Citrus Sinensis ID: 039602

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130--

SKVKGRSGNTKPTTKKRATNESRILISKNEKQEEEEPPRPVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSREHSYEYNRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDRDVGEHEQREGSPVELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSEDKDSKQAEKKVAPSCANKCDTNSNPCSSGSNTSPAKITVEKLKSIVPEKCGTTKTSALKVAKKKKVAKRVVKKAINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSESSGLNGSSPENRKRRKVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSRIHPRRSSSVFTASRDLASSTRTTCTTRPRTWHRTESSSASPAPGNKSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRKPKNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG

cccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccEEcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEEEEccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEcccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccEEEEEcccccEEEEEccccccccccccccccccccccccEEEEccEEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccc

ccEcccccccccccccccccccEEEEEccccccccccccccccccccEccccEEEcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccEEEEEcccccccccccEEEEcccEEEcccccccccccccccccccccEEEccccccccccccccccEccccccccccccccccccEEEEEcccccccccHcccccccccccccccccccccHHHHcHHHHHHEEccccccccccccccccccEcccccccccccccEcccccccccccccccEEEEEEEccccEEEEEEEccccccEccccccccccccEEEEEEcccccccccccccccccEEccccEEEccccccccccccHHcccEEccccccEcccccccccccccccccccEEEcccEEEEEEccccccccccEEEEEEEEEEEEEEEEccccEcccccccccccccEccccccccccccccccccccccHHHHHHHHEEccccccccccccHccccccccEEcccccHccccccccccccccccEEccEcccccccccccccccccccccccccccccccHccccccccccccccEccccccEEEccccccccccccccccEEEEEcccccccccccccccccccEccccHHHcEEEEccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccEEEcEEcccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEEcccccccccccccEEcccccccccccccccEEcccHHccccccccccccccccEEEEcEEcEEEEEcccccccEEEEEEEEEcccccccccEEEEEEccccccccEEEEEcccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHEcccccccccccccEccccccccccccEcccHcccHHHccccccccccccccccEEEcccccccccccccccccccEEEcccccEccccccccEEEEEcccccEEEEEEEEcccEEEccccccccHHHccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccEEEccccEHHHccHHHcccccccccccccEEccccEEccccccccccHcccccccccccccEcccEEEcccccccEccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEccccccccccccccccccccccccccccccccccEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccEEEcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEcccccccccccccccccccccccEEEcccEEEEcccccccccccccccHHccccccccccccccccccccccHcccccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccHcccccccHHHHHHHHHHHccccEEEEcccccccccccEEEEccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccEEEEEcccccEEEEEcccccccccccccccccccccccEEEEEccEEEEEcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHEccccccccccccccccccccEEEEHHHHcccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHccccccccHHHcccEEEccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHcccccccccHHEHccHHHHHcHHEEEcccccccccc

skvkgrsgntkpttkkratnesrilisknekqeeeepprpvmshgfsvrssikfqfspnfspnpkpqnqyhhqrsndfahrisinddrlqqhqqtdrrhhhhrqhpvadfearqdvwdrhpriqpdhrpvvsrldrhhefdhrplspyrsmdkikheldttsyrfrerysndvvqfehtgsnnsnqrVDFVShrsqfvstsdrlnssnydnqhgsqfdsnelmsnnvrdvglnrpvfkeresrdsllgrgsnsensgdgvrafsgkrefyasdagrygnnrgsrehsyeynrtprkqvQKKSALLRIqkpyyrnrddgelhhsnyeiksgsfrgkdqvvfsdrdvgeheqregspveldvsFKSNSLVAKAIVATSSsaivsdanltpkkgntrkivmsnkdhsslqmnkpldssrklggsrdaVNNALvsedkdskqaekkvapscankcdtnsnpcssgsntspakiTVEKLKsivpekcgttkTSALKVAKKKKVAKRVVKKainptvhvsgsqptEKLDELLKADastlgapaasvlkmgvkpskdkissaamasghlddlqaytyeanmspgteqvggspetaMVSKevstdgdscapcvtkikrkrsgsisrlacsshketkidegsvnadgcLHVLNTASNFDKDLTKLLnetnfsdigglegadkhfchnghsllhensetkeysepllregrninsdlKSLEEIRRHEvhvntcssahgmntttscnigllssqekmtdsevgilnasskqpckgqmsssvnsstvegcpsvmlpgrceisafssseetdfhnasthvdhsngdkgscsgsdrviinseeinpgtgdyngrqlatNEVTIAIegghagglaNTMFSvgsrefgmsnntdkckvmtsvsdfpdamvsdmdtgpvkafSSVQSLntalsvkdsfpvEVRVTEGldvglqsssdglsvfrghnstggcseanvsessglngsspenrkrrkvsanhpgftseivpqisegpvtpdlstsgvelpsnstegqmhpeegvavsnmdtlcdsslppcpdgiTVLLDsgsaqissEVAVSVHtnasgfgddslkvepcivepslafgesdnanvrttcppgsegkqivnedpvvdgtnynnedmctekskmENIEAFVVEEQVKACnvttefvtpehqssdlnkilpatdvesdccllerGDLSRAYRALVadgdgvsttnsydemmefdsiselgspeilstvPVMNAlnheasasqisnekvcriekipseepvdegffnlsahtspsehakINLKLDDMLESAHLVAQRtvslpaqdvkdtgltlnpmsgetngkkhqashcvsrihprrsssvftasrdlasstrttcttrprtwhrtesssaspapgnksllppqnqlpkkvAKYQSMSYirkgnslvrkpapvAAVSQISHGLTSSVYWLnssgigeskktrgseggadvvdppsflrgvnaplerprtpplpvvakvpnhatsstgdytsspvaeplpngcsetksdTQKLMEINDelnfsnaalnisktpvnqtgsvnglesqgelndgtlctsnvKRITYLKRKSNQliaasngcslsvqnpdktqstasdgyykrrknqlirtpleshinqtvsladgsftsegekcAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLnsmqssksddhflyrgkvlpslfpwkrtlYWRRfvqdpvsisnnsSLSAISRKLLLLRKrdtvytrsnhgfslrKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRqengaesfaSETKIRIRSCRERIFRIGSvrykmdssrrtlqrisddsspcaagptleknakksyiprrlvigndeyvrigngnqlirdpKRRARVLASEKVRWSLHTARLRLARKRKYCQFFtrfgkcnkdngkcpyihdpskIAVCTKFLkglcsnsdcklthkvipermpdcsyflqglctnkncpyrhvhvnpnastcegflkgycadgdecrkkhsyvcptfkatgscalgakcrlhhpksrsngkksrrsrkpknthgryfgsmlvedsesqtamserptvqnngnlfvegklvdyigldvsdkeageTNDALHELldfndsgaselqlddldelikpirimnshpssystg

skvkgrsgntkpttkkratnesrilisknekqeeeepprpVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRhpriqpdhrpvvsrldrhhefdhrplspyrsmdkikhELDTTSYRFRERYSNDVVQfehtgsnnsnqrvDFVSHRSQFVStsdrlnssnydNQHGsqfdsnelmsnnVRDVglnrpvfkeresrdsllgrgsnsensgdgvrafsGKREFyasdagrygnnrgsrehsyeynrtprkqvqkksallriqkpyyrnrddgelhhsnyeiksgsfrgkdQVVFSDRDVGeheqregspveldvsfKSNSLVAKAIVatsssaivsdanltpkkgntrkivmsnkdhsslqmnkpldssrklggsRDAVNNAlvsedkdskqaekkvapscankcdtnsnpcssgsntspaKITVEKlksivpekcgttktsalkvakkkkvakrvvkkainptvhvsgsqpteKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEvstdgdscapcvtkikrkrsgsisrlacsshketkidegsvnaDGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHEnsetkeysepllregrnINSDLKSLEEIRRHEVHvntcssahgmnTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNAsthvdhsngdkgscSGSDRVIINSEeinpgtgdyngRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNtalsvkdsfpVEVRVTEGLDVGLQSSSDGLSVFRGHNStggcseanvsessglngsspenrkrrkvsanhpgftseivpqisegpVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNAsgfgddslkVEPCIVEPslafgesdnanVRTTcppgsegkqivnedpvvdgtnynNEDMCTEKSKMENIEAFVVEEQVKACNVTTefvtpehqssdlnkilpATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEasasqisnekvCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRtvslpaqdvkdTGLTLNPMsgetngkkhqashcvsrihprrsssvftasrdlasstrttcttrprtwhrtesssaspapgnksllppqnqlPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGeskktrgseggadvvdppsFLRGVNAPlerprtpplpvvakvpnhatsstgdytsspvaeplpnGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGlesqgelndgtlcTSNVKRITYLKRKSNQLIAasngcslsvqnpdktqstasdgyykRRKNQLIrtpleshinqtvsladgsftsegEKCAKDifrrsdmsqsYKAVKKICKPIRFSLVWTLNSMQssksddhflyrGKVLPSLFPWKRTLYWRRFVQdpvsisnnsslsAISRKLLLLRKRDtvytrsnhgfslrkykvlsvggsslkwsksienrskkvneeATLAVAAVekkrqengaesfasetkirirscrerifrigsvrykmdssrrtlqrisddsspcaagptleknakksyiprrlvigndeyvrigngnqlirdpkrrARVLasekvrwslHTARLRLARKRKYCQFFtrfgkcnkdngkCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKatgscalgakcrlhhpksrsngkksrrsrkpknthgryfgsmLVEDSESQTAMserptvqnngnlfVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELikpirimnshpssystg

SKVKGRSGNTKPTTKKRATNESRILISKNEKQEEEEPPRPVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINddrlqqhqqtdrrhhhhrqhPVADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSREHSYEYNRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDRDVGEHEQREGSPVELDVSFKSNSLvakaivatsssaivsDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSEDKDSKQAEKKVAPSCANKCDTNSNPCSSGSNTSPAKITVEKLKSIVPEKCGTTKTSalkvakkkkvakrvvkkaINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSESSGLNGSSPENRKRRKVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSRIHPRRSSSVFTASRDLASStrttcttrprtwhrtESSSASPAPGNKSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVsisnnsslsaisRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPksrsngkksrrsrkPKNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG

******************************************************************************************************************************************************************YRF*********************************************************************************************************************************************************************************************************LVAKAIV********************************************************************************************************************************VV**********************************************************************************************************************************VNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHS*************************************HVNTC**********SCNIG**************************************************************************************************YNGRQLATNEVTIAIEGGHAGGLANTMFSVGS********************************************TALSVKDSFPVEVRVTEGLDV**********************************************************************************************************CPDGITVLLDS*******EVAVSVHTNASGFGDDSLKVEPCIVEPSLA**********************************************ENIEAFVVEEQVKACNVTTEFVTPE****DLNKILPATDVESDCCLLERGDLSRAYRALVADGDGV******************************************************************************************L******************************************************************************************************************V***APVAAVSQISHGLTSSVYWLN***********************************************************************************************************************GTLCTSNVKRITYLKRKSNQLIA*************************************************************IF******QSYKAVKKICKPIRFSLVWTLNSMQ****DDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKW***************************************IRIRSCRERIFRIGSVRY*******************************SYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRL*************************************************GNLFVEGKLVDYIGLDVS***********HELLD*****************I****************

*******************************************HGFSVRSSIKFQF*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FP*******************************************************************************************************************IGSV****************************************VIGNDEYVRIGNG********************************KRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCR**************************************************************************************************DELIKPIRIMNS*P******

*******************NESRILISKN*************SHGFSVRSSIKFQFSPNFSPN***********SNDFAHRISINDD*******************VADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKE*******************GVRAFSGKREFYASDAGRYGNNRGSREHSYEYN**********SALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDR*************ELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSE****************NKCD*************PAKITVEKLKSIVPEKCGTTKTS**************VKKAINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPG**********************SCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNAS*******************GCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCS*************************NHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGE*************RIHPRRS***************************************KSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIG***********ADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKK************TKIRIRSCRERIFRIGSVRY*******************AAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRL********************THGRYFGSMLVE***********PTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG

************************************************RSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDD**********************************************************SPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSN*LMS*NVRDV*L****************R*****NSGDGVRAFSGKREFYASDAGRY*************NRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDR*********GSPVELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNK***SLQM*****SSRKLGGSRDAVN****************************************AKITVEKLKSIVPEKCGTTKTSALKVAKKKKVAKRVVKKAINPT******Q*********K*****LGAPAAS*L*M*VKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVS**VSTDGDSCAP*******************************NADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSES************************************************SNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADG**********EMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAH***********KLDDMLESAHLVAQRTVSLP*************************************SS****************************************LPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPV**********************************AD*VDPPSFL*****PL*RPRTPPLPVV**********************************************************************************VKRITYLKRKSNQLIAASNGCS****NPDKTQSTASDGYYKRRKNQLIRTPL**************************************VKKICKPIRFSLVWTLNSMQSSK**DHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAE***********SCRERIFRIGSVRYKMDSSRRTLQRISDD*************AKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHP*************************************************************************ALHELLDFNDSGASELQLDDLDELIKPIRIMNSH*******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SKVKGRSGNTKPTTxxxxxxxxxxxxxxxxxxxxxEPPRPVMSHGFSVRSSIKFQFSPNFSPNPKPQNQYHHQRSNDFAHRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRHPRIQPDHRPVVSRLDRHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHTGSNNSNQRVDFVSHRSQFVSTSDRLNSSNYDNQHGSQFDSNELMSNNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSREHSYEYNRTPRKQVQKKSALLRIQKPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSDRDVGEHEQREGSPVELDVSFKSNSLVAKAIVATSSSAIVSDANLTPKKGNTRKIVMSNKDHSSLQMNKPLDSSRKLGGSRDAVNNALVSEDKDSKQAEKKVAPSCANKCDTNSNPCSSGSNTSPAKITVEKLKSIVPEKCGTTKTSALKVAKKKKVAKRVVKKAINPTVHVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYEANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDEGSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKEYSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEVGILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSNGDKGSCSGSDRVIINSEEINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVGSREFGMSNNTDKCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDSFPVEVRVTEGLDVGLQSSSDGLSVFRGHNSTGGCSEANVSESSGLNGSSPENRKRRKVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSSLPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANVRTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEFVTPEHQSSDLNKILPATDVESDCCLLERGDLSRAYRALVADGDGVSTTNSYDEMMEFDSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTSPSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSRIHPRRSSSVFTASRDLASSTRTTCTTRPRTWHRTESSSASPAPGNKSLLPPQNQLPKKVAKYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVDPPSFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEKCAKDIFRRSDMSQSYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEKKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRKPKNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIMNSHPSSYSTG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2132	2.2.26 [Sep-21-2011]
Q3ED78		470	Zinc finger CCCH domain-c	no	no	0.215	0.978	0.596	1e-158
Q8IXZ2		948	Zinc finger CCCH domain-c	yes	no	0.091	0.205	0.417	3e-44
Q8CHP0		950	Zinc finger CCCH domain-c	yes	no	0.074	0.167	0.460	1e-42
P0C945		1696	Uncharacterized protein A	no	no	0.115	0.145	0.353	2e-22
O74823		376	Zinc finger CCCH domain-c	yes	no	0.057	0.327	0.393	2e-22
A6NMK7		179	Putative cleavage and pol	no	no	0.055	0.659	0.375	2e-15
Q5FVR7		243	Cleavage and polyadenylat	no	no	0.057	0.506	0.328	2e-15
O19137		243	Cleavage and polyadenylat	no	no	0.057	0.506	0.328	3e-15
Q6DJP7		269	Cleavage and polyadenylat	N/A	no	0.057	0.457	0.328	4e-15
Q66KE3		269	Cleavage and polyadenylat	no	no	0.057	0.457	0.328	7e-15

>sp\|Q3ED78\|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana GN=At1g21570 PE=1 SV=1	Back alignment and function desciption

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/471 (59%), Positives = 342/471 (72%), Gaps = 11/471 (2%)

Query: 1654 RFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISR 1713
            +FSLVWT N  Q      H +    ++P L PWKR  YWRR +    +  N SSL+ ISR
Sbjct: 8    KFSLVWTQNDPQPRMPIAH-MRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLN-ISR 65

Query: 1714 KLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEK 1773
            KL ++RKR T+YTRS +G+SLRK KVLSVGGS LKWSKSIE  S+K NEEATLAVAA  K
Sbjct: 66   KLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSK 125

Query: 1774 KRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEK 1833
            K  E  +    + T  R    RER+FR GS+RYKMDSSRRTLQRISD  SPC+      K
Sbjct: 126  KESEKQSGQNNTSTASRNHLARERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGK 185

Query: 1834 NAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKY 1893
              K+ +IP+RLVIGN+EYVR GNGNQL+RDPK+R RVLA+EKVRWSLH ARLRLA+K+KY
Sbjct: 186  GVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKY 245

Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFL 1953
            CQFFTRFGKCNKD+GKCPY+HDPSKIAVCTKFL GLC+N++CKLTHKVIPERMPDCSY+L
Sbjct: 246  CQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYL 305

Query: 1954 QGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKC 2013
            QGLC N+ CPYRHVHVNP A  C+GFLKGYC++GDECRKKHSY CP F+ATGSC+ G KC
Sbjct: 306  QGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKC 365

Query: 2014 RLHHPKSRSNGKKSRRSRKP--KNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEG 2071
            +LHHPK++S G+K +R+ +P  KN   RYF S+    SES+  +  R +   +  +F   
Sbjct: 366  KLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRST--DSEVFGME 423

Query: 2072 KLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIM 2122
             L D+I L  ++ EAG+ ND        +DS +    L  +  LI P+ +M
Sbjct: 424  SL-DFITLGTAEYEAGDDNDPATVQSISSDSES----LISIYNLITPVALM 469

Possesses RNA-binding and ribonuclease activities in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp\|Q8IXZ2\|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens GN=ZC3H3 PE=1 SV=3	Back alignment and function description

>sp\|Q8CHP0\|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus GN=Zc3h3 PE=2 SV=1	Back alignment and function description

>sp\|P0C945\|Y1158_ARATH Uncharacterized protein At1g21580 OS=Arabidopsis thaliana GN=At1g21580 PE=1 SV=1	Back alignment and function description

>sp\|O74823\|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC337.12 PE=4 SV=3	Back alignment and function description

>sp\|A6NMK7\|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit 4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3	Back alignment and function description

>sp\|Q5FVR7\|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1	Back alignment and function description

>sp\|O19137\|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus GN=CPSF4 PE=2 SV=1	Back alignment and function description

>sp\|Q6DJP7\|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1	Back alignment and function description

>sp\|Q66KE3\|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2132
302141758		2149	unnamed protein product [Vitis vinifera]	0.903	0.896	0.431	0.0
224066791		2120	predicted protein [Populus trichocarpa]	0.916	0.921	0.438	0.0
255558556		2030	protein with unknown function [Ricinus c	0.828	0.869	0.444	0.0
356551213		2033	PREDICTED: uncharacterized protein LOC10	0.560	0.587	0.426	0.0
356554654		2002	PREDICTED: uncharacterized protein LOC10	0.566	0.603	0.422	0.0
225459673		2260	PREDICTED: uncharacterized protein LOC10	0.698	0.659	0.369	0.0
449444220		2118	PREDICTED: uncharacterized protein LOC10	0.504	0.508	0.400	0.0
449492653		1341	PREDICTED: uncharacterized protein LOC10	0.504	0.802	0.397	0.0
334182742		2166	zinc finger CCCH domain-containing prote	0.344	0.339	0.494	0.0
224082348		495	predicted protein [Populus trichocarpa]	0.229	0.987	0.678	0.0

>gi\|302141758\|emb\|CBI18961.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1361 bits (3523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/2118 (43%), Positives = 1214/2118 (57%), Gaps = 191/2118 (9%)

Query: 80   HRISINDDRLQQHQQTDRRHHHHRQHPVADFEARQDVWDRHPR----IQPDHRPVVSRLD 135
            HR+S N   L   +   R HH     P     +R    +R PR    I+ DH    +R  
Sbjct: 144  HRVS-NRTLLDDDRHRLRVHHFDNSRPEFWDPSRVSTENRPPRLYHVIRSDHETSHNR-- 200

Query: 136  RHHEFDHRPLSPYRSMDKIKHELDTTSYRFRERYSNDVVQFEHT---------GSNNSNQ 186
                F+H P+SP+R++ + +H+ + +S RFR+  +     FEH          G   S+ 
Sbjct: 201  ---SFNHNPVSPFRAIGEFRHDPEGSS-RFRDELNGG---FEHKRVEELVWGRGEGRSHD 253

Query: 187  RVDFVSHRSQ---------------FVSTSDRLNSSNYDNQHGSQFDSNEL-------MS 224
              D  SH  Q               FV   D  +  NYD+++GS  D   +       +S
Sbjct: 254  DFDRHSHLVQNANKSLRNIGFGDSHFVVEPDSSSLGNYDSRYGSSRDEEFIRNGRGDGVS 313

Query: 225  NNVRDVGLNRPVFKERESRDSLLGRGSNSENSGDGVRAFSGKREFYASDAGRYGNNRGSR 284
             N R     +P   +R++ + L+G  +N  + G GV+ FS KR   A + G++  NRGSR
Sbjct: 314  ENQRWAHSRQP---QRDAANYLIGLENNEIDDGGGVQVFSFKRGPNALELGKF-TNRGSR 369

Query: 285  EHSYEYNRTPRKQVQKKSALLRIQ--KPYYRNRDDGELHHSNYEIKSGSFRGKDQVVFSD 342
            E S+E+ R+PRK++QKKSALLRIQ  KP  R RDDG+ ++   E  S  +RGK+ + + D
Sbjct: 370  EGSHEFTRSPRKKIQKKSALLRIQLQKPSPRKRDDGQFYYD--ESTSSQYRGKEPLEYLD 427

Query: 343  RDVGEHEQREGSPVELDVSFKSNSLVAKAIVATSSSAIVSDANL--TPKKGNTRKIVMSN 400
               G  ++RE SPVELDVSFKSNSLVAKAI+A SS  +VSD NL   P+    RKI + N
Sbjct: 428  H--GMADKRERSPVELDVSFKSNSLVAKAIMAPSSPTVVSDRNLCLIPRNRELRKITLPN 485

Query: 401  KDHSSLQMNKPLDSSRKLGGSRDAVNNALVSED---KDSKQAEKKVAPSCANKCDT-NSN 456
             D+SS Q+NK  +   K    RD + + +       KD KQ ++KV  S      T +S 
Sbjct: 486  MDNSSSQLNKLNEEPVK----RDCLPSVVADPSLCHKDPKQLKEKVTASGLETVQTFSSK 541

Query: 457  PCSSGSNTSPAKITVE-KLKSIVPEKC----GTTKTSALKVAKKKKVAKRVVKKAINPTV 511
            PCSSG+N S     VE  L S+V EK     G+   S+ KV KKKKV    ++K   P  
Sbjct: 542  PCSSGTNISLENNRVEGSLNSMVSEKVAASIGSGGMSSPKVTKKKKV----IRKVSIPIS 597

Query: 512  HVSGSQPTEKLDELLKADASTLGAPAASVLKMGVKPSKDKISSAAMASGHLDDLQAYTYE 571
              S SQ T+K  E   A  S+   P+A+         K+KI+SA + S  +  +   T  
Sbjct: 598  RASNSQLTKKPGE---APGSSTLRPSAASSSNNAAHPKEKITSAGLIS--VTGVNEVTAL 652

Query: 572  ANMSPGTEQVGGSPETAMVSKEVSTDGDSCAPCVTKIKRKRSGSISRLACSSHKETKIDE 631
            +  +   E +      + +S++  TD  S   CV ++  KR+        SS KET   E
Sbjct: 653  SKNNKVNESL-----LSNISEKSVTDTVSGQACVAELTEKRNRLSPPSGFSSQKETNFHE 707

Query: 632  GSVNADGCLHVLNTASNFDKDLTKLLNETNFSDIGGLEGADKHFCHNGHSLLHENSETKE 691
            G +N +G +H LN  SN +K LT+  NET + DI G+       C NG S+  EN   K 
Sbjct: 708  GPINTEGSIHDLNVISNSEKGLTRSPNETTYIDIDGISDVSMQICQNGPSVSLENDVLKG 767

Query: 692  YSEPLLREGRNINSDLKSLEEIRRHEVHVNTCSSAHGMNTTTSCNIGLLSSQEKMTDSEV 751
             SE +L  G N+N  L SLEE + HE   NT +S H +N  +S +  L+ +QEK++ S++
Sbjct: 768  SSETMLSVGGNVNVCLSSLEETKIHEGLANTNNSVHDLNIGSSSDCDLIKTQEKISTSDI 827

Query: 752  GILNASSKQPCKGQMSSSVNSSTVEGCPSVMLPGRCEISAFSSSEETDFHNASTHVDHSN 811
            G + A S+ PC   +S       +E      L G   +    S +E   H    +VD S+
Sbjct: 828  GTVGAVSRHPCSNHVSV-----LLENPRPFSLGGNASVPVLCS-KENKTHEGPLNVDGSS 881

Query: 812  GDKGSCSGSDRVIINSE----EINPGTGDYNGRQLATNEVTIAIEGGHAGGLANTMFSVG 867
               G+   SD  +  S+      N G  D  G+QL+ + V +++E G     A  M S+G
Sbjct: 882  NRTGTALTSDHGLTKSQVKITASNTGIVDDAGKQLSQDGVIMSVENGAIERPAKDMASMG 941

Query: 868  SREFGMSNNTD-------KCKVMTSVSDFPDAMVSDMDTGPVKAFSSVQSLNTALSVKDS 920
                 + +  D       K K+ TS SD   +  + +   P+   +S   ++  LS    
Sbjct: 942  G-NLNVDSGKDYTPKGKKKRKIRTSQSDL--SHSAKVHVKPLNVITSRHDVDATLSCSMK 998

Query: 921  FPVEVRVTEG-LDVGLQSSSDGLSVFRGHNSTGGCSEANVS---ESSGLNGSSPENRKRR 976
             P       G L VG ++  D +SV  G++S    SEA VS      G NG+SP+ +KRR
Sbjct: 999  DPSLANSYVGSLKVGSEACEDRVSVLHGNSSMKDLSEAKVSFRDVDVGQNGTSPKLKKRR 1058

Query: 977  KVSANHPGFTSEIVPQISEGPVTPDLSTSGVELPSNSTEGQMHPEEGVAVSNMDTLCDSS 1036
            K     PGF+S + P+I +  + PD ST G E+PSNS +     EE V VS + T+  + 
Sbjct: 1059 KGFVPDPGFSSPMGPEIHKESLIPDASTIGPEVPSNSNDCLTQSEEQVPVSGI-TMSATG 1117

Query: 1037 LPPCPDGITVLLDSGSAQISSEVAVSVHTNASGFGDDSLKVEPCIVEPSLAFGESDNANV 1096
            L PC +G TVL ++ + + + E   SV       GDDS   +   ++PS+   E    ++
Sbjct: 1118 LQPCLEGNTVLPENRTTRGNFEAMSSV-------GDDSSANDMKFLQPSVIVEELAIPSL 1170

Query: 1097 RTTCPPGSEGKQIVNEDPVVDGTNYNNEDMCTEKSKMENIEAFVVEEQVKACNVTTEF-V 1155
            +++CP G   + I  E P +   ++ NE M  E    E I    +EE       T +   
Sbjct: 1171 QSSCPSGLRVELI--ETPGMSSVDHQNEIMGLESGIRERISVHGLEEPGMLRRGTADCKS 1228

Query: 1156 TPEHQSSDLNKILPATDVESDCCLLERGDLSRA---YRALVADGDGVSTTNSYDEMMEF- 1211
            T   ++ DLN+   +T +E D   L + D       Y ++ ADG+GVS TNS DE+M+  
Sbjct: 1229 TAALETLDLNRRQLSTGMECDTHTLMKDDKQPTVSNYLSIAADGNGVSPTNSNDELMQSL 1288

Query: 1212 -DSISELGSPEILSTVPVMNALNHEASASQISNEKVCRIEKIPSEEPVDEGFFNLSAHTS 1270
             D++S + SPE L  +P ++ L+ E S  QIS++K C  ++   E+P+ +    L AH S
Sbjct: 1289 PDTLSNMASPETLPLIPGLHTLDTELSVEQISDQKGCGDDRKSDEKPMVDCGSVLFAHNS 1348

Query: 1271 PSEHAKINLKLDDMLESAHLVAQRTVSLPAQDVKDTGLTLNPMSGETNGKKHQASHCVSR 1330
             S+ ++ N KLDD + S + +  +TV   +QD K T  ++N +SGE NG K+  ++ V R
Sbjct: 1349 CSQSSESNFKLDDAIGSDNSINGKTVQPSSQDTKRTTHSVNLISGELNGSKNHLNNLVPR 1408

Query: 1331 IHPRRSSSVFTASRDLASSTRTTCTTRPRTWHRTESSSASPAPGNKSLLPPQNQLPKKVA 1390
            + P  SS     S+  ASST      +PRTW+RT +SS+S         PPQ QL KK+ 
Sbjct: 1409 VFPAPSSFFLANSKKTASSTHIA---KPRTWYRTGASSSSLKKPLSIAFPPQRQL-KKIG 1464

Query: 1391 KYQSMSYIRKGNSLVRKPAPVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVD 1450
            K Q  SYIRKGNSLVRKPAPVA + Q SHGL+SSVY LN SG+ E +K  GSE   DV+D
Sbjct: 1465 KVQGTSYIRKGNSLVRKPAPVAVIPQGSHGLSSSVYRLNPSGVDEMRKRTGSESRTDVID 1524

Query: 1451 PP--SFLRGVNAPLERPRTPPLPVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQ 1508
            P   S     +AP ERP+TPPLP   K+P   T S+   +S   A+   +G +E      
Sbjct: 1525 PSNRSSTGATDAPSERPQTPPLPYSTKLPKCTTISSVPMSSEDGAKS--SGSTE------ 1576

Query: 1509 KLMEINDELNFSNAALNISKTPVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQ 1568
                                   NQTG +N LESQ  LNDG   +S +KR+TY+KRKSNQ
Sbjct: 1577 -----------------------NQTGLINNLESQSVLNDGNSESSKLKRVTYVKRKSNQ 1613

Query: 1569 LIAASNGCSLSVQNPDKTQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSFTSEGEK 1628
            L+AASN   +SVQN DKT + +SD                          DGS  SEG++
Sbjct: 1614 LVAASNPHDMSVQNADKTPALSSDD-------------------------DGS-NSEGQR 1647

Query: 1629 CAKDIFRRSDMSQ-SYKAVKKICKPIRFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWK 1687
              K +  +S   + S K + K  +P +FSLVWTL   QSS+ D + ++   VLPSLFPWK
Sbjct: 1648 PPKLVSSKSSSKRPSDKVLSKTREPSKFSLVWTLRGAQSSEKDGNSVHSQGVLPSLFPWK 1707

Query: 1688 RTLYWRRFVQDPVSISNNSSLSAISRKLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSL 1747
            R  YWR F+ +P SI N++SLS ISRKLLLLRKRDTVYTRS  GFSLRK KVL VGGSSL
Sbjct: 1708 RATYWRSFMHNPASIPNSTSLSMISRKLLLLRKRDTVYTRSTGGFSLRKSKVLGVGGSSL 1767

Query: 1748 KWSKSIENRSKKVNEEATLAVAAVE-KKRQENGAESFASETKIRIRSCRERIFRIGSVRY 1806
            KWSKSIE +SKK NEEATLAVAAVE KKR++NGA S  SET+ R  S RERIFR+GSVRY
Sbjct: 1768 KWSKSIERQSKKANEEATLAVAAVERKKREQNGAASVISETESRNHSSRERIFRVGSVRY 1827

Query: 1807 KMDSSRRTLQRISDDSSPCAAGPTLEKNAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKR 1866
            KMDSSRRTLQRISD  S C+A    EKNAKK YIPRRL+IGNDEYV+IGNGNQLIR+PK+
Sbjct: 1828 KMDSSRRTLQRISDGDSTCSAALQSEKNAKKPYIPRRLLIGNDEYVQIGNGNQLIRNPKK 1887

Query: 1867 RARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFL 1926
            R R+LASEKVRWSLHTARLRLA+K KYCQFFTRFGKCNKD+GKCPYIHDPSKIAVCTKFL
Sbjct: 1888 RTRILASEKVRWSLHTARLRLAKKWKYCQFFTRFGKCNKDDGKCPYIHDPSKIAVCTKFL 1947

Query: 1927 KGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCAD 1986
             GLCSN +CKLTHKVIPERMPDCSYFLQGLC N++CPYRHV+VNPNAS CEGFL+GYCAD
Sbjct: 1948 NGLCSNPNCKLTHKVIPERMPDCSYFLQGLCNNESCPYRHVNVNPNASVCEGFLRGYCAD 2007

Query: 1987 GDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRKPKNTHGRYFGSMLV 2046
            G+ECRKKHSYVCP F+ATGSC LG+KC+LHHPK+RS GKK ++SR+  N  GRYFG   V
Sbjct: 2008 GNECRKKHSYVCPIFEATGSCPLGSKCKLHHPKNRSKGKKKKQSRE-LNAQGRYFGFRHV 2066

Query: 2047 EDSESQTAMSERPTVQNNGNL-FVEGKLVDYIGLDVSDKEAGETNDALHELLDFNDSGAS 2105
             + + +  +SE+ T +NN ++ F EG+  DYI LDVSD++ G  N    +      S  S
Sbjct: 2067 NNRDPEKVVSEKDTAKNNDDISFQEGRFADYISLDVSDEDIGSINGPRTQQTTLFGSEPS 2126

Query: 2106 ELQLDDLDELIKPIRIMN 2123
             L LDDLDELIKP+ IMN
Sbjct: 2127 YLHLDDLDELIKPVLIMN 2144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224066791\|ref\|XP_002302217.1\| predicted protein [Populus trichocarpa] gi\|222843943\|gb\|EEE81490.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255558556\|ref\|XP_002520303.1\| protein with unknown function [Ricinus communis] gi\|223540522\|gb\|EEF42089.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

>gi\|356551213\|ref\|XP_003543972.1\| PREDICTED: uncharacterized protein LOC100788859 [Glycine max]	Back alignment and taxonomy information

>gi\|356554654\|ref\|XP_003545659.1\| PREDICTED: uncharacterized protein LOC100802468 [Glycine max]	Back alignment and taxonomy information

>gi\|225459673\|ref\|XP_002284626.1\| PREDICTED: uncharacterized protein LOC100262507 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449444220\|ref\|XP_004139873.1\| PREDICTED: uncharacterized protein LOC101206853 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449492653\|ref\|XP_004159062.1\| PREDICTED: uncharacterized protein LOC101224393 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|334182742\|ref\|NP_173577.2\| zinc finger CCCH domain-containing protein [Arabidopsis thaliana] gi\|332191999\|gb\|AEE30120.1\| zinc finger CCCH domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224082348\|ref\|XP_002306656.1\| predicted protein [Populus trichocarpa] gi\|222856105\|gb\|EEE93652.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2132
ZFIN\|ZDB-GENE-030131-9399		929	zc3h3 "zinc finger CCCH-type c	0.101	0.232	0.420	3.6e-43
UNIPROTKB\|F1NHU3		377	ZC3H3 "Uncharacterized protein	0.070	0.397	0.506	3.4e-42
UNIPROTKB\|I3LVF0		438	I3LVF0 "Uncharacterized protei	0.075	0.369	0.471	1.6e-39
UNIPROTKB\|Q8IXZ2		948	ZC3H3 "Zinc finger CCCH domain	0.090	0.204	0.415	1.6e-37
UNIPROTKB\|F1PNB5		838	ZC3H3 "Uncharacterized protein	0.075	0.193	0.485	2.8e-37
MGI\|MGI:2663721		950	Zc3h3 "zinc finger CCCH type c	0.087	0.196	0.435	3.3e-36
UNIPROTKB\|F1MXR8		944	ZC3H3 "Uncharacterized protein	0.086	0.194	0.437	4e-34
RGD\|1307276		952	Zc3h3 "zinc finger CCCH type c	0.072	0.161	0.478	5.2e-34
DICTYBASE\|DDB_G0279181		611	DDB_G0279181 [Dictyostelium di	0.087	0.304	0.355	1.1e-26
FB\|FBgn0035900		597	ZC3H3 "ZC3H3" [Drosophila mela	0.113	0.407	0.320	9.4e-26

ZFIN\|ZDB-GENE-030131-9399 zc3h3 "zinc finger CCCH-type containing 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 486 (176.1 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
 Identities = 95/226 (42%), Positives = 125/226 (55%)

Query:  1871 LASEKVRWSLHTARLRLARKRK---YCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLK 1927
             +AS  V+ SL   R    +K+K   YC ++ RFGKCN  N  CPYIHDP K+AVCT+FL+
Sbjct:   673 VASRAVQRSLAIIRHAKQKKQKAKQYCMYYNRFGKCNHGN-TCPYIHDPDKVAVCTRFLR 731

Query:  1928 GLCSNSD--CKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCA 1985
             G C  +D  C  +HKV  E+MP CSYFL+G+C N +CPY HV+V+  A  CE F++GYC 
Sbjct:   732 GTCKKTDGTCPFSHKVAKEKMPVCSYFLKGICNNSSCPYSHVYVSRKAEVCEDFVRGYCP 791

Query:  1986 DGDECRKKHSYVCPTFKATGSCALGAKCRLHHPXXXXXXXXXXXXXXPKNTHGRYFGSML 2045
              GD+C+KKH+ VCP F +TG C  G+KC+LHH                K    R    +L
Sbjct:   792 QGDKCKKKHTLVCPDFSSTGVCPRGSKCKLHHRQSKKRTGSNASYGAAKKACTR---DVL 848

Query:  2046 VEDSESQTAMSERPTVQNNGNLFVEGKLVDYIGLDVSDKEAGETND 2091
                  +QT  SE        +     KL  +I L  S  +  E  D
Sbjct:   849 RSSDAAQTQSSESTLADEGSSCSRPEKLPSFISLS-SSPDGSENPD 893

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB\|F1NHU3 ZC3H3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LVF0 I3LVF0 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IXZ2 ZC3H3 "Zinc finger CCCH domain-containing protein 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PNB5 ZC3H3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2663721 Zc3h3 "zinc finger CCCH type containing 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MXR8 ZC3H3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1307276 Zc3h3 "zinc finger CCCH type containing 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0279181 DDB_G0279181 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0035900 ZC3H3 "ZC3H3" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_II000715	hypothetical protein (2120 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2132
KOG1492		377	consensus C3H1-type Zn-finger protein [General fun	99.87
KOG1040		325	consensus Polyadenylation factor I complex, subuni	99.5
COG5084		285	YTH1 Cleavage and polyadenylation specificity fact	99.22
KOG1040		325	consensus Polyadenylation factor I complex, subuni	99.16
KOG1492		377	consensus C3H1-type Zn-finger protein [General fun	99.06
KOG2494		331	consensus C3H1-type Zn-finger protein [Transcripti	98.89
KOG4791		667	consensus Uncharacterized conserved protein [Funct	98.62
COG5084		285	YTH1 Cleavage and polyadenylation specificity fact	98.43
KOG1677		332	consensus CCCH-type Zn-finger protein [General fun	98.37
KOG1595		528	consensus CCCH-type Zn-finger protein [General fun	98.31
KOG2494		331	consensus C3H1-type Zn-finger protein [Transcripti	98.18
KOG1677		332	consensus CCCH-type Zn-finger protein [General fun	97.81
COG5063		351	CTH1 CCCH-type Zn-finger protein [General function	97.63
KOG4791		667	consensus Uncharacterized conserved protein [Funct	97.55
KOG3702		681	consensus Nuclear polyadenylated RNA binding prote	96.94
KOG1763		343	consensus Uncharacterized conserved protein, conta	96.85
PF00642		27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	96.66
COG5063		351	CTH1 CCCH-type Zn-finger protein [General function	96.61
KOG1595		528	consensus CCCH-type Zn-finger protein [General fun	96.59
PF00642		27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	95.9
smart00356		27	ZnF_C3H1 zinc finger.	95.42
KOG1763		343	consensus Uncharacterized conserved protein, conta	95.3
KOG3702		681	consensus Nuclear polyadenylated RNA binding prote	95.2
KOG2333		614	consensus Uncharacterized conserved protein [Gener	95.07
smart00356		27	ZnF_C3H1 zinc finger.	94.92
COG5252		299	Uncharacterized conserved protein, contains CCCH-t	94.7
KOG2185		486	consensus Predicted RNA-processing protein, contai	89.99
COG5152		259	Uncharacterized conserved protein, contains RING a	88.09
KOG2185		486	consensus Predicted RNA-processing protein, contai	87.76
KOG2333		614	consensus Uncharacterized conserved protein [Gener	87.37
PF10650		23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	82.64
COG5252		299	Uncharacterized conserved protein, contains CCCH-t	81.71
PF14608		19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	80.67

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]	Back alignment and domain information

Probab=99.87  E-value=9.6e-23  Score=221.50  Aligned_cols=219  Identities=32%  Similarity=0.693  Sum_probs=166.9

Q ss_pred             hhcccchHHHHHHHHHH-HHhhhcCCcccccccccccccceeEEEEEccEEEEEcCCCCeeEecCCCCCCCCCCCccccc
Q 039602         1756 RSKKVNEEATLAVAAVE-KKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKN 1834 (2132)
Q Consensus      1756 ~s~k~~e~atla~a~~e-kkr~~~~a~~~~~~t~~R~~s~r~R~v~I~GVrF~vd~sG~KLvRvsd~~s~~sa~~~s~~~ 1834 (2132)
                      +.+|+|-|.-.|-.|.| |--++.|.++       |-+.+-.+.|.|+|..|..-.+..|....-               
T Consensus       115 qarkanlesyraklekeyktlaenkiqq-------rlsdgtkqlvtidglqyitgvsdtkwlefv---------------  172 (377)
T KOG1492|consen  115 QARKANLESYRAKLEKEYKTLAENKIQQ-------RLSDGTKQLVTIDGLQYITGVSDTKWLEFV---------------  172 (377)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHH-------HhccCceeEEEecceeeecccccchhhhhh---------------
Confidence            45567777777777777 6666666552       333456778999999997544333221111               


Q ss_pred             ccccCCCceeeeCCeeEEEecCCcccccChhhhhHHhhcccchhhhhhhhhccccCccccccccccccccCCCCCCCCCC
Q 039602         1835 AKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIH 1914 (2132)
Q Consensus      1835 a~~~~tPkRv~IgGvtYvRsKnGNlLvR~pkrR~r~vas~kvrwSl~t~R~rl~KKtq~CkfFlRTGkCkKgG~~CpFiH 1914 (2132)
                      +....-|+-+.-++..|       +| .    ..|.+..           -.-.+...+|+||..-|.|-+ |..|+|.|
T Consensus       173 sakgqcpkylywnnksy-------ll-k----kkrflke-----------vgnspsavycryynangicgk-gaacrfvh  228 (377)
T KOG1492|consen  173 SAKGQCPKYLYWNNKSY-------LL-K----KKRFLKE-----------VGNSPSAVYCRYYNANGICGK-GAACRFVH  228 (377)
T ss_pred             hhcCCCCceeEEcChhH-------HH-H----HHHHHHH-----------hCCCCceeEEEEecCCCcccC-Cceeeeec
Confidence            11112344444443333       22 0    1111111           012356789999999999999 89999999


Q ss_pred             CCCccccccccccCccCCC-CcccccccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCccCcccc-ccCCCCCCcccC
Q 039602         1915 DPSKIAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFL-KGYCADGDECRK 1992 (2132)
Q Consensus      1915 DPsKvAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLnG~CsNdnCPYsHVK~spKapVCrdFl-qGyCpKGdkCpF 1992 (2132)
                      .|.+..+|+.||+|.|.+. +|.++|+..+.+.|.|+||+-|.|.+++|+|.|+.-...+|+|-.|. .|+|..|..|+.
T Consensus       229 eptrkticpkflngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelgtsckn  308 (377)
T KOG1492|consen  229 EPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKN  308 (377)
T ss_pred             cccccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceecccccccc
Confidence            9999999999999999986 99999999999999999999999999999999999989999999996 699999999999


Q ss_pred             CCCccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602         1993 KHSYVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus      1993 RHv~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
                      .|...|.+|+..|.|.+ +.|.+.|+--.
T Consensus       309 qhilqctdyamfgscnn-pqcslyhgavs  336 (377)
T KOG1492|consen  309 QHILQCTDYAMFGSCNN-PQCSLYHGAVS  336 (377)
T ss_pred             ceeeeecchhhhcCCCC-Ccceeecceec
Confidence            99999999999999997 89999997543

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]	Back alignment and domain information

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]	Back alignment and domain information

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]	Back alignment and domain information

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]	Back alignment and domain information

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]	Back alignment and domain information

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]	Back alignment and domain information

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00356 ZnF_C3H1 zinc finger	Back alignment and domain information

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]	Back alignment and domain information

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]	Back alignment and domain information

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>smart00356 ZnF_C3H1 zinc finger	Back alignment and domain information

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]	Back alignment and domain information

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger	Back alignment and domain information

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		2132
2d9n_A		77	Solution Structure Of Ccch Type Zinc-Finger Domain		1e-04
2rhk_C		72	Crystal Structure Of Influenza A Ns1a Protein In Co		3e-04

>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In Cleavage And Polyadenylation Specificity Factor Length = 77

Back alignment and structure

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 1918 KIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHV 1967
            K  VC  +L+GLC   D C+  H+    +MP+C ++ + G C+NK CP+ H+
Sbjct: 9    KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 60

PyMOL of 2d9n

>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex With F2f3 Fragment Of Human Cellular Factor Cpsf30, Northeast Structural Genomics Targets Or8c And Hr6309a Length = 72

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2132
2rhk_C		72	Cleavage and polyadenylation specificity factor su	1e-17
2rhk_C		72	Cleavage and polyadenylation specificity factor su	1e-07
2rhk_C		72	Cleavage and polyadenylation specificity factor su	8e-06
2d9n_A		77	Cleavage and polyadenylation specificity factor, 3	1e-17
2d9n_A		77	Cleavage and polyadenylation specificity factor, 3	3e-08
2d9n_A		77	Cleavage and polyadenylation specificity factor, 3	7e-04
2lhn_A		80	Nuclear polyadenylated RNA-binding protein NAB2; n	8e-13
3u9g_A		229	Zinc finger CCCH-type antiviral protein 1; zinc fi	3e-12
3u9g_A		229	Zinc finger CCCH-type antiviral protein 1; zinc fi	8e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2e5s_A		98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	2e-07
3d2q_A		70	Muscleblind-like protein 1; tandem zinc finger dom	3e-07
3d2q_A		70	Muscleblind-like protein 1; tandem zinc finger dom	9e-06
2cqe_A		98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-07
2cqe_A		98	KIAA1064 protein; CCCH zinc-finger, structural gen	2e-06
2cqe_A		98	KIAA1064 protein; CCCH zinc-finger, structural gen	5e-06
2rpp_A		89	Muscleblind-like protein 2; zinc finger domain, C3	7e-07
2rpp_A		89	Muscleblind-like protein 2; zinc finger domain, C3	9e-06
3d2n_A		83	Muscleblind-like protein 1; tandem zinc finger dom	1e-05
3d2n_A		83	Muscleblind-like protein 1; tandem zinc finger dom	2e-05
1m9o_A		77	Tristetraproline; Cys3His type zinc finger, metal	1e-04

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72	Back alignment and structure

 Score = 78.0 bits (192), Expect = 1e-17
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1914 HDPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHV 1967
                K  VC  +L+GLC   D C+  H+    +M +C ++ + G C+NK CP+ H+
Sbjct: 11   MSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKECPFLHI 66

PyMOL of 2rhk

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72	Back alignment and structure

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72	Back alignment and structure

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77	Back alignment and structure

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77	Back alignment and structure

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77	Back alignment and structure

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80	Back alignment and structure

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Length = 229	Back alignment and structure

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Length = 229	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98	Back alignment and structure

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70	Back alignment and structure

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70	Back alignment and structure

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98	Back alignment and structure

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98	Back alignment and structure

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98	Back alignment and structure

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89	Back alignment and structure

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89	Back alignment and structure

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83	Back alignment and structure

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83	Back alignment and structure

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2132
2d9n_A		77	Cleavage and polyadenylation specificity factor, 3	99.28
2d9n_A		77	Cleavage and polyadenylation specificity factor, 3	99.15
2rhk_C		72	Cleavage and polyadenylation specificity factor su	98.92
2e5s_A		98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.84
3d2q_A		70	Muscleblind-like protein 1; tandem zinc finger dom	98.73
3d2q_A		70	Muscleblind-like protein 1; tandem zinc finger dom	98.71
2rhk_C		72	Cleavage and polyadenylation specificity factor su	98.71
2rpp_A		89	Muscleblind-like protein 2; zinc finger domain, C3	98.71
2e5s_A		98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.67
3d2n_A		83	Muscleblind-like protein 1; tandem zinc finger dom	98.64
2cqe_A		98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.63
2cqe_A		98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.62
3d2n_A		83	Muscleblind-like protein 1; tandem zinc finger dom	98.6
2rpp_A		89	Muscleblind-like protein 2; zinc finger domain, C3	98.56
1m9o_A		77	Tristetraproline; Cys3His type zinc finger, metal	98.5
1m9o_A		77	Tristetraproline; Cys3His type zinc finger, metal	98.44
3u9g_A		229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.47
3u9g_A		229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.33
2lhn_A		80	Nuclear polyadenylated RNA-binding protein NAB2; n	96.38
2lhn_A		80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.84
2d9m_A		69	Zinc finger CCCH-type domain containing protein 7A	94.23
2fc6_A		50	Nuclear, target of EGR1, member 1; structure genom	94.19
2d9m_A		69	Zinc finger CCCH-type domain containing protein 7A	89.04
2fc6_A		50	Nuclear, target of EGR1, member 1; structure genom	87.5
3u1l_A		240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	81.6
3u1l_A		240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	80.18

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

Probab=99.28  E-value=1.3e-12  Score=122.40  Aligned_cols=64  Identities=30%  Similarity=0.806  Sum_probs=34.4

Q ss_pred             cccccccccCccCCC-CcccccccCCCCCCCCccccc-CCCCCCCCCCCCCCCCCCCccCcccccc
Q 039602         1919 IAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKG 1982 (2132)
Q Consensus      1919 vAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLn-G~CsNdnCPYsHVK~spKapVCrdFlqG 1982 (2132)
                      ..+|++|++|.|.+| .|+|+|+....++++|+||++ |.|.++.|+|.|+.+..++++|++|++|
T Consensus        10 ~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~C~~f~~g   75 (77)
T 2d9n_A           10 TVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWSGPS   75 (77)
T ss_dssp             TSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSSSSCCTTT
T ss_pred             ceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccCCCCeeccCCCccccCCCCcccccC
Confidence            344444444555444 455555544445555655555 5665556666665555555555555544

PyMOL of 2d9n

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}	Back alignment and structure

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A	Back alignment and structure

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A	Back alignment and structure

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}	Back alignment and structure

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}	Back alignment and structure

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}	Back alignment and structure

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1	Back alignment and structure

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1	Back alignment and structure

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}	Back alignment and structure

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}	Back alignment and structure

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A	Back alignment and structure

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A	Back alignment and structure

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1	Back alignment and structure

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1	Back alignment and structure

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A	Back alignment and structure

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		2132
d1m9oa_		40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	96.69
d2cqea2		29	Zinc finger CCCH domain-containing protein C19orf7	96.32
d1rgoa1		36	Butyrate response factor 2 (Tis11D) {Human (Homo s	96.3
d2cqea2		29	Zinc finger CCCH domain-containing protein C19orf7	96.09
d1rgoa2		34	Butyrate response factor 2 (Tis11D) {Human (Homo s	96.05
d1m9oa_		40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	95.79
d1rgoa2		34	Butyrate response factor 2 (Tis11D) {Human (Homo s	95.38
d1rgoa1		36	Butyrate response factor 2 (Tis11D) {Human (Homo s	95.0
d2cqea1		56	Zinc finger CCCH domain-containing protein C19orf7	91.16
d2cqea1		56	Zinc finger CCCH domain-containing protein C19orf7	86.14
d2fc6a1		37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	85.45

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00028  Score=58.29  Aligned_cols=29  Identities=31%  Similarity=0.752  Sum_probs=25.4

Q ss_pred             CccccCCCCcCcCCCCCCCCCCCCCCCCC
Q 039602         1995 SYVCPTFKATGSCALGAKCRLHHPKSRSN 2023 (2132)
Q Consensus      1995 v~eCPDFa~TGsCprGdkCKFaHperesr 2023 (2132)
                      ..+|++|...|.|++|+.|.|+|++.+.+
T Consensus         9 T~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           9 TELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             cccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            36799998899999999999999998864

PyMOL of d1m9oa_

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure