Citrus Sinensis ID: 039602


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130--
SKVKGRSGNTKPTTKKRATNESRILISKNEKQEEEEPPRPVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSREHSYEYNRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDRDVGEHEQREGSPVELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSEDKDSKQAEKKVAPSCANKCDTNSNPCSSGSNTSPAKITVEKLKSIVPEKCGTTKTSALKVAKKKKVAKRVVKKAINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSESSGLNGSSPENRKRRKVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSRIHPRRSSSVFTASRDLASSTRTTCTTRPRTWHRTESSSASPAPGNKSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRKPKNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG
cccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccEEcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEEEEccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEcccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccEEEEEcccccEEEEEccccccccccccccccccccccccEEEEccEEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccc
ccEcccccccccccccccccccEEEEEccccccccccccccccccccEccccEEEcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccEEEEEcccccccccccEEEEcccEEEcccccccccccccccccccccEEEccccccccccccccccEccccccccccccccccccEEEEEcccccccccHcccccccccccccccccccccHHHHcHHHHHHEEccccccccccccccccccEcccccccccccccEcccccccccccccccEEEEEEEccccEEEEEEEccccccEccccccccccccEEEEEEcccccccccccccccccEEccccEEEccccccccccccHHcccEEccccccEcccccccccccccccccccEEEcccEEEEEEccccccccccEEEEEEEEEEEEEEEEccccEcccccccccccccEccccccccccccccccccccccHHHHHHHHEEccccccccccccHccccccccEEcccccHccccccccccccccccEEccEcccccccccccccccccccccccccccccccHccccccccccccccEccccccEEEccccccccccccccccEEEEEcccccccccccccccccccEccccHHHcEEEEccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccEEEcEEcccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEEcccccccccccccEEcccccccccccccccEEcccHHccccccccccccccccEEEEcEEcEEEEEcccccccEEEEEEEEEcccccccccEEEEEEccccccccEEEEEcccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHEcccccccccccccEccccccccccccEcccHcccHHHccccccccccccccccEEEcccccccccccccccccccEEEcccccEccccccccEEEEEcccccEEEEEEEEcccEEEccccccccHHHccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccEEEccccEHHHccHHHcccccccccccccEEccccEEccccccccccHcccccccccccccEcccEEEcccccccEccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEccccccccccccccccccccccccccccccccccEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccEEEcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEcccccccccccccccccccccccEEEcccEEEEcccccccccccccccHHccccccccccccccccccccccHcccccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccHcccccccHHHHHHHHHHHccccEEEEcccccccccccEEEEccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccEEEEEcccccEEEEEcccccccccccccccccccccccEEEEEccEEEEEcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHEccccccccccccccccccccEEEEHHHHcccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHccccccccHHHcccEEEccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHcccccccccHHEHccHHHHHcHHEEEcccccccccc
skvkgrsgntkpttkkratnesrilisknekqeeeepprpvmshgfsvrssikfqfspnfspnpkpqnqyhhqrsndfahrisinddrlqqhqqtdrrhhhhrqhpvadfearqdvwdrhpriqpdhrpvvsrldrhhefdhrplspyrsmdkikheldttsyrfrerysndvvqfehtgsnnsnqrVDFVShrsqfvstsdrlnssnydnqhgsqfdsnelmsnnvrdvglnrpvfkeresrdsllgrgsnsensgdgvrafsgkrefyasdagrygnnrgsrehsyeynrtprkqvQKKSALLRIqkpyyrnrddgelhhsnyeiksgsfrgkdqvvfsdrdvgeheqregspveldvsFKSNSLVAKAIVATSSsaivsdanltpkkgntrkivmsnkdhsslqmnkpldssrklggsrdaVNNALvsedkdskqaekkvapscankcdtnsnpcssgsntspakiTVEKLKsivpekcgttkTSALKVAKKKKVAKRVVKKainptvhvsgsqptEKLDELLKADastlgapaasvlkmgvkpskdkissaamasghlddlqaytyeanmspgteqvggspetaMVSKevstdgdscapcvtkikrkrsgsisrlacsshketkidegsvnadgcLHVLNTASNFDKDLTKLLnetnfsdigglegadkhfchnghsllhensetkeysepllregrninsdlKSLEEIRRHEvhvntcssahgmntttscnigllssqekmtdsevgilnasskqpckgqmsssvnsstvegcpsvmlpgrceisafssseetdfhnasthvdhsngdkgscsgsdrviinseeinpgtgdyngrqlatNEVTIAIegghagglaNTMFSvgsrefgmsnntdkckvmtsvsdfpdamvsdmdtgpvkafSSVQSLntalsvkdsfpvEVRVTEGldvglqsssdglsvfrghnstggcseanvsessglngsspenrkrrkvsanhpgftseivpqisegpvtpdlstsgvelpsnstegqmhpeegvavsnmdtlcdsslppcpdgiTVLLDsgsaqissEVAVSVHtnasgfgddslkvepcivepslafgesdnanvrttcppgsegkqivnedpvvdgtnynnedmctekskmENIEAFVVEEQVKACnvttefvtpehqssdlnkilpatdvesdccllerGDLSRAYRALVadgdgvsttnsydemmefdsiselgspeilstvPVMNAlnheasasqisnekvcriekipseepvdegffnlsahtspsehakINLKLDDMLESAHLVAQRtvslpaqdvkdtgltlnpmsgetngkkhqashcvsrihprrsssvftasrdlasstrttcttrprtwhrtesssaspapgnksllppqnqlpkkvAKYQSMSYirkgnslvrkpapvAAVSQISHGLTSSVYWLnssgigeskktrgseggadvvdppsflrgvnaplerprtpplpvvakvpnhatsstgdytsspvaeplpngcsetksdTQKLMEINDelnfsnaalnisktpvnqtgsvnglesqgelndgtlctsnvKRITYLKRKSNQliaasngcslsvqnpdktqstasdgyykrrknqlirtpleshinqtvsladgsftsegekcAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLnsmqssksddhflyrgkvlpslfpwkrtlYWRRfvqdpvsisnnsSLSAISRKLLLLRKrdtvytrsnhgfslrKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRqengaesfaSETKIRIRSCRERIFRIGSvrykmdssrrtlqrisddsspcaagptleknakksyiprrlvigndeyvrigngnqlirdpKRRARVLASEKVRWSLHTARLRLARKRKYCQFFtrfgkcnkdngkcpyihdpskIAVCTKFLkglcsnsdcklthkvipermpdcsyflqglctnkncpyrhvhvnpnastcegflkgycadgdecrkkhsyvcptfkatgscalgakcrlhhpksrsngkksrrsrkpknthgryfgsmlvedsesqtamserptvqnngnlfvegklvdyigldvsdkeageTNDALHELldfndsgaselqlddldelikpirimnshpssystg
skvkgrsgntkpttkkratnesrilisknekqeeeepprpVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRhpriqpdhrpvvsrldrhhefdhrplspyrsmdkikhELDTTSYRFRERYSNDVVQfehtgsnnsnqrvDFVSHRSQFVStsdrlnssnydNQHGsqfdsnelmsnnVRDVglnrpvfkeresrdsllgrgsnsensgdgvrafsGKREFyasdagrygnnrgsrehsyeynrtprkqvqkksallriqkpyyrnrddgelhhsnyeiksgsfrgkdQVVFSDRDVGeheqregspveldvsfKSNSLVAKAIVatsssaivsdanltpkkgntrkivmsnkdhsslqmnkpldssrklggsRDAVNNAlvsedkdskqaekkvapscankcdtnsnpcssgsntspaKITVEKlksivpekcgttktsalkvakkkkvakrvvkkainptvhvsgsqpteKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEvstdgdscapcvtkikrkrsgsisrlacsshketkidegsvnaDGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHEnsetkeysepllregrnINSDLKSLEEIRRHEVHvntcssahgmnTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNAsthvdhsngdkgscSGSDRVIINSEeinpgtgdyngRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNtalsvkdsfpVEVRVTEGLDVGLQSSSDGLSVFRGHNStggcseanvsessglngsspenrkrrkvsanhpgftseivpqisegpVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNAsgfgddslkVEPCIVEPslafgesdnanVRTTcppgsegkqivnedpvvdgtnynNEDMCTEKSKMENIEAFVVEEQVKACNVTTefvtpehqssdlnkilpATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEasasqisnekvCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRtvslpaqdvkdTGLTLNPMsgetngkkhqashcvsrihprrsssvftasrdlasstrttcttrprtwhrtesssaspapgnksllppqnqlPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGeskktrgseggadvvdppsFLRGVNAPlerprtpplpvvakvpnhatsstgdytsspvaeplpnGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGlesqgelndgtlcTSNVKRITYLKRKSNQLIAasngcslsvqnpdktqstasdgyykRRKNQLIrtpleshinqtvsladgsftsegEKCAKDifrrsdmsqsYKAVKKICKPIRFSLVWTLNSMQssksddhflyrGKVLPSLFPWKRTLYWRRFVQdpvsisnnsslsAISRKLLLLRKRDtvytrsnhgfslrkykvlsvggsslkwsksienrskkvneeATLAVAAVekkrqengaesfasetkirirscrerifrigsvrykmdssrrtlqrisddsspcaagptleknakksyiprrlvigndeyvrigngnqlirdpkrrARVLasekvrwslHTARLRLARKRKYCQFFtrfgkcnkdngkCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKatgscalgakcrlhhpksrsngkksrrsrkpknthgryfgsmLVEDSESQTAMserptvqnngnlfVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELikpirimnshpssystg
SKVKGRSGNTKPTTKKRATNESRILISKNEKQEEEEPPRPVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINddrlqqhqqtdrrhhhhrqhPVADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSREHSYEYNRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDRDVGEHEQREGSPVELDVSFKSNSLvakaivatsssaivsDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSEDKDSKQAEKKVAPSCANKCDTNSNPCSSGSNTSPAKITVEKLKSIVPEKCGTTKTSalkvakkkkvakrvvkkaINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSESSGLNGSSPENRKRRKVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSRIHPRRSSSVFTASRDLASStrttcttrprtwhrtESSSASPAPGNKSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVsisnnsslsaisRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPksrsngkksrrsrkPKNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG
******************************************************************************************************************************************************************YRF*********************************************************************************************************************************************************************************************************LVAKAIV********************************************************************************************************************************VV**********************************************************************************************************************************VNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHS*************************************HVNTC**********SCNIG**************************************************************************************************YNGRQLATNEVTIAIEGGHAGGLANTMFSVGS********************************************TALSVKDSFPVEVRVTEGLDV**********************************************************************************************************CPDGITVLLDS*******EVAVSVHTNASGFGDDSLKVEPCIVEPSLA**********************************************ENIEAFVVEEQVKACNVTTEFVTPE****DLNKILPATDVESDCCLLERGDLSRAYRALVADGDGV******************************************************************************************L******************************************************************************************************************V***APVAAVSQISHGLTSSVYWLN***********************************************************************************************************************GTLCTSNVKRITYLKRKSNQLIA*************************************************************IF******QSYKAVKKICKPIRFSLVWTLNSMQ****DDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKW***************************************IRIRSCRERIFRIGSVRY*******************************SYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRL*************************************************GNLFVEGKLVDYIGLDVS***********HELLD*****************I****************
*******************************************HGFSVRSSIKFQF*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FP*******************************************************************************************************************IGSV****************************************VIGNDEYVRIGNG********************************KRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCR**************************************************************************************************DELIKPIRIMNS*P******
*******************NESRILISKN*************SHGFSVRSSIKFQFSPNFSPN***********SNDFAHRISINDD*******************VADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKE*******************GVRAFSGKREFYASDAGRYGNNRGSREHSYEYN**********SALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDR*************ELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSE****************NKCD*************PAKITVEKLKSIVPEKCGTTKTS**************VKKAINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPG**********************SCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNAS*******************GCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCS*************************NHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGE*************RIHPRRS***************************************KSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIG***********ADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKK************TKIRIRSCRERIFRIGSVRY*******************AAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRL********************THGRYFGSMLVE***********PTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG
************************************************RSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDD**********************************************************SPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSN*LMS*NVRDV*L****************R*****NSGDGVRAFSGKREFYASDAGRY*************NRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDR*********GSPVELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNK***SLQM*****SSRKLGGSRDAVN****************************************AKITVEKLKSIVPEKCGTTKTSALKVAKKKKVAKRVVKKAINPT******Q*********K*****LGAPAAS*L*M*VKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVS**VSTDGDSCAP*******************************NADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSES************************************************SNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADG**********EMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAH***********KLDDMLESAHLVAQRTVSLP*************************************SS****************************************LPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPV**********************************AD*VDPPSFL*****PL*RPRTPPLPVV**********************************************************************************VKRITYLKRKSNQLIAASNGCS****NPDKTQSTASDGYYKRRKNQLIRTPL**************************************VKKICKPIRFSLVWTLNSMQSSK**DHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAE***********SCRERIFRIGSVRYKMDSSRRTLQRISDD*************AKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHP*************************************************************************ALHELLDFNDSGASELQLDDLDELIKPIRIMNSH*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SKVKGRSGNTKPTTxxxxxxxxxxxxxxxxxxxxxEPPRPVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSREHSYEYNRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDRDVGEHEQREGSPVELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSEDKDSKQAEKKVAPSCANKCDTNSNPCSSGSNTSPAKITVEKLKSIVPEKCGTTKTSALKVAKKKKVAKRVVKKAINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSESSGLNGSSPENRKRRKVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSRIHPRRSSSVFTASRDLASSTRTTCTTRPRTWHRTESSSASPAPGNKSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRKPKNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query2132 2.2.26 [Sep-21-2011]
Q3ED78470 Zinc finger CCCH domain-c no no 0.215 0.978 0.596 1e-158
Q8IXZ2948 Zinc finger CCCH domain-c yes no 0.091 0.205 0.417 3e-44
Q8CHP0950 Zinc finger CCCH domain-c yes no 0.074 0.167 0.460 1e-42
P0C9451696 Uncharacterized protein A no no 0.115 0.145 0.353 2e-22
O74823376 Zinc finger CCCH domain-c yes no 0.057 0.327 0.393 2e-22
A6NMK7179 Putative cleavage and pol no no 0.055 0.659 0.375 2e-15
Q5FVR7243 Cleavage and polyadenylat no no 0.057 0.506 0.328 2e-15
O19137243 Cleavage and polyadenylat no no 0.057 0.506 0.328 3e-15
Q6DJP7269 Cleavage and polyadenylat N/A no 0.057 0.457 0.328 4e-15
Q66KE3269 Cleavage and polyadenylat no no 0.057 0.457 0.328 7e-15
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana GN=At1g21570 PE=1 SV=1 Back     alignment and function desciption
 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/471 (59%), Positives = 342/471 (72%), Gaps = 11/471 (2%)

Query: 1654 RFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISR 1713
            +FSLVWT N  Q      H +    ++P L PWKR  YWRR +    +  N SSL+ ISR
Sbjct: 8    KFSLVWTQNDPQPRMPIAH-MRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLN-ISR 65

Query: 1714 KLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEK 1773
            KL ++RKR T+YTRS +G+SLRK KVLSVGGS LKWSKSIE  S+K NEEATLAVAA  K
Sbjct: 66   KLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSK 125

Query: 1774 KRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEK 1833
            K  E  +    + T  R    RER+FR GS+RYKMDSSRRTLQRISD  SPC+      K
Sbjct: 126  KESEKQSGQNNTSTASRNHLARERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGK 185

Query: 1834 NAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKY 1893
              K+ +IP+RLVIGN+EYVR GNGNQL+RDPK+R RVLA+EKVRWSLH ARLRLA+K+KY
Sbjct: 186  GVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKY 245

Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFL 1953
            CQFFTRFGKCNKD+GKCPY+HDPSKIAVCTKFL GLC+N++CKLTHKVIPERMPDCSY+L
Sbjct: 246  CQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYL 305

Query: 1954 QGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKC 2013
            QGLC N+ CPYRHVHVNP A  C+GFLKGYC++GDECRKKHSY CP F+ATGSC+ G KC
Sbjct: 306  QGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKC 365

Query: 2014 RLHHPKSRSNGKKSRRSRKP--KNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEG 2071
            +LHHPK++S G+K +R+ +P  KN   RYF S+    SES+  +  R +   +  +F   
Sbjct: 366  KLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRST--DSEVFGME 423

Query: 2072 KLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIM 2122
             L D+I L  ++ EAG+ ND        +DS +    L  +  LI P+ +M
Sbjct: 424  SL-DFITLGTAEYEAGDDNDPATVQSISSDSES----LISIYNLITPVALM 469




Possesses RNA-binding and ribonuclease activities in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens GN=ZC3H3 PE=1 SV=3 Back     alignment and function description
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus GN=Zc3h3 PE=2 SV=1 Back     alignment and function description
>sp|P0C945|Y1158_ARATH Uncharacterized protein At1g21580 OS=Arabidopsis thaliana GN=At1g21580 PE=1 SV=1 Back     alignment and function description
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC337.12 PE=4 SV=3 Back     alignment and function description
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit 4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3 Back     alignment and function description
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1 Back     alignment and function description
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus GN=CPSF4 PE=2 SV=1 Back     alignment and function description
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1 Back     alignment and function description
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query2132
3021417582149 unnamed protein product [Vitis vinifera] 0.903 0.896 0.431 0.0
2240667912120 predicted protein [Populus trichocarpa] 0.916 0.921 0.438 0.0
2555585562030 protein with unknown function [Ricinus c 0.828 0.869 0.444 0.0
3565512132033 PREDICTED: uncharacterized protein LOC10 0.560 0.587 0.426 0.0
3565546542002 PREDICTED: uncharacterized protein LOC10 0.566 0.603 0.422 0.0
225459673 2260 PREDICTED: uncharacterized protein LOC10 0.698 0.659 0.369 0.0
4494442202118 PREDICTED: uncharacterized protein LOC10 0.504 0.508 0.400 0.0
4494926531341 PREDICTED: uncharacterized protein LOC10 0.504 0.802 0.397 0.0
3341827422166 zinc finger CCCH domain-containing prote 0.344 0.339 0.494 0.0
224082348495 predicted protein [Populus trichocarpa] 0.229 0.987 0.678 0.0
>gi|302141758|emb|CBI18961.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1361 bits (3523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/2118 (43%), Positives = 1214/2118 (57%), Gaps = 191/2118 (9%)

Query: 80   HRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRHPR----IQPDHRPVVSRLD 135
            HR+S N   L   +   R HH     P     +R    +R PR    I+ DH    +R  
Sbjct: 144  HRVS-NRTLLDDDRHRLRVHHFDNSRPEFWDPSRVSTENRPPRLYHVIRSDHETSHNR-- 200

Query: 136  RHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHT---------GSNNSNQ 186
                F+H P+SP+R++ + +H+ + +S RFR+  +     FEH          G   S+ 
Sbjct: 201  ---SFNHNPVSPFRAIGEFRHDPEGSS-RFRDELNGG---FEHKRVEELVWGRGEGRSHD 253

Query: 187  RVDFVSHRSQ---------------FVSTSDRLNSSNYDNQHGSQFDSNEL-------MS 224
              D  SH  Q               FV   D  +  NYD+++GS  D   +       +S
Sbjct: 254  DFDRHSHLVQNANKSLRNIGFGDSHFVVEPDSSSLGNYDSRYGSSRDEEFIRNGRGDGVS 313

Query: 225  NNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSR 284
             N R     +P   +R++ + L+G  +N  + G GV+ FS KR   A + G++  NRGSR
Sbjct: 314  ENQRWAHSRQP---QRDAANYLIGLENNEIDDGGGVQVFSFKRGPNALELGKF-TNRGSR 369

Query: 285  EHSYEYNRTPRKQVQKKSALLRIQ--KPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSD 342
            E S+E+ R+PRK++QKKSALLRIQ  KP  R RDDG+ ++   E  S  +RGK+ + + D
Sbjct: 370  EGSHEFTRSPRKKIQKKSALLRIQLQKPSPRKRDDGQFYYD--ESTSSQYRGKEPLEYLD 427

Query: 343  RDVGEHEQREGSPVELDVSFKSNSLVAKAIVATSSSAIVSDANL--TPKKGNTRKIVMSN 400
               G  ++RE SPVELDVSFKSNSLVAKAI+A SS  +VSD NL   P+    RKI + N
Sbjct: 428  H--GMADKRERSPVELDVSFKSNSLVAKAIMAPSSPTVVSDRNLCLIPRNRELRKITLPN 485

Query: 401  KDHSSLQMNKPLDSSRKLGGSRDAVNNALVSED---KDSKQAEKKVAPSCANKCDT-NSN 456
             D+SS Q+NK  +   K    RD + + +       KD KQ ++KV  S      T +S 
Sbjct: 486  MDNSSSQLNKLNEEPVK----RDCLPSVVADPSLCHKDPKQLKEKVTASGLETVQTFSSK 541

Query: 457  PCSSGSNTSPAKITVE-KLKSIVPEKC----GTTKTSALKVAKKKKVAKRVVKKAINPTV 511
            PCSSG+N S     VE  L S+V EK     G+   S+ KV KKKKV    ++K   P  
Sbjct: 542  PCSSGTNISLENNRVEGSLNSMVSEKVAASIGSGGMSSPKVTKKKKV----IRKVSIPIS 597

Query: 512  HVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYE 571
              S SQ T+K  E   A  S+   P+A+         K+KI+SA + S  +  +   T  
Sbjct: 598  RASNSQLTKKPGE---APGSSTLRPSAASSSNNAAHPKEKITSAGLIS--VTGVNEVTAL 652

Query: 572  ANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDE 631
            +  +   E +      + +S++  TD  S   CV ++  KR+        SS KET   E
Sbjct: 653  SKNNKVNESL-----LSNISEKSVTDTVSGQACVAELTEKRNRLSPPSGFSSQKETNFHE 707

Query: 632  GSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKE 691
            G +N +G +H LN  SN +K LT+  NET + DI G+       C NG S+  EN   K 
Sbjct: 708  GPINTEGSIHDLNVISNSEKGLTRSPNETTYIDIDGISDVSMQICQNGPSVSLENDVLKG 767

Query: 692  YSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEV 751
             SE +L  G N+N  L SLEE + HE   NT +S H +N  +S +  L+ +QEK++ S++
Sbjct: 768  SSETMLSVGGNVNVCLSSLEETKIHEGLANTNNSVHDLNIGSSSDCDLIKTQEKISTSDI 827

Query: 752  GILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSN 811
            G + A S+ PC   +S       +E      L G   +    S +E   H    +VD S+
Sbjct: 828  GTVGAVSRHPCSNHVSV-----LLENPRPFSLGGNASVPVLCS-KENKTHEGPLNVDGSS 881

Query: 812  GDKGSCSGSDRVIINSE----EINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVG 867
               G+   SD  +  S+      N G  D  G+QL+ + V +++E G     A  M S+G
Sbjct: 882  NRTGTALTSDHGLTKSQVKITASNTGIVDDAGKQLSQDGVIMSVENGAIERPAKDMASMG 941

Query: 868  SREFGMSNNTD-------KCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDS 920
                 + +  D       K K+ TS SD   +  + +   P+   +S   ++  LS    
Sbjct: 942  G-NLNVDSGKDYTPKGKKKRKIRTSQSDL--SHSAKVHVKPLNVITSRHDVDATLSCSMK 998

Query: 921  FPVEVRVTEG-LDVGLQSSSDGLSVFRGHNSTGGCSEANVS---ESSGLNGSSPENRKRR 976
             P       G L VG ++  D +SV  G++S    SEA VS      G NG+SP+ +KRR
Sbjct: 999  DPSLANSYVGSLKVGSEACEDRVSVLHGNSSMKDLSEAKVSFRDVDVGQNGTSPKLKKRR 1058

Query: 977  KVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSS 1036
            K     PGF+S + P+I +  + PD ST G E+PSNS +     EE V VS + T+  + 
Sbjct: 1059 KGFVPDPGFSSPMGPEIHKESLIPDASTIGPEVPSNSNDCLTQSEEQVPVSGI-TMSATG 1117

Query: 1037 LPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANV 1096
            L PC +G TVL ++ + + + E   SV       GDDS   +   ++PS+   E    ++
Sbjct: 1118 LQPCLEGNTVLPENRTTRGNFEAMSSV-------GDDSSANDMKFLQPSVIVEELAIPSL 1170

Query: 1097 RTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEF-V 1155
            +++CP G   + I  E P +   ++ NE M  E    E I    +EE       T +   
Sbjct: 1171 QSSCPSGLRVELI--ETPGMSSVDHQNEIMGLESGIRERISVHGLEEPGMLRRGTADCKS 1228

Query: 1156 TPEHQSSDLNKILPATDVESDCCLLERGDLSRA---YRALVADGDGVSTTNSYDEMMEF- 1211
            T   ++ DLN+   +T +E D   L + D       Y ++ ADG+GVS TNS DE+M+  
Sbjct: 1229 TAALETLDLNRRQLSTGMECDTHTLMKDDKQPTVSNYLSIAADGNGVSPTNSNDELMQSL 1288

Query: 1212 -DSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTS 1270
             D++S + SPE L  +P ++ L+ E S  QIS++K C  ++   E+P+ +    L AH S
Sbjct: 1289 PDTLSNMASPETLPLIPGLHTLDTELSVEQISDQKGCGDDRKSDEKPMVDCGSVLFAHNS 1348

Query: 1271 PSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSR 1330
             S+ ++ N KLDD + S + +  +TV   +QD K T  ++N +SGE NG K+  ++ V R
Sbjct: 1349 CSQSSESNFKLDDAIGSDNSINGKTVQPSSQDTKRTTHSVNLISGELNGSKNHLNNLVPR 1408

Query: 1331 IHPRRSSSVFTASRDLASSTRTTCTTRPRTWHRTESSSASPAPGNKSLLPPQNQLPKKVA 1390
            + P  SS     S+  ASST      +PRTW+RT +SS+S         PPQ QL KK+ 
Sbjct: 1409 VFPAPSSFFLANSKKTASSTHIA---KPRTWYRTGASSSSLKKPLSIAFPPQRQL-KKIG 1464

Query: 1391 KYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVD 1450
            K Q  SYIRKGNSLVRKPAPVA + Q SHGL+SSVY LN SG+ E +K  GSE   DV+D
Sbjct: 1465 KVQGTSYIRKGNSLVRKPAPVAVIPQGSHGLSSSVYRLNPSGVDEMRKRTGSESRTDVID 1524

Query: 1451 PP--SFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQ 1508
            P   S     +AP ERP+TPPLP   K+P   T S+   +S   A+   +G +E      
Sbjct: 1525 PSNRSSTGATDAPSERPQTPPLPYSTKLPKCTTISSVPMSSEDGAKS--SGSTE------ 1576

Query: 1509 KLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQ 1568
                                   NQTG +N LESQ  LNDG   +S +KR+TY+KRKSNQ
Sbjct: 1577 -----------------------NQTGLINNLESQSVLNDGNSESSKLKRVTYVKRKSNQ 1613

Query: 1569 LIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEK 1628
            L+AASN   +SVQN DKT + +SD                          DGS  SEG++
Sbjct: 1614 LVAASNPHDMSVQNADKTPALSSDD-------------------------DGS-NSEGQR 1647

Query: 1629 CAKDIFRRSDMSQ-SYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWK 1687
              K +  +S   + S K + K  +P +FSLVWTL   QSS+ D + ++   VLPSLFPWK
Sbjct: 1648 PPKLVSSKSSSKRPSDKVLSKTREPSKFSLVWTLRGAQSSEKDGNSVHSQGVLPSLFPWK 1707

Query: 1688 RTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSL 1747
            R  YWR F+ +P SI N++SLS ISRKLLLLRKRDTVYTRS  GFSLRK KVL VGGSSL
Sbjct: 1708 RATYWRSFMHNPASIPNSTSLSMISRKLLLLRKRDTVYTRSTGGFSLRKSKVLGVGGSSL 1767

Query: 1748 KWSKSIENRSKKVNEEATLAVAAVE-KKRQENGAESFASETKIRIRSCRERIFRIGSVRY 1806
            KWSKSIE +SKK NEEATLAVAAVE KKR++NGA S  SET+ R  S RERIFR+GSVRY
Sbjct: 1768 KWSKSIERQSKKANEEATLAVAAVERKKREQNGAASVISETESRNHSSRERIFRVGSVRY 1827

Query: 1807 KMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKR 1866
            KMDSSRRTLQRISD  S C+A    EKNAKK YIPRRL+IGNDEYV+IGNGNQLIR+PK+
Sbjct: 1828 KMDSSRRTLQRISDGDSTCSAALQSEKNAKKPYIPRRLLIGNDEYVQIGNGNQLIRNPKK 1887

Query: 1867 RARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFL 1926
            R R+LASEKVRWSLHTARLRLA+K KYCQFFTRFGKCNKD+GKCPYIHDPSKIAVCTKFL
Sbjct: 1888 RTRILASEKVRWSLHTARLRLAKKWKYCQFFTRFGKCNKDDGKCPYIHDPSKIAVCTKFL 1947

Query: 1927 KGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCAD 1986
             GLCSN +CKLTHKVIPERMPDCSYFLQGLC N++CPYRHV+VNPNAS CEGFL+GYCAD
Sbjct: 1948 NGLCSNPNCKLTHKVIPERMPDCSYFLQGLCNNESCPYRHVNVNPNASVCEGFLRGYCAD 2007

Query: 1987 GDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRKPKNTHGRYFGSMLV 2046
            G+ECRKKHSYVCP F+ATGSC LG+KC+LHHPK+RS GKK ++SR+  N  GRYFG   V
Sbjct: 2008 GNECRKKHSYVCPIFEATGSCPLGSKCKLHHPKNRSKGKKKKQSRE-LNAQGRYFGFRHV 2066

Query: 2047 EDSESQTAMSERPTVQNNGNL-FVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGAS 2105
             + + +  +SE+ T +NN ++ F EG+  DYI LDVSD++ G  N    +      S  S
Sbjct: 2067 NNRDPEKVVSEKDTAKNNDDISFQEGRFADYISLDVSDEDIGSINGPRTQQTTLFGSEPS 2126

Query: 2106 ELQLDDLDELIKPIRIMN 2123
             L LDDLDELIKP+ IMN
Sbjct: 2127 YLHLDDLDELIKPVLIMN 2144




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066791|ref|XP_002302217.1| predicted protein [Populus trichocarpa] gi|222843943|gb|EEE81490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558556|ref|XP_002520303.1| protein with unknown function [Ricinus communis] gi|223540522|gb|EEF42089.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|356551213|ref|XP_003543972.1| PREDICTED: uncharacterized protein LOC100788859 [Glycine max] Back     alignment and taxonomy information
>gi|356554654|ref|XP_003545659.1| PREDICTED: uncharacterized protein LOC100802468 [Glycine max] Back     alignment and taxonomy information
>gi|225459673|ref|XP_002284626.1| PREDICTED: uncharacterized protein LOC100262507 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444220|ref|XP_004139873.1| PREDICTED: uncharacterized protein LOC101206853 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449492653|ref|XP_004159062.1| PREDICTED: uncharacterized protein LOC101224393 [Cucumis sativus] Back     alignment and taxonomy information
>gi|334182742|ref|NP_173577.2| zinc finger CCCH domain-containing protein [Arabidopsis thaliana] gi|332191999|gb|AEE30120.1| zinc finger CCCH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224082348|ref|XP_002306656.1| predicted protein [Populus trichocarpa] gi|222856105|gb|EEE93652.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query2132
ZFIN|ZDB-GENE-030131-9399929 zc3h3 "zinc finger CCCH-type c 0.101 0.232 0.420 3.6e-43
UNIPROTKB|F1NHU3377 ZC3H3 "Uncharacterized protein 0.070 0.397 0.506 3.4e-42
UNIPROTKB|I3LVF0438 I3LVF0 "Uncharacterized protei 0.075 0.369 0.471 1.6e-39
UNIPROTKB|Q8IXZ2948 ZC3H3 "Zinc finger CCCH domain 0.090 0.204 0.415 1.6e-37
UNIPROTKB|F1PNB5838 ZC3H3 "Uncharacterized protein 0.075 0.193 0.485 2.8e-37
MGI|MGI:2663721950 Zc3h3 "zinc finger CCCH type c 0.087 0.196 0.435 3.3e-36
UNIPROTKB|F1MXR8944 ZC3H3 "Uncharacterized protein 0.086 0.194 0.437 4e-34
RGD|1307276952 Zc3h3 "zinc finger CCCH type c 0.072 0.161 0.478 5.2e-34
DICTYBASE|DDB_G0279181611 DDB_G0279181 [Dictyostelium di 0.087 0.304 0.355 1.1e-26
FB|FBgn0035900597 ZC3H3 "ZC3H3" [Drosophila mela 0.113 0.407 0.320 9.4e-26
ZFIN|ZDB-GENE-030131-9399 zc3h3 "zinc finger CCCH-type containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 486 (176.1 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
 Identities = 95/226 (42%), Positives = 125/226 (55%)

Query:  1871 LASEKVRWSLHTARLRLARKRK---YCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLK 1927
             +AS  V+ SL   R    +K+K   YC ++ RFGKCN  N  CPYIHDP K+AVCT+FL+
Sbjct:   673 VASRAVQRSLAIIRHAKQKKQKAKQYCMYYNRFGKCNHGN-TCPYIHDPDKVAVCTRFLR 731

Query:  1928 GLCSNSD--CKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCA 1985
             G C  +D  C  +HKV  E+MP CSYFL+G+C N +CPY HV+V+  A  CE F++GYC 
Sbjct:   732 GTCKKTDGTCPFSHKVAKEKMPVCSYFLKGICNNSSCPYSHVYVSRKAEVCEDFVRGYCP 791

Query:  1986 DGDECRKKHSYVCPTFKATGSCALGAKCRLHHPXXXXXXXXXXXXXXPKNTHGRYFGSML 2045
              GD+C+KKH+ VCP F +TG C  G+KC+LHH                K    R    +L
Sbjct:   792 QGDKCKKKHTLVCPDFSSTGVCPRGSKCKLHHRQSKKRTGSNASYGAAKKACTR---DVL 848

Query:  2046 VEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETND 2091
                  +QT  SE        +     KL  +I L  S  +  E  D
Sbjct:   849 RSSDAAQTQSSESTLADEGSSCSRPEKLPSFISLS-SSPDGSENPD 893


GO:0003676 "nucleic acid binding" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|F1NHU3 ZC3H3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LVF0 I3LVF0 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IXZ2 ZC3H3 "Zinc finger CCCH domain-containing protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PNB5 ZC3H3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2663721 Zc3h3 "zinc finger CCCH type containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXR8 ZC3H3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307276 Zc3h3 "zinc finger CCCH type containing 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279181 DDB_G0279181 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0035900 ZC3H3 "ZC3H3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_II000715
hypothetical protein (2120 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 2132
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 99.87
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.5
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 99.22
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.16
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 99.06
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 98.89
KOG4791 667 consensus Uncharacterized conserved protein [Funct 98.62
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.43
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 98.37
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 98.31
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 98.18
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 97.81
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 97.63
KOG4791 667 consensus Uncharacterized conserved protein [Funct 97.55
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 96.94
KOG1763343 consensus Uncharacterized conserved protein, conta 96.85
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 96.66
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 96.61
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 96.59
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 95.9
smart0035627 ZnF_C3H1 zinc finger. 95.42
KOG1763343 consensus Uncharacterized conserved protein, conta 95.3
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 95.2
KOG2333 614 consensus Uncharacterized conserved protein [Gener 95.07
smart0035627 ZnF_C3H1 zinc finger. 94.92
COG5252299 Uncharacterized conserved protein, contains CCCH-t 94.7
KOG2185 486 consensus Predicted RNA-processing protein, contai 89.99
COG5152259 Uncharacterized conserved protein, contains RING a 88.09
KOG2185 486 consensus Predicted RNA-processing protein, contai 87.76
KOG2333 614 consensus Uncharacterized conserved protein [Gener 87.37
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 82.64
COG5252299 Uncharacterized conserved protein, contains CCCH-t 81.71
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 80.67
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
Probab=99.87  E-value=9.6e-23  Score=221.50  Aligned_cols=219  Identities=32%  Similarity=0.693  Sum_probs=166.9

Q ss_pred             hhcccchHHHHHHHHHH-HHhhhcCCcccccccccccccceeEEEEEccEEEEEcCCCCeeEecCCCCCCCCCCCccccc
Q 039602         1756 RSKKVNEEATLAVAAVE-KKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKN 1834 (2132)
Q Consensus      1756 ~s~k~~e~atla~a~~e-kkr~~~~a~~~~~~t~~R~~s~r~R~v~I~GVrF~vd~sG~KLvRvsd~~s~~sa~~~s~~~ 1834 (2132)
                      +.+|+|-|.-.|-.|.| |--++.|.++       |-+.+-.+.|.|+|..|..-.+..|....-               
T Consensus       115 qarkanlesyraklekeyktlaenkiqq-------rlsdgtkqlvtidglqyitgvsdtkwlefv---------------  172 (377)
T KOG1492|consen  115 QARKANLESYRAKLEKEYKTLAENKIQQ-------RLSDGTKQLVTIDGLQYITGVSDTKWLEFV---------------  172 (377)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHH-------HhccCceeEEEecceeeecccccchhhhhh---------------
Confidence            45567777777777777 6666666552       333456778999999997544333221111               


Q ss_pred             ccccCCCceeeeCCeeEEEecCCcccccChhhhhHHhhcccchhhhhhhhhccccCccccccccccccccCCCCCCCCCC
Q 039602         1835 AKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIH 1914 (2132)
Q Consensus      1835 a~~~~tPkRv~IgGvtYvRsKnGNlLvR~pkrR~r~vas~kvrwSl~t~R~rl~KKtq~CkfFlRTGkCkKgG~~CpFiH 1914 (2132)
                      +....-|+-+.-++..|       +| .    ..|.+..           -.-.+...+|+||..-|.|-+ |..|+|.|
T Consensus       173 sakgqcpkylywnnksy-------ll-k----kkrflke-----------vgnspsavycryynangicgk-gaacrfvh  228 (377)
T KOG1492|consen  173 SAKGQCPKYLYWNNKSY-------LL-K----KKRFLKE-----------VGNSPSAVYCRYYNANGICGK-GAACRFVH  228 (377)
T ss_pred             hhcCCCCceeEEcChhH-------HH-H----HHHHHHH-----------hCCCCceeEEEEecCCCcccC-Cceeeeec
Confidence            11112344444443333       22 0    1111111           012356789999999999999 89999999


Q ss_pred             CCCccccccccccCccCCC-CcccccccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCccCcccc-ccCCCCCCcccC
Q 039602         1915 DPSKIAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFL-KGYCADGDECRK 1992 (2132)
Q Consensus      1915 DPsKvAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLnG~CsNdnCPYsHVK~spKapVCrdFl-qGyCpKGdkCpF 1992 (2132)
                      .|.+..+|+.||+|.|.+. +|.++|+..+.+.|.|+||+-|.|.+++|+|.|+.-...+|+|-.|. .|+|..|..|+.
T Consensus       229 eptrkticpkflngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelgtsckn  308 (377)
T KOG1492|consen  229 EPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKN  308 (377)
T ss_pred             cccccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceecccccccc
Confidence            9999999999999999986 99999999999999999999999999999999999989999999996 699999999999


Q ss_pred             CCCccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602         1993 KHSYVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus      1993 RHv~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
                      .|...|.+|+..|.|.+ +.|.+.|+--.
T Consensus       309 qhilqctdyamfgscnn-pqcslyhgavs  336 (377)
T KOG1492|consen  309 QHILQCTDYAMFGSCNN-PQCSLYHGAVS  336 (377)
T ss_pred             ceeeeecchhhhcCCCC-Ccceeecceec
Confidence            99999999999999997 89999997543



>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query2132
2d9n_A77 Solution Structure Of Ccch Type Zinc-Finger Domain 1e-04
2rhk_C72 Crystal Structure Of Influenza A Ns1a Protein In Co 3e-04
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In Cleavage And Polyadenylation Specificity Factor Length = 77 Back     alignment and structure

Iteration: 1

Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Query: 1918 KIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHV 1967 K VC +L+GLC D C+ H+ +MP+C ++ + G C+NK CP+ H+ Sbjct: 9 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 60
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex With F2f3 Fragment Of Human Cellular Factor Cpsf30, Northeast Structural Genomics Targets Or8c And Hr6309a Length = 72 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query2132
2rhk_C72 Cleavage and polyadenylation specificity factor su 1e-17
2rhk_C72 Cleavage and polyadenylation specificity factor su 1e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 8e-06
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-17
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 3e-08
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 7e-04
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 8e-13
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 3e-12
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 8e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 2e-07
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 3e-07
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 9e-06
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 3e-07
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 2e-06
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 5e-06
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 7e-07
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 9e-06
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 1e-05
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 2e-05
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 1e-04
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
 Score = 78.0 bits (192), Expect = 1e-17
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1914 HDPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHV 1967
                K  VC  +L+GLC   D C+  H+    +M +C ++ + G C+NK CP+ H+
Sbjct: 11   MSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKECPFLHI 66


>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80 Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Length = 229 Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Length = 229 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83 Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query2132
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.28
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.15
2rhk_C72 Cleavage and polyadenylation specificity factor su 98.92
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.84
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.73
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.71
2rhk_C72 Cleavage and polyadenylation specificity factor su 98.71
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.71
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.67
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.64
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 98.63
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 98.62
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.6
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.56
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.5
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.44
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.47
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.33
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 96.38
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 95.84
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 94.23
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 94.19
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 89.04
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 87.5
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 81.6
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 80.18
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.28  E-value=1.3e-12  Score=122.40  Aligned_cols=64  Identities=30%  Similarity=0.806  Sum_probs=34.4

Q ss_pred             cccccccccCccCCC-CcccccccCCCCCCCCccccc-CCCCCCCCCCCCCCCCCCCccCcccccc
Q 039602         1919 IAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKG 1982 (2132)
Q Consensus      1919 vAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLn-G~CsNdnCPYsHVK~spKapVCrdFlqG 1982 (2132)
                      ..+|++|++|.|.+| .|+|+|+....++++|+||++ |.|.++.|+|.|+.+..++++|++|++|
T Consensus        10 ~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~C~~f~~g   75 (77)
T 2d9n_A           10 TVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWSGPS   75 (77)
T ss_dssp             TSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSSSSCCTTT
T ss_pred             ceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccCCCCeeccCCCccccCCCCcccccC
Confidence            344444444555444 455555544445555655555 5665556666665555555555555544



>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query2132
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 96.69
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 96.32
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.3
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 96.09
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.05
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 95.79
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 95.38
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 95.0
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 91.16
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 86.14
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 85.45
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.69  E-value=0.00028  Score=58.29  Aligned_cols=29  Identities=31%  Similarity=0.752  Sum_probs=25.4

Q ss_pred             CccccCCCCcCcCCCCCCCCCCCCCCCCC
Q 039602         1995 SYVCPTFKATGSCALGAKCRLHHPKSRSN 2023 (2132)
Q Consensus      1995 v~eCPDFa~TGsCprGdkCKFaHperesr 2023 (2132)
                      ..+|++|...|.|++|+.|.|+|++.+.+
T Consensus         9 T~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           9 TELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             cccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            36799998899999999999999998864



>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure