASKRLrislprptagaadaescstsstaekghfvvhtTDQIRFVIPLKYLENNIIRELFRiaedefgmpgsgpitlpcDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIghclpssylhqeqynqqplicsf
Flexible Loop (DISEMBL)
mitpkklmKLAKKWQKLAASKRLRISLPRPTAGAADAEScstsstaekghfvvhttdqirfviplKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSylhqeqynqqplicsf
Low Complexity Region (SEG)
MITPkklmklakkwqklaaskRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQYNQQPLICSF
Disordered region (IsUnstruct)
************************************************GHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQY*********
Disordered Region (DISOPRED)
***PKKLMKLA************************************KGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLI************LLSLSV*****************QPLICSF
Disordered Region (DISEMBL)
MITPKKLMKLAKKWQKLAASKRLRISLP*****************AEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQYNQQPLICSF
Disordered Region (DISPRO)
*ITPKKLMKLAKKWQKLAASKRLRISLPRP***************AEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSY*****YNQQPLICSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQYNQQPLICSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.473	0.788	0.333	3e-05
P33080	92	Auxin-induced protein X10	no	no	0.486	0.793	0.368	0.0002
P33081	82	Auxin-induced protein 15A	no	no	0.46	0.841	0.338	0.0003
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.5	0.815	0.311	0.0004

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 38  ESCSTSSTAEKGHFVVHTTDQIR-FVIPLKYLENNIIRELFRIAEDEFGM--PGSGPITL 94
           ++ S +   EKG+  V+  +++R FVIP+ YL     ++L   AE+EFG   P  G +T+
Sbjct: 17  QASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGG-LTI 75

Query: 95  PCDAIVMKYVVSLIQ 109
           PC   V +++ S + 
Sbjct: 76  PCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 23 LRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR-FVIPLKYLENNIIRELFRIAE 81
           R+   R T+ AA+ ++ S S    KG+ VV+  D++R F+IP+ YL     ++L   AE
Sbjct: 3  FRLPGIRKTSIAAN-QASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAE 61

Query: 82 DEFGMPGS-GPITLPC 96
          +EFG     G +T+PC
Sbjct: 62 EEFGYDHPMGGLTIPC 77

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 41  STSSTAEKGHFVVHTTDQI-RFVIPLKYLENNIIRELFRIAEDEFGMPGS-GPITLPCDA 98
           S ++ A KG+  V+  +++ RFVIP+ YL     ++L   AE+EFG     G +T+PC  
Sbjct: 12  SKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSE 71

Query: 99  IVMKYVVSLIQ 109
            V + + S + 
Sbjct: 72  DVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 34  AADAESCSTSSTAEKGHFVVHTTDQI-RFVIPLKYLENNIIRELFRIAEDEFGMPGS-GP 91
           +A  E+ S    A KG+  V+  + + RFVIP+ +L   + ++L   AE+EFG     G 
Sbjct: 13  SARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGG 72

Query: 92  ITLPCDAIVMKYVVSLI 108
           +T+PC   + +++ S +
Sbjct: 73  LTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
225428223	148	PREDICTED: indole-3-acetic acid-induced	0.973	0.986	0.608	5e-49
224103101	148	SAUR family protein [Populus trichocarpa	0.986	1.0	0.586	1e-46
225428235	144	PREDICTED: uncharacterized protein LOC10	0.96	1.0	0.6	4e-46
225428233	147	PREDICTED: uncharacterized protein LOC10	0.98	1.0	0.58	9e-46
255566718	148	conserved hypothetical protein [Ricinus	0.986	1.0	0.586	4e-45
224103099	148	SAUR family protein [Populus trichocarpa	0.986	1.0	0.566	1e-43
297744507	254	unnamed protein product [Vitis vinifera]	0.893	0.527	0.598	2e-43
225428213	148	PREDICTED: uncharacterized protein LOC10	0.98	0.993	0.550	3e-43
225428225	148	PREDICTED: uncharacterized protein LOC10	0.986	1.0	0.533	1e-42
224080736	148	SAUR family protein [Populus trichocarpa	0.986	1.0	0.56	2e-42

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 124/148 (83%), Gaps = 2/148 (1%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL+K+A+KWQK+AA +R RISLPR T+   DAESCSTSSTAEKGHFVV++ D+ R
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPR-TSREVDAESCSTSSTAEKGHFVVYSADESR 59

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL YL +NI RELF+++E+EFG+P +GPITLPCDA+ ++Y++SL+Q+ +AKD+EKA+
Sbjct: 60  FVVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKAL 119

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLIC 148
           L +++  G CL +S + QEQ NQQ L+C
Sbjct: 120 LTAIAT-GRCLSTSNICQEQGNQQLLVC 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103101|ref|XP_002312926.1| SAUR family protein [Populus trichocarpa] gi|222849334|gb|EEE86881.1| SAUR family protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 116/150 (77%), Gaps = 2/150 (1%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL+KLA+KWQKLAA +R RI  P   +G  D+E CSTSSTAEKGHFVV+TTD  R
Sbjct: 1   MISAKKLIKLARKWQKLAAIRRKRIEFPGTVSGK-DSEDCSTSSTAEKGHFVVYTTDNKR 59

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL YL N I+RELF +AE+E+G+ G+ P+TL CDA++M+Y ++LIQ++VAKDVEKA+
Sbjct: 60  FVLPLDYLNNEIVRELFNLAEEEYGLTGNAPLTLACDAVIMEYTITLIQQNVAKDVEKAL 119

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICSF 150
           L++++    C  S YL  E  NQQ  +CSF
Sbjct: 120 LMTIAS-SQCSSSLYLRHEVRNQQLSVCSF 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428235|ref|XP_002279356.1| PREDICTED: uncharacterized protein LOC100252141 [Vitis vinifera]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 117/150 (78%), Gaps = 6/150 (4%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL ++A+KWQKLA  +  RISL     G  +A SC+TS  A+KGHFVV+T+D+IR
Sbjct: 1   MISTKKLSRVARKWQKLAPLRHRRISL-----GGTNAWSCNTSPVADKGHFVVYTSDRIR 55

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL YL+N I RELF++AE+EFG+PG+GPI LPCDA+ M+Y VSLIQ+HVAKD+EKA+
Sbjct: 56  FVVPLVYLDNVIFRELFQMAEEEFGLPGNGPIILPCDAVFMEYAVSLIQRHVAKDLEKAL 115

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICSF 150
           L+S++    C  SSY HQ+Q N Q LIC F
Sbjct: 116 LMSIAA-DRCSSSSYFHQDQSNPQLLICGF 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428233|ref|XP_002279337.1| PREDICTED: uncharacterized protein LOC100257266 [Vitis vinifera]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 123/150 (82%), Gaps = 3/150 (2%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL+K+A+ WQK+AA +R RI LPR T+G  DA+ CSTS TAEKGHFVV+++D+ R
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPR-TSGEVDADGCSTS-TAEKGHFVVYSSDESR 58

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL YL +NI RELF+++E+EFG+P +GPITLPCDA+ ++Y++SL+Q+ +AKD+EKA+
Sbjct: 59  FVVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKAL 118

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICSF 150
           L +++  G CL +S L QEQ +QQ LIC +
Sbjct: 119 LTAIAT-GCCLSTSNLCQEQGSQQLLICGY 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566718|ref|XP_002524343.1| conserved hypothetical protein [Ricinus communis] gi|223536434|gb|EEF38083.1| conserved hypothetical protein [Ricinus communis]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 118/150 (78%), Gaps = 2/150 (1%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL+ LA+KWQKLA  KR RIS+PR   G+ DAE CSTS+T EKGHFVV+T DQ R
Sbjct: 1   MISAKKLLILARKWQKLAVLKRKRISIPR-IVGSPDAECCSTSNTVEKGHFVVYTNDQKR 59

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL+YL+N I+RELF++AE+EFG+  + P+TLPCDA++++Y++ LIQ+HV K+VEKA+
Sbjct: 60  FVLPLEYLKNEIVRELFKLAEEEFGLVSNTPLTLPCDAVLLQYIIGLIQRHVTKEVEKAL 119

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICSF 150
           L+ ++   HC  S Y  Q   +QQ LICSF
Sbjct: 120 LMFIAS-SHCSSSLYPLQADASQQILICSF 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103099|ref|XP_002312925.1| SAUR family protein [Populus trichocarpa] gi|222849333|gb|EEE86880.1| SAUR family protein [Populus trichocarpa]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 117/150 (78%), Gaps = 2/150 (1%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL+KLA++WQKLAA  R R++ P+ T  + D++ CSTSSTAEKGHFVV+TTD+ R
Sbjct: 1   MISAKKLIKLAREWQKLAAISRKRLTFPQ-TISSLDSDDCSTSSTAEKGHFVVYTTDEKR 59

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL YL N I++ELF +AE+EFG+  +GP+T+P DA  M+Y +++I+K+VAKDVEKA+
Sbjct: 60  FVLPLDYLNNEIVKELFNLAEEEFGLTSNGPLTMPRDAAFMEYAITMIKKNVAKDVEKAL 119

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICSF 150
           L++L+    C  + Y HQE  NQQ  ICSF
Sbjct: 120 LITLAS-DRCSSTLYPHQEVRNQQLSICSF 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744507|emb|CBI37769.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 113/142 (79%), Gaps = 8/142 (5%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL+K+A+ WQK+AA +R RI LPR T+G  DA+       A+KGHFVV+T+D+IR
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPR-TSGEVDAD------VADKGHFVVYTSDRIR 53

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL YL+N I RELF++AE+EFG+PG+GPI LPCDA+ M+Y VSLIQ+HVAKD+EKA+
Sbjct: 54  FVVPLVYLDNVIFRELFQMAEEEFGLPGNGPIILPCDAVFMEYAVSLIQRHVAKDLEKAL 113

Query: 121 LLSLSVIGHCLPSSYLHQEQYN 142
           L+S++    C  SSY HQ+Q N
Sbjct: 114 LMSIAA-DRCSSSSYFHQDQSN 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428213|ref|XP_002279151.1| PREDICTED: uncharacterized protein LOC100253738 [Vitis vinifera]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 118/149 (79%), Gaps = 2/149 (1%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI PKKL+++A+KWQK+AA  R RISL R   G  D ESCSTSS A+KGHFVV+++D+ R
Sbjct: 1   MICPKKLIRMARKWQKMAALGRKRISLQRINEGV-DEESCSTSSVADKGHFVVYSSDRRR 59

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FVIPL YL++ I+RELF+++E+E+G+  +GPI LPCD++ + YV+S IQ+ VAK++E+A+
Sbjct: 60  FVIPLMYLDSEIMRELFQMSEEEYGIQSTGPIILPCDSVFLDYVISFIQRGVAKELERAL 119

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICS 149
           ++S++   +C  SSY HQEQ N+Q L C+
Sbjct: 120 IMSIAP-SNCSSSSYFHQEQTNEQLLFCA 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428225|ref|XP_002282054.1| PREDICTED: uncharacterized protein LOC100253806 [Vitis vinifera]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 118/150 (78%), Gaps = 2/150 (1%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+PKKL+++A+KWQK+AA  R RISL R   G  + + CSTSS A+KGHFVV+++D+ R
Sbjct: 1   MISPKKLIRMARKWQKMAALGRKRISLQRINKGV-NEDCCSTSSVADKGHFVVYSSDRRR 59

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FVIPL YL + I RELF+++E+EFG+  +GPI LPCD++ + YV+S IQ+ VAK++E+A+
Sbjct: 60  FVIPLAYLNSEIFRELFQMSEEEFGIQSAGPIILPCDSVFLDYVISFIQRGVAKELERAL 119

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICSF 150
           ++S++   +C  SSY HQEQ N+Q L+C++
Sbjct: 120 IMSIAP-SNCSSSSYFHQEQTNEQLLLCAY 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080736|ref|XP_002306218.1| SAUR family protein [Populus trichocarpa] gi|222849182|gb|EEE86729.1| SAUR family protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 116/150 (77%), Gaps = 2/150 (1%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR 60
           MI+ KKL++LA+KWQKLAA ++ R++LP+ T  + +++  STSSTAEKGHFVV+TTD+ R
Sbjct: 1   MISAKKLIRLARKWQKLAAIRQKRLTLPQ-TISSLESDDRSTSSTAEKGHFVVYTTDKKR 59

Query: 61  FVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120
           FV+PL YL N I+RELF +AE+EFG+   GPITLPCDA  M+Y + LIQ++VAKD+EKA+
Sbjct: 60  FVLPLNYLNNEIVRELFNLAEEEFGLTSDGPITLPCDATFMEYAIILIQQNVAKDIEKAL 119

Query: 121 LLSLSVIGHCLPSSYLHQEQYNQQPLICSF 150
           L++++    C  S YLH +  + Q  ICSF
Sbjct: 120 LVTIAS-NRCSSSLYLHHDVRHHQLSICSF 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.713	0.748	0.514	2.9e-25
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.746	0.794	0.457	2.9e-23
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.833	0.844	0.433	2.9e-23
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.82	0.872	0.424	1.3e-22
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.64	0.680	0.51	1.6e-22
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.66	0.697	0.480	1.1e-21
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.68	0.723	0.485	1.5e-21
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.753	0.837	0.428	3e-21
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.553	0.813	0.476	4.7e-16
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.62	0.756	0.381	2.7e-13

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 55/107 (51%), Positives = 78/107 (72%)

Query:    41 STSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIV 100
             S+SST EKG FVV+T D+IRF  P+ YL N+I++EL +I+E+EFG+P  GPITLP D++ 
Sbjct:    36 SSSSTVEKGCFVVYTADKIRFAFPISYLSNSIVQELLKISEEEFGLPTEGPITLPFDSVF 95

Query:   101 MKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQYNQQPLI 147
             ++Y++ LIQ+ +  D EKA+L+S+S     L  S L QEQ  QQ L+
Sbjct:    96 LEYLIKLIQRRMDGDTEKALLMSISSAKCSLQCSLLQQEQSTQQLLV 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/118 (45%), Positives = 82/118 (69%)

Query:    22 RLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAE 81
             R RIS  R T      ++ S+S+ AEKG FVV+T+D+IRF  P+ YL N++I+EL +I+E
Sbjct:    22 RKRISFHRST------DTTSSSTAAEKGCFVVYTSDRIRFAFPISYLSNSVIQELLKISE 75

Query:    82 DEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQE 139
             +EFG+P  GPITLP D++ ++Y++ L+Q+ +  D EKA++ S+S     LP S+  QE
Sbjct:    76 EEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGDTEKALITSISSTRCSLPCSFQLQE 133

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 55/127 (43%), Positives = 79/127 (62%)

Query:    22 RLRISLPRPTAGAADAESCSTSSTA-EKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIA 80
             R RIS  R T       + ++SSTA EKG FVV+T D+IRF  PL YL N++  EL +I+
Sbjct:    22 RKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKIRFAFPLSYLNNSVFEELLKIS 81

Query:    81 EDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQ 140
             E+EFG+   GPITLP D++ ++Y++  I++ +  D EKA+L+S+S    C       Q  
Sbjct:    82 EEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGDTEKALLMSISS-ARCSMQPQEQQSG 140

Query:   141 YNQQPLI 147
             Y QQ L+
Sbjct:   141 YTQQLLV 147

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 53/125 (42%), Positives = 80/125 (64%)

Query:    24 RISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDE 83
             R +L R       + S ++S+ AEKG FVV+TTD  RF  PL YL N++ +EL +I+E+E
Sbjct:    17 RAALHRKRISFQRSSSATSSTAAEKGCFVVYTTDSTRFAFPLSYLSNSVFQELLKISEEE 76

Query:    84 FGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLH-QEQYN 142
             FG+P  GPIT P D++ ++Y++ L+Q+ +  D EKA+L+S+S    C     L  QE+  
Sbjct:    77 FGLPTGGPITSPFDSVFLEYLIKLVQRRMDADTEKALLMSISS-ARCSSQCSLKLQERST 135

Query:   143 QQPLI 147
             QQ L+
Sbjct:   136 QQLLV 140

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/100 (51%), Positives = 74/100 (74%)

Query:    41 STSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIV 100
             S+SST EKG FVV+T D+IRF  P+ YL N++++EL +I+E++FG+P  GPITLP D+  
Sbjct:    35 SSSSTVEKGCFVVYTADKIRFAFPISYLSNSVVQELLKISEEDFGLPTEGPITLPFDSAF 94

Query:   101 MKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQ 140
             ++Y+V LIQ+ + +D EKA+LLS+S    C   S+  QEQ
Sbjct:    95 LEYLVKLIQRRMDEDTEKALLLSISS-ARC---SFQPQEQ 130

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/104 (48%), Positives = 73/104 (70%)

Query:    22 RLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAE 81
             R RIS  R     +   + S+ +T EKG FVV+T D+IRF  PL YL N I++EL +I+E
Sbjct:    23 RKRISFQR-----SSITTTSSQTTVEKGCFVVYTADKIRFSFPLSYLSNTIVQELLKISE 77

Query:    82 DEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLS 125
             +EFG+P  GPITLP D++ ++Y++ LIQ+ + +D EKA+L S+S
Sbjct:    78 EEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDEDTEKALLWSIS 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 50/103 (48%), Positives = 73/103 (70%)

Query:    24 RISLPRPTAGAADAESCSTSSTA-EKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAED 82
             R +L R       +   ++S TA EKG FVV+T D+IRF  PL YL N I++EL +I+E+
Sbjct:    18 RAALKRKRISFQRSSITTSSQTAVEKGCFVVYTADKIRFSFPLSYLSNTIVQELLKISEE 77

Query:    83 EFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLS 125
             EFG+P  GPITLP D+  ++Y+++LIQ+ + +D EKA+LLS+S
Sbjct:    78 EFGLPTEGPITLPFDSAFLEYLINLIQRRMDEDTEKALLLSIS 120

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:    22 RLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAE 81
             R RIS  RP+         + S+T EKG FVV+T D  RF  P+ YL N++ +E+  I+E
Sbjct:    22 RKRISFQRPS---------TRSTTVEKGCFVVYTADNTRFAFPISYLSNSVFQEILEISE 72

Query:    82 DEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLHQEQY 141
             +EFG+P  GPITLP D++ ++Y++ LI++ +  D EKA+L+S+S    C   S   QEQ 
Sbjct:    73 EEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGDTEKALLMSISS-ARC---SLQKQEQS 128

Query:   142 NQQPLI 147
              QQ L+
Sbjct:   129 TQQLLV 134

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 40/84 (47%), Positives = 58/84 (69%)

Query:    24 RISLPRPTAGAADAESCSTSSTA-EKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAED 82
             R +L R       + S ++SS+A EKG FVV+T DQ+RF  P+ YL N++I+EL +I+E+
Sbjct:    17 RAALRRKRISFQRSNSTTSSSSAVEKGCFVVYTADQVRFAFPISYLSNSVIQELLKISEE 76

Query:    83 EFGMPGSGPITLPCDAIVMKYVVS 106
             EFG+P  GPITLP D+I   + +S
Sbjct:    77 EFGIPTEGPITLPFDSIRFSWSIS 100

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 37/97 (38%), Positives = 60/97 (61%)

Query:    47 EKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVS 106
             +KGHF V+T +  RFV+PL YL + +++ L ++AEDEFG    GP+ +PCD  +M +++ 
Sbjct:    22 KKGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHIIM 81

Query:   107 LIQK---HVAKDVEKAILLSLSVIGHCLPSSYLHQEQ 140
             L+++   H   DVEK+   S +  G  + S +  Q Q
Sbjct:    82 LVRRSMSHDYDDVEKSSTSS-TCKGASISSLFRGQSQ 117

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR55 SAUR family protein (148 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	3e-25
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	3e-08
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	7e-08
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-06

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 92.4 bits (230), Expect = 3e-25
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 12/110 (10%)

Query: 1   MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTD-QI 59
           M +  K    AKKW   AAS R R S            S S+S+   KGHF V+  +   
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGS-----------SSKSSSADVPKGHFAVYVGEETR 49

Query: 60  RFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQ 109
           RFV+P+ YL + + +EL   AE+EFG    G +T+PCD +V ++++ +++
Sbjct: 50  RFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 26  SLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQI---RFVIPLKYLENNIIRELFRIAED 82
           S+      ++ + S +TS    KGH  V+  +Q+   RFV+P+ YL + + RE    AE+
Sbjct: 19  SMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEE 78

Query: 83  EFGMPGS-GPITLPCDAIVMKYVVSLIQKH 111
           E G   S G +T+PC      ++++  Q H
Sbjct: 79  ECGFHHSMGGLTIPCREESFLHLITSHQLH 108

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 47.5 bits (113), Expect = 7e-08
 Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 48  KGHFVVHT-TDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVS 106
           KGHF V+   ++ R+++P+ +L +   + L + AE+EFG      +T+PC+ +V + + S
Sbjct: 42  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Query: 107 LI 108
           +I
Sbjct: 102 MI 103

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 39  SCSTSSTAEKGHFVVHTTDQI-----RFVIPLKYLENNIIRELFRIAEDEFGMPGS-GPI 92
           S S+S    KGH  V+  +QI     RFV+P+ +L +   +E    AE+EFG     G +
Sbjct: 28  SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 93  TLPC-DAIVMKYVVSLIQ 109
           T+PC + + +  + S + 
Sbjct: 88  TIPCREEVFLDLIASRLH 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PLN03220	105	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	85.43
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	81.47
PRK02315	233	adaptor protein; Provisional	81.13

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.4e-37  Score=227.56  Aligned_cols=99  Identities=38%  Similarity=0.694  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCCCCCCCcCCCCCeEEEEecc-ceeEeecccCcCcHHHHHHHHH
Q 039601            1 MITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTD-QIRFVIPLKYLENNIIRELFRI   79 (150)
Q Consensus         1 m~~~~kL~~~~kKWqk~aa~~rkr~s~~~~~~~~~d~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yLnhP~F~~LL~~   79 (150)
                      ||+.+|..+.++||+..++..++..+..+..          +..++|+||||||||+ ++||+||++|||||+|++||++
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~----------~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~   70 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSS----------SESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQ   70 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhccccccccccc----------ccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHH
Confidence            9999999999999999887655444333221          1258899999999997 8999999999999999999999


Q ss_pred             hHHhcCCCCCCCeEecCcHHHHHHHHHHHh
Q 039601           80 AEDEFGMPGSGPITLPCDAIVMKYVVSLIQ  109 (150)
Q Consensus        80 aeEEfG~~~~G~L~IPC~~~~Fe~vl~~i~  109 (150)
                      |||||||+++|+|+||||+++|++++|+|+
T Consensus        71 aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   71 AEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             HhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=220.78  Aligned_cols=91  Identities=26%  Similarity=0.531  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHhhhccccccccCCCCCCCCCCCCCCCCcCCCCCeEEEEecc-ceeEeecccCcCcHHHHHHHHHhHH
Q 039601            4 PKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTD-QIRFVIPLKYLENNIIRELFRIAED   82 (150)
Q Consensus         4 ~~kL~~~~kKWqk~aa~~rkr~s~~~~~~~~~d~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yLnhP~F~~LL~~aeE   82 (150)
                      .++|+|++|||+++++.+        .    .+.  -..|.++||||||||||+ ++||+||++|||||+|++||++|||
T Consensus        12 ~~~~kq~l~r~~s~~~~~--------~----~~~--~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aee   77 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQ--------G----YDE--DGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEE   77 (104)
T ss_pred             HHHHHHHHHHHHHhcccC--------C----ccc--ccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHH
Confidence            578999999999886321        0    111  124678999999999997 5899999999999999999999999


Q ss_pred             hcCCCCCCCeEecCcHHHHHHHHHHH
Q 039601           83 EFGMPGSGPITLPCDAIVMKYVVSLI  108 (150)
Q Consensus        83 EfG~~~~G~L~IPC~~~~Fe~vl~~i  108 (150)
                      ||||+++|+|+||||+++|++++|+|
T Consensus        78 EfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         78 EFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             HhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            99999999999999999999999998

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=9.9e-32  Score=200.61  Aligned_cols=71  Identities=32%  Similarity=0.583  Sum_probs=64.9

Q ss_pred             CCCCCCcCCCCCeEEEEecc---ceeEeecccCcCcHHHHHHHHHhHHhcCCCC-CCCeEecCcHHHHHHHHHHH
Q 039601           38 ESCSTSSTAEKGHFVVHTTD---QIRFVIPLKYLENNIIRELFRIAEDEFGMPG-SGPITLPCDAIVMKYVVSLI  108 (150)
Q Consensus        38 ~~~~~~~~vpkG~~~VyVGe---~~RfvVp~~yLnhP~F~~LL~~aeEEfG~~~-~G~L~IPC~~~~Fe~vl~~i  108 (150)
                      .+++.+.++||||||||||+   ++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++++..-
T Consensus        31 ~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         31 SSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             cCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            34556779999999999996   7999999999999999999999999999996 69999999999999999754

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=9.9e-32  Score=199.76  Aligned_cols=66  Identities=33%  Similarity=0.651  Sum_probs=61.7

Q ss_pred             CCCcCCCCCeEEEEecc-----ceeEeecccCcCcHHHHHHHHHhHHhcCCCC-CCCeEecCcHHHHHHHHH
Q 039601           41 STSSTAEKGHFVVHTTD-----QIRFVIPLKYLENNIIRELFRIAEDEFGMPG-SGPITLPCDAIVMKYVVS  106 (150)
Q Consensus        41 ~~~~~vpkG~~~VyVGe-----~~RfvVp~~yLnhP~F~~LL~~aeEEfG~~~-~G~L~IPC~~~~Fe~vl~  106 (150)
                      +.+.+|||||||||||+     ++||+||++|||||+|++||++|||||||++ +|+|+||||++.|++++.
T Consensus        30 ~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         30 SSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             cccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            34678999999999996     6999999999999999999999999999997 699999999999999985

>PRK02899 adaptor protein; Provisional

Probab=85.43  E-value=0.73  Score=37.53  Aligned_cols=25  Identities=28%  Similarity=0.733  Sum_probs=21.5

Q ss_pred             cHHHHHHHHHhHHhcCCCCCCCeEe
Q 039601           70 NNIIRELFRIAEDEFGMPGSGPITL   94 (150)
Q Consensus        70 hP~F~~LL~~aeEEfG~~~~G~L~I   94 (150)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4578888999999999999999853

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=81.47  E-value=0.69  Score=32.14  Aligned_cols=54  Identities=13%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             ceeEeecccCcC-c--HHHHHHHHHhHHhcCCCCCCCeEecCcHHHHHHHHHHHhcc
Q 039601           58 QIRFVIPLKYLE-N--NIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKH  111 (150)
Q Consensus        58 ~~RfvVp~~yLn-h--P~F~~LL~~aeEEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~  111 (150)
                      +++|.++.+-|. +  ..|..+++.......-..+|.+-|-++...|++|+..++.+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            577888877776 3  47888888652222234579999999999999999999993

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02315 adaptor protein; Provisional

Probab=81.13  E-value=1.2  Score=36.99  Aligned_cols=25  Identities=12%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             cHHHHHHHHHhHHhcCCCCCCCeEe
Q 039601           70 NNIIRELFRIAEDEFGMPGSGPITL   94 (150)
Q Consensus        70 hP~F~~LL~~aeEEfG~~~~G~L~I   94 (150)
                      +-+|.++|+++..|+||..+|||+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            4689999999999999999999853

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-06
 Identities = 37/173 (21%), Positives = 55/173 (31%), Gaps = 50/173 (28%)

Query: 3   TPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCST-----SSTAEKGHFVVHTTD 57
           TP ++  L  K+            LPR        E  +T     S  AE     + T D
Sbjct: 299 TPDEVKSLLLKYLDCRPQD-----LPR--------EVLTTNPRRLSIIAESIRDGLATWD 345

Query: 58  QIRFV----------IPLKYLENNIIRELFRIAEDEFGM-PGSGPITLP------CDAI- 99
             + V            L  LE    R++F    D   + P S  I          D I 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 100 --VMKYVVSLIQKH-VAKDVEKAIL----LSLSVIGHCLPSSYLHQ---EQYN 142
             VM  V  L +   V K  +++ +    + L +         LH+   + YN
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00