Citrus Sinensis ID: 039619

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MEKTVRFGLVCGVGGGGGASSSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGRTTAFADEPSEQDDSGLRAPLVVTGLSLSNRIKLYYYCDPYELGKWASLSGV
Secondary Structure (PSIPRED)
ccccEEEccEEEEcccccccccccccHHHcccccccEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEcccccccEEccccccccccccccccEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEEcccHHHHHcccccccccccccccccEEEEccEEEEcccccccccccccEEEcccccccccccccHHHcccEEEccccccccccccccccccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEccccccccccccccHHHHHHHHcccccccHHccHcHcccccHHHHHHHEHEHHcccccccccEcccccccccccccccccEEEEcccccccccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEcccccHHccccHccccccccEEEEcccccHHccccHccccccccEEEEcccccHcccccccccccHcEEEEcccHHHHcHHHHccccHcccccccEEEEEcccccccccccHHHccccccccccEEEEEcccccccccccccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHccccccccccccccccEEEEcccEccccccHHHcccccccEccHHHHHHccHHHHHHcccccccccccccccccHccccccccccccHccEEEEEEEcccccccccHHcccc
Coil and Loop (DISEMBL)
MEKTVRFGLVcgvgggggasssrfpkrqrssqqdldeseyseeveeeefptvQRQARSQEtraadkgggskgnktadpgkrsnngpvsvtlkdpevldcpvcyepltipvyqlqiipcpsltslwskselpatlENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESiaeglddntsleTMEIFICQNLKALPNGLRNLTSLQYLLiqdcptigsftancfptnlasvcIDYEKIYKplilergpglhrftSVRLLTLfggeccgvvsfppekdtgkalpaslkhlsiwnfpnlerissienltsfeslqlcccpklqkfpdnglptsLLRLEIygcplieerfekdkgqywsliadipcvridchyvidpkaqrqliqtgdytiphssahffpYQLIKLIsgrttafadepseqddsglrapLVVTGLSLsnriklyyycdpyelgkwaslsgv
Flexible Loop (DISEMBL)
mektvrfglvcgvgggggasssrfpkrqrssqqdldeseyseeveeeefptvqrqarsqetraadkgggskgnktadpgkrsnngpvsvtlkdpeVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGRTTAFADepseqddsglraPLVVTGLSLSNRIKLYYYCDPyelgkwaslsgv
Low Complexity Region (SEG)
MEKTVRFglvcgvgggggASSSRFPKRQRSSQQDLDeseyseeveeeeFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGRTTAFADEPSEQDDSGLRAPLVVTGLSLSNRIKLYYYCDPYELGKWASLSGV
Disordered region (IsUnstruct)
******************************************************************************************LKDPEVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGRTTAF************RAPLVVTGLSLSNRIKLYYYCDPYELGKWA*****
Disordered Region (DISOPRED)
****VRF*LVCGVGGGGGASSSRFPKRQRSSQQDLDESEYSEEVEEEEFPT*QRQARSQETRAADKGGG*******************VTLKDPEVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGR************************LSLSNRIKLYYYCDPYELGKWASL***
Disordered Region (DISEMBL)
MEKTVRFGLVCGVGGG*****************************************************************SNNGPVSVTLKDPEVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGRTTAF*********SGLRAPLVVTGLSLSNRIKLYYYCDPYELGKWASLSGV
Disordered Region (DISPRO)
*EKTVRFGLVCGVGG****SSSRFPK***********SEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGRTTAFADEPSEQDDSGLRAPLVVTGLSLSNRIKLYYYCDPYELGKWASLS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKTVRFGLVCGVGGGGGASSSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLIKLISGRTTAFADEPSEQDDSGLRAPLVVTGLSLSNRIKLYYYCDPYELGKWASLSGV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	459	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.540	0.174	0.316	1e-16
Q7XA39	988	Putative disease resistan	N/A	no	0.379	0.176	0.260	5e-06
Q84K34	349	E3 ubiquitin-protein liga	no	no	0.228	0.300	0.335	3e-05
Q7XBQ9	970	Disease resistance protei	N/A	no	0.187	0.088	0.390	0.0001
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.361	0.127	0.245	0.0008

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 142/313 (45%), Gaps = 65/313 (20%)

Query: 110  VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFL-SLRGNLSKA-LKHLYI-ISC 166
            +++L II C SL S +  S  P TL+ +Y+  C KL F  SL+   S + L++L+I  SC
Sbjct: 1118 LHELLIIACHSLES-FPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSC 1176

Query: 167  SNLE------------------------SIAEGL-DDNTSLETMEIFICQNL-------- 193
            SNL                         SI  GL DD  +LE++EI  C NL        
Sbjct: 1177 SNLVNFPLSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGL 1236

Query: 194  ----------------KALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYE 237
                            +ALP  L  LTSL  L I  CP I +     FP+NL ++CI   
Sbjct: 1237 PTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISLC 1296

Query: 238  KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPN 297
                P I     GL    ++R L + GG    + SFP E      LP S+  L I  F N
Sbjct: 1297 DKLTPRI---EWGLRDLENLRNLEIDGGN-EDIESFPEE----GLLPKSVFSLRISRFEN 1348

Query: 298  LERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQY 355
            L+ ++     +  + E++++  C KLQ   D  LP  L  L I  C L+ E F + + ++
Sbjct: 1349 LKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLP-PLSCLRISSCSLLTETFAEVETEF 1407

Query: 356  WSLIADIPCVRID 368
            + ++ +IP V ID
Sbjct: 1408 FKVL-NIPYVEID 1419

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 45/219 (20%)

Query: 181 SLETMEIFICQNLKAL--PNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEK 238
           SL+ + I+  ++LK L    G      L+ + I  CP         FPT  +   ++   
Sbjct: 786 SLKKLRIWFFRSLKGLMKEEGEEKFPMLEEMAILYCPLF------VFPTLSSVKKLEVHG 839

Query: 239 IYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNL 298
                 L     L   TS+R+     G      S P E  T      +L+ LS ++F NL
Sbjct: 840 NTNTRGLSSISNLSTLTSLRI-----GANYRATSLPEEMFTS---LTNLEFLSFFDFKNL 891

Query: 299 ERI-SSIENLTSFESLQLCCCPKLQKFPDNGLP--------------------------T 331
           + + +S+ +L + + LQ+  C  L+ FP+ GL                           T
Sbjct: 892 KDLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLT 951

Query: 332 SLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCH 370
           +L  L + GCP +E+R +K+ G+ W  IA IP   +D H
Sbjct: 952 ALTNLGVSGCPEVEKRCDKEIGEDWHKIAHIP--NLDIH 988

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q84K34|SIL10_ARATH E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 23/128 (17%)

Query: 5   VRFGLVCGVGGGGGASSSRFPKRQRSSQQDLDESEYSEEVE------EEEFPTVQRQARS 58
            RF  VCG   G G S++    R+R     +DE+E   E        EE+    Q Q   
Sbjct: 2   ARFS-VCGGDDGEGPSNNNHQSRKRQRLPSIDENEEDAETSDAGSSGEEDEDETQNQGMR 60

Query: 59  QETRAADKGGGSKGN------KTADPGKRSNNGPVS--------VTLKDPEVLDCPVCYE 104
            E+   D+G  S  +      +    GK  N+   S        VTL DP+VLDCP+C E
Sbjct: 61  PESE--DRGSTSDDSDREVVIEERRFGKFVNSQSSSSSKDSPLSVTLLDPDVLDCPICCE 118

Query: 105 PLTIPVYQ 112
           PL IP++Q
Sbjct: 119 PLKIPIFQ 126

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFIC 190
           A L+ + + RC+ L  L        ALK L I  C  LES+  EGL+  +SL  + +  C
Sbjct: 859 ANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHC 918

Query: 191 QNLKALPNGLRNLTSLQYLLIQDCPTI 217
             LK LP GL++LT+L  L I+ CP +
Sbjct: 919 NMLKCLPEGLQHLTTLTSLKIRGCPQL 945

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 45.8 bits (107), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 46/212 (21%)

Query: 157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPT 216
           +LK + +   +NL+ I + L    +LE +++  C++L  LP+ ++N T L YL + DC  
Sbjct: 614 SLKEMNLRYSNNLKEIPD-LSLAINLEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKK 672

Query: 217 IGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPE 276
           + S     FPT+L    ++Y      L L   P L  F ++++        C  V FP  
Sbjct: 673 LES-----FPTDLNLESLEY------LNLTGCPNLRNFPAIKM-------GCSDVDFPEG 714

Query: 277 KDT--------GKALPASLKH-------------------LSIWNFPNLERISSIENLTS 309
           ++          K LPA L +                   L++  + + +    I++L S
Sbjct: 715 RNEIVVEDCFWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGS 774

Query: 310 FESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341
            E + L     L + PD    T L  L +  C
Sbjct: 775 LEGMDLSESENLTEIPDLSKATKLESLILNNC 806

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
356554923	1399	PREDICTED: putative disease resistance R	0.542	0.177	0.355	3e-38
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.557	0.179	0.385	1e-37
400131587	1388	FB_MR5 [Malus x robusta]	0.610	0.201	0.379	2e-35
297742693	731	unnamed protein product [Vitis vinifera]	0.579	0.363	0.402	7e-33
224132254	552	predicted protein [Populus trichocarpa]	0.559	0.465	0.374	1e-32
45826061	739	resistance protein [Quercus suber]	0.531	0.330	0.374	7e-32
359495085	1345	PREDICTED: putative disease resistance p	0.498	0.170	0.383	2e-30
359487158	1245	PREDICTED: putative disease resistance p	0.546	0.201	0.391	3e-30
359480367	966	PREDICTED: putative disease resistance p	0.509	0.242	0.376	5e-29
225449872	1322	PREDICTED: putative disease resistance p	0.529	0.183	0.375	1e-28

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 158/307 (51%), Gaps = 58/307 (18%)

Query: 118  CPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLD 177
            CPSLT +    ELP +++++++  CS+L+ LS++G L K+++ L I SC  LESIA  L 
Sbjct: 1096 CPSLTCISRSGELPESVKHLFIWNCSELSCLSMKGQLPKSIERLEIQSCPKLESIANRLH 1155

Query: 178  DNTSLETMEIFICQNLK------------------------------------------- 194
             NTSLE+++I+ C+NLK                                           
Sbjct: 1156 RNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMS 1215

Query: 195  -----ALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGP 249
                 ALPN + NL SL+ L I  CP+I  F    FP NL S+ I+     + +      
Sbjct: 1216 CEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFPDNLTSLWINDHNACEAMF---NW 1272

Query: 250  GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISS--IENL 307
            GL++ + +R LT+ GG       F P +  G  LP++L  L++  FP+LE +SS     L
Sbjct: 1273 GLYKLSFLRDLTIIGGNL-----FMPLEKLGTMLPSTLTSLTVQGFPHLENLSSEGFHKL 1327

Query: 308  TSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRI 367
            TS   L +  CPKL   P+ GLP+SLL L I  CP ++E+  KDKG+ W  IAD+P V I
Sbjct: 1328 TSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKDKGRDWLKIADVPYVEI 1387

Query: 368  DCHYVID 374
            D  ++ D
Sbjct: 1388 DGKFIYD 1394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 155/311 (49%), Gaps = 55/311 (17%)

Query: 113  LQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI 172
            L I  CPSLT+L S  +LPATL ++ +  C KL  LS  G L  AL++L I S S L+ I
Sbjct: 1103 LDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSISKLQKI 1162

Query: 173  AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTA---------- 222
            AE L  NTSLE ++I+ C  LK+LP  L NL+ L+  LI  C +  SF A          
Sbjct: 1163 AERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLPSNLRVL 1222

Query: 223  ---NC----------------------------------FPTNLASVCIDYEKIYKPLIL 245
               NC                                   PTNL  + +   K YKP+  
Sbjct: 1223 GIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQEGLPTNLIELNMHDLKFYKPMF- 1281

Query: 246  ERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTG--KALPASLKHLSIWNFPNLERIS- 302
                GL + TS+  L++ G EC  V S+P E++ G    LP SL  L I  F NLE +S 
Sbjct: 1282 --EWGLQQPTSLIKLSIHG-ECLDVDSYPGERENGVMMLLPNSLSILCISYFQNLECLSP 1338

Query: 303  -SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIAD 361
               +NLTS   L++  C KL   P  GLP SL +LEI  CPL+ +    +KGQ WS IA 
Sbjct: 1339 KGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAH 1398

Query: 362  IPCVRIDCHYV 372
            IPCV ID  ++
Sbjct: 1399 IPCVLIDNKFI 1409

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 169/324 (52%), Gaps = 44/324 (13%)

Query: 90   TLKDPEVLDCP--VCYEPLTIP--VYQLQIIPCPSLTSLWSKSELPAT-------LENIY 138
            +LKD E+ +C   + +    IP  + ++QI  C SL SL     + +        LE + 
Sbjct: 1068 SLKDIEITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSHNCLEYLN 1127

Query: 139  VDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIA-EGL---DDNTSLETMEIFICQNLK 194
            ++RC  L  LSL   L +AL+ L I  C  LE +A +GL   + N  LE   I  CQNLK
Sbjct: 1128 IERCQSLTLLSLSDQLVRALRELDIYDCEQLEFLAPDGLFCNNTNYFLENFRIRRCQNLK 1187

Query: 195  ALPN---GLRNLTSLQYLLIQDCPTIGSFTANC--------------------FPTNLAS 231
            +LP    G+R  ++L+ + I DC  + +   +                     FP NL S
Sbjct: 1188 SLPRLSGGIRG-SNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYREGLTCSFPANLTS 1246

Query: 232  VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKAL-PASLKHL 290
            + I   K  K L  E   GLHR TS+R L + GGE   +VSFPP+    + L P SL  L
Sbjct: 1247 LMIWKVKSCKSL-WELEWGLHRLTSLRYLWI-GGEDPDMVSFPPDMVRMETLLPKSLTEL 1304

Query: 291  SIWNFPNLERISS--IENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERF 348
            SI  FPNL+++SS   + LTS ESL+L  CPKL   P  GLP SL  L IYGCP+++ER 
Sbjct: 1305 SIGGFPNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERC 1364

Query: 349  EKDKGQYWSLIADIPCVRIDCHYV 372
            +  KG+YW  I+ IP + ID   +
Sbjct: 1365 QPGKGRYWHKISHIPYIDIDWKMI 1388

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742693|emb|CBI35146.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 154/283 (54%), Gaps = 17/283 (6%)

Query: 97  LDCPVCYEPLTIPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSK 156
           L+ P     LT  + +L I  C SL+SL  +  LP  LE + ++ C  L    L      
Sbjct: 212 LELPAILLKLT-SLRKLVIKECQSLSSL-PEMGLPPMLETLEIENCDSLTSFPL--AFFT 267

Query: 157 ALKHLYIISCSNLES--IAEGLD--DNTSLETMEIFICQNL-KALPNGLRNL-TSLQYLL 210
            LK L+I +C NLES  I +GL   D TSL  ++I  C NL K+LP  +  L TSL  L 
Sbjct: 268 KLKTLHIWNCENLESFYIPDGLRNMDLTSLHKIKIDDCPNLLKSLPQRMHTLLTSLDKLW 327

Query: 211 IQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGV 270
           I DCP I SF     PTNL+S+ I     YK +   +  GL    S+R L + GG   G+
Sbjct: 328 ISDCPEIVSFPEGGLPTNLSSLHIG--SCYKLMESRKEWGLQTLPSLRRLVIVGGTEGGL 385

Query: 271 VSFPPEKDTGKALPASLKHLSIWNFPNLERISSI--ENLTSFESLQLCCCPKLQKFPDNG 328
            SF  E      LP++L  L I +FP+L+ + ++  ENLTS E L +  C KL+ FP  G
Sbjct: 386 ESFSEE---WLLLPSTLFSLDISDFPDLKSLDNLGLENLTSLERLVIWNCDKLKSFPKQG 442

Query: 329 LPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY 371
           LP SL  LEIY CPL+++R ++DKG+ W  IA IP + +   Y
Sbjct: 443 LPASLSVLEIYRCPLLKKRCQRDKGKEWRKIAHIPSIEMSHEY 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 154/310 (49%), Gaps = 53/310 (17%)

Query: 118 CPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLD 177
           C SLTS+    ELP+ L+ + V  CSKL  LS R  L   LKHL I SC NLES+ +   
Sbjct: 248 CNSLTSI---GELPSALKYLQVCSCSKLKSLSSRDKLPAGLKHLAIDSCENLESMPDRFQ 304

Query: 178 DNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCI--- 234
           DN SLE ++I+ C NL++LP GL  L  L+ + I  CP + SF A   P NL  + I   
Sbjct: 305 DNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALVSFAAEGLPINLRRLFIIKC 364

Query: 235 -----------------DYEKIYKPLIL---ERG---------------------PGLHR 253
                            +    Y P I+   E G                      G+H+
Sbjct: 365 DGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSLTYLATVDLKICELLFNWGMHK 424

Query: 254 FTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFE 311
            +++R L + GG     +SFP   D G  LP++L  LSI +FPNLE +S    +NL+S E
Sbjct: 425 LSALRTLIIQGG--FSHISFP-SVDMGVRLPSALNRLSIEDFPNLEYLSYSGFQNLSSLE 481

Query: 312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY 371
            L +  CPKL  FP  GLP+SLL L I  CPL+ ++  K + + W  I  IP + ID   
Sbjct: 482 RLSISDCPKLTSFPGKGLPSSLLELRIRACPLLVQQI-KGRVKEWLKIRHIPYINIDGKV 540

Query: 372 VIDPKAQRQL 381
           V DP  Q  L
Sbjct: 541 VSDPATQVYL 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 144/299 (48%), Gaps = 55/299 (18%)

Query: 113 LQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI 172
           L I  CPSLT+L S  +LPATL ++ +  C KL  LS  G L  AL++L I S   L+ I
Sbjct: 444 LDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSIPKLQKI 503

Query: 173 AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTA---------- 222
           AE L  NT LE ++I+ C  LK+LP  L NL+ L+   I  C +  SF A          
Sbjct: 504 AERLHQNTFLECIKIWNCHGLKSLPEDLHNLSKLRQFQIVWCTSFSSFPAAGLPSNPRVL 563

Query: 223 ---NC----------------------------------FPTNLASVCIDYEKIYKPLIL 245
              NC                                   PTNL  + +   K YKP+  
Sbjct: 564 GIKNCKNLKALPNGMRNLTSLQKLDISNRLDSLPSPQEGLPTNLIELNMIDLKFYKPMF- 622

Query: 246 ERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKA--LPASLKHLSIWNFPNLERIS- 302
               GL + TS+  L++ G EC  V SFP E++ G    LP SL  L I  F NLE +S 
Sbjct: 623 --EWGLQQLTSLIKLSIHG-ECLDVDSFPGERENGAMMLLPNSLSILCISYFQNLECLSP 679

Query: 303 -SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIA 360
              +NLTS   L++  C KL   P  GLP SL +LEI  CPL+ +    +KGQ WS IA
Sbjct: 680 KGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIA 738

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495085|ref|XP_003634909.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 136/245 (55%), Gaps = 16/245 (6%)

Query: 134  LENIYVDRCSKLAFLSLRGNLSK----ALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189
            LE +++  C+ L  LS+R  L      +L+ L I +C NL S   G     +L  ++I  
Sbjct: 1101 LEKLHLWNCTNLESLSIRDGLHHVDLTSLRSLEIRNCPNLVSFPRGGLPTPNLRMLDIRN 1160

Query: 190  CQNLKALPNGLRNL-TSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERG 248
            C+ LK+LP G+  L TSLQ L I +CP I SF     PTNL+S+ I      K L     
Sbjct: 1161 CKKLKSLPQGMHTLLTSLQDLYISNCPEIDSFPEGGLPTNLSSLYI--MNCNKLLACRME 1218

Query: 249  PGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISS--IEN 306
             GL     +R L + G E      FP E+     LP++L  L I  FPNL+ + +  +++
Sbjct: 1219 WGLQTLPFLRTLQIAGYE---KERFPEER----FLPSTLTSLGIRGFPNLKSLDNKGLQH 1271

Query: 307  LTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVR 366
            LTS E+L++  C KL+ FP  GLP+SL RL I  CPL+++R ++DKG+ W  ++ IPC+ 
Sbjct: 1272 LTSLETLEIWKCEKLKSFPKQGLPSSLSRLYIERCPLLKKRCQRDKGKEWPNVSHIPCIA 1331

Query: 367  IDCHY 371
             D HY
Sbjct: 1332 FDIHY 1336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487158|ref|XP_003633523.1| PREDICTED: putative disease resistance protein RGA4-like, partial [Vitis vinifera]

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 149/263 (56%), Gaps = 12/263 (4%)

Query: 112  QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLES 171
            ++QI+ CPSL   + K ELP +L+ + ++ C  +  L      +  L+ L I  CS+L S
Sbjct: 985  RVQIMRCPSLL-FFPKGELPTSLKQLIIEDCENVKSLPEGIMRNCNLEQLNIEGCSSLTS 1043

Query: 172  IAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANC--FPTNL 229
               G +  ++L+ + I+ C NL+ LP+ L+NLTSL+YL I+ CP++ SF      F  NL
Sbjct: 1044 FPSG-ELPSTLKHLVIWNCGNLELLPDHLQNLTSLEYLKIRGCPSLESFPEGGLGFAPNL 1102

Query: 230  ASVCI-DYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGK-ALPASL 287
              V I D E +  PL      GL+R  S++ LT+  G    VVSF  + D     LP SL
Sbjct: 1103 RDVDITDCENLKTPL---SEWGLNRLLSLKNLTIAPGGYQNVVSFSHDHDDCHLRLPTSL 1159

Query: 288  KHLSIWNFPNLERISSIE--NLTSFESLQLCCCPKLQKF-PDNGLPTSLLRLEIYGCPLI 344
              L I +F NLE ++S+    L S E L +  CPKLQ+F P  GLP +L  +EI GCP+I
Sbjct: 1160 TRLHIGDFQNLESMASLPLPTLISLEDLCISDCPKLQQFLPKEGLPATLGYIEIQGCPII 1219

Query: 345  EERFEKDKGQYWSLIADIPCVRI 367
            E+R  K +G+ W  +A IP + I
Sbjct: 1220 EKRCLKGRGKDWPHVAHIPAIHI 1242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480367|ref|XP_003632438.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 140/247 (56%), Gaps = 13/247 (5%)

Query: 134 LENIYVDRCSKLAFL----SLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189
           LE + +  C+ L  L     +R     +L+ +YI  C NL S  +G    ++L ++ I  
Sbjct: 725 LETLNIWGCTNLESLYIPDGVRNMDLTSLQSIYIWDCPNLVSFPQGGLPASNLRSLWIRN 784

Query: 190 CQNLKALPNGLRNL-TSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERG 248
           C  LK+LP  +  L TSL  L I DCP I SF     PTNL+S+ I     YK +  ++ 
Sbjct: 785 CMKLKSLPQRMHTLLTSLDDLWILDCPEIVSFPEGDLPTNLSSLEI--WNCYKLMESQKE 842

Query: 249 PGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSI--EN 306
            GL    S+R LT+ GG   G+ SF  E      LP++L   SI++FP+L+ + ++  +N
Sbjct: 843 WGLQTLPSLRYLTIRGGTEEGLESFSEE---WLLLPSTLFSFSIFDFPDLKSLDNLGLQN 899

Query: 307 LTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVR 366
           LTS E+L++  C KL+ FP  GLP SL  LEI+ CPL+++R ++DKG+ W  IA IP + 
Sbjct: 900 LTSLEALRIVDCVKLKSFPKQGLP-SLSVLEIHKCPLLKKRCQRDKGKEWRKIAHIPKIV 958

Query: 367 IDCHYVI 373
           +D   ++
Sbjct: 959 MDAEVIV 965

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449872|ref|XP_002265429.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 139/258 (53%), Gaps = 15/258 (5%)

Query: 118  CPSLTSLWSKSELPATLENIYVDRCSKLAFL----SLRGNLSKALKHLYIISCSNLESIA 173
            C SLTS          LE +Y+  C  L        LR     +L+ + I  C NL S  
Sbjct: 1068 CDSLTSF--PLAFFTKLETLYIG-CENLESFYIPDGLRNMDLTSLRRIEIYDCPNLVSFP 1124

Query: 174  EGLDDNTSLETMEIFICQNLKALPNGLRNL-TSLQYLLIQDCPTIGSFTANCFPTNLASV 232
            +G    ++L  +EI++C  LK+LP  +  L TSL+ L I DCP I SF     PTNL+S+
Sbjct: 1125 QGGLPASNLRNLEIWVCMKLKSLPQRMHTLLTSLENLTIDDCPEIVSFPEGGLPTNLSSL 1184

Query: 233  CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSI 292
             I     YK +   +  GL    S+  L + GG   G+ SF  E      LP++L  L I
Sbjct: 1185 YI--WDCYKLMESRKEWGLQTLPSLGRLVIAGGTEEGLESFSEE---WLLLPSTLFSLEI 1239

Query: 293  WNFPNLERISSI--ENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEK 350
             +FP+L+ + ++  ENLTS E L +  C KL+ FP  GLP SL  LEI+ CP++++R ++
Sbjct: 1240 RSFPDLKSLDNLGLENLTSLERLVISDCVKLKSFPKQGLPASLSILEIHRCPVLKKRCQR 1299

Query: 351  DKGQYWSLIADIPCVRID 368
            DKG+ W  IA IP +++D
Sbjct: 1300 DKGKEWRKIAHIPRIKMD 1317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.605	0.195	0.3	2.8e-16
TAIR|locus:2151476	1168	VICTR "VARIATION IN COMPOUND T	0.392	0.154	0.303	5.5e-10
TAIR|locus:2151466	1353	VICTL "VARIATION IN COMPOUND T	0.392	0.133	0.303	6.5e-10
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.479	0.185	0.265	5.2e-08
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.483	0.182	0.262	3.1e-07
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.459	0.106	0.267	4.3e-07
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.498	0.192	0.259	6.4e-07
TAIR|locus:2010738	1007	WRR4 "WHITE RUST RESISTANCE 4"	0.446	0.203	0.264	1.8e-06
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.477	0.180	0.263	2.3e-06
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.440	0.112	0.278	4.7e-06

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 90/300 (30%), Positives = 140/300 (46%)

Query:    78 PGKRSNNGPVSVTLKDPEVLDCPVCYEPLTIPVYQLQII----PCPSLTSLWSKSELPAT 133
             PG        ++ ++D + L+     +P T    QL+ +     C +L + +  S  P  
Sbjct:  1133 PGSHPPTTLKTLYIRDCKKLNFTESLQP-TRSYSQLEYLFIGSSCSNLVN-FPLSLFPK- 1189

Query:   134 LENIYVDRCSKLAFLSLRGNLSK---ALKHLYIISCSNLESIAEGLDDNTSLETMEIFIC 190
             L ++ +  C      S+   L     AL+ L I  C NLE+  +G      L +M +  C
Sbjct:  1190 LRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNC 1249

Query:   191 QNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPG 250
             + L+ALP  L  LTSL  L I  CP I +     FP+NL ++CI       P I E G  
Sbjct:  1250 KKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISLCDKLTPRI-EWG-- 1306

Query:   251 LHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLT 308
             L    ++R L + GG    + SFP E   G  LP S+  L I  F NL+ ++     +  
Sbjct:  1307 LRDLENLRNLEIDGGNE-DIESFPEE---G-LLPKSVFSLRISRFENLKTLNRKGFHDTK 1361

Query:   309 SFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRID 368
             + E++++  C KLQ   D  LP  L  L I  C L+ E F + + +++ ++ +IP V ID
Sbjct:  1362 AIETMEISGCDKLQISIDEDLPP-LSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEID 1419

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151476 VICTR "VARIATION IN COMPOUND TRIGGERED ROOT growth response" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 62/204 (30%), Positives = 95/204 (46%)

Query:   153 NLSKA--LKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL 210
             +LSKA  ++ L    C +L  +   + +   L  + +  C  L+ LP G  NL SL YL 
Sbjct:   648 DLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGF-NLKSLDYLN 706

Query:   211 IQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGE---- 266
               +C  + +F    F TN++++ +    I      E  P    F +VR L++   +    
Sbjct:   707 FNECWKLRTFPE--FATNISNLILAETSI------EEYPSNLYFKNVRELSMGKADSDEN 758

Query:   267 -CCGVVSFPPEKDTGKALPASLKHLSIWNFPNL-ERISSIENLTSFESLQLCCCPKLQKF 324
              C GV  F P       L  +L  L +WN PNL E  SS +NL + E L +C C  L+  
Sbjct:   759 KCQGVKPFMP------MLSPTLTLLELWNIPNLVELSSSFQNLNNLERLDICYCRNLESL 812

Query:   325 PDNGLPTSLLRLEIYGCPLIEERF 348
             P      SL+ L ++GC  ++ RF
Sbjct:   813 PTGINLESLVSLNLFGCSRLK-RF 835

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2151466 VICTL "VARIATION IN COMPOUND TRIGGERED ROOT growth response-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 62/204 (30%), Positives = 95/204 (46%)

Query:   153 NLSKA--LKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL 210
             +LSKA  ++ L    C +L  +   + +   L  + +  C  L+ LP G  NL SL YL 
Sbjct:   647 DLSKATNIEKLDFGHCWSLVELPSSIRNLNKLLELNMEYCGELETLPTGF-NLKSLDYLN 705

Query:   211 IQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGE---- 266
               +C  + +F    F TN++++ +    I      E  P    F +VR L++   +    
Sbjct:   706 FNECWKLRTFPE--FATNISNLILAETSI------EEYPSNLYFKNVRELSMGKADSDEN 757

Query:   267 -CCGVVSFPPEKDTGKALPASLKHLSIWNFPNL-ERISSIENLTSFESLQLCCCPKLQKF 324
              C GV  F P       L  +L  L +WN PNL E  SS +NL + E L +C C  L+  
Sbjct:   758 KCQGVKPFMP------MLSPTLTLLELWNIPNLVELSSSFQNLNNLERLDICYCRNLESL 811

Query:   325 PDNGLPTSLLRLEIYGCPLIEERF 348
             P      SL+ L ++GC  ++ RF
Sbjct:   812 PTGINLESLVSLNLFGCSRLK-RF 834

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 64/241 (26%), Positives = 119/241 (49%)

Query:   112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFL-SLRGNLSKALKHLYIISCSNLE 170
             +L +I C SL  L S       L+ ++++RCS L  L S  GN++ +LK L +  CS+L 
Sbjct:   708 ELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVT-SLKELNLSGCSSLL 766

Query:   171 SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLA 230
              I   + +  +L+ +    C +L  LP+ + N T+L+ L + +C ++      C P+++ 
Sbjct:   767 EIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSL----MEC-PSSML 821

Query:   231 SVC-IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKH 289
             ++  ++   +   L L + P +     + L +L+  +C  ++  P   +       +L  
Sbjct:   822 NLTRLEDLNLSGCLSLVKLPSIGNV--INLQSLYLSDCSSLMELPFTIENA----TNLDT 875

Query:   290 LSIWNFPNL-ERISSIENLTSFESLQLCCCPKLQKFP---DNGLPTSLLRLEIYGCP-LI 344
             L +    NL E  SSI N+T+ +SL L  C  L++ P   +N +  +L  L +  C  L+
Sbjct:   876 LYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAI--NLQSLSLMKCSSLV 933

Query:   345 E 345
             E
Sbjct:   934 E 934

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 63/240 (26%), Positives = 109/240 (45%)

Query:   112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLES 171
             +L++  C SL  L S  E   +L+ +Y+ RCS L  L   GN +K L+ LY+ +CS+LE 
Sbjct:   743 ELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNATK-LEELYLENCSSLEK 801

Query:   172 IAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANC-FPTNLA 230
             +   ++ N +L+ + +  C  +  LP  + N T+LQ L + +C ++     +    TNL 
Sbjct:   802 LPPSINAN-NLQQLSLINCSRVVELP-AIENATNLQKLDLGNCSSLIELPLSIGTATNLK 859

Query:   231 SVCID-YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKH 289
              + I     + K   L    G    T+++   L    C  +V  P   +       +L  
Sbjct:   860 ELNISGCSSLVK---LPSSIG--DITNLKEFDL--SNCSNLVELPININLKFLDTLNLAG 912

Query:   290 LS-IWNFPNLE-RISS--IENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIE 345
              S + +FP +  +I +   + ++    L++  C  L   P   LP SL  L    C  +E
Sbjct:   913 CSQLKSFPEISTKIFTDCYQRMSRLRDLRINNCNNLVSLPQ--LPDSLAYLYADNCKSLE 970

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 61/228 (26%), Positives = 107/228 (46%)

Query:   118 CPSLTSLWSKSELPATLENIYVDRCSKLAFL-SLRGNLSKALKHLYIISCSNLESIAEGL 176
             C SL  L         L+N+ +  CS L  L S  GN    L++L + +CS+L  +   +
Sbjct:   792 CSSLVELPFMGNA-TNLQNLDLGNCSSLVELPSSIGNAIN-LQNLDLSNCSSLVKLPSFI 849

Query:   177 DDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVC-ID 235
              + T+LE +++  C +L  +P  + ++T+L  L +  C ++        P+++ ++  + 
Sbjct:   850 GNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVEL-----PSSVGNISELQ 904

Query:   236 YEKIYKPLILERGPG-LHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWN 294
                ++    L + P      T++  L L G  C  +V  P     G     +L+ L++ N
Sbjct:   905 VLNLHNCSNLVKLPSSFGHATNLWRLDLSG--CSSLVELP--SSIGNI--TNLQELNLCN 958

Query:   295 FPNLERI-SSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341
               NL ++ SSI NL    +L L  C KL+  P N    SL RL++  C
Sbjct:   959 CSNLVKLPSSIGNLHLLFTLSLARCQKLEALPSNINLKSLERLDLTDC 1006

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 63/243 (25%), Positives = 108/243 (44%)

Query:   108 IPVYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCS 167
             I + +L +  C SL  L S       LE++ ++ CS L  L   G+    L+ L +  CS
Sbjct:   699 INLRKLILSNCSSLIKLPSCIGNAINLEDLDLNGCSSLVELPSFGDAIN-LQKLLLRYCS 757

Query:   168 NLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPT 227
             NL  +   + +  +L  ++++ C +L  LP+ + N  +L  L +  C  +    ++    
Sbjct:   758 NLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNA 817

Query:   228 -NLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS 286
              NL    +D  +  K L L    G     ++ L  L   +C  ++  P     G A   +
Sbjct:   818 INLQK--LDLRRCAKLLELPSSIG----NAINLQNLLLDDCSSLLELP--SSIGNA--TN 867

Query:   287 LKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIE 345
             L ++++ N  NL  +  SI NL   + L L  C KL+  P N    SL  L +  C +++
Sbjct:   868 LVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPININLESLDILVLNDCSMLK 927

Query:   346 ERF 348
              RF
Sbjct:   928 -RF 929

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2010738 WRR4 "WHITE RUST RESISTANCE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 60/227 (26%), Positives = 104/227 (45%)

Query:   121 LTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNT 180
             L  LW  ++  A L+ I + R S L  L    N +  L+ LY+ SC+ L  +   + +  
Sbjct:   613 LQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATN-LEDLYVGSCTALVELPSSIGNLH 671

Query:   181 SLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIY 240
              L  + ++ C++L+ +P+ L NLTSL +L +  C  +  F     PT++  V     ++ 
Sbjct:   672 KLAHIMMYSCESLEVIPS-LINLTSLTFLNMNKCSRLRRFPD--IPTSIEDV-----QVT 723

Query:   241 KPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLER 300
                + E    L   + ++ + + G     +  F  E      LP S+ H++I N   +E 
Sbjct:   724 GTTLEELPASLTHCSGLQTIKISGS--VNLKIFYTE------LPVSVSHINISN-SGIEW 774

Query:   301 ISS--IENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIE 345
             I+   I+ L +   L L  C +L   P+  LP SL  L+   C  +E
Sbjct:   775 ITEDCIKGLHNLHDLCLSGCKRLVSLPE--LPRSLKILQADDCDSLE 819

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 63/239 (26%), Positives = 110/239 (46%)

Query:   112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFL-SLRGNLSKALKHLYIISCSNLE 170
             +L++  C SL  L S       L+ I    C  L  L S  GN +  LK L +  CS+L+
Sbjct:   725 KLELSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPSSIGNATN-LKELDLSCCSSLK 783

Query:   171 SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLA 230
              +   + + T+L+ + +  C +LK LP+ + N T+L+ L +  C ++        P+++ 
Sbjct:   784 ELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCTNLKELHLTCCSSLIKL-----PSSIG 838

Query:   231 SVCIDYEKIYKP---LILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASL 287
             +  I+ EK+       ++E    + + T++++L L G   C +V  P     G      L
Sbjct:   839 NA-INLEKLILAGCESLVELPSFIGKATNLKILNL-GYLSC-LVELP--SFIGNL--HKL 891

Query:   288 KHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEE 346
               L +     L+ + +  NL     L L  C  L+ FP   + T++ RL + G   IEE
Sbjct:   892 SELRLRGCKKLQVLPTNINLEFLNELDLTDCILLKTFPV--ISTNIKRLHLRGTQ-IEE 947

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 144 (55.7 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 61/219 (27%), Positives = 102/219 (46%)

Query:   130 LPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEI 187
             LP +LE +++   S L  L      NL+  LK L +   ++L+S+   L   T+LE ++I
Sbjct:  1569 LPQSLEELFISEYS-LETLQPCFLTNLT-CLKQLEVSGTTSLKSLE--LQSCTALEHLKI 1624

Query:   188 FICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEK--IYKPLIL 245
               C +L  L  GL+ L +L+++ +  CP +  +  +        +C   E+  I  P IL
Sbjct:  1625 QGCASLATL-EGLQFLHALRHMKVFRCPGLPPYLGSSSEQGY-ELCPRLERLDIDDPSIL 1682

Query:   246 ERGPGLHRFTSVRLLTLFGGECCG--VVSFPPEKDTGKALPASLKHLSIWNFPNLERI-S 302
                   H  TS++ L L     CG  V     E++    L  SL+ L      NL  + +
Sbjct:  1683 TTSFCKH-LTSLQRLEL---NYCGSEVARLTDEQERALQLLTSLQELRFKYCYNLIDLPA 1738

Query:   303 SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341
              + +L S + L++  C  + + P+ GLP S   L+I  C
Sbjct:  1739 GLHSLPSLKRLEIRSCRSIARLPEKGLPPSFEELDIIAC 1777

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00660113 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	459
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-09

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 67/231 (29%), Positives = 95/231 (41%), Gaps = 59/231 (25%)

Query: 153 NLSKA--LKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL 210
           +LS A  L+ L +  CS+L  +   +     LE +++  C+NL+ LP G+ NL SL  L 
Sbjct: 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710

Query: 211 IQDCPTIGSF---------------TANCFPTNLASVCIDY--------EKIYK------ 241
           +  C  + SF                   FP+NL    +D         EK+++      
Sbjct: 711 LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770

Query: 242 PLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS------LKHLSIWNF 295
           PL+    P L R     + +L                    LP+S      L+HL I N 
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLV------------------ELPSSIQNLHKLEHLEIENC 812

Query: 296 PNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEE 346
            NLE + +  NL S ESL L  C +L+ FPD     S L L   G   IEE
Sbjct: 813 INLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG---IEE 860

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	459
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.58
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.57
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.41
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.31
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.27
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.19
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.19
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.14
PRK15386	426	type III secretion protein GogB; Provisional	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
KOG4341	483	consensus F-box protein containing LRR [General fu	98.83
KOG4341	483	consensus F-box protein containing LRR [General fu	98.8
PRK15386	426	type III secretion protein GogB; Provisional	98.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.51
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.49
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.45
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.42
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.4
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.67
PLN03150	623	hypothetical protein; Provisional	97.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.58
PLN03150	623	hypothetical protein; Provisional	97.48
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.16
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.92
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.51
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.3
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.84
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.56
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.59
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	83.02

>PLN03210 Resistant to P

Probab=99.97  E-value=2.3e-30  Score=289.74  Aligned_cols=342  Identities=20%  Similarity=0.287  Sum_probs=245.4

Q ss_pred             CCCCCcCceEEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecccccccccc
Q 039619           86 PVSVTLKDPEVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKAL  158 (459)
Q Consensus        86 ~lp~~L~~L~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L  158 (459)
                      .+|.+|+.|++.+    +.++.+|       |++|++.+ +.++.+|.....+++|+.|+++++..++.+|....+ ++|
T Consensus       586 ~lp~~Lr~L~~~~----~~l~~lP~~f~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l-~~L  659 (1153)
T PLN03210        586 YLPPKLRLLRWDK----YPLRCMPSNFRPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA-TNL  659 (1153)
T ss_pred             hcCcccEEEEecC----CCCCCCCCcCCccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCccccC-Ccc
Confidence            5677899999988    4566666       88888877 567788766666778899999888888888866667 888


Q ss_pred             ceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEE------
Q 039619          159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASV------  232 (459)
Q Consensus       159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L------  232 (459)
                      ++|++++|..+..+|..+..+++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.  .+++|++|      
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~  736 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA  736 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc
Confidence            999998888888888888888889999998888888888765 688888888888877666553  12333333      


Q ss_pred             -----------------------------------------------EEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619          233 -----------------------------------------------CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG  265 (459)
Q Consensus       233 -----------------------------------------------~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~  265 (459)
                                                                     +++++...... |.   .++++++|+.|++++ 
T Consensus       737 i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~---si~~L~~L~~L~Ls~-  811 (1153)
T PLN03210        737 IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PS---SIQNLHKLEHLEIEN-  811 (1153)
T ss_pred             cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc-Ch---hhhCCCCCCEEECCC-
Confidence                                                           33332111111 22   456778888888888 


Q ss_pred             cCCCceecCCCCCCCccCCCCcceEEeecCCCCC--------------------ccC-CCCCCCCCCEEeccCCCCCCcC
Q 039619          266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE--------------------RIS-SIENLTSFESLQLCCCPKLQKF  324 (459)
Q Consensus       266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~--------------------~l~-~l~~l~~L~~L~l~~c~~l~~l  324 (459)
                       |..++.+|...     .+++|+.|++++|..++                    .+| ++..+++|+.|++++|++++.+
T Consensus       812 -C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        812 -CINLETLPTGI-----NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             -CCCcCeeCCCC-----CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence             77787777654     45666666666665443                    444 5566788888999999888888


Q ss_pred             CCC-CCCCCcceEEeeCCchhHHhhhcCcCCc--------cccccCCCeEEeCceeeeCHHHHhhhhhcC---cEEecCC
Q 039619          325 PDN-GLPTSLLRLEIYGCPLIEERFEKDKGQY--------WSLIADIPCVRIDCHYVIDPKAQRQLIQTG---DYTIPHS  392 (459)
Q Consensus       325 p~~-~l~~sL~~L~i~~c~~L~~~~~~~~~~~--------~~~i~~i~~l~~~~~~~l~~~~~~~~~~~~---~~~~p~~  392 (459)
                      |.. .-+++|+.+++.+|+.|+..........        ...+.....+.+.+|+++++.+.  +.++.   .+.+||.
T Consensus       886 ~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~--l~~~~~~~~~~l~g~  963 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL--LQQQSIFKQLILSGE  963 (1153)
T ss_pred             CcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh--hcccccceEEECCCc
Confidence            763 2257888889999988875422110000        00111223467889999998774  23222   4789999


Q ss_pred             Cc-eecccccccccCCcEEE-EeCCCCcc--cccCceeeeEEeecccc---cceeEEEEeccc-ccccc
Q 039619          393 SA-HFFPYQLIKLISGRTTA-FADEPSEQ--DDSGLRAPLVVTGLSLS---NRIKLYYYCDPY-ELGKW  453 (459)
Q Consensus       393 ~~-~~~~~~~~~~~~g~~~~-~~~~~~~~--~~~gf~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~  453 (459)
                      ++ .||.|+..    |.+++ |.+++.|.  .|.||++|+|+++....   ..+.+.|.|+++ ..|.+
T Consensus       964 evp~~f~hr~~----g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 1028 (1153)
T PLN03210        964 EVPSYFTHRTT----GASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNH 1028 (1153)
T ss_pred             cCchhccCCcc----cceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCc
Confidence            99 99999999    99998 99999887  69999999999886542   366788888887 44544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=2.8e-20  Score=208.83  Aligned_cols=281  Identities=18%  Similarity=0.227  Sum_probs=197.8

Q ss_pred             CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619           24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY  103 (459)
Q Consensus        24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~  103 (459)
                      +.+|++|++.+..-...|..  ...+++|+.|.+.++..+.          .+     ..... .++|++|++++|   .
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~----------~i-----p~ls~-l~~Le~L~L~~c---~  668 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDG--VHSLTGLRNIDLRGSKNLK----------EI-----PDLSM-ATNLETLKLSDC---S  668 (1153)
T ss_pred             ccCCcEEECcCccccccccc--cccCCCCCEEECCCCCCcC----------cC-----Ccccc-CCcccEEEecCC---C
Confidence            45666666665432222222  2356677777776554321          00     11112 348888888888   4


Q ss_pred             CCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCcccccc
Q 039619          104 EPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEG  175 (459)
Q Consensus       104 ~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~  175 (459)
                      .+..+|        |+.|++++|..++.+|... .+++|+.|++++|..++.+|..  . .+|++|+++++ .++.+|..
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~-~nL~~L~L~~n-~i~~lP~~  743 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--S-TNISWLDLDET-AIEEFPSN  743 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--c-CCcCeeecCCC-cccccccc
Confidence            555555        8888888888888888444 5568888888888877777622  2 66777777664 34555432


Q ss_pred             C------------------------------CCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCC
Q 039619          176 L------------------------------DDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCF  225 (459)
Q Consensus       176 l------------------------------~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~  225 (459)
                      +                              ..+++|+.|++++|..+..+|..++++++|+.|++++|..++.+|....
T Consensus       744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~  823 (1153)
T PLN03210        744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN  823 (1153)
T ss_pred             ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCC
Confidence            2                              1135788888888888888898899999999999999999999987666


Q ss_pred             CCCccEEEEec-CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-C
Q 039619          226 PTNLASVCIDY-EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-S  303 (459)
Q Consensus       226 ~~~L~~L~l~~-~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~  303 (459)
                      +++|++|++++ +.+....        ...++|+.|++++   +.++.+|...+    .+++|+.|++++|++++.++ .
T Consensus       824 L~sL~~L~Ls~c~~L~~~p--------~~~~nL~~L~Ls~---n~i~~iP~si~----~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTFP--------DISTNISDLNLSR---TGIEEVPWWIE----KFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             ccccCEEECCCCCcccccc--------ccccccCEeECCC---CCCccChHHHh----cCCCCCEEECCCCCCcCccCcc
Confidence            88999999998 5554221        2346899999988   57888887663    78899999999999999999 8


Q ss_pred             CCCCCCCCEEeccCCCCCCcCCCCCCC--------------CCcceEEeeCCchhH
Q 039619          304 IENLTSFESLQLCCCPKLQKFPDNGLP--------------TSLLRLEIYGCPLIE  345 (459)
Q Consensus       304 l~~l~~L~~L~l~~c~~l~~lp~~~l~--------------~sL~~L~i~~c~~L~  345 (459)
                      +..+++|+.+++++|..++.++....+              ++...+.+.+|.+|.
T Consensus       889 ~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            889999999999999999876532221              223445677887665

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=3.9e-19  Score=198.41  Aligned_cols=150  Identities=18%  Similarity=0.215  Sum_probs=62.8

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  188 (459)
                      |++|++++|.....+|.....+++|++|++++|.....+|. .+.+ ++|++|+++++.....+|..+..+++|++|+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            45555544333333443333344555555544433223331 1333 444455554443333344444444555555554


Q ss_pred             cccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          189 ICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       189 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      +|.....+|..++.+++|++|++++|.....+|.. ..+++|++|+++++.+.... +.   .+..+++|+.|++++
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~---~~~~l~~L~~L~l~~  317 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PE---LVIQLQNLEILHLFS  317 (968)
T ss_pred             CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-Ch---hHcCCCCCcEEECCC
Confidence            44333334444444444444444443322222222 22344444444444433222 22   334444444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=2.3e-18  Score=192.16  Aligned_cols=146  Identities=13%  Similarity=0.028  Sum_probs=69.2

Q ss_pred             CcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccce
Q 039619           90 TLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKH  160 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~  160 (459)
                      +|++|++++|   .-...+|        |++|+++++.....+|.....+++|++|++++|.....+|. .+.+ ++|++
T Consensus       189 ~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~  264 (968)
T PLN00113        189 SLEFLTLASN---QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQY  264 (968)
T ss_pred             CCCeeeccCC---CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC-CCCCE
Confidence            5667777665   2222233        66666666444444554445555666666666533333331 2344 55555


Q ss_pred             EEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcc
Q 039619          161 LYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKI  239 (459)
Q Consensus       161 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l  239 (459)
                      |+++++.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|+.|+++++.+
T Consensus       265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence            555554333344444555555555555554333344444444455555555444322222221 2234444444444333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=1.8e-19  Score=177.54  Aligned_cols=298  Identities=17%  Similarity=0.149  Sum_probs=223.2

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeecccccc----ccccCCCCCCCcccCCCCCCCCCCCCC------CcC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETR----AADKGGGSKGNKTADPGKRSNNGPVSV------TLK   92 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lp~------~L~   92 (459)
                      .+.+|++|++....-....  .....+|.|+.+.++.+.-    +...-+...++.++|.+.. .....|.      ++-
T Consensus        53 ~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   53 RLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSI  129 (1255)
T ss_pred             HHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcE
Confidence            4677888877654332211  2334688888888876531    1111223333444444332 2233444      455


Q ss_pred             ceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCccccccCcEEEeecCC----Cceeeccccccccccc
Q 039619           93 DPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCS----KLAFLSLRGNLSKALK  159 (459)
Q Consensus        93 ~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~----~l~~l~~~~~lp~~L~  159 (459)
                      +|++++    +++.++|         |-.|+|++ +.+..+|+.+.-+.+|++|.+++.+    ++..+|   .+ ++|+
T Consensus       130 VLNLS~----N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP---sm-tsL~  200 (1255)
T KOG0444|consen  130 VLNLSY----NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP---SM-TSLS  200 (1255)
T ss_pred             EEEccc----CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc---cc-hhhh
Confidence            678888    6788888         78889987 7888999888888899999998854    344555   55 8889


Q ss_pred             eEEeecccC-CccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecC
Q 039619          160 HLYIISCSN-LESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYE  237 (459)
Q Consensus       160 ~L~l~~c~~-l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~  237 (459)
                      .|++++.+. +..+|.++..+.+|..++++.+ ++..+|+.+.++++|+.|++++ +.++.+... +...+|++|+++.|
T Consensus       201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRN  278 (1255)
T ss_pred             hhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccc
Confidence            999988543 5567999999999999999864 8889999999999999999998 567777644 55789999999999


Q ss_pred             cccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEecc
Q 039619          238 KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLC  316 (459)
Q Consensus       238 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~  316 (459)
                      +++..  |.   .+.+++.|+.|.+.++ --..+.+|.++|    .+.+|+.+...+ |+++-+| ++..|..|+.|.++
T Consensus       279 QLt~L--P~---avcKL~kL~kLy~n~N-kL~FeGiPSGIG----KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  279 QLTVL--PD---AVCKLTKLTKLYANNN-KLTFEGIPSGIG----KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             hhccc--hH---HHhhhHHHHHHHhccC-cccccCCccchh----hhhhhHHHHhhc-cccccCchhhhhhHHHHHhccc
Confidence            98743  44   7889999999999873 224678999886    888999999998 8999999 99999999999996


Q ss_pred             CCCCCCcCCCC-CCCCCcceEEeeCCchhHH
Q 039619          317 CCPKLQKFPDN-GLPTSLLRLEIYGCPLIEE  346 (459)
Q Consensus       317 ~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~  346 (459)
                      . +.+-.+|+. .+++.|+.|++++.|+|.-
T Consensus       348 ~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  348 H-NRLITLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             c-cceeechhhhhhcCCcceeeccCCcCccC
Confidence            5 778888873 4589999999999988864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.64  E-value=5.5e-17  Score=159.16  Aligned_cols=274  Identities=15%  Similarity=0.214  Sum_probs=159.0

Q ss_pred             CCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCC
Q 039619           25 PKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYE  104 (459)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~  104 (459)
                      +.-+.|++++.. +..|....+..+|+|+++.+..+.-..                +...+....+|+.|++..    +.
T Consensus        78 ~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt~----------------IP~f~~~sghl~~L~L~~----N~  136 (873)
T KOG4194|consen   78 SQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELTR----------------IPRFGHESGHLEKLDLRH----NL  136 (873)
T ss_pred             cceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhhh----------------cccccccccceeEEeeec----cc
Confidence            345557776542 233444445567888888877554211                111123334677777776    34


Q ss_pred             CCc--------cc-eeEEEEecCCCCccccCCcccc--ccCcEEEeecCCCceeec--cccccccccceEEeecccCCcc
Q 039619          105 PLT--------IP-VYQLQIIPCPSLTSLWSKSELP--ATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLES  171 (459)
Q Consensus       105 l~~--------lp-L~~L~l~~c~~l~~lp~~~~~~--~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~  171 (459)
                      +.+        +| |+.|||+. +.+..+| .-.++  .++++|++++ +.++.+.  ....+ .+|..|.++. +.++.
T Consensus       137 I~sv~se~L~~l~alrslDLSr-N~is~i~-~~sfp~~~ni~~L~La~-N~It~l~~~~F~~l-nsL~tlkLsr-Nritt  211 (873)
T KOG4194|consen  137 ISSVTSEELSALPALRSLDLSR-NLISEIP-KPSFPAKVNIKKLNLAS-NRITTLETGHFDSL-NSLLTLKLSR-NRITT  211 (873)
T ss_pred             cccccHHHHHhHhhhhhhhhhh-chhhccc-CCCCCCCCCceEEeecc-cccccccccccccc-chheeeeccc-Ccccc
Confidence            433        33 78888877 5666666 33444  4788888877 5666654  22456 6777777777 46666


Q ss_pred             ccc-cCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEecCcccccccccC
Q 039619          172 IAE-GLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDYEKIYKPLILER  247 (459)
Q Consensus       172 lp~-~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~l~~~~~~~~  247 (459)
                      +|. .|.++++|+.|++..+ .++.. -..+..+++|+.|.+.. +.+..+.++.+  +.++++|++..|++.... .. 
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g-  287 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EG-  287 (873)
T ss_pred             cCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhh-cc-
Confidence            754 3455888888887765 33322 12456677777777755 34555655533  677777777776665432 22 


Q ss_pred             CCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcC
Q 039619          248 GPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKF  324 (459)
Q Consensus       248 ~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l  324 (459)
                        .+.++++|+.|+++.   +.+..+. ..|    .+.++|+.|++++ |.+++++  .+..+..|++|.+++ +.++.+
T Consensus       288 --~lfgLt~L~~L~lS~---NaI~rih~d~W----sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l  356 (873)
T KOG4194|consen  288 --WLFGLTSLEQLDLSY---NAIQRIHIDSW----SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHL  356 (873)
T ss_pred             --cccccchhhhhccch---hhhheeecchh----hhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHH
Confidence              356677777777776   4554443 233    2666777777776 6777666  555555555555555 344444


Q ss_pred             CCCCC--CCCcceEEee
Q 039619          325 PDNGL--PTSLLRLEIY  339 (459)
Q Consensus       325 p~~~l--~~sL~~L~i~  339 (459)
                      .+..+  .++|++|+++
T Consensus       357 ~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  357 AEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             HhhHHHHhhhhhhhcCc
Confidence            33222  3444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.58  E-value=2.8e-14  Score=150.61  Aligned_cols=211  Identities=22%  Similarity=0.319  Sum_probs=130.8

Q ss_pred             CCCCcCceEEeCCCCCCCCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceE
Q 039619           87 VSVTLKDPEVLDCPVCYEPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHL  161 (459)
Q Consensus        87 lp~~L~~L~l~~c~~l~~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L  161 (459)
                      +|++|++|+++++    .++.+|     |+.|++.+ +.++.+|   ..+.+|+.|+++++ .++.+|.   .|++|+.|
T Consensus       240 lp~~Lk~LdLs~N----~LtsLP~lp~sL~~L~Ls~-N~L~~Lp---~lp~~L~~L~Ls~N-~Lt~LP~---~p~~L~~L  307 (788)
T PRK15387        240 LPPELRTLEVSGN----QLTSLPVLPPGLLELSIFS-NPLTHLP---ALPSGLCKLWIFGN-QLTSLPV---LPPGLQEL  307 (788)
T ss_pred             CCCCCcEEEecCC----ccCcccCcccccceeeccC-Cchhhhh---hchhhcCEEECcCC-ccccccc---ccccccee
Confidence            3556777777663    344444     67777765 3455665   24456777777663 5666653   23677777


Q ss_pred             EeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccc
Q 039619          162 YIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYK  241 (459)
Q Consensus       162 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~  241 (459)
                      +++++ .+..+|..   ..+|+.|++++| .+..+|..   ..+|+.|++++ ++++.+|.  .+++|+.|++++|.+..
T Consensus       308 dLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~--lp~~L~~L~Ls~N~L~~  376 (788)
T PRK15387        308 SVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSD-NQLASLPT--LPSELYKLWAYNNRLTS  376 (788)
T ss_pred             ECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCC-CccCCCCC--CCcccceehhhcccccc
Confidence            77764 55556542   245666777665 55555531   24677777766 45666664  45677777777766653


Q ss_pred             cccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCC
Q 039619          242 PLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKL  321 (459)
Q Consensus       242 ~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l  321 (459)
                      ..  .      ..++|+.|++++   +.+..+|.       .+++|+.|++++ +.++.+|..  ..+|+.|++++ +++
T Consensus       377 LP--~------l~~~L~~LdLs~---N~Lt~LP~-------l~s~L~~LdLS~-N~LssIP~l--~~~L~~L~Ls~-NqL  434 (788)
T PRK15387        377 LP--A------LPSGLKELIVSG---NRLTSLPV-------LPSELKELMVSG-NRLTSLPML--PSGLLSLSVYR-NQL  434 (788)
T ss_pred             Cc--c------cccccceEEecC---CcccCCCC-------cccCCCEEEccC-CcCCCCCcc--hhhhhhhhhcc-Ccc
Confidence            22  1      235677888877   46666665       446788888887 677777721  24677778877 467


Q ss_pred             CcCCCC-CCCCCcceEEeeCCc
Q 039619          322 QKFPDN-GLPTSLLRLEIYGCP  342 (459)
Q Consensus       322 ~~lp~~-~l~~sL~~L~i~~c~  342 (459)
                      +.+|.. .-+++|+.|++++++
T Consensus       435 t~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        435 TRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cccChHHhhccCCCeEECCCCC
Confidence            777753 125678888888775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.57  E-value=4e-16  Score=153.16  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC-CCCcceEEee
Q 039619          284 PASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL-PTSLLRLEIY  339 (459)
Q Consensus       284 ~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l-~~sL~~L~i~  339 (459)
                      +++|++|++.| |+++.++  .+.++..|++|++.+ +.+.++....+ +..|++|.+.
T Consensus       391 l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  391 LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             chhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence            45666666666 6666666  566666666666655 34555544333 3355555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.56  E-value=4.2e-17  Score=161.00  Aligned_cols=296  Identities=18%  Similarity=0.159  Sum_probs=168.2

Q ss_pred             eEeceeeccCCCCCCCC-CCCC-------CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCccc
Q 039619            5 VRFGLVCGVGGGGGASS-SRFP-------KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTA   76 (459)
Q Consensus         5 ~~~~l~~~~~~~~~~~~-~~f~-------~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~   76 (459)
                      ..-.+|.|++|.|+--. ..||       +++-|.+.... +.... .....+.+|++|++..+.-.+-           
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vP-eEL~~lqkLEHLs~~HN~L~~v-----------   70 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVP-EELSRLQKLEHLSMAHNQLISV-----------   70 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhCh-HHHHHHhhhhhhhhhhhhhHhh-----------
Confidence            34678889998886432 3465       23333332211 11111 1224577888888876643210           


Q ss_pred             CCCCCCCCCCCCCCcCceEEeCCCCCCCCC--ccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCce
Q 039619           77 DPGKRSNNGPVSVTLKDPEVLDCPVCYEPL--TIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLA  146 (459)
Q Consensus        77 ~~~~~~~~~~lp~~L~~L~l~~c~~l~~l~--~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~  146 (459)
                          ......+| .||.+.+...    +++  .+|        |..|+|++ +.++++|......+++-+|++++ +++.
T Consensus        71 ----hGELs~Lp-~LRsv~~R~N----~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~Ie  139 (1255)
T KOG0444|consen   71 ----HGELSDLP-RLRSVIVRDN----NLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIE  139 (1255)
T ss_pred             ----hhhhccch-hhHHHhhhcc----ccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEccc-Cccc
Confidence                01223444 6666666652    222  233        66777766 56777776556666777777776 5677


Q ss_pred             eecc--ccccccccceEEeecccCCccccccCCCCCcccEEeecccc-------------------------CcccCccc
Q 039619          147 FLSL--RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQ-------------------------NLKALPNG  199 (459)
Q Consensus       147 ~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~-------------------------~l~~lp~~  199 (459)
                      .||.  .-++ +-|-.|++++ +.++.+|+.+..+.+|++|.+++++                         -+..+|.+
T Consensus       140 tIPn~lfinL-tDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  140 TIPNSLFINL-TDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             cCCchHHHhh-HhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence            7762  2344 5555666665 3556666555555555555555542                         12234555


Q ss_pred             CCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCC
Q 039619          200 LRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKD  278 (459)
Q Consensus       200 l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~  278 (459)
                      +..+.+|..++++ |+++..+|+. -...+|+.|++++|+++...     -..+...+|++|+++.   +.+..+|... 
T Consensus       218 ld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSr---NQLt~LP~av-  287 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSR---NQLTVLPDAV-  287 (1255)
T ss_pred             hhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeee-----ccHHHHhhhhhhcccc---chhccchHHH-
Confidence            5556666666664 3455555544 22566777777776655321     0223445667777776   5677777655 


Q ss_pred             CCccCCCCcceEEeecCCCC--CccC-CCCCCCCCCEEeccCCCCCCcCCCCCC-CCCcceEEeeCC
Q 039619          279 TGKALPASLKHLSIWNFPNL--ERIS-SIENLTSFESLQLCCCPKLQKFPDNGL-PTSLLRLEIYGC  341 (459)
Q Consensus       279 ~~~~~~~~L~~L~l~~c~~l--~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l-~~sL~~L~i~~c  341 (459)
                         +.+++|+.|.+.+ |++  +-+| +++.+..|+.+...+ ++++-+|+... +..|+.|.++..
T Consensus       288 ---cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  288 ---CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             ---hhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc
Confidence               4667777777766 554  3566 777777777777776 56777776211 566777776544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.55  E-value=6.1e-14  Score=148.10  Aligned_cols=230  Identities=21%  Similarity=0.239  Sum_probs=174.2

Q ss_pred             CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619           24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY  103 (459)
Q Consensus        24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~  103 (459)
                      .++|+.|++.+..- ..+..    ..++|+.|.+.++...                   .+..+|++|++|+++++    
T Consensus       221 ~~~L~~L~L~~N~L-t~LP~----lp~~Lk~LdLs~N~Lt-------------------sLP~lp~sL~~L~Ls~N----  272 (788)
T PRK15387        221 PAHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLT-------------------SLPVLPPGLLELSIFSN----  272 (788)
T ss_pred             hcCCCEEEccCCcC-CCCCC----CCCCCcEEEecCCccC-------------------cccCcccccceeeccCC----
Confidence            34788888876422 22221    3578999998876311                   11235679999999995    


Q ss_pred             CCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCC
Q 039619          104 EPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDD  178 (459)
Q Consensus       104 ~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~  178 (459)
                      .+..+|     |+.|++++ +.++.+|.   .+++|+.|+++++ .+..+|.   +|.+|+.|++++| .++.+|..   
T Consensus       273 ~L~~Lp~lp~~L~~L~Ls~-N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~---lp~~L~~L~Ls~N-~L~~LP~l---  340 (788)
T PRK15387        273 PLTHLPALPSGLCKLWIFG-NQLTSLPV---LPPGLQELSVSDN-QLASLPA---LPSELCKLWAYNN-QLTSLPTL---  340 (788)
T ss_pred             chhhhhhchhhcCEEECcC-Cccccccc---cccccceeECCCC-ccccCCC---CcccccccccccC-cccccccc---
Confidence            455555     99999988 57888883   4679999999984 7888763   4478999999985 67777752   


Q ss_pred             CCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccC
Q 039619          179 NTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVR  258 (459)
Q Consensus       179 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~  258 (459)
                      ..+|+.|+++++ .++.+|..   ..+|+.|++++ +.+..+|.  .+.+|+.|++++|.+....        ...++|+
T Consensus       341 p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~-N~L~~LP~--l~~~L~~LdLs~N~Lt~LP--------~l~s~L~  405 (788)
T PRK15387        341 PSGLQELSVSDN-QLASLPTL---PSELYKLWAYN-NRLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSELK  405 (788)
T ss_pred             ccccceEecCCC-ccCCCCCC---Ccccceehhhc-cccccCcc--cccccceEEecCCcccCCC--------CcccCCC
Confidence            358999999986 77788753   35788899977 46777775  4678999999998887432        1246899


Q ss_pred             EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619          259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP  319 (459)
Q Consensus       259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~  319 (459)
                      .|++++   +.+..+|.       .+.+|+.|++++ |.++.+| .+..+++|+.|++++++
T Consensus       406 ~LdLS~---N~LssIP~-------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        406 ELMVSG---NRLTSLPM-------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             EEEccC---CcCCCCCc-------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence            999999   57888886       456899999999 8999999 88899999999999965

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.44  E-value=2.5e-13  Score=144.16  Aligned_cols=197  Identities=18%  Similarity=0.355  Sum_probs=85.2

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |+.|++++ +.++.+|...  ..+|++|+++++ .++.+|.  .+|++|+.|++++| .+..+|..+.  .+|+.|++++
T Consensus       201 L~~L~Ls~-N~LtsLP~~l--~~nL~~L~Ls~N-~LtsLP~--~l~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        201 ITTLILDN-NELKSLPENL--QGNIKTLYANSN-QLTSIPA--TLPDTIQEMELSIN-RITELPERLP--SALQSLDLFH  271 (754)
T ss_pred             CcEEEecC-CCCCcCChhh--ccCCCEEECCCC-ccccCCh--hhhccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence            55555544 3444554221  235555555542 3444442  12245555555553 3444444332  3455555543


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG  269 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~  269 (459)
                      + .+..+|..+.  ++|+.|++++| +++.+|. .++++|+.|++++|.++..  +.     .-.++|+.|++++   +.
T Consensus       272 N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N~Lt~L--P~-----~l~~sL~~L~Ls~---N~  336 (754)
T PRK15370        272 N-KISCLPENLP--EELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSNSLTAL--PE-----TLPPGLKTLEAGE---NA  336 (754)
T ss_pred             C-ccCccccccC--CCCcEEECCCC-ccccCcc-cchhhHHHHHhcCCccccC--Cc-----cccccceeccccC---Cc
Confidence            3 4444444332  34555555443 3444432 2234455555555444321  11     1123455555544   23


Q ss_pred             ceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619          270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC  341 (459)
Q Consensus       270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c  341 (459)
                      +..+|..      .+++|+.|++++ ++++.+| .+.  ++|++|++++| .+..+|.. ++.+|+.|+++++
T Consensus       337 Lt~LP~~------l~~sL~~L~Ls~-N~L~~LP~~lp--~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N  398 (754)
T PRK15370        337 LTSLPAS------LPPELQVLDVSK-NQITVLPETLP--PTITTLDVSRN-ALTNLPEN-LPAALQIMQASRN  398 (754)
T ss_pred             cccCChh------hcCcccEEECCC-CCCCcCChhhc--CCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccC
Confidence            4444432      234555555554 3444444 221  34555555543 34444431 2334444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.41  E-value=4.5e-13  Score=142.19  Aligned_cols=220  Identities=17%  Similarity=0.294  Sum_probs=170.5

Q ss_pred             CCCCCcCceEEeCCCCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccc
Q 039619           86 PVSVTLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALK  159 (459)
Q Consensus        86 ~lp~~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~  159 (459)
                      .+|++|+.|++++    +.+..+|      |++|++++ +.++.+|.  .++.+|+.|++++| .+..+|.  .+|.+|+
T Consensus       196 ~Ip~~L~~L~Ls~----N~LtsLP~~l~~nL~~L~Ls~-N~LtsLP~--~l~~~L~~L~Ls~N-~L~~LP~--~l~s~L~  265 (754)
T PRK15370        196 CIPEQITTLILDN----NELKSLPENLQGNIKTLYANS-NQLTSIPA--TLPDTIQEMELSIN-RITELPE--RLPSALQ  265 (754)
T ss_pred             ccccCCcEEEecC----CCCCcCChhhccCCCEEECCC-CccccCCh--hhhccccEEECcCC-ccCcCCh--hHhCCCC
Confidence            3677899999999    5677888      99999987 56888884  34568999999995 5778774  3447899


Q ss_pred             eEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcc
Q 039619          160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKI  239 (459)
Q Consensus       160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l  239 (459)
                      .|++++ +.+..+|..+.  ++|+.|++++| .++.+|..+.  ++|+.|++++| .+..+|. ..+++|+.|+++++.+
T Consensus       266 ~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~L  337 (754)
T PRK15370        266 SLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPE-TLPPGLKTLEAGENAL  337 (754)
T ss_pred             EEECcC-CccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCc-cccccceeccccCCcc
Confidence            999986 57888887664  68999999997 7788876543  57999999885 5667764 3568999999999887


Q ss_pred             cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCC
Q 039619          240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCC  318 (459)
Q Consensus       240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c  318 (459)
                      +..  +.   .+  .++|+.|++++   +.+..+|..      .+++|+.|++++ +.+..+| .+.  .+|+.|++++|
T Consensus       338 t~L--P~---~l--~~sL~~L~Ls~---N~L~~LP~~------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        338 TSL--PA---SL--PPELQVLDVSK---NQITVLPET------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASRN  398 (754)
T ss_pred             ccC--Ch---hh--cCcccEEECCC---CCCCcCChh------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhccC
Confidence            642  22   22  37999999999   467778864      457999999999 6888888 543  47999999984


Q ss_pred             CCCCcCCCC-----CCCCCcceEEeeCCch
Q 039619          319 PKLQKFPDN-----GLPTSLLRLEIYGCPL  343 (459)
Q Consensus       319 ~~l~~lp~~-----~l~~sL~~L~i~~c~~  343 (459)
                       ++..+|..     ...+++..|++.+.|-
T Consensus       399 -~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        399 -NLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             -CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence             67788752     1136788999999874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.31  E-value=7.4e-15  Score=138.55  Aligned_cols=228  Identities=20%  Similarity=0.201  Sum_probs=134.2

Q ss_pred             CcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccce
Q 039619           90 TLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKH  160 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~  160 (459)
                      .|.+|++.+    +.+..+|        ++.|+.+. +++..+|+.+....+|++|++++ +.++++|. .+.+ ..|+.
T Consensus        69 ~l~vl~~~~----n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~-~~l~d  141 (565)
T KOG0472|consen   69 CLTVLNVHD----NKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRL-LDLED  141 (565)
T ss_pred             ceeEEEecc----chhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc-cceeecCchHHHH-hhhhh
Confidence            677788877    5677777        77777776 66777777776666888888777 45555552 2344 55666


Q ss_pred             EEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcc
Q 039619          161 LYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKI  239 (459)
Q Consensus       161 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l  239 (459)
                      |+..+ +++.++|+++..+.+|..|++.++ +++.+|+..-.++.|++|+... +.++.+|.. +.+.+|+.|++..|++
T Consensus       142 l~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki  218 (565)
T KOG0472|consen  142 LDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKI  218 (565)
T ss_pred             hhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhccc
Confidence            66555 456666666666666666666664 4445554444456666665533 345555544 5555666666665555


Q ss_pred             cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCC
Q 039619          240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCC  318 (459)
Q Consensus       240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c  318 (459)
                      ....      .|..+..|++|.++.   +.++.+|.+..   ..+++|..|++++ ++++++| ++.-+.+|++||+++ 
T Consensus       219 ~~lP------ef~gcs~L~Elh~g~---N~i~~lpae~~---~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-  284 (565)
T KOG0472|consen  219 RFLP------EFPGCSLLKELHVGE---NQIEMLPAEHL---KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-  284 (565)
T ss_pred             ccCC------CCCccHHHHHHHhcc---cHHHhhHHHHh---cccccceeeeccc-cccccCchHHHHhhhhhhhcccC-
Confidence            5332      455556666666655   45555555431   2455666666666 6666666 555566666666665 


Q ss_pred             CCCCcCCCC-CCCCCcceEEeeCCc
Q 039619          319 PKLQKFPDN-GLPTSLLRLEIYGCP  342 (459)
Q Consensus       319 ~~l~~lp~~-~l~~sL~~L~i~~c~  342 (459)
                      +.+..+|-. |-+ .|+.|.+.|.|
T Consensus       285 N~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  285 NDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             CccccCCcccccc-eeeehhhcCCc
Confidence            455555531 112 45555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=5.6e-14  Score=118.18  Aligned_cols=156  Identities=17%  Similarity=0.289  Sum_probs=95.5

Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEE
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCI  234 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l  234 (459)
                      .++..|.++. +.+..+|..+..+.+|+.|+++++ .++.+|..+..++.|+.|++. .+++..+|.+ +.++-|+.|++
T Consensus        33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhc
Confidence            3444445544 344445555555555555555543 445555555555555555552 3344444433 34455555555


Q ss_pred             ecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEE
Q 039619          235 DYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESL  313 (459)
Q Consensus       235 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L  313 (459)
                      ..+++.....|.   .+..++.|+.|.+++   +..+.+|.+.|    .+++|+.|.+++ +.+-++| .++.++.|++|
T Consensus       110 tynnl~e~~lpg---nff~m~tlralyl~d---ndfe~lp~dvg----~lt~lqil~lrd-ndll~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  110 TYNNLNENSLPG---NFFYMTTLRALYLGD---NDFEILPPDVG----KLTNLQILSLRD-NDLLSLPKEIGDLTRLREL  178 (264)
T ss_pred             cccccccccCCc---chhHHHHHHHHHhcC---CCcccCChhhh----hhcceeEEeecc-CchhhCcHHHHHHHHHHHH
Confidence            554443222122   455677788888887   67888888775    788888888888 7888888 88888999999


Q ss_pred             eccCCCCCCcCCC
Q 039619          314 QLCCCPKLQKFPD  326 (459)
Q Consensus       314 ~l~~c~~l~~lp~  326 (459)
                      .|.+ ++++.+|.
T Consensus       179 hiqg-nrl~vlpp  190 (264)
T KOG0617|consen  179 HIQG-NRLTVLPP  190 (264)
T ss_pred             hccc-ceeeecCh
Confidence            9988 56666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.27  E-value=3.9e-14  Score=133.72  Aligned_cols=207  Identities=22%  Similarity=0.229  Sum_probs=169.7

Q ss_pred             CcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccce
Q 039619           90 TLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKH  160 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~  160 (459)
                      .++.|+.+.    +++..+|        |+.|+++. +.+..+++.++-+..|..++..+ +++..+|.. +.+ .+|..
T Consensus        92 ~l~~l~vs~----n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~-~~l~~  164 (565)
T KOG0472|consen   92 ALKSLNVSH----NKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNL-SKLSK  164 (565)
T ss_pred             HHHHhhccc----chHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccc-cccccCchHHHHH-HHHHH
Confidence            467778887    6777887        88888877 67778887777777888888877 677777733 455 78888


Q ss_pred             EEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCccc
Q 039619          161 LYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIY  240 (459)
Q Consensus       161 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~  240 (459)
                      |++.+ +.++.+|+..-+++.|++|+...+ .++.+|..++.+.+|+.|++.. +++..+|+.+-++.|++|++..|.++
T Consensus       165 l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  165 LDLEG-NKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             hhccc-cchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHH
Confidence            88888 577888777667999999998664 7889999999999999999987 57888887667888999999888776


Q ss_pred             ccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619          241 KPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP  319 (459)
Q Consensus       241 ~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~  319 (459)
                      -.. .+   .+.++++|..|++.+   ++++++|.+.    ..+.+|++|++++ +.+..+| +++++ .|+.|.+.|+|
T Consensus       242 ~lp-ae---~~~~L~~l~vLDLRd---Nklke~Pde~----clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  242 MLP-AE---HLKHLNSLLVLDLRD---NKLKEVPDEI----CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hhH-HH---Hhcccccceeeeccc---cccccCchHH----HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence            433 33   567899999999998   7999999987    5788999999999 9999999 99998 89999998854

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.19  E-value=6e-13  Score=137.55  Aligned_cols=215  Identities=23%  Similarity=0.307  Sum_probs=106.7

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  188 (459)
                      |++++++. +.+..+|++..-+.+|+.+++.+ +.+..+|.. ... .+|+.|.+..| .++.+|+....+++|++|++.
T Consensus       243 l~~~dis~-n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~-~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  243 LQYLDISH-NNLSNLPEWIGACANLEALNANH-NRLVALPLRISRI-TSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ceeeecch-hhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhh-hhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence            66666655 55566665555556666666655 445555522 223 55566665553 455566555556666666665


Q ss_pred             cccCcccCcccCC--------------------------CCCCccEEeeccCCCCc--cccCCCCCCCccEEEEecCccc
Q 039619          189 ICQNLKALPNGLR--------------------------NLTSLQYLLIQDCPTIG--SFTANCFPTNLASVCIDYEKIY  240 (459)
Q Consensus       189 ~c~~l~~lp~~l~--------------------------~l~~L~~L~l~~c~~l~--~lp~~~~~~~L~~L~l~~~~l~  240 (459)
                      .+ ++..+|+.+-                          .+..|+.|.+.++ .++  .+|......+|+.|++++|.+.
T Consensus       319 ~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  319 SN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhhhccccceeeeeecccccc
Confidence            54 4444544221                          1222333333331 111  1222222344555555554443


Q ss_pred             ccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCC
Q 039619          241 KPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPK  320 (459)
Q Consensus       241 ~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~  320 (459)
                      ... ..   .+.++..|++|+++|   +.++.+|...    ..+..|++|...+ |.+..+|.+..++.|+.+|++ |++
T Consensus       397 ~fp-as---~~~kle~LeeL~LSG---NkL~~Lp~tv----a~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~  463 (1081)
T KOG0618|consen  397 SFP-AS---KLRKLEELEELNLSG---NKLTTLPDTV----ANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNN  463 (1081)
T ss_pred             cCC-HH---HHhchHHhHHHhccc---chhhhhhHHH----HhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cch
Confidence            111 11   334444455555555   3444444433    2344445544444 455555555566677777775 355


Q ss_pred             CCcCCC-CCCC-CCcceEEeeCCch
Q 039619          321 LQKFPD-NGLP-TSLLRLEIYGCPL  343 (459)
Q Consensus       321 l~~lp~-~~l~-~sL~~L~i~~c~~  343 (459)
                      ++.+-- ...| ++|++|+++|.+.
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCCcc
Confidence            655432 2345 6777777777763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.19  E-value=8.8e-13  Score=136.34  Aligned_cols=220  Identities=20%  Similarity=0.256  Sum_probs=157.1

Q ss_pred             ccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccE
Q 039619          130 LPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQY  208 (459)
Q Consensus       130 ~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  208 (459)
                      .+.+|++++++. +++..+|.+ +.+ .+|+.+++.. +.+..+|..+....+|+.|.+..| .++.+|.....+++|++
T Consensus       239 ~p~nl~~~dis~-n~l~~lp~wi~~~-~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  239 VPLNLQYLDISH-NNLSNLPEWIGAC-ANLEALNANH-NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRT  314 (1081)
T ss_pred             ccccceeeecch-hhhhcchHHHHhc-ccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeee
Confidence            445777777766 466666622 445 6777777766 456777777777777777777776 67788888888999999


Q ss_pred             EeeccCCCCccccCCC---------------------------CCCCccEEEEecCcccccccccCCCCCCCCCccCEEE
Q 039619          209 LLIQDCPTIGSFTANC---------------------------FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLT  261 (459)
Q Consensus       209 L~l~~c~~l~~lp~~~---------------------------~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~  261 (459)
                      |++.. +++..+|+..                           ..+.|+.|++.+|.+++.. -.   .+.++.+|+.|+
T Consensus       315 LdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-~p---~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  315 LDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-FP---VLVNFKHLKVLH  389 (1081)
T ss_pred             eeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-hh---hhccccceeeee
Confidence            99976 4555555421                           1235666667777776654 22   567889999999


Q ss_pred             EeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeC
Q 039619          262 LFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYG  340 (459)
Q Consensus       262 l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~  340 (459)
                      +++   +.+.+||...   ...+..|++|+++| |+++.+| .+..+..|++|...+ +++..+|+...++.|+.+|++ 
T Consensus       390 Lsy---NrL~~fpas~---~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-  460 (1081)
T KOG0618|consen  390 LSY---NRLNSFPASK---LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-  460 (1081)
T ss_pred             ecc---cccccCCHHH---HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-
Confidence            998   6899999864   13567899999999 9999999 889999999999977 688999976568999999996 


Q ss_pred             CchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619          341 CPLIEERFEKDKGQYWSLIADIPCVRIDCHY  371 (459)
Q Consensus       341 c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~  371 (459)
                      |..|...... ....|+   ++.++.+.+..
T Consensus       461 ~N~L~~~~l~-~~~p~p---~LkyLdlSGN~  487 (1081)
T KOG0618|consen  461 CNNLSEVTLP-EALPSP---NLKYLDLSGNT  487 (1081)
T ss_pred             cchhhhhhhh-hhCCCc---ccceeeccCCc
Confidence            5555554332 122343   44556665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.14  E-value=8.7e-13  Score=111.08  Aligned_cols=154  Identities=18%  Similarity=0.298  Sum_probs=109.3

Q ss_pred             ccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEe
Q 039619          132 ATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL  210 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  210 (459)
                      .+...|.+++ ++++.+|. ...+ .+|+.|++.+ +.++++|.++..+++|+.|++.- +.+..+|.+++.++.|+.|+
T Consensus        33 s~ITrLtLSH-NKl~~vppnia~l-~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVVPPNIAEL-KNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhccc-CceeecCCcHHHh-hhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence            4556666666 45555552 2445 6777777776 46777777777778888887764 36667777888888888888


Q ss_pred             eccCCCC-ccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcc
Q 039619          211 IQDCPTI-GSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK  288 (459)
Q Consensus       211 l~~c~~l-~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~  288 (459)
                      +.+.+.- ..+|.. ..++.|+-|+++++.++-.  |.   .++++++|+.|.+.+   +++-++|.+++    .+..|+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~l--p~---dvg~lt~lqil~lrd---ndll~lpkeig----~lt~lr  176 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL--PP---DVGKLTNLQILSLRD---NDLLSLPKEIG----DLTRLR  176 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccC--Ch---hhhhhcceeEEeecc---CchhhCcHHHH----HHHHHH
Confidence            7664322 345544 2366777777777666532  22   678999999999998   68888998875    788999


Q ss_pred             eEEeecCCCCCccC
Q 039619          289 HLSIWNFPNLERIS  302 (459)
Q Consensus       289 ~L~l~~c~~l~~l~  302 (459)
                      +|.+.+ +.++.+|
T Consensus       177 elhiqg-nrl~vlp  189 (264)
T KOG0617|consen  177 ELHIQG-NRLTVLP  189 (264)
T ss_pred             HHhccc-ceeeecC
Confidence            999999 8898888

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.89  E-value=1.3e-08  Score=99.59  Aligned_cols=90  Identities=24%  Similarity=0.502  Sum_probs=62.1

Q ss_pred             ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619          132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI  211 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  211 (459)
                      .+++.|++++| .++.+|   .+|++|++|.+++|..++.+|..+  .++|+.|++++|..+..+|.      +|+.|.+
T Consensus        52 ~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L  119 (426)
T PRK15386         52 RASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEI  119 (426)
T ss_pred             cCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEe
Confidence            57888888887 788887   466788888888888888887655  36788888888877776664      3555666


Q ss_pred             ccCCCCccccCCCCCCCccEEEEec
Q 039619          212 QDCPTIGSFTANCFPTNLASVCIDY  236 (459)
Q Consensus       212 ~~c~~l~~lp~~~~~~~L~~L~l~~  236 (459)
                      . +.....++  .+|++|+.|.+.+
T Consensus       120 ~-~n~~~~L~--~LPssLk~L~I~~  141 (426)
T PRK15386        120 K-GSATDSIK--NVPNGLTSLSINS  141 (426)
T ss_pred             C-CCCCcccc--cCcchHhheeccc
Confidence            4 23332222  3456677776644

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=2.1e-09  Score=116.31  Aligned_cols=226  Identities=19%  Similarity=0.235  Sum_probs=145.6

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCC-ceeecc--ccccccccceEEeecccCCccccccCCCCCcccEEe
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSK-LAFLSL--RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETME  186 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~-l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  186 (459)
                      .+...+.+ +.+..++.....+ .|++|-+.+... +..++.  ...+ +.|+.|++++|..+..+|..++.+-+|++|+
T Consensus       525 ~rr~s~~~-~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  525 VRRMSLMN-NKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             eeEEEEec-cchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            55555543 4555555333333 788888777442 555553  4567 8888888888888888888888888888888


Q ss_pred             eccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCc--ccccccccCCCCCCCCCccCEEEEe
Q 039619          187 IFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEK--IYKPLILERGPGLHRFTSVRLLTLF  263 (459)
Q Consensus       187 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~--l~~~~~~~~~~~l~~l~~L~~L~l~  263 (459)
                      ++++ .+..+|.+++++..|.+|++.....+..++.. ..+++|++|.+....  ..... ..   .+.++.+|+.+.+.
T Consensus       602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~-l~---el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLL-LK---ELENLEHLENLSIT  676 (889)
T ss_pred             ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhh-HH---hhhcccchhhheee
Confidence            8876 67788888888888888888877776666555 337888888887722  11111 11   34556666666665


Q ss_pred             CCcCCC-------------------------ceecCCCCCCCccCCCCcceEEeecCCCCCccC----C--CCC-CCCCC
Q 039619          264 GGECCG-------------------------VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS----S--IEN-LTSFE  311 (459)
Q Consensus       264 ~~~c~~-------------------------l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~--l~~-l~~L~  311 (459)
                      ..  ..                         ....+...    ..+.+|+.|.+.+|...+...    .  ... ++++.
T Consensus       677 ~~--s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~----~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~  750 (889)
T KOG4658|consen  677 IS--SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSL----GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS  750 (889)
T ss_pred             cc--hhHhHhhhhhhHHHHHHhHhhhhcccccceeeccc----ccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence            41  11                         01111111    256678888888876543221    1  111 45677


Q ss_pred             EEeccCCCCCCcCCCCCCCCCcceEEeeCCchhHHhhh
Q 039619          312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFE  349 (459)
Q Consensus       312 ~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~~~~~  349 (459)
                      .+.+.+|..++.+....++++|+.|.+..|+.++....
T Consensus       751 ~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  751 KVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             HHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence            77777777777766555688999999999887776544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.83  E-value=7.3e-11  Score=112.52  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             CCCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCCCCCcCCCCC------CCCCcceEEeeCCchhHHhhhcCcCC
Q 039619          284 PASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCPKLQKFPDNG------LPTSLLRLEIYGCPLIEERFEKDKGQ  354 (459)
Q Consensus       284 ~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~lp~~~------l~~sL~~L~i~~c~~L~~~~~~~~~~  354 (459)
                      .+.|+.+++.+|..+..-.   --.+++.|+.|.+++|..+++-....      -...|..+.+++||.+++....    
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le----  420 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE----  420 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH----
Confidence            3456666655554433221   22345666666666665554431100      1345666666666666554322    


Q ss_pred             ccccccCCCeEEeCceeeeCHHHHhhhh
Q 039619          355 YWSLIADIPCVRIDCHYVIDPKAQRQLI  382 (459)
Q Consensus       355 ~~~~i~~i~~l~~~~~~~l~~~~~~~~~  382 (459)
                      +..+...+++|...+|.....++.+.+.
T Consensus       421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  421 HLSICRNLERIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             HHhhCcccceeeeechhhhhhhhhHHHH
Confidence            2222334555666666666555544443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.80  E-value=1.3e-10  Score=110.90  Aligned_cols=151  Identities=17%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             CCCccEEeeccCCCCccccCC---CCCCCccEEEEec-CcccccccccCCCCC-CCCCccCEEEEeCCcCCCcee--cCC
Q 039619          203 LTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCIDY-EKIYKPLILERGPGL-HRFTSVRLLTLFGGECCGVVS--FPP  275 (459)
Q Consensus       203 l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~-~~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~c~~l~~--l~~  275 (459)
                      +..|+.|+.++|..+...+..   ....+|+.|.+.+ .++++.. ..   .+ .+.+.|+.+++.+  |.....  +..
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~-ft---~l~rn~~~Le~l~~e~--~~~~~d~tL~s  366 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG-FT---MLGRNCPHLERLDLEE--CGLITDGTLAS  366 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh-hh---hhhcCChhhhhhcccc--cceehhhhHhh
Confidence            556666777666665544432   2356777777766 4343221 00   11 2456677777776  433211  111


Q ss_pred             CCCCCccCCCCcceEEeecCCCCCccC------CCCCCCCCCEEeccCCCCCCcCCCCC--CCCCcceEEeeCCchhHHh
Q 039619          276 EKDTGKALPASLKHLSIWNFPNLERIS------SIENLTSFESLQLCCCPKLQKFPDNG--LPTSLLRLEIYGCPLIEER  347 (459)
Q Consensus       276 ~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c~~l~~lp~~~--l~~sL~~L~i~~c~~L~~~  347 (459)
                      -.    ...+.|+.|.++.|..+++..      .-.++..|+.+.+++|+.+.+-..+.  ..++|+.+++.+|....+.
T Consensus       367 ls----~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  367 LS----RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             hc----cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence            11    145678888888777766552      33456677888888887765432211  2567788888887655543


Q ss_pred             hhcCcCCccccccCCCeEEeCc
Q 039619          348 FEKDKGQYWSLIADIPCVRIDC  369 (459)
Q Consensus       348 ~~~~~~~~~~~i~~i~~l~~~~  369 (459)
                      -..      +-.+|.|++++..
T Consensus       443 ~i~------~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  443 AIS------RFATHLPNIKVHA  458 (483)
T ss_pred             hhH------HHHhhCccceehh
Confidence            221      2234667666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.75  E-value=3.9e-08  Score=96.29  Aligned_cols=55  Identities=24%  Similarity=0.387  Sum_probs=24.6

Q ss_pred             CcCceEEeCCCCCCCCCccc--eeEEEEecCCCCccccCCccccccCcEEEeecCCCcee
Q 039619           90 TLKDPEVLDCPVCYEPLTIP--VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAF  147 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp--L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~  147 (459)
                      ++++|++++| .+..+..+|  |++|.+.+|..++.+|.  .++.+|++|++++|..+..
T Consensus        53 ~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         53 ASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISG  109 (426)
T ss_pred             CCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccc
Confidence            4555555554 222222333  55555555555544442  1234455555555444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.65  E-value=1.1e-09  Score=103.95  Aligned_cols=239  Identities=17%  Similarity=0.215  Sum_probs=145.6

Q ss_pred             CCCCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeecc--cc
Q 039619           85 GPVSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLSL--RG  152 (459)
Q Consensus        85 ~~lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~~--~~  152 (459)
                      ..+|+.-..+.++.    +.++.+|         |++|+|++ +.++.+.+.. .-+.+|..|.+.+.++++++|.  .+
T Consensus        63 ~~LP~~tveirLdq----N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   63 ANLPPETVEIRLDQ----NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             ccCCCcceEEEecc----CCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            46777888888888    6788887         88888887 6676664221 2234677777777678888883  35


Q ss_pred             ccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCC-----c-------
Q 039619          153 NLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTI-----G-------  218 (459)
Q Consensus       153 ~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l-----~-------  218 (459)
                      .+ .+|+.|.+.-+ .+..+ .+.+..+++|..|.+.++ .+..++. .+..+.+++.+.+...+.+     .       
T Consensus       138 gL-~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  138 GL-SSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             hH-HHHHHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence            56 66666666543 23333 234556677777777664 5555554 4556666666666543311     0       


Q ss_pred             -----------------------cccCCCCCCCccEE--EEec-CcccccccccCCCCCCCCCccCEEEEeCCcCCCcee
Q 039619          219 -----------------------SFTANCFPTNLASV--CIDY-EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS  272 (459)
Q Consensus       219 -----------------------~lp~~~~~~~L~~L--~l~~-~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~  272 (459)
                                             .++...+.-.++.+  .+.. .....+. |.  -.+..+++|++|++++   +.++.
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c-P~--~cf~~L~~L~~lnlsn---N~i~~  288 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC-PA--KCFKKLPNLRKLNLSN---NKITR  288 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC-hH--HHHhhcccceEeccCC---Cccch
Confidence                                   00000011111111  1111 1111111 11  1467788999999988   57777


Q ss_pred             cCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          273 FPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       273 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      +..++   +.....+++|.+.+ |+++.+.  .+.++..|++|++.+ ++++.+....+  ..+|.+|.+-..|
T Consensus       289 i~~~a---Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  289 IEDGA---FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhhh---hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence            66543   12467888888888 8888887  678888999999988 57777765444  4677777776544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.54  E-value=1.7e-08  Score=92.61  Aligned_cols=123  Identities=17%  Similarity=0.235  Sum_probs=84.8

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |++|++++ +.++.+.+++.+.+.++.|++++ +.+..+.....+ ++|+.|++++ +.+.++...-..+.|+++|.+++
T Consensus       286 LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L-~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAEL-PQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccc-cchhhhhhhhhhccceeEEeccc-cceeeehhhhhc-ccceEeeccc-chhHhhhhhHhhhcCEeeeehhh
Confidence            88888877 67888887777888888888887 466665544556 7888888877 34555433334566777787777


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      + .++.+ ++++++-+|..|++++ ++++.+..                      ..   +++++|.|+.+.+.+
T Consensus       362 N-~iE~L-SGL~KLYSLvnLDl~~-N~Ie~lde----------------------V~---~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  362 N-KIETL-SGLRKLYSLVNLDLSS-NQIEELDE----------------------VN---HIGNLPCLETLRLTG  408 (490)
T ss_pred             h-hHhhh-hhhHhhhhheeccccc-cchhhHHH----------------------hc---ccccccHHHHHhhcC
Confidence            5 56665 4667777777777766 34444432                      11   678888888888887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.51  E-value=5.4e-08  Score=105.51  Aligned_cols=81  Identities=26%  Similarity=0.243  Sum_probs=48.8

Q ss_pred             ccc-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccE
Q 039619          107 TIP-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLET  184 (459)
Q Consensus       107 ~lp-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  184 (459)
                      .+| |++||+++|..+..+|..++.+-+||+|++++ ..+..+|.. ++| ..|.+|++.....+..+|.....+++|++
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNL-KKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHH-HhhheeccccccccccccchhhhcccccE
Confidence            344 66666666666666666666555666666666 356666633 455 66666666665555555444444666666


Q ss_pred             Eeecc
Q 039619          185 MEIFI  189 (459)
Q Consensus       185 L~l~~  189 (459)
                      |.+..
T Consensus       647 L~l~~  651 (889)
T KOG4658|consen  647 LRLPR  651 (889)
T ss_pred             EEeec
Confidence            66654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.49  E-value=4.4e-09  Score=99.80  Aligned_cols=221  Identities=16%  Similarity=0.230  Sum_probs=112.9

Q ss_pred             eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccccc-CCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L  185 (459)
                      -+.++|.. +.++.+|+.. +-+++|+.|+|++ +++..|.  ....+ ++|-+|.+.+.+.++++|.+ ++.+..|+.|
T Consensus        69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             ceEEEecc-CCcccCChhhccchhhhceecccc-cchhhcChHhhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            56666655 5677776433 3335677777766 4566554  12345 55666666665666666543 4556666666


Q ss_pred             eeccccCcccC-cccCCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEecCcc-ccccccc--------CCCCCCC
Q 039619          186 EIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDYEKI-YKPLILE--------RGPGLHR  253 (459)
Q Consensus       186 ~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~l-~~~~~~~--------~~~~l~~  253 (459)
                      .+.-+ .+.-+ ...+..+++|..|.+.+ +.++.++...+  ..+++.+.+..+.+ .+.- ..        ....++.
T Consensus       146 llNan-~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCn-L~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  146 LLNAN-HINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCN-LPWLADDLAMNPIETSG  222 (498)
T ss_pred             hcChh-hhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccc-cchhhhHHhhchhhccc
Confidence            55443 22222 23445566666666665 34455544322  44555555443221 0000 00        0000011


Q ss_pred             CCc----------------------cCEE--EEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC
Q 039619          254 FTS----------------------VRLL--TLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL  307 (459)
Q Consensus       254 l~~----------------------L~~L--~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l  307 (459)
                      ...                      ++.+  .+... |......|...   ...+++|++|++++ |.++.+.  ++..+
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~-d~~d~~cP~~c---f~~L~~L~~lnlsn-N~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE-DFPDSICPAKC---FKKLPNLRKLNLSN-NKITRIEDGAFEGA  297 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc-cCcCCcChHHH---HhhcccceEeccCC-Cccchhhhhhhcch
Confidence            000                      0000  00000 11111111100   01457888888888 8888887  77888


Q ss_pred             CCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          308 TSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       308 ~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      ..+++|.+.. ++++.+....+  +..|+.|++++..
T Consensus       298 a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  298 AELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             hhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCe
Confidence            8888888877 56777665333  5788888888763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.45  E-value=7.6e-09  Score=100.63  Aligned_cols=11  Identities=18%  Similarity=0.138  Sum_probs=5.1

Q ss_pred             cccceEEeecc
Q 039619          156 KALKHLYIISC  166 (459)
Q Consensus       156 ~~L~~L~l~~c  166 (459)
                      ++|++|++++|
T Consensus        81 ~~L~~L~l~~~   91 (319)
T cd00116          81 CGLQELDLSDN   91 (319)
T ss_pred             CceeEEEccCC
Confidence            34444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.42  E-value=8.6e-08  Score=93.20  Aligned_cols=130  Identities=19%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             cccCcEEEeecCCCceeec-cccccc--cccceEEeecccCC----ccccccCCCC-CcccEEeeccccCc----ccCcc
Q 039619          131 PATLENIYVDRCSKLAFLS-LRGNLS--KALKHLYIISCSNL----ESIAEGLDDN-TSLETMEIFICQNL----KALPN  198 (459)
Q Consensus       131 ~~~L~~L~l~~c~~l~~l~-~~~~lp--~~L~~L~l~~c~~l----~~lp~~l~~l-~~L~~L~l~~c~~l----~~lp~  198 (459)
                      .++|++|++++|..-...+ ....++  ++|++|++++|..-    ..+...+..+ ++|+.|++++|.-.    ..++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            4588888888865432222 112220  23888888876422    1223334455 78888888887422    12333


Q ss_pred             cCCCCCCccEEeeccCCCCcc-----ccCC-CCCCCccEEEEecCcccccc---cccCCCCCCCCCccCEEEEeC
Q 039619          199 GLRNLTSLQYLLIQDCPTIGS-----FTAN-CFPTNLASVCIDYEKIYKPL---ILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       199 ~l~~l~~L~~L~l~~c~~l~~-----lp~~-~~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      .+..+++|++|++++|. +..     ++.. ...++|++|+++++.+....   ...   .+..+++|++|++++
T Consensus       160 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---~~~~~~~L~~L~ls~  230 (319)
T cd00116         160 ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE---TLASLKSLEVLNLGD  230 (319)
T ss_pred             HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH---HhcccCCCCEEecCC
Confidence            44566778888887754 221     1100 11246666666664443211   011   234556666666666

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.41  E-value=7.5e-09  Score=102.53  Aligned_cols=185  Identities=19%  Similarity=0.230  Sum_probs=79.5

Q ss_pred             EEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccEEeecccc
Q 039619          113 LQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQ  191 (459)
Q Consensus       113 L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  191 (459)
                      .+++. +.+..+|.....+..|+.+.+.. +.+..+|.. .++ ..|..|+++. +.+..+|..++.|+ |+.|.++++ 
T Consensus        80 aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L-~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN-  153 (722)
T KOG0532|consen   80 ADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNL-EALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN-  153 (722)
T ss_pred             hhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhh-hHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC-
Confidence            34433 34444444443333444444433 233344321 233 4444444444 23444444444432 444544443 


Q ss_pred             CcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCc
Q 039619          192 NLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGV  270 (459)
Q Consensus       192 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l  270 (459)
                      +++.+|..++.+..|..|+.+.| .+..+|.. +.+.+|+.|.+..|++....  +   .+. .-.|..|+++   |+++
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp--~---El~-~LpLi~lDfS---cNki  223 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLP--E---ELC-SLPLIRLDFS---CNKI  223 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCC--H---HHh-CCceeeeecc---cCce
Confidence            44455555554455555555433 23333321 22333333333333222111  1   122 1134445554   3566


Q ss_pred             eecCCCCCCCccCCCCcceEEeecCCCCCccC----CCCCCCCCCEEeccCC
Q 039619          271 VSFPPEKDTGKALPASLKHLSIWNFPNLERIS----SIENLTSFESLQLCCC  318 (459)
Q Consensus       271 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~l~~l~~L~~L~l~~c  318 (459)
                      ..+|..+    ..+..|++|.|.+ |-+++=|    ..+...-.++|++.-|
T Consensus       224 s~iPv~f----r~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  224 SYLPVDF----RKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eecchhh----hhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence            6666555    3555666666654 5555544    2233334455555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.40  E-value=2.1e-07  Score=93.51  Aligned_cols=172  Identities=21%  Similarity=0.268  Sum_probs=115.2

Q ss_pred             ccCcEEEeecCCCceeecccccccc-ccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEe
Q 039619          132 ATLENIYVDRCSKLAFLSLRGNLSK-ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL  210 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~~~~lp~-~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  210 (459)
                      +.++.|++.+ ..+.+++....+.. +|+.|++++ ..+..+|..+..+++|+.|+++++ .+..+|...+.++.|+.|+
T Consensus       116 ~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence            4667777765 56666664433313 677777776 466777666777788888888776 5666666555777788888


Q ss_pred             eccCCCCccccCC-CCCCCccEEEEecC-cccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcc
Q 039619          211 IQDCPTIGSFTAN-CFPTNLASVCIDYE-KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK  288 (459)
Q Consensus       211 l~~c~~l~~lp~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~  288 (459)
                      +++ +.+..+|.. ..+..|++|.++++ .+..+.      .+.++.++..+.+.+   +.+..++...    ..+++++
T Consensus       193 ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~------~~~~~~~l~~l~l~~---n~~~~~~~~~----~~l~~l~  258 (394)
T COG4886         193 LSG-NKISDLPPEIELLSALEELDLSNNSIIELLS------SLSNLKNLSGLELSN---NKLEDLPESI----GNLSNLE  258 (394)
T ss_pred             ccC-CccccCchhhhhhhhhhhhhhcCCcceecch------hhhhcccccccccCC---ceeeeccchh----ccccccc
Confidence            876 456677765 45666888888776 344333      456777777777655   4555544443    2566788


Q ss_pred             eEEeecCCCCCccCCCCCCCCCCEEeccCCCCC
Q 039619          289 HLSIWNFPNLERISSIENLTSFESLQLCCCPKL  321 (459)
Q Consensus       289 ~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l  321 (459)
                      .|++++ +.+.+++.+..+.+++.|++++....
T Consensus       259 ~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         259 TLDLSN-NQISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             eecccc-ccccccccccccCccCEEeccCcccc
Confidence            888887 77777777777788888888874433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.31  E-value=1.1e-07  Score=87.55  Aligned_cols=126  Identities=18%  Similarity=0.238  Sum_probs=95.7

Q ss_pred             CCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCC
Q 039619          201 RNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDT  279 (459)
Q Consensus       201 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~  279 (459)
                      ...+.|++|++++ +.++.+.+. .+.+.++.|+++.|.+....      .++.+++|+.|++++   +.+..+....  
T Consensus       281 dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~---N~Ls~~~Gwh--  348 (490)
T KOG1259|consen  281 DTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSG---NLLAECVGWH--  348 (490)
T ss_pred             chHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeeccc---chhHhhhhhH--
Confidence            3456788999987 456777655 56889999999998887554      678889999999998   5666555433  


Q ss_pred             CccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCC---CCCCCCCcceEEeeCCc
Q 039619          280 GKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFP---DNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       280 ~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp---~~~l~~sL~~L~i~~c~  342 (459)
                        ..+-+++.|.+++ |.++++.+++.+-+|..|++++ ++++.+.   ..|-+|.|+++.+.+.|
T Consensus       349 --~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  349 --LKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             --hhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence              2567889999998 8888888888889999999988 4555544   33447888888888876

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=2.1e-07  Score=89.72  Aligned_cols=199  Identities=13%  Similarity=0.117  Sum_probs=116.0

Q ss_pred             eeEEEEecCCCCccccC--CccccccCcEEEeecCCCceeec----cccccccccceEEeecccCCccccc--cCCCCCc
Q 039619          110 VYQLQIIPCPSLTSLWS--KSELPATLENIYVDRCSKLAFLS----LRGNLSKALKHLYIISCSNLESIAE--GLDDNTS  181 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~--~~~~~~~L~~L~l~~c~~l~~l~----~~~~lp~~L~~L~l~~c~~l~~lp~--~l~~l~~  181 (459)
                      |++..+.+| .....+.  ....+++++.|++++. -+..+.    +...| |+|+.|+++.+ .+....+  .-..+++
T Consensus       123 L~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqL-p~Le~LNls~N-rl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  123 LREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQL-PSLENLNLSSN-RLSNFISSNTTLLLSH  198 (505)
T ss_pred             hhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhc-ccchhcccccc-cccCCccccchhhhhh
Confidence            556666553 2322221  2344568888888772 232221    33567 88888888874 3332211  1124688


Q ss_pred             ccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCcccc-CCCCCCCccEEEEecCcccccccccCCCCCCCCCccC
Q 039619          182 LETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGSFT-ANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVR  258 (459)
Q Consensus       182 L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~  258 (459)
                      |+.|.+++| .+.  .+-..+..+++|+.|.+..+..+.... ....+..|++|+|++|++.+..   +....+.++.|+
T Consensus       199 lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~  274 (505)
T KOG3207|consen  199 LKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD---QGYKVGTLPGLN  274 (505)
T ss_pred             hheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---cccccccccchh
Confidence            889999888 333  121223467889999998764332221 2255788999999995554321   012567889999


Q ss_pred             EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---CCCCCCCCCEEeccC
Q 039619          259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---SIENLTSFESLQLCC  317 (459)
Q Consensus       259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~  317 (459)
                      .|+++.++-..+...+.+.......+++|++|++.. |++.+++   .+..+++|+.|.+..
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence            999988211122222221111112567999999998 7887777   555667777777643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.20  E-value=1e-06  Score=88.60  Aligned_cols=174  Identities=17%  Similarity=0.205  Sum_probs=131.9

Q ss_pred             eeEEEEecCCCCccccCCccccc-cCcEEEeecCCCceeec-cccccccccceEEeecccCCccccccCCCCCcccEEee
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPA-TLENIYVDRCSKLAFLS-LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEI  187 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~-~L~~L~l~~c~~l~~l~-~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  187 (459)
                      ++.|++.+ ..+++++....... +|+.|++++ +.+..+| ..+.+ ++|+.|+++++ .+.++|...+.+++|+.|++
T Consensus       118 l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l-~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         118 LTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNL-PNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             eeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhcc-ccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence            78888865 78888887777774 999999988 6788875 33566 99999999985 78888877667899999999


Q ss_pred             ccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcC
Q 039619          188 FICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGEC  267 (459)
Q Consensus       188 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c  267 (459)
                      +++ .+..+|..+..+..|++|.+.+...+..........++..+.+.++++....  .   .++.+++++.|++++   
T Consensus       194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~--~---~~~~l~~l~~L~~s~---  264 (394)
T COG4886         194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP--E---SIGNLSNLETLDLSN---  264 (394)
T ss_pred             cCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc--c---hhccccccceecccc---
Confidence            997 7888887666677799999987644433333355677777877777765411  1   568889999999998   


Q ss_pred             CCceecCCCCCCCccCCCCcceEEeecCCCCCccC
Q 039619          268 CGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS  302 (459)
Q Consensus       268 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  302 (459)
                      +.+..++...     ...+++.|++++ +.+..++
T Consensus       265 n~i~~i~~~~-----~~~~l~~L~~s~-n~~~~~~  293 (394)
T COG4886         265 NQISSISSLG-----SLTNLRELDLSG-NSLSNAL  293 (394)
T ss_pred             cccccccccc-----ccCccCEEeccC-ccccccc
Confidence            5777777632     678999999998 5554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.14  E-value=1e-06  Score=77.07  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=10.3

Q ss_pred             CCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCC
Q 039619          285 ASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCP  319 (459)
Q Consensus       285 ~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~  319 (459)
                      ++|++|.+++ |++.++.   .+..+++|+.|++.++|
T Consensus        88 p~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   88 PNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             CcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence            3444444444 4444333   33344555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.11  E-value=1.9e-06  Score=75.46  Aligned_cols=129  Identities=19%  Similarity=0.234  Sum_probs=47.3

Q ss_pred             CCCccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-C
Q 039619          226 PTNLASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-S  303 (459)
Q Consensus       226 ~~~L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~  303 (459)
                      +..+++|++.++.++..-      .++ .+.+|+.|++++   +.+..+..-.     .++.|+.|++++ |.++++. .
T Consensus        18 ~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~---N~I~~l~~l~-----~L~~L~~L~L~~-N~I~~i~~~   82 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSN---NQITKLEGLP-----GLPRLKTLDLSN-NRISSISEG   82 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TT---S--S--TT---------TT--EEE--S-S---S-CHH
T ss_pred             cccccccccccccccccc------chhhhhcCCCEEECCC---CCCccccCcc-----ChhhhhhcccCC-CCCCccccc
Confidence            445666666665554322      444 467888888887   4666665432     567889999988 8888886 4


Q ss_pred             C-CCCCCCCEEeccCCCCCCcCCCC-C--CCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCceeeeCH
Q 039619          304 I-ENLTSFESLQLCCCPKLQKFPDN-G--LPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDP  375 (459)
Q Consensus       304 l-~~l~~L~~L~l~~c~~l~~lp~~-~--l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~~  375 (459)
                      + ..+++|++|++++ +++.++.+. .  -+++|+.|++.++|--...     .-...-+.++|.+++-+...+..
T Consensus        83 l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-----~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   83 LDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-----NYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             HHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGST-----THHHHHHHH-TT-SEETTEETTS
T ss_pred             hHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchh-----hHHHHHHHHcChhheeCCEEccH
Confidence            4 3689999999988 677777652 1  2789999999999843211     00112355777776655444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.07  E-value=2.8e-07  Score=91.68  Aligned_cols=184  Identities=16%  Similarity=0.129  Sum_probs=138.2

Q ss_pred             ceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEee
Q 039619           93 DPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYII  164 (459)
Q Consensus        93 ~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~  164 (459)
                      ..+++.    +.+..+|        |+.+.+.. +.+..+|..+..+..|..|+++. +++..+|..-.. --|+.|.++
T Consensus        79 ~aDlsr----NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~-lpLkvli~s  151 (722)
T KOG0532|consen   79 FADLSR----NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCD-LPLKVLIVS  151 (722)
T ss_pred             hhhccc----cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhc-CcceeEEEe
Confidence            345555    5677777        77777755 56778887788888999999987 678888855333 458999998


Q ss_pred             cccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCccccccc
Q 039619          165 SCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLI  244 (459)
Q Consensus       165 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~  244 (459)
                      + ++++.+|+.++.+.+|..|+.+.| .+..+|..++.+.+|+.|.+.. +.+..+|..-..=.|.+||++.|++...  
T Consensus       152 N-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~i--  226 (722)
T KOG0532|consen  152 N-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYL--  226 (722)
T ss_pred             c-CccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeec--
Confidence            8 689999999999999999999987 7788999999999999999987 4567777653344688999999888643  


Q ss_pred             ccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecC
Q 039619          245 LERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNF  295 (459)
Q Consensus       245 ~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c  295 (459)
                      |.   .+.+|+.|++|.|.+   +-+.+-|..+-.. ....--++|++.-|
T Consensus       227 Pv---~fr~m~~Lq~l~Len---NPLqSPPAqIC~k-GkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  227 PV---DFRKMRHLQVLQLEN---NPLQSPPAQICEK-GKVHIFKYLSTQAC  270 (722)
T ss_pred             ch---hhhhhhhheeeeecc---CCCCCChHHHHhc-cceeeeeeecchhc
Confidence            23   789999999999987   6777766543000 01223467777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=8e-07  Score=85.82  Aligned_cols=196  Identities=13%  Similarity=0.128  Sum_probs=118.9

Q ss_pred             ccccCcEEEeecCCCceeec---cccccccccceEEeecccCCccc---cccCCCCCcccEEeeccccCcccCcccC--C
Q 039619          130 LPATLENIYVDRCSKLAFLS---LRGNLSKALKHLYIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGL--R  201 (459)
Q Consensus       130 ~~~~L~~L~l~~c~~l~~l~---~~~~lp~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l--~  201 (459)
                      ...+|++..+.+| .+...+   ....+ ++++.|+++.. -+..+   -.-+..+++|+.|+++.+ .+....++.  .
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~-~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~  194 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKIL-PNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL  194 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhC-Ccceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccchh
Confidence            4467888888775 344444   23567 88999999873 33322   334566899999999876 333221211  3


Q ss_pred             CCCCccEEeeccCCCCcccc--CC-CCCCCccEEEEecCc-ccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCC
Q 039619          202 NLTSLQYLLIQDCPTIGSFT--AN-CFPTNLASVCIDYEK-IYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEK  277 (459)
Q Consensus       202 ~l~~L~~L~l~~c~~l~~lp--~~-~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~  277 (459)
                      .+++|+.|.++.|. +..-.  .. ..+++|+.|++..|. +....     .....+..|++|+|++   +++..++..-
T Consensus       195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-----~~~~i~~~L~~LdLs~---N~li~~~~~~  265 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKA-----TSTKILQTLQELDLSN---NNLIDFDQGY  265 (505)
T ss_pred             hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceec-----chhhhhhHHhhccccC---Cccccccccc
Confidence            57789999998885 22111  11 236789999988853 22111     1234577899999998   4554444210


Q ss_pred             CCCccCCCCcceEEeecCCCCCccC--C------CCCCCCCCEEeccCCCCCCcCCC---CCCCCCcceEEeeCCc
Q 039619          278 DTGKALPASLKHLSIWNFPNLERIS--S------IENLTSFESLQLCCCPKLQKFPD---NGLPTSLLRLEIYGCP  342 (459)
Q Consensus       278 ~~~~~~~~~L~~L~l~~c~~l~~l~--~------l~~l~~L~~L~l~~c~~l~~lp~---~~l~~sL~~L~i~~c~  342 (459)
                        ....++.|+.|.++. ..+.++.  .      ...+++|++|++..+ ++...+.   ....++|+.|.+...+
T Consensus       266 --~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  266 --KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             --ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence              001677888888887 5666654  2      245789999999884 4544443   2235677777665443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=2.2e-07  Score=85.42  Aligned_cols=59  Identities=20%  Similarity=0.336  Sum_probs=38.2

Q ss_pred             CCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCc--CCCCCCCCCcceEEeeCC
Q 039619          283 LPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQK--FPDNGLPTSLLRLEIYGC  341 (459)
Q Consensus       283 ~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~--lp~~~l~~sL~~L~i~~c  341 (459)
                      ..++|..|++++|..++.--  .+..++.|++|.++.|-.+-.  +-+-.-.|+|.+|++.||
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            34677777777777666522  566778888888888854421  101111578889998888

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=2.4e-07  Score=85.16  Aligned_cols=176  Identities=15%  Similarity=0.164  Sum_probs=103.9

Q ss_pred             ccCcEEEeecCCCceeec---cccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcc--cCCCCCCc
Q 039619          132 ATLENIYVDRCSKLAFLS---LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPN--GLRNLTSL  206 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~---~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L  206 (459)
                      +.|++||+++. .++.-.   +-..+ .+|+.|.+.+..--..+-..+..-.+|+.|+++.|+.++....  -+.+++.|
T Consensus       185 sRlq~lDLS~s-~it~stl~~iLs~C-~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VITVSTLHGILSQC-SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchh-heeHHHHHHHHHHH-HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            45777777662 333211   11233 5677777776433333334455567888888888877764321  23577888


Q ss_pred             cEEeeccCCCCccccC---CCCCCCccEEEEec--CcccccccccCCCCCCCCCccCEEEEeCCcCCCcee-cCCCCCCC
Q 039619          207 QYLLIQDCPTIGSFTA---NCFPTNLASVCIDY--EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS-FPPEKDTG  280 (459)
Q Consensus       207 ~~L~l~~c~~l~~lp~---~~~~~~L~~L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~-l~~~~~~~  280 (459)
                      .+|++++|...+..-.   ...-++|+.|+++|  .++...- .+  .-...+++|.+|++++  |..+.. .-..+   
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-~~--tL~~rcp~l~~LDLSD--~v~l~~~~~~~~---  334 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-LS--TLVRRCPNLVHLDLSD--SVMLKNDCFQEF---  334 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-HH--HHHHhCCceeeecccc--ccccCchHHHHH---
Confidence            8888888865433211   13356888888888  3332211 00  0124678888888888  555432 00011   


Q ss_pred             ccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          281 KALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       281 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                       ..++.|++|.++.|..+..-.  .+...++|.+|++.+|
T Consensus       335 -~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  335 -FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             -HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence             145678888888887653222  5677788888888886

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.72  E-value=5.4e-05  Score=54.08  Aligned_cols=57  Identities=26%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccC
Q 039619          156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDC  214 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c  214 (459)
                      |+|++|++++| .+..+| ..+..+++|++|+++++ .++.++. .+..+++|++|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            35666666664 555554 34556666666666654 4444443 4566666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.69  E-value=4.1e-05  Score=54.71  Aligned_cols=57  Identities=25%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             CccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          255 TSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       255 ~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                      ++|++|++++   +.+..+|.+.   ...+++|++|++++ +.++.++  .+..+++|++|++++|
T Consensus         1 p~L~~L~l~~---n~l~~i~~~~---f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSN---NKLTEIPPDS---FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETS---STESEECTTT---TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCC---CCCCccCHHH---HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            3566666666   3566665432   12355666666665 5566655  5566666666666654

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.67  E-value=9.1e-07  Score=90.37  Aligned_cols=122  Identities=23%  Similarity=0.220  Sum_probs=89.9

Q ss_pred             ccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCC
Q 039619          206 LQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALP  284 (459)
Q Consensus       206 L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~  284 (459)
                      |...+.+ |+.+..+... .+++.|+.|+++.|+++...      .+..++.|++|+|+.   +.+..+|.-..    .-
T Consensus       166 L~~a~fs-yN~L~~mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsy---N~L~~vp~l~~----~g  231 (1096)
T KOG1859|consen  166 LATASFS-YNRLVLMDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSY---NCLRHVPQLSM----VG  231 (1096)
T ss_pred             Hhhhhcc-hhhHHhHHHHHHHHHHhhhhccchhhhhhhH------HHHhccccccccccc---chhccccccch----hh
Confidence            4444442 4556555443 56889999999999988655      678899999999998   56777765321    22


Q ss_pred             CCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCC---CCCCCCcceEEeeCCch
Q 039619          285 ASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPD---NGLPTSLLRLEIYGCPL  343 (459)
Q Consensus       285 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~---~~l~~sL~~L~i~~c~~  343 (459)
                      ..|+.|.+++ |.++++-++.++.+|+.||++++ -+....+   -+.+.+|+.|++.|+|-
T Consensus       232 c~L~~L~lrn-N~l~tL~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  232 CKLQLLNLRN-NALTTLRGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhheeeeecc-cHHHhhhhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            3599999999 89999888999999999999983 4444333   12267899999999873

>PLN03150 hypothetical protein; Provisional

Probab=97.58  E-value=0.00011  Score=78.12  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             cccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCE
Q 039619          181 SLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRL  259 (459)
Q Consensus       181 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~  259 (459)
                      .++.|+++++.--..+|..+..+++|+.|+++++.....+|.. +.+++|+.|++++|++.... |+   .++++++|+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~---~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PE---SLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-ch---HHhcCCCCCE
Confidence            4778888887555578888889999999999887654567654 66889999999998888766 66   7889999999


Q ss_pred             EEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCcc
Q 039619          260 LTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERI  301 (459)
Q Consensus       260 L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l  301 (459)
                      |++++  +.....+|...+   ..+.++..+++.++..+...
T Consensus       495 L~Ls~--N~l~g~iP~~l~---~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        495 LNLNG--NSLSGRVPAALG---GRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             EECcC--CcccccCChHHh---hccccCceEEecCCccccCC
Confidence            99998  455557776542   12345677888875544443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.58  E-value=1e-05  Score=81.73  Aligned_cols=166  Identities=20%  Similarity=0.219  Sum_probs=84.7

Q ss_pred             ccccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccE
Q 039619          130 LPATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQY  208 (459)
Q Consensus       130 ~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  208 (459)
                      ...+|+.|++.+ +.++.+.. ...+ ++|++|++++ +.++.+ .++..++.|+.|++.++ .+..+ ..+..+++|+.
T Consensus        93 ~~~~l~~l~l~~-n~i~~i~~~l~~~-~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~  166 (414)
T KOG0531|consen   93 KLKSLEALDLYD-NKIEKIENLLSSL-VNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGN-LISDI-SGLESLKSLKL  166 (414)
T ss_pred             cccceeeeeccc-cchhhcccchhhh-hcchheeccc-cccccc-cchhhccchhhheeccC-cchhc-cCCccchhhhc
Confidence            334666666655 45555543 4445 6666666666 345555 23455566666666665 44444 23444666666


Q ss_pred             EeeccCCCCccccC--CCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCC
Q 039619          209 LLIQDCPTIGSFTA--NCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS  286 (459)
Q Consensus       209 L~l~~c~~l~~lp~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~  286 (459)
                      ++++++ .+..+..  .....+++.+.+.++.+....      .+..+..+..+++..   +.+..+-...     ....
T Consensus       167 l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~------~~~~~~~l~~~~l~~---n~i~~~~~l~-----~~~~  231 (414)
T KOG0531|consen  167 LDLSYN-RIVDIENDELSELISLEELDLGGNSIREIE------GLDLLKKLVLLSLLD---NKISKLEGLN-----ELVM  231 (414)
T ss_pred             ccCCcc-hhhhhhhhhhhhccchHHHhccCCchhccc------chHHHHHHHHhhccc---ccceeccCcc-----cchh
Confidence            666653 3334433  234556666666665544222      223333333334443   2332222111     1122


Q ss_pred             --cceEEeecCCCCCccC-CCCCCCCCCEEeccC
Q 039619          287 --LKHLSIWNFPNLERIS-SIENLTSFESLQLCC  317 (459)
Q Consensus       287 --L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~  317 (459)
                        |+.+++.+ +.+..++ .+..+..+..|++.+
T Consensus       232 ~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  232 LHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS  264 (414)
T ss_pred             HHHHHHhccc-Cccccccccccccccccccchhh
Confidence              66666666 5666653 555666666666655

>PLN03150 hypothetical protein; Provisional

Probab=97.48  E-value=0.00018  Score=76.39  Aligned_cols=104  Identities=21%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             cCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619          133 TLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI  211 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  211 (459)
                      .++.|+|+++.--..+|. ...+ ++|+.|+++++.....+|..+..+++|+.|+++++.-...+|..++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            377888887543334552 2567 89999999997555578888999999999999998665678888999999999999


Q ss_pred             ccCCCCccccCC--CCCCCccEEEEecC
Q 039619          212 QDCPTIGSFTAN--CFPTNLASVCIDYE  237 (459)
Q Consensus       212 ~~c~~l~~lp~~--~~~~~L~~L~l~~~  237 (459)
                      +++.....+|..  ....++..+++.+|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCC
Confidence            987655566653  22346667777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.16  E-value=5e-05  Score=76.80  Aligned_cols=186  Identities=20%  Similarity=0.274  Sum_probs=109.6

Q ss_pred             cCcEEEeecCCCcee-eccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619          133 TLENIYVDRCSKLAF-LSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI  211 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~-l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  211 (459)
                      .++.+++.. +.+.. ......+ .+|+.|++.+ +.++.+...+..+++|++|+++++ .++.+ .++..++.|+.|++
T Consensus        73 ~l~~l~l~~-n~i~~~~~~l~~~-~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   73 SLKELNLRQ-NLIAKILNHLSKL-KSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL  147 (414)
T ss_pred             hHHhhccch-hhhhhhhcccccc-cceeeeeccc-cchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence            445555443 23333 1112455 7888888877 466666544677888888888875 56665 35667777888888


Q ss_pred             ccCCCCccccCCCCCCCccEEEEecCcccccccccCCCC--CCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcce
Q 039619          212 QDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPG--LHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKH  289 (459)
Q Consensus       212 ~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~  289 (459)
                      .++ .+..+.....+.+|+.++++++.+....      .  +..+.+|+.+.+.+   +.+..+....     ....+..
T Consensus       148 ~~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie------~~~~~~~~~l~~l~l~~---n~i~~i~~~~-----~~~~l~~  212 (414)
T KOG0531|consen  148 SGN-LISDISGLESLKSLKLLDLSYNRIVDIE------NDELSELISLEELDLGG---NSIREIEGLD-----LLKKLVL  212 (414)
T ss_pred             ccC-cchhccCCccchhhhcccCCcchhhhhh------hhhhhhccchHHHhccC---CchhcccchH-----HHHHHHH
Confidence            774 4666665555778888888886665433      3  36677788888877   3443333221     2334444


Q ss_pred             EEeecCCCCCccCCCCCCCC--CCEEeccCCCCCCcCC-CCCCCCCcceEEeeC
Q 039619          290 LSIWNFPNLERISSIENLTS--FESLQLCCCPKLQKFP-DNGLPTSLLRLEIYG  340 (459)
Q Consensus       290 L~l~~c~~l~~l~~l~~l~~--L~~L~l~~c~~l~~lp-~~~l~~sL~~L~i~~  340 (459)
                      +++.+ +.+..+.++..+..  |+.+++.+ +.+..++ .......+..|++.+
T Consensus       213 ~~l~~-n~i~~~~~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  213 LSLLD-NKISKLEGLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS  264 (414)
T ss_pred             hhccc-ccceeccCcccchhHHHHHHhccc-Cccccccccccccccccccchhh
Confidence            45555 55555444444444  78888887 3455442 111234555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.01  E-value=6.5e-06  Score=84.31  Aligned_cols=38  Identities=8%  Similarity=-0.063  Sum_probs=19.3

Q ss_pred             CCCCeEeccCCCccCcccccCCccCCccceeecccccc
Q 039619           25 PKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETR   62 (459)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~   62 (459)
                      ++++.|++...+.-..-....+-.|..|++|.+++|+.
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L  121 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDL  121 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcch
Confidence            44555555444443322222333466677777776664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.98  E-value=0.0018  Score=56.89  Aligned_cols=103  Identities=17%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             CCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---
Q 039619          226 PTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---  302 (459)
Q Consensus       226 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---  302 (459)
                      ..+...+++++|++....      .+.+++.|..|.+.+   +.+..+....+   .++++|+.|.+.+ |++..+.   
T Consensus        41 ~d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~n---NrIt~I~p~L~---~~~p~l~~L~Ltn-Nsi~~l~dl~  107 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNN---NRITRIDPDLD---TFLPNLKTLILTN-NSIQELGDLD  107 (233)
T ss_pred             ccccceecccccchhhcc------cCCCccccceEEecC---Ccceeeccchh---hhccccceEEecC-cchhhhhhcc
Confidence            456666777776665433      567788888998887   67777766553   3567899999988 7777766   


Q ss_pred             CCCCCCCCCEEeccCCCCCCcCCCC-----CCCCCcceEEeeCCc
Q 039619          303 SIENLTSFESLQLCCCPKLQKFPDN-----GLPTSLLRLEIYGCP  342 (459)
Q Consensus       303 ~l~~l~~L~~L~l~~c~~l~~lp~~-----~l~~sL~~L~i~~c~  342 (459)
                      .+..+++|++|.+-+++ ++.-..-     ...|+|+.|++.+-.
T Consensus       108 pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence            67788899999888754 3322220     126888888887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.92  E-value=5.5e-05  Score=77.82  Aligned_cols=107  Identities=22%  Similarity=0.317  Sum_probs=62.4

Q ss_pred             eeEEEEecCCCCcc--ccCCccccccCcEEEeecC-CCceeec-----cccccccccceEEeecccCCccc--cccCCCC
Q 039619          110 VYQLQIIPCPSLTS--LWSKSELPATLENIYVDRC-SKLAFLS-----LRGNLSKALKHLYIISCSNLESI--AEGLDDN  179 (459)
Q Consensus       110 L~~L~l~~c~~l~~--lp~~~~~~~~L~~L~l~~c-~~l~~l~-----~~~~lp~~L~~L~l~~c~~l~~l--p~~l~~l  179 (459)
                      |+.|.+.+|..+..  +-......++|+.|++++| ......+     ....+ ++|+.|+++.|..+.+.  ..-...+
T Consensus       190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSIC-RKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhc-CCcCccchhhhhccCchhHHHHHhhC
Confidence            77777777776665  3224445567888887763 3322222     22344 67778888777654433  1112236


Q ss_pred             CcccEEeeccccCccc--CcccCCCCCCccEEeeccCCCC
Q 039619          180 TSLETMEIFICQNLKA--LPNGLRNLTSLQYLLIQDCPTI  217 (459)
Q Consensus       180 ~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l  217 (459)
                      ++|++|.+.+|..++.  +-.....+++|++|++++|..+
T Consensus       269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            7888888777765432  1122245677888888877765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.90  E-value=0.00028  Score=75.12  Aligned_cols=79  Identities=18%  Similarity=0.223  Sum_probs=39.5

Q ss_pred             ccCcEEEeecCCCceeec---cccccccccceEEeecccCC-ccccccCCCCCcccEEeeccccCcccCcccCCCCCCcc
Q 039619          132 ATLENIYVDRCSKLAFLS---LRGNLSKALKHLYIISCSNL-ESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQ  207 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~---~~~~lp~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  207 (459)
                      .+|++|++++-..+..-.   .+..| |+|+.|.+.+-.-. .++..-..++++|..||++++ +++.+ .+++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~L-PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTML-PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhC-cccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence            356666665532221111   12334 66666666552111 112223445666666666665 45555 4566666666


Q ss_pred             EEeecc
Q 039619          208 YLLIQD  213 (459)
Q Consensus       208 ~L~l~~  213 (459)
                      .|.+.+
T Consensus       199 ~L~mrn  204 (699)
T KOG3665|consen  199 VLSMRN  204 (699)
T ss_pred             HHhccC
Confidence            666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.86  E-value=0.0011  Score=43.66  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=15.8

Q ss_pred             ccceEEeecccCCccccccCCCCCcccEEeeccc
Q 039619          157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFIC  190 (459)
Q Consensus       157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  190 (459)
                      +|++|+++++ .++++|..+.++++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            4455555552 44455444555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.73  E-value=0.0017  Score=42.78  Aligned_cols=40  Identities=25%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             CcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCcccc
Q 039619          180 TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFT  221 (459)
Q Consensus       180 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp  221 (459)
                      ++|++|+++++ .++.+|..+.++++|+.|+++++ .+++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            47899999887 77788877889999999999886 466554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.70  E-value=5.4e-05  Score=77.88  Aligned_cols=230  Identities=18%  Similarity=0.212  Sum_probs=123.8

Q ss_pred             eeEEEEecCCCCcccc---CCccccccCcEEEeecCCCceee---ccccccccccceEEeecc-cCCcccc----ccCCC
Q 039619          110 VYQLQIIPCPSLTSLW---SKSELPATLENIYVDRCSKLAFL---SLRGNLSKALKHLYIISC-SNLESIA----EGLDD  178 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp---~~~~~~~~L~~L~l~~c~~l~~l---~~~~~lp~~L~~L~l~~c-~~l~~lp----~~l~~  178 (459)
                      ++.+.+..+.......   ......++|+.|.+.+|..+...   +..... ++|+.|++++| ......+    .....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (482)
T KOG1947|consen  163 LESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLLLSI  241 (482)
T ss_pred             HheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhhhhh
Confidence            6666665544332111   01123469999999999888863   344556 89999999883 3332222    23445


Q ss_pred             CCcccEEeeccccCcccCc-ccC-CCCCCccEEeeccCCCCccccCC---CCCCCccEEEEec-CcccccccccCCCCCC
Q 039619          179 NTSLETMEIFICQNLKALP-NGL-RNLTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCIDY-EKIYKPLILERGPGLH  252 (459)
Q Consensus       179 l~~L~~L~l~~c~~l~~lp-~~l-~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~-~~l~~~~~~~~~~~l~  252 (459)
                      +.+|+.|+++.|..+...- ..+ ..+++|+.|.+.+|..++.....   ...++|++|++++ ..+++.....   ...
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~---~~~  318 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA---LLK  318 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH---HHH
Confidence            7899999999987554321 112 23789999999889875443221   3367899999998 4443221011   224


Q ss_pred             CCCccCEEEEeCC-cCCCceecCCCCCCCccCC-CCcceEEeecCCCCCccC--CCCCCCCCC-EEeccCCCCCC-cCCC
Q 039619          253 RFTSVRLLTLFGG-ECCGVVSFPPEKDTGKALP-ASLKHLSIWNFPNLERIS--SIENLTSFE-SLQLCCCPKLQ-KFPD  326 (459)
Q Consensus       253 ~l~~L~~L~l~~~-~c~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~--~l~~l~~L~-~L~l~~c~~l~-~lp~  326 (459)
                      ++++|+.|.+... .|..++.+.-..-  .... ..+..+.+.+|.+++.+.  ..+ ..... .+.+.+|+.++ .+..
T Consensus       319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~--~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~  395 (482)
T KOG1947|consen  319 NCPNLRELKLLSLNGCPSLTDLSLSGL--LTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLEL  395 (482)
T ss_pred             hCcchhhhhhhhcCCCccHHHHHHHHh--hccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHH
Confidence            4666666555441 0223332211100  0011 245566666666666554  222 23333 46666676662 2221


Q ss_pred             C-CCCCCcceEEeeCCchhHH
Q 039619          327 N-GLPTSLLRLEIYGCPLIEE  346 (459)
Q Consensus       327 ~-~l~~sL~~L~i~~c~~L~~  346 (459)
                      . ....+++.|.+..|...+.
T Consensus       396 ~~~~~~~l~~L~l~~~~~~t~  416 (482)
T KOG1947|consen  396 RLCRSDSLRVLNLSDCRLVTD  416 (482)
T ss_pred             HhccCCccceEecccCccccc
Confidence            1 1122367777777765443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.70  E-value=0.00066  Score=72.35  Aligned_cols=15  Identities=20%  Similarity=0.321  Sum_probs=8.3

Q ss_pred             CCCCCCCCCEEeccC
Q 039619          303 SIENLTSFESLQLCC  317 (459)
Q Consensus       303 ~l~~l~~L~~L~l~~  317 (459)
                      .+.+|++|+.||++.
T Consensus       215 ~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISR  229 (699)
T ss_pred             HHhcccCCCeeeccc
Confidence            344555566666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.41  E-value=0.0025  Score=60.49  Aligned_cols=13  Identities=15%  Similarity=0.232  Sum_probs=6.2

Q ss_pred             CCCCccCEEEEeC
Q 039619          252 HRFTSVRLLTLFG  264 (459)
Q Consensus       252 ~~l~~L~~L~l~~  264 (459)
                      .++++|+.|++.+
T Consensus       210 ~~~~~LevLdl~D  222 (382)
T KOG1909|consen  210 EHCPHLEVLDLRD  222 (382)
T ss_pred             HhCCcceeeeccc
Confidence            4444455555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.05  E-value=0.0023  Score=60.75  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=89.6

Q ss_pred             CCCCCcccEEeeccccC----cccCcccCCCCCCccEEeeccCCCCccc---------------cCCCCCCCccEEEEec
Q 039619          176 LDDNTSLETMEIFICQN----LKALPNGLRNLTSLQYLLIQDCPTIGSF---------------TANCFPTNLASVCIDY  236 (459)
Q Consensus       176 l~~l~~L~~L~l~~c~~----l~~lp~~l~~l~~L~~L~l~~c~~l~~l---------------p~~~~~~~L~~L~l~~  236 (459)
                      +..+++|++|+++++--    +..+-.-+.++..|++|.+.+|- +...               ...+.++.|+.+...+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            33445666666665421    11111123445666666666653 2111               0113567888888888


Q ss_pred             CcccccccccCCCCCCCCCccCEEEEeCCcCCCce-----ecCCCCCCCccCCCCcceEEeecCCCCCccC------CCC
Q 039619          237 EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVV-----SFPPEKDTGKALPASLKHLSIWNFPNLERIS------SIE  305 (459)
Q Consensus       237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~-----~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~  305 (459)
                      |.+.......-...++..+.|+.+.+..+   .+.     .+....    ..+++|+.|++++ |-++.-.      .+.
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN---~I~~eG~~al~eal----~~~~~LevLdl~D-Ntft~egs~~LakaL~  238 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQN---GIRPEGVTALAEAL----EHCPHLEVLDLRD-NTFTLEGSVALAKALS  238 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecc---cccCchhHHHHHHH----HhCCcceeeeccc-chhhhHHHHHHHHHhc
Confidence            77653210000003566788999998872   221     111111    3678999999999 6665432      567


Q ss_pred             CCCCCCEEeccCCCCCCcCCC-------CCCCCCcceEEeeCCc
Q 039619          306 NLTSFESLQLCCCPKLQKFPD-------NGLPTSLLRLEIYGCP  342 (459)
Q Consensus       306 ~l~~L~~L~l~~c~~l~~lp~-------~~l~~sL~~L~i~~c~  342 (459)
                      .++.|+.|++++|. ++.=..       ....++|+.|.+.+|.
T Consensus       239 s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  239 SWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             ccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence            78899999999984 332111       0125789999998885

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=0.0012  Score=60.73  Aligned_cols=96  Identities=19%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             CccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---CC
Q 039619          228 NLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---SI  304 (459)
Q Consensus       228 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l  304 (459)
                      +.+.|+.+|..+.+..      .+..++.|+.|.++-   +.+.++..-.     .+++|++|+|.. |.+.++.   .+
T Consensus        20 ~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSv---NkIssL~pl~-----rCtrLkElYLRk-N~I~sldEL~YL   84 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSV---NKISSLAPLQ-----RCTRLKELYLRK-NCIESLDELEYL   84 (388)
T ss_pred             HhhhhcccCCCccHHH------HHHhcccceeEEeec---cccccchhHH-----HHHHHHHHHHHh-cccccHHHHHHH
Confidence            4445555554454433      345677777777765   4555554422     456777777776 6666666   56


Q ss_pred             CCCCCCCEEeccCCCCCCcCCCC------CCCCCcceEEe
Q 039619          305 ENLTSFESLQLCCCPKLQKFPDN------GLPTSLLRLEI  338 (459)
Q Consensus       305 ~~l~~L~~L~l~~c~~l~~lp~~------~l~~sL~~L~i  338 (459)
                      .++++|+.|.|..+|--..-+..      ..+|+|+.|+=
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            77888888888776544333321      12677777763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.51  E-value=0.062  Score=47.52  Aligned_cols=79  Identities=23%  Similarity=0.378  Sum_probs=40.7

Q ss_pred             CcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCcc
Q 039619          180 TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSV  257 (459)
Q Consensus       180 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L  257 (459)
                      .+...++++++ .+..+ ..+..++.|.+|.+.+ +.++.+...  .+.++|+.|.+.+|.+....=.+   .+..++.|
T Consensus        42 d~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~---pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD---PLASCPKL  115 (233)
T ss_pred             cccceeccccc-chhhc-ccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcc---hhccCCcc
Confidence            34556666665 34333 2455677777777754 455555433  34556666666664443211000   23445555


Q ss_pred             CEEEEeC
Q 039619          258 RLLTLFG  264 (459)
Q Consensus       258 ~~L~l~~  264 (459)
                      ++|.+-+
T Consensus       116 ~~Ltll~  122 (233)
T KOG1644|consen  116 EYLTLLG  122 (233)
T ss_pred             ceeeecC
Confidence            5555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.30  E-value=0.0055  Score=53.94  Aligned_cols=81  Identities=22%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             ccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCC
Q 039619          229 LASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIEN  306 (459)
Q Consensus       229 L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~  306 (459)
                      ++.++.++..+.... .+   .+.++++++.|.+.+  |..+...--+.  .....++|+.|+|++|+.+++-.  .+..
T Consensus       103 IeaVDAsds~I~~eG-le---~L~~l~~i~~l~l~~--ck~~dD~~L~~--l~~~~~~L~~L~lsgC~rIT~~GL~~L~~  174 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEG-LE---HLRDLRSIKSLSLAN--CKYFDDWCLER--LGGLAPSLQDLDLSGCPRITDGGLACLLK  174 (221)
T ss_pred             EEEEecCCchHHHHH-HH---HHhccchhhhheecc--ccchhhHHHHH--hcccccchheeeccCCCeechhHHHHHHH
Confidence            444554444443222 22   345566666666666  55543211100  00023455555555555555444  4444


Q ss_pred             CCCCCEEeccC
Q 039619          307 LTSFESLQLCC  317 (459)
Q Consensus       307 l~~L~~L~l~~  317 (459)
                      +++|+.|.+.+
T Consensus       175 lknLr~L~l~~  185 (221)
T KOG3864|consen  175 LKNLRRLHLYD  185 (221)
T ss_pred             hhhhHHHHhcC
Confidence            55555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.05  E-value=0.0027  Score=58.57  Aligned_cols=97  Identities=22%  Similarity=0.282  Sum_probs=61.1

Q ss_pred             ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCc--ccCCCCCCccEE
Q 039619          132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP--NGLRNLTSLQYL  209 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L  209 (459)
                      .+.++|+..+| .|.+|.+...+ +.|+.|.|+- +.+..+ ..+..+++|++|+|..+ .+.++-  ..+.++++|+.|
T Consensus        19 ~~vkKLNcwg~-~L~DIsic~kM-p~lEVLsLSv-NkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISICEKM-PLLEVLSLSV-NKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCC-CccHHHHHHhc-ccceeEEeec-cccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence            36677788776 67777777777 7888888875 455555 34667788888887764 343332  245677788888


Q ss_pred             eeccCCCCccccCC------CCCCCccEEE
Q 039619          210 LIQDCPTIGSFTAN------CFPTNLASVC  233 (459)
Q Consensus       210 ~l~~c~~l~~lp~~------~~~~~L~~L~  233 (459)
                      .|..++-...-+..      ..++||+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77765544333221      1255666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.85  E-value=0.025  Score=51.83  Aligned_cols=11  Identities=27%  Similarity=0.060  Sum_probs=5.0

Q ss_pred             CCCcceEEeeC
Q 039619          330 PTSLLRLEIYG  340 (459)
Q Consensus       330 ~~sL~~L~i~~  340 (459)
                      +++|+.|+-.+
T Consensus       142 l~~L~~LD~~d  152 (260)
T KOG2739|consen  142 LPSLKYLDGCD  152 (260)
T ss_pred             hhhhccccccc
Confidence            44555544433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=0.092  Score=49.23  Aligned_cols=39  Identities=15%  Similarity=0.280  Sum_probs=21.6

Q ss_pred             CCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCCCCCcC
Q 039619          285 ASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCPKLQKF  324 (459)
Q Consensus       285 ~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~l  324 (459)
                      +.+-.|.++. +++.++.   .+..+++|..|.+.+.|-...+
T Consensus       224 p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  224 PSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             Ccchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            3444555554 5555544   5556666666666665544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.18  E-value=0.86  Score=37.27  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=13.4

Q ss_pred             CCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeecc
Q 039619          176 LDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQD  213 (459)
Q Consensus       176 l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~  213 (459)
                      +..+++|+.+.+..  .++.++. .+..+++|+.+.+.+
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence            34445566665542  2333322 344455566665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.92  E-value=0.087  Score=28.81  Aligned_cols=9  Identities=22%  Similarity=0.183  Sum_probs=3.6

Q ss_pred             ccEEeeccc
Q 039619          182 LETMEIFIC  190 (459)
Q Consensus       182 L~~L~l~~c  190 (459)
                      |++|++++|
T Consensus         2 L~~Ldls~n   10 (22)
T PF00560_consen    2 LEYLDLSGN   10 (22)
T ss_dssp             ESEEEETSS
T ss_pred             ccEEECCCC
Confidence            334444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.77  E-value=0.1  Score=28.51  Aligned_cols=20  Identities=30%  Similarity=0.348  Sum_probs=12.8

Q ss_pred             ccceEEeecccCCccccccCC
Q 039619          157 ALKHLYIISCSNLESIAEGLD  177 (459)
Q Consensus       157 ~L~~L~l~~c~~l~~lp~~l~  177 (459)
                      +|++|++++| .++.+|++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            4677777776 5666666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.79  E-value=0.13  Score=47.27  Aligned_cols=106  Identities=17%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             CCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcc--cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCC
Q 039619          202 NLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKI--YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDT  279 (459)
Q Consensus       202 ~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l--~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~  279 (459)
                      .+..|+.|++.++ .++++.....+++|++|.++.|..  ...+ ..   ....+++|++|+++++....+.+++...  
T Consensus        41 ~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l-~v---l~e~~P~l~~l~ls~Nki~~lstl~pl~--  113 (260)
T KOG2739|consen   41 EFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGL-EV---LAEKAPNLKVLNLSGNKIKDLSTLRPLK--  113 (260)
T ss_pred             cccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccc-ee---hhhhCCceeEEeecCCccccccccchhh--
Confidence            3455666666554 233333333456777777777532  2111 11   2234577777777762001122333221  


Q ss_pred             CccCCCCcceEEeecCCCCCccC-----CCCCCCCCCEEeccCC
Q 039619          280 GKALPASLKHLSIWNFPNLERIS-----SIENLTSFESLQLCCC  318 (459)
Q Consensus       280 ~~~~~~~L~~L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~c  318 (459)
                         .+.+|..|++.+|.... +.     .+.-+++|++|+-..+
T Consensus       114 ---~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  114 ---ELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             ---hhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence               34456666666653322 21     2233455555555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.06  E-value=0.19  Score=25.61  Aligned_cols=9  Identities=22%  Similarity=0.346  Sum_probs=3.5

Q ss_pred             CCEEeccCC
Q 039619          310 FESLQLCCC  318 (459)
Q Consensus       310 L~~L~l~~c  318 (459)
                      |+.|++++|
T Consensus         3 L~~L~l~~n   11 (17)
T PF13504_consen    3 LRTLDLSNN   11 (17)
T ss_dssp             -SEEEETSS
T ss_pred             cCEEECCCC
Confidence            444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.84  E-value=1.7  Score=35.46  Aligned_cols=52  Identities=19%  Similarity=0.342  Sum_probs=18.0

Q ss_pred             cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEee
Q 039619          156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLI  211 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l  211 (459)
                      ++|+.+.+..  .++.++ ..+..+++|+.+.+.+  .+..++. .+..+.+|+.+.+
T Consensus        12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE
T ss_pred             CCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccc
Confidence            3445555432  233342 2244444555555543  2333322 2334445555555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.56  E-value=0.24  Score=46.50  Aligned_cols=204  Identities=15%  Similarity=0.150  Sum_probs=107.3

Q ss_pred             cccceEEeecccCCccc---cccCCCCCcccEEeeccccCcccCcccC-CCCCCccEEeeccCCCCccccCC---CCCCC
Q 039619          156 KALKHLYIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGL-RNLTSLQYLLIQDCPTIGSFTAN---CFPTN  228 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~~---~~~~~  228 (459)
                      +.+++|++.++ .+..+   -..+.++|.|++|+++.+ .+.+.-..+ ....+|+.|.+.| ..+..-...   ..++.
T Consensus        71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence            77888888873 45444   334567899999999765 333221222 2456788888865 222111111   12455


Q ss_pred             ccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCCcCCCc-----eecCCCCCCCccCCCCcceEEeecCCCCCccC
Q 039619          229 LASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGGECCGV-----VSFPPEKDTGKALPASLKHLSIWNFPNLERIS  302 (459)
Q Consensus       229 L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~c~~l-----~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  302 (459)
                      +++|+++.|++.......  .... --+.+++|...+  |...     ..+.       ..++++..+-+..| -+++..
T Consensus       148 vtelHmS~N~~rq~n~Dd--~c~e~~s~~v~tlh~~~--c~~~~w~~~~~l~-------r~Fpnv~sv~v~e~-PlK~~s  215 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDD--NCIEDWSTEVLTLHQLP--CLEQLWLNKNKLS-------RIFPNVNSVFVCEG-PLKTES  215 (418)
T ss_pred             hhhhhhccchhhhhcccc--ccccccchhhhhhhcCC--cHHHHHHHHHhHH-------hhcccchheeeecC-cccchh
Confidence            566666654322110000  0001 112444455544  3221     1111       13456777777764 344443


Q ss_pred             ---CCCCCCCCCEEeccCCCCCCcCCC---CCCCCCcceEEeeCCchhHHhhhcCcCC-ccccccCCCeEEeCceeeeCH
Q 039619          303 ---SIENLTSFESLQLCCCPKLQKFPD---NGLPTSLLRLEIYGCPLIEERFEKDKGQ-YWSLIADIPCVRIDCHYVIDP  375 (459)
Q Consensus       303 ---~l~~l~~L~~L~l~~c~~l~~lp~---~~l~~sL~~L~i~~c~~L~~~~~~~~~~-~~~~i~~i~~l~~~~~~~l~~  375 (459)
                         +...++.+.-|.+.. .++.+...   -.-.++|..|.+.+.|.....-.   ++ ..--|++++++.+-+..++..
T Consensus       216 ~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~---~err~llIaRL~~v~vLNGskIss  291 (418)
T KOG2982|consen  216 SEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG---GERRFLLIARLTKVQVLNGSKISS  291 (418)
T ss_pred             hcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC---CcceEEEEeeccceEEecCcccch
Confidence               444566666666655 34544332   11158899999999886654311   12 234577888888877777765


Q ss_pred             HHH
Q 039619          376 KAQ  378 (459)
Q Consensus       376 ~~~  378 (459)
                      ..+
T Consensus       292 ~er  294 (418)
T KOG2982|consen  292 RER  294 (418)
T ss_pred             hhh
Confidence            443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.43  E-value=0.06  Score=47.61  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=41.3

Q ss_pred             CCCCcceEEeecCCCCCccC--CC-CCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCch
Q 039619          283 LPASLKHLSIWNFPNLERIS--SI-ENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCPL  343 (459)
Q Consensus       283 ~~~~L~~L~l~~c~~l~~l~--~l-~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~~  343 (459)
                      .+++++.|.+.+|..+.+..  .+ +-.++|+.|+|++|+++++-.-..+  +++|+.|.+.+.|.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            45677788888887776654  22 2457888888888888776443222  67788888877653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.59  E-value=0.044  Score=45.46  Aligned_cols=77  Identities=16%  Similarity=0.235  Sum_probs=40.5

Q ss_pred             cCcEEEeecCCCceeec--cccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEe
Q 039619          133 TLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL  210 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  210 (459)
                      .|+..+|++ +.++.+|  +...+ +.++.|++.+ +.+.++|+.+..++.|+.|+++.+ .+...|.-+..+.+|-.|+
T Consensus        54 el~~i~ls~-N~fk~fp~kft~kf-~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSD-NGFKKFPKKFTIKF-PTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             eEEEEeccc-chhhhCCHHHhhcc-chhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence            344445544 3444444  11223 4556666665 356666666666666666666654 3444454444455555555


Q ss_pred             ecc
Q 039619          211 IQD  213 (459)
Q Consensus       211 l~~  213 (459)
                      ..+
T Consensus       130 s~~  132 (177)
T KOG4579|consen  130 SPE  132 (177)
T ss_pred             CCC
Confidence            443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.45  E-value=0.18  Score=46.67  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=21.3

Q ss_pred             cCCCCCcccEEeeccccCcccCcc----cCCCCCCccEEeeccC
Q 039619          175 GLDDNTSLETMEIFICQNLKALPN----GLRNLTSLQYLLIQDC  214 (459)
Q Consensus       175 ~l~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~c  214 (459)
                      .+..|++|+..+++++.--...|+    .+.+-+.|++|.+++|
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            344567777777766532222222    3345566677766654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=83.02  E-value=0.18  Score=41.96  Aligned_cols=60  Identities=15%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             CCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCC
Q 039619          252 HRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCC  318 (459)
Q Consensus       252 ~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c  318 (459)
                      .....|+..++++   +.++.+|..+.   ..++.++.|++.+ +.+.++| .+..++.|+.|+++.+
T Consensus        50 ~~~~el~~i~ls~---N~fk~fp~kft---~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   50 SKGYELTKISLSD---NGFKKFPKKFT---IKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             hCCceEEEEeccc---chhhhCCHHHh---hccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence            3445566666666   46666665431   2344666677766 6777777 6666777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	459
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 53/244 (21%), Positives = 85/244 (34%), Gaps = 44/244 (18%)

Query: 119 PSLTSLW----SKSELPATLENIYVDRCSKLAFLSLRGN-LS---------KALKHLYII 164
            +  +      +   L AT + +          L LR   L            L+H+ I 
Sbjct: 53  ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI- 111

Query: 165 SCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANC 224
             + L  + + +     LET+ +     L+ALP  + +L  L+ L I+ CP +       
Sbjct: 112 DAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTE----- 165

Query: 225 FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALP 284
            P  LAS              +         +++ L L   E  G+ S P          
Sbjct: 166 LPEPLAS-------------TDASGEHQGLVNLQSLRL---EWTGIRSLPAS--IANL-- 205

Query: 285 ASLKHLSIWNFPNLERI-SSIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCP 342
            +LK L I N   L  +  +I +L   E L L  C  L+ +P   G    L RL +  C 
Sbjct: 206 QNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 343 LIEE 346
            +  
Sbjct: 265 NLLT 268

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 47/237 (19%), Positives = 83/237 (35%), Gaps = 61/237 (25%)

Query: 128 SELPATLENIYVDRCSKLAFLSLRGN-LS---------KALKHLYIISCSNLESI----- 172
            ELP T++       + L  L+L  N L            L+ L I +C  L  +     
Sbjct: 117 MELPDTMQQ-----FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 173 ----AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTN 228
               +       +L+++ +     +++LP  + NL +L+ L I++               
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS-------------P 217

Query: 229 LASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK 288
           L+++                P +H    +  L L G  C  + ++PP    G    A LK
Sbjct: 218 LSAL---------G------PAIHHLPKLEELDLRG--CTALRNYPPI--FGGR--APLK 256

Query: 289 HLSIWNFPNLERI-SSIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPL 343
            L + +  NL  +   I  LT  E L L  C  L + P       +   + +     
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 21/122 (17%)

Query: 114 QIIPCPSLTSLW----SKSELPATLENIYVDRCSKLAFLSLR-----------GNLSKAL 158
           +     +L SL         LPA++ N        L  L +R            +L K L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIAN-----LQNLKSLKIRNSPLSALGPAIHHLPK-L 231

Query: 159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIG 218
           + L +  C+ L +          L+ + +  C NL  LP  +  LT L+ L ++ C  + 
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 219 SF 220
             
Sbjct: 292 RL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFL--SLRGNLSKALKHLYIISCSNL 169
            L  +  P++  L         LE + +  C+ L        G  +  LK L +  CSNL
Sbjct: 217 PLSALG-PAIHHLPK-------LEELDLRGCTALRNYPPIF-GGRAP-LKRLILKDCSNL 266

Query: 170 ESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDC 214
            ++   +   T LE +++  C NL  LP+ +  L +   +L+   
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 25/199 (12%), Positives = 51/199 (25%), Gaps = 46/199 (23%)

Query: 180 TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKI 239
           +  E +       L+   + L               +      +  P          +  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71

Query: 240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHL--------- 290
               +LE             L L       +  FP +    +   + L+H+         
Sbjct: 72  --ADLLEDA----TQPGRVALEL---RSVPLPQFPDQ--AFRL--SHLQHMTIDAAGLME 118

Query: 291 ---SIWNFPNLERI-----------SSIENLTSFESLQLCCCPKLQKFPDN--------- 327
              ++  F  LE +           +SI +L     L +  CP+L + P+          
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 328 -GLPTSLLRLEIYGCPLIE 345
                +L  L +    +  
Sbjct: 179 HQGLVNLQSLRLEWTGIRS 197

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 32/251 (12%), Positives = 73/251 (29%), Gaps = 51/251 (20%)

Query: 113 LQIIPCPSLTSLWSK-----------SELPATLENIYVDRCSKLAFLSLRGN------LS 155
            ++ P    + +  K           + +   ++       +KL  +    +      ++
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR-----LTKLQIIYFANSPFTYDNIA 466

Query: 156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCP 215
              +          E+      +   L  +E++ C N+  LP+ L +L  LQ L I    
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 216 TIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP 275
            I +       T LA                          +++  +       +  FP 
Sbjct: 527 GISAAQLKADWTRLA------------------DDEDTGPKIQIFYMGY---NNLEEFPA 565

Query: 276 EKDTGKALPASLKHLSIWNFPN-LERISSIENLTSFESLQLCCCPKLQKFPDN--GLPTS 332
                K +   L  L   +  N +  + +         L+L    ++++ P++       
Sbjct: 566 SASLQK-MV-KLGLLDCVH--NKVRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQ 620

Query: 333 LLRLEIYGCPL 343
           +  L      L
Sbjct: 621 VEGLGFSHNKL 631

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 52/230 (22%)

Query: 70  SKGNKTADPGKRSNNGPVSVTLKDP-EVLDCPV----CYEPLTI-P--VYQLQIIPCPSL 121
             G  T D  K  N   ++  ++    VL+ P      ++ L++ P   +    IP   L
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAH----IPTILL 392

Query: 122 TSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSK-ALKHLYIISCSNLE---------- 170
           + +W      + +  + V++  K + +  +   S  ++  +Y+     LE          
Sbjct: 393 SLIWFDVI-KSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 171 ---SIAEGLD-DNTSLETMEIFICQNL-----KALPNGLRNLTSLQYL--------LIQD 213
              +I +  D D+     ++ +   ++              L  + +L        +  D
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 214 CPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLF 263
                  TA     ++ +     +  YKP I +  P   R   V  +  F
Sbjct: 511 S------TAWNASGSILNTLQQLKF-YKPYICDNDPKYERL--VNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 67/415 (16%), Positives = 111/415 (26%), Gaps = 124/415 (29%)

Query: 93  DPEVLDCPVCYEPLTIPVYQLQIIP---CP----SLTSLWSKSELPATLENIYV--DRCS 143
           D E  +    Y+ + + V++   +    C        S+ SK E+    ++I +  D  S
Sbjct: 8   DFETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEI----DHIIMSKDAVS 62

Query: 144 KLAFL------------------SLRGN---LSKALKHLYIISCSNLESIAEGLD----D 178
               L                   LR N   L   +K              E  D    D
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 179 NTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLA-SVCIDYE 237
           N       +   Q    L   L  L   + +LI      G        T +A  VC+ Y+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------TWVALDVCLSYK 175

Query: 238 KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPN 297
                 +  +         +  L L    C          ++ + +   L+ L     PN
Sbjct: 176 ------VQCKMDF-----KIFWLNL--KNC----------NSPETVLEMLQKLLYQIDPN 212

Query: 298 L-ERISSIENLT-SFESLQLCCCPKLQK-FPDNGLPTSLLRL------EI-----YGCP- 342
              R     N+     S+Q     +L++          LL L      +        C  
Sbjct: 213 WTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 343 LIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQRQLIQTGDYTIPHSSAHFFPYQLI 402
           L+  R    K      + D        H  +D                H S    P ++ 
Sbjct: 269 LLTTR---FKQ-----VTDFLSAATTTHISLD----------------HHSMTLTPDEVK 304

Query: 403 KLISGRT-TAFADEPSEQDDSGLRAPLVVT--GLSLS---NRIK--LYYYCDPYE 449
            L+         D P E   +    P  ++    S+           +  CD   
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 40/239 (16%)

Query: 112 QLQIIPCPSLTSLWSKSELPATLENIYVD------RCSKLAFLSLRGNLSKALKHLYIIS 165
            L  +P     ++ SK+E          +         ++A   LR  L +    L + +
Sbjct: 22  NLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL-N 79

Query: 166 CSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCF 225
              L S+ E       LE++    C +L  LP   ++L SL            + +    
Sbjct: 80  NLGLSSLPELP---PHLESLVAS-CNSLTELPELPQSLKSLLVDNNNLK----ALSD--L 129

Query: 226 PTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPA 285
           P  L  + +   +      LE+ P L   + ++++ +       +   P         P 
Sbjct: 130 PPLLEYLGVSNNQ------LEKLPELQNSSFLKIIDVDN---NSLKKLPDL-------PP 173

Query: 286 SLKHLSIWNFPN-LERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPL 343
           SL+ ++  N  N LE +  ++NL    ++       L+K PD  LP SL  +      L
Sbjct: 174 SLEFIAAGN--NQLEELPELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNNIL 227

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 128 SELPATLENIYVDRCSKLAFLSLRGN------LSKALKHLYIISCSNLESIAEGLDDNTS 181
           + +   +        +KL    +  +      + +A ++         ++     D+   
Sbjct: 196 TFVSKAVMR-----LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 182 LETMEIFICQNLKALPNGLRNLTSLQYL 209
           L  +E++ C NL  LP  L+ L  +Q +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLI 278

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 41/265 (15%), Positives = 75/265 (28%), Gaps = 39/265 (14%)

Query: 134 LENIYVDRCSKLAFLSLR--GNLSKALKHLYIISCSNLESIAEG-LDDNTSLETMEIFIC 190
           LE I + +   L  +      NL K L  + I   +NL  I      +  +L+ + I   
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 191 QNLKALPNGL-RNLTSLQYLLIQDCPTIGSFTANCF---PTNLASVCIDYEKIY------ 240
             +K LP+    +      L IQD   I +   N F         + ++   I       
Sbjct: 115 G-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 241 ------KPLILERGPGLHR-----FTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKH 289
                   L L     L       F       +       + S P           +LK 
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY------GLENLKK 227

Query: 290 LSIWNFPNLERISSIENLTSFESLQL-----CCCPKLQKFPDNGLPTSLLRLEIYGCPLI 344
           L   +  NL+++ ++E L +     L     CC      +         +  +      +
Sbjct: 228 LRARSTYNLKKLPTLEKLVALMEASLTYPSHCCA--FANWRRQISELHPICNKSILRQEV 285

Query: 345 EERFEKDKGQYWSLIADIPCVRIDC 369
           +   +    +      +        
Sbjct: 286 DYMTQARGQRSSLAEDNESSYSRGF 310

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 47/235 (20%), Positives = 89/235 (37%), Gaps = 33/235 (14%)

Query: 118 CPSLTSLW-SKSELPATLENIYVDRCSKLAFLSLRGN-------LSKALKHLYIISCSNL 169
             +LT L    +++   ++ +     + L  L L  N       LS  L  L  +S  N 
Sbjct: 111 LTNLTGLTLFNNQI-TDIDPL--KNLTNLNRLELSSNTISDISALSG-LTSLQQLSFGNQ 166

Query: 170 ESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNL 229
            +  + L + T+LE ++I   + +  +   L  LT+L+ L+  +   I   T     TNL
Sbjct: 167 VTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQ-ISDITPLGILTNL 223

Query: 230 ASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKH 289
             + ++  ++           L   T++  L L       + +  P       L   L  
Sbjct: 224 DELSLNGNQLKDI------GTLASLTNLTDLDLAN---NQISNLAPLSG----LT-KLTE 269

Query: 290 LSIWNFPN-LERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPL 343
           L +    N +  IS +  LT+  +L+L    +L+         +L  L +Y   +
Sbjct: 270 LKLGA--NQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 44/235 (18%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 118 CPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGN-------LSKALKHLYIISCSN-- 168
             SL  L   +++    +   +   + L  L +  N       L+K L +L  +  +N  
Sbjct: 155 LTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSDISVLAK-LTNLESLIATNNQ 210

Query: 169 LESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTN 228
           +  I   L   T+L+ + +   Q LK +   L +LT+L  L + +   I +       T 
Sbjct: 211 ISDI-TPLGILTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQ-ISNLAPLSGLTK 266

Query: 229 LASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK 288
           L  + +   +I           L   T++  L L       +    P  +    L  +L 
Sbjct: 267 LTELKLGANQISNI------SPLAGLTALTNLELNE---NQLEDISPISN----LK-NLT 312

Query: 289 HLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPL 343
           +L+++   N+  IS + +LT  + L      K+         T++  L      +
Sbjct: 313 YLTLYF-NNISDISPVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 47/238 (19%), Positives = 86/238 (36%), Gaps = 39/238 (16%)

Query: 118 CPSLTSLW-SKSELPATLENIYVDRCSKLAFLSLRGN----------LSKALKHLYIISC 166
             +LT +  S ++L   +  +     +KL  + +  N          L+  L  L +   
Sbjct: 67  LNNLTQINFSNNQL-TDITPL--KNLTKLVDILMNNNQIADITPLANLTN-LTGLTL-FN 121

Query: 167 SNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFP 226
           + +  I + L + T+L  +E+     +  +   L  LTSLQ L   +  T     AN   
Sbjct: 122 NQITDI-DPLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQVTDLKPLANL-- 176

Query: 227 TNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS 286
           T L  + I   K+           L + T++  L         +    P       L  +
Sbjct: 177 TTLERLDISSNKVSDI------SVLAKLTNLESLIATN---NQISDITPLGI----LT-N 222

Query: 287 LKHLSIWNFPN-LERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPL 343
           L  LS+    N L+ I ++ +LT+   L L    ++         T L  L++    +
Sbjct: 223 LDELSLNG--NQLKDIGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQI 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 27/131 (20%)

Query: 112 QLQIIP--CPSLTSLW-------SKSELPATLENIYVDR---------CSKLAFLSLRGN 153
           +L  +P    SL  L           ELPA LE I  D           + L  LS+R N
Sbjct: 111 RLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN 170

Query: 154 ----LSKALKHLYIISCSN--LESIAEGLDDNTSLETMEIFI-CQN--LKALPNGLRNLT 204
               L +  + L  +  S   LES+      N   E  EIF  C+   +  +P  + +L 
Sbjct: 171 QLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230

Query: 205 SLQYLLIQDCP 215
               ++++D P
Sbjct: 231 PTCTIILEDNP 241

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 119 PSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGN-------LS--KALKHLYIISCSNL 169
            SLT +   +     L  I  +    +  L++          +S    L+ L I+     
Sbjct: 44  NSLTYITLANINVTDLTGI--EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 170 ESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNL 229
                 L   TSL  ++I    +  ++   +  L  +  + +     I           L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 230 ASVCIDYEKI 239
            S+ I ++ +
Sbjct: 162 KSLNIQFDGV 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 45/223 (20%)

Query: 132 ATLENIYVDRCSKLAFLSLRGN--------LSKALKHLYIISCSNLESIAEGLDDNTSLE 183
           A ++ +     +  A L++  +        L   +  L I   +NL S+         L 
Sbjct: 29  AVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVI-PDNNLTSLPALP---PELR 84

Query: 184 TMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPL 243
           T+E+   Q L +LP     L  L               A   P+ L  + I   +     
Sbjct: 85  TLEVSGNQ-LTSLPVLPPGLLELSIFSNPLT----HLPA--LPSGLCKLWIFGNQ----- 132

Query: 244 ILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISS 303
            L   P L     ++ L++       + S P         P+ L  L  +N  N  +++S
Sbjct: 133 -LTSLPVL--PPGLQELSVSD---NQLASLPAL-------PSELCKLWAYN--N--QLTS 175

Query: 304 I-ENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIE 345
           +    +  + L +    +L   P   LP+ L +L  Y   L  
Sbjct: 176 LPMLPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNRLTS 215

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 134 LENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSN-----LESIAEGLDDNTSLETMEIF 188
           ++ I       ++         + ++ + +  C       LE +++  +   S+  MEI 
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122

Query: 189 ICQNL--KALPNGLRNLTSLQYLLIQDCPTI 217
            C N+  K +   L +  +L+YL + D P +
Sbjct: 123 SCGNVTDKGI-IALHHFRNLKYLFLSDLPGV 152

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 35/267 (13%), Positives = 73/267 (27%), Gaps = 46/267 (17%)

Query: 118 CPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI----A 173
                      ++    + + +    KL  L L       +  L+    + +  +    A
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP-FAAQIRKLDLLYA 303

Query: 174 EGLDDN--------TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCF 225
               ++         +LE +E       + L    +    L+ L I+             
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 226 P-------------TNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS 272
                           L  + +    I    +   G  L      RL+ L   +    ++
Sbjct: 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL---DREERIT 420

Query: 273 FPPEKDTGKALPASLKHLSIWNFPNLERI---SSIENLTSF----ESLQLCCCPKLQKFP 325
             P  +  ++L    K L  + F   +       +  +  +      + L    +     
Sbjct: 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES---- 476

Query: 326 DNGLP------TSLLRLEIYGCPLIEE 346
           D GL        +L +LE+ GC   E 
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSER 503

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	459
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.59
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.58
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.41
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.4
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.4
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.29
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.21
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.92
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.89
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.87
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.85
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.82
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.8
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.86
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.2
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.0
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.12
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.04

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=5.4e-21  Score=186.99  Aligned_cols=293  Identities=15%  Similarity=0.112  Sum_probs=198.4

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC  102 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l  102 (459)
                      .+++|++|++.+...... .  ....+++|++|.+.++....           +     .....+ ++|++|++++|   
T Consensus        42 ~l~~L~~L~l~~~~i~~~-~--~~~~~~~L~~L~l~~n~i~~-----------~-----~~~~~l-~~L~~L~L~~n---   98 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASI-Q--GIEYLTNLEYLNLNGNQITD-----------I-----SPLSNL-VKLTNLYIGTN---   98 (347)
T ss_dssp             HHTTCSEEECCSSCCCCC-T--TGGGCTTCCEEECCSSCCCC-----------C-----GGGTTC-TTCCEEECCSS---
T ss_pred             hcccccEEEEeCCccccc-h--hhhhcCCccEEEccCCcccc-----------c-----hhhhcC-CcCCEEEccCC---
Confidence            578899999887654322 1  24468889999998774220           0     011233 48889998886   


Q ss_pred             CCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCcccccc
Q 039619          103 YEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEG  175 (459)
Q Consensus       103 ~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~  175 (459)
                       .+..+|       |++|++++ +.++.++. ...+++|++|++++|..+..++....+ ++|++|++++| .+..++. 
T Consensus        99 -~i~~~~~~~~l~~L~~L~l~~-n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l-~~L~~L~l~~~-~~~~~~~-  172 (347)
T 4fmz_A           99 -KITDISALQNLTNLRELYLNE-DNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNM-TGLNYLTVTES-KVKDVTP-  172 (347)
T ss_dssp             -CCCCCGGGTTCTTCSEEECTT-SCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTC-TTCCEEECCSS-CCCCCGG-
T ss_pred             -cccCchHHcCCCcCCEEECcC-CcccCchh-hccCCceeEEECCCCCCcccccchhhC-CCCcEEEecCC-CcCCchh-
Confidence             333333       88999977 45667764 555668999999888777777766677 88899998886 4555544 


Q ss_pred             CCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCC
Q 039619          176 LDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFT  255 (459)
Q Consensus       176 l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  255 (459)
                      +..+++|++|++++| .+..++. +..+++|+.|+++++ .+..++....+++|++|+++++.++...      .+..++
T Consensus       173 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~l~  243 (347)
T 4fmz_A          173 IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNNKITDLS------PLANLS  243 (347)
T ss_dssp             GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCT
T ss_pred             hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCchhhcCCcCCEEEccCCccCCCc------chhcCC
Confidence            777888999998887 5556654 677888888888775 4445444445778888888887776544      467888


Q ss_pred             ccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCC--CCCCc
Q 039619          256 SVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNG--LPTSL  333 (459)
Q Consensus       256 ~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~--l~~sL  333 (459)
                      +|++|++++   +.+..++..     ..+++|++|++++ +.++.++.+..+++|++|++++|. +...+...  -+++|
T Consensus       244 ~L~~L~l~~---n~l~~~~~~-----~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          244 QLTWLEIGT---NQISDINAV-----KDLTKLKMLNVGS-NQISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNL  313 (347)
T ss_dssp             TCCEEECCS---SCCCCCGGG-----TTCTTCCEEECCS-SCCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTC
T ss_pred             CCCEEECCC---CccCCChhH-----hcCCCcCEEEccC-CccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccC
Confidence            888888888   355555432     2667888888888 577777766778888888888864 44333211  25788


Q ss_pred             ceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCce
Q 039619          334 LRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCH  370 (459)
Q Consensus       334 ~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~  370 (459)
                      ++|++++|+- ....      ....+.++..+.+.++
T Consensus       314 ~~L~L~~n~l-~~~~------~~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          314 TTLFLSQNHI-TDIR------PLASLSKMDSADFANQ  343 (347)
T ss_dssp             SEEECCSSSC-CCCG------GGGGCTTCSEESSSCC
T ss_pred             CEEEccCCcc-cccc------Chhhhhccceeehhhh
Confidence            8888888862 2211      1233445666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=5.2e-22  Score=214.62  Aligned_cols=330  Identities=12%  Similarity=0.017  Sum_probs=195.6

Q ss_pred             CCCCCCCeEeccCCCccCcccccCCccCC-ccceeecccccccccc--CCC---CCCCcccCCCCCC-------CCCCCC
Q 039619           22 SRFPKRQRSSQQDLDESEYSEEVEEEEFP-TVQRQARSQETRAADK--GGG---SKGNKTADPGKRS-------NNGPVS   88 (459)
Q Consensus        22 ~~f~~L~~L~l~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~~~~~--~~~---~~~~~~~~~~~~~-------~~~~lp   88 (459)
                      ..+++|++|++.++........ ....++ +|+.|.+.++......  ...   ....+.++.....       ....+ 
T Consensus       340 ~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-  417 (768)
T 3rgz_A          340 LKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-  417 (768)
T ss_dssp             TTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-
T ss_pred             hcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-
Confidence            3578888888877643211111 122344 7777777766432100  000   0111111111110       01122 


Q ss_pred             CCcCceEEeCCCCC----CCCCccc-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccceEE
Q 039619           89 VTLKDPEVLDCPVC----YEPLTIP-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKHLY  162 (459)
Q Consensus        89 ~~L~~L~l~~c~~l----~~l~~lp-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~  162 (459)
                      ++|++|++++|.-.    ..+..++ |++|++++|.....+|.....+++|++|+++++.....+|. ...+ ++|++|+
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~  496 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWIS  496 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEE
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEE
Confidence            36777777775210    0011122 77788877654446665556667888888877654445552 2556 7888888


Q ss_pred             eecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-------------------
Q 039619          163 IISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-------------------  223 (459)
Q Consensus       163 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-------------------  223 (459)
                      +++|.....+|..++.+++|++|++++|.....+|..+..+++|+.|++++|.....+|..                   
T Consensus       497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred             ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence            8887655567777888888888888887655577777888888888888776433233311                   


Q ss_pred             ----------------------------------------------------CCCCCccEEEEecCcccccccccCCCCC
Q 039619          224 ----------------------------------------------------CFPTNLASVCIDYEKIYKPLILERGPGL  251 (459)
Q Consensus       224 ----------------------------------------------------~~~~~L~~L~l~~~~l~~~~~~~~~~~l  251 (459)
                                                                          +.+++|+.|++++|++++.+ |.   .+
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i-p~---~l  652 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PK---EI  652 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC-CG---GG
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC-CH---HH
Confidence                                                                11356788888888777665 55   67


Q ss_pred             CCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-ccC-CCCCCCCCCEEeccCCCCCCcCCCCCC
Q 039619          252 HRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-RIS-SIENLTSFESLQLCCCPKLQKFPDNGL  329 (459)
Q Consensus       252 ~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l  329 (459)
                      +.+++|+.|++++  +.-...+|..++    .+++|+.|++++ +++. .+| .+..+++|++|++++|+--..+|..+.
T Consensus       653 ~~l~~L~~L~Ls~--N~l~g~ip~~l~----~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~  725 (768)
T 3rgz_A          653 GSMPYLFILNLGH--NDISGSIPDEVG----DLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ  725 (768)
T ss_dssp             GGCTTCCEEECCS--SCCCSCCCGGGG----GCTTCCEEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred             hccccCCEEeCcC--CccCCCCChHHh----CCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence            8888888888888  344447777663    677888888888 4554 677 778888888888888766667777655


Q ss_pred             CCCcceEEeeCCchhHH----hhhcCcCCccccccCCCeE
Q 039619          330 PTSLLRLEIYGCPLIEE----RFEKDKGQYWSLIADIPCV  365 (459)
Q Consensus       330 ~~sL~~L~i~~c~~L~~----~~~~~~~~~~~~i~~i~~l  365 (459)
                      +.++....+.++|.|-.    .|....+++|++++|++.+
T Consensus       726 ~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          726 FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             GGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred             hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence            56666666777664432    5777788899999998865

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=2.3e-19  Score=183.17  Aligned_cols=284  Identities=17%  Similarity=0.179  Sum_probs=211.3

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC  102 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l  102 (459)
                      -.+++++|++.+... ..........+++|++|.+.++...           .+...   ....++ +|++|+++++   
T Consensus        30 ~~~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~-----------~~~~~---~~~~l~-~L~~L~L~~n---   90 (477)
T 2id5_A           30 IPTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS-----------AVEPG---AFNNLF-NLRTLGLRSN---   90 (477)
T ss_dssp             CCTTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCC-----------EECTT---TTTTCT-TCCEEECCSS---
T ss_pred             CCCCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccC-----------EeChh---hhhCCc-cCCEEECCCC---
Confidence            356899999987643 3333334567899999999977422           11111   112344 8999999985   


Q ss_pred             CCCCccc---------eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCc
Q 039619          103 YEPLTIP---------VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLE  170 (459)
Q Consensus       103 ~~l~~lp---------L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~  170 (459)
                       .+..+|         |++|+++++ .++.+ +.....+++|++|+++++ .+..++  ....+ ++|++|+++++ .++
T Consensus        91 -~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~  165 (477)
T 2id5_A           91 -RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGL-NSLEQLTLEKC-NLT  165 (477)
T ss_dssp             -CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTC-TTCCEEEEESC-CCS
T ss_pred             -cCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCC-ccceeChhhccCC-CCCCEEECCCC-cCc
Confidence             444444         999999885 45554 434566679999999985 566664  33567 89999999996 566


Q ss_pred             ccc-ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCC
Q 039619          171 SIA-EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERG  248 (459)
Q Consensus       171 ~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~  248 (459)
                      .++ ..+..+++|+.|+++++......+..+..+++|+.|++++|+.+..++.. ....+|++|+++++.++... ..  
T Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~--  242 (477)
T 2id5_A          166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YL--  242 (477)
T ss_dssp             SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HH--
T ss_pred             ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HH--
Confidence            665 45788999999999998443333457889999999999999988888765 33569999999998887433 23  


Q ss_pred             CCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCC
Q 039619          249 PGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPD  326 (459)
Q Consensus       249 ~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~  326 (459)
                       .+..+++|+.|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..+++|++|++++| .++.++.
T Consensus       243 -~~~~l~~L~~L~Ls~---n~l~~~~~~~---~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  313 (477)
T 2id5_A          243 -AVRHLVYLRFLNLSY---NPISTIEGSM---LHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE  313 (477)
T ss_dssp             -HHTTCTTCCEEECCS---SCCCEECTTS---CTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred             -HhcCccccCeeECCC---CcCCccChhh---ccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence             578899999999998   4566666532   13678999999999 6788775  7889999999999995 7888886


Q ss_pred             CCC--CCCcceEEeeCCc
Q 039619          327 NGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       327 ~~l--~~sL~~L~i~~c~  342 (459)
                      ..+  +++|++|++++++
T Consensus       314 ~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          314 SVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             GGBSCGGGCCEEECCSSC
T ss_pred             hHcCCCcccCEEEccCCC
Confidence            433  6899999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=3.1e-20  Score=181.64  Aligned_cols=208  Identities=18%  Similarity=0.167  Sum_probs=85.8

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |++|++++|..+..++ ....+++|++|++++| .+..++....+ ++|++|++++| .+..++. +..+++|+.|++++
T Consensus       134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES-KVKDVTPIANL-TDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYV  208 (347)
T ss_dssp             CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGC-TTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred             eeEEECCCCCCccccc-chhhCCCCcEEEecCC-CcCCchhhccC-CCCCEEEccCC-ccccccc-ccCCCccceeeccc
Confidence            4555554444444333 2233334555555443 23333323333 44555555443 2333332 34444555555544


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG  269 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~  269 (459)
                      + .+..++. +..+++|++|++++| .+..++....+++|++|+++++.+....      .+..+++|++|++++  | .
T Consensus       209 n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~--n-~  276 (347)
T 4fmz_A          209 N-QITDITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQISDIN------AVKDLTKLKMLNVGS--N-Q  276 (347)
T ss_dssp             S-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCS--S-C
T ss_pred             C-CCCCCch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCccCCCh------hHhcCCCcCEEEccC--C-c
Confidence            4 2222222 344445555555443 2333332233444555555444443322      334444555555544  1 3


Q ss_pred             ceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619          270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC  341 (459)
Q Consensus       270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c  341 (459)
                      +..++..     ..+++|++|++++| .+...+  .+..+++|++|++++|+ ++.++....+++|++|++++|
T Consensus       277 l~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          277 ISDISVL-----NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQ  343 (347)
T ss_dssp             CCCCGGG-----GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC
T ss_pred             cCCChhh-----cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhh
Confidence            3333211     13344555555542 333322  33444455555554432 333322112344555554444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=8.3e-20  Score=177.37  Aligned_cols=214  Identities=23%  Similarity=0.296  Sum_probs=153.8

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  188 (459)
                      +++|++++ ..++.+|.....+++|++|+++++ .+..+|. .+.+ ++|++|+++++ .+..+|..+..+++|++|+++
T Consensus        83 l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l-~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           83 RVALELRS-VPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQF-AGLETLTLARN-PLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             CCEEEEES-SCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGG-TTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred             eeEEEccC-CCchhcChhhhhCCCCCEEECCCC-CccchhHHHhcc-CCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence            55666655 445566655555668888888774 4556663 3566 78888888875 556777778888888888888


Q ss_pred             cccCcccCcccCCC---------CCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccC
Q 039619          189 ICQNLKALPNGLRN---------LTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVR  258 (459)
Q Consensus       189 ~c~~l~~lp~~l~~---------l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~  258 (459)
                      +|..+..+|..+..         +++|++|++++| .++.+|.. +.+++|++|+++++.+...  +.   .+..+++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l--~~---~l~~l~~L~  232 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSAL--GP---AIHHLPKLE  232 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCC--CG---GGGGCTTCC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcC--ch---hhccCCCCC
Confidence            87777777766543         778888888775 45566654 4467888888888776643  22   567888888


Q ss_pred             EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceE
Q 039619          259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRL  336 (459)
Q Consensus       259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L  336 (459)
                      +|++++  |.....+|..++    .+++|++|++++|+..+.+| .+..+++|++|++++|+.++.+|.. +-+++|+.+
T Consensus       233 ~L~Ls~--n~~~~~~p~~~~----~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          233 ELDLRG--CTALRNYPPIFG----GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             EEECTT--CTTCCBCCCCTT----CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             EEECcC--CcchhhhHHHhc----CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            888888  677777777653    67788888888888888888 7888888888888888888888862 125667776


Q ss_pred             Eee
Q 039619          337 EIY  339 (459)
Q Consensus       337 ~i~  339 (459)
                      ++.
T Consensus       307 ~l~  309 (328)
T 4fcg_A          307 LVP  309 (328)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=2.5e-20  Score=201.41  Aligned_cols=176  Identities=19%  Similarity=0.173  Sum_probs=82.2

Q ss_pred             cccceEEeecccCCccccccCCCCC-cccEEeeccccCcccCcccCCC--CCCccEEeeccCCCCccccCC-CCCCCccE
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNT-SLETMEIFICQNLKALPNGLRN--LTSLQYLLIQDCPTIGSFTAN-CFPTNLAS  231 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~  231 (459)
                      ++|++|++++|.....+|..+..++ +|++|++++|.....+|..+..  +++|++|++++|.....+|.. ..+++|++
T Consensus       343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  422 (768)
T 3rgz_A          343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS  422 (768)
T ss_dssp             TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred             CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence            4444444444322223333333333 4444444443222223333322  444555555444322233322 33455555


Q ss_pred             EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-ccC-CCCCCCC
Q 039619          232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-RIS-SIENLTS  309 (459)
Q Consensus       232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~l~~  309 (459)
                      |+++++.+.+.. +.   .+..+++|+.|++++  |.-...+|..+    ..+++|++|+++++ .+. .+| .+..+++
T Consensus       423 L~Ls~N~l~~~~-p~---~l~~l~~L~~L~L~~--n~l~~~~p~~~----~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          423 LHLSFNYLSGTI-PS---SLGSLSKLRDLKLWL--NMLEGEIPQEL----MYVKTLETLILDFN-DLTGEIPSGLSNCTN  491 (768)
T ss_dssp             EECCSSEEESCC-CG---GGGGCTTCCEEECCS--SCCCSCCCGGG----GGCTTCCEEECCSS-CCCSCCCGGGGGCTT
T ss_pred             EECcCCcccCcc-cH---HHhcCCCCCEEECCC--CcccCcCCHHH----cCCCCceEEEecCC-cccCcCCHHHhcCCC
Confidence            555555554333 33   455556666666655  33333444433    24556666666663 333 445 5566666


Q ss_pred             CCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCc
Q 039619          310 FESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCP  342 (459)
Q Consensus       310 L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~  342 (459)
                      |++|++++|.-...+|.. +-+++|++|++++|.
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS  525 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence            666666665433344431 124566666666664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.6e-19  Score=175.38  Aligned_cols=210  Identities=19%  Similarity=0.250  Sum_probs=177.8

Q ss_pred             CCcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec-cccccccccc
Q 039619           89 VTLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS-LRGNLSKALK  159 (459)
Q Consensus        89 ~~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~-~~~~lp~~L~  159 (459)
                      .++++|+++++    .+..+|        |++|++++ +.++.+|.....+++|++|+++++ .+..+| ..+.+ ++|+
T Consensus        81 ~~l~~L~L~~n----~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l-~~L~  153 (328)
T 4fcg_A           81 PGRVALELRSV----PLPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARN-PLRALPASIASL-NRLR  153 (328)
T ss_dssp             TTCCEEEEESS----CCSSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGC-TTCC
T ss_pred             cceeEEEccCC----CchhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcC-cCCC
Confidence            48899999994    566666        99999988 456688877777789999999995 666777 33677 8999


Q ss_pred             eEEeecccCCccccccCCC---------CCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCc
Q 039619          160 HLYIISCSNLESIAEGLDD---------NTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNL  229 (459)
Q Consensus       160 ~L~l~~c~~l~~lp~~l~~---------l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L  229 (459)
                      +|++++|..+..+|..+..         +++|++|++++| .+..+|..+..+++|++|++++|. +..+|.. ..+++|
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L  231 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKL  231 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTC
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCC
Confidence            9999999888888887764         999999999998 677899899999999999999864 5566654 557899


Q ss_pred             cEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCC
Q 039619          230 ASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLT  308 (459)
Q Consensus       230 ~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~  308 (459)
                      ++|+++++.+.... +.   .+..+++|++|++++  |.....+|..+    ..+++|++|++++|+.++.+| .+.+++
T Consensus       232 ~~L~Ls~n~~~~~~-p~---~~~~l~~L~~L~L~~--n~~~~~~p~~~----~~l~~L~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          232 EELDLRGCTALRNY-PP---IFGGRAPLKRLILKD--CSNLLTLPLDI----HRLTQLEKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             CEEECTTCTTCCBC-CC---CTTCCCCCCEEECTT--CTTCCBCCTTG----GGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred             CEEECcCCcchhhh-HH---HhcCCCCCCEEECCC--CCchhhcchhh----hcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence            99999997776555 55   788999999999999  78888999876    378999999999999999999 999999


Q ss_pred             CCCEEeccC
Q 039619          309 SFESLQLCC  317 (459)
Q Consensus       309 ~L~~L~l~~  317 (459)
                      +|+.+++..
T Consensus       302 ~L~~l~l~~  310 (328)
T 4fcg_A          302 ANCIILVPP  310 (328)
T ss_dssp             TTCEEECCG
T ss_pred             CceEEeCCH
Confidence            999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=5.8e-19  Score=179.01  Aligned_cols=286  Identities=15%  Similarity=0.072  Sum_probs=140.7

Q ss_pred             CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC-
Q 039619           24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC-  102 (459)
Q Consensus        24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l-  102 (459)
                      .++|++|++.+... ..........+++|+.|.+.++....          .++...   ...+ ++|++|+++++.-. 
T Consensus        29 ~~~l~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~----------~i~~~~---~~~l-~~L~~L~Ls~n~l~~   93 (455)
T 3v47_A           29 PAHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGL----------VIRNNT---FRGL-SSLIILKLDYNQFLQ   93 (455)
T ss_dssp             CTTCCEEECCSSCC-CEECTTTTSSCTTCCEEECCCCSTTC----------EECTTT---TTTC-TTCCEEECTTCTTCE
T ss_pred             CCccCEEEecCCcc-CcCChhHhccCccccEEECcCCcccc----------eECccc---cccc-ccCCEEeCCCCccCc
Confidence            36799999987644 33333345578899999998774320          111111   1223 37888888775210 


Q ss_pred             ---CCCCccc-eeEEEEecCCCCcc-ccCC--ccccccCcEEEeecCCCceee-cc--ccccccccceEEeecccCCccc
Q 039619          103 ---YEPLTIP-VYQLQIIPCPSLTS-LWSK--SELPATLENIYVDRCSKLAFL-SL--RGNLSKALKHLYIISCSNLESI  172 (459)
Q Consensus       103 ---~~l~~lp-L~~L~l~~c~~l~~-lp~~--~~~~~~L~~L~l~~c~~l~~l-~~--~~~lp~~L~~L~l~~c~~l~~l  172 (459)
                         ..+..++ |++|++++|. ++. ++..  ...+++|++|+++++ .+..+ |.  ...+ ++|++|+++++......
T Consensus        94 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A           94 LETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNM-RRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGC-TTCCEEECTTCCBSCCC
T ss_pred             cChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCC-CcccEEeCCCCcccccC
Confidence               0112222 8888887753 432 3322  344567888888775 34444 32  3456 77888888775432222


Q ss_pred             cccCCCC--CcccEEeeccccCcccCcc---------cCCCCCCccEEeeccCCC-------------------------
Q 039619          173 AEGLDDN--TSLETMEIFICQNLKALPN---------GLRNLTSLQYLLIQDCPT-------------------------  216 (459)
Q Consensus       173 p~~l~~l--~~L~~L~l~~c~~l~~lp~---------~l~~l~~L~~L~l~~c~~-------------------------  216 (459)
                      +..+..+  .+|+.|+++++. +..++.         .+..+++|++|++++|..                         
T Consensus       171 ~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          171 EEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             TTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             hhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            3333333  334444444331 111111         011223333333333311                         


Q ss_pred             --Ccc------ccC---C----CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceec-CCCCCCC
Q 039619          217 --IGS------FTA---N----CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSF-PPEKDTG  280 (459)
Q Consensus       217 --l~~------lp~---~----~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l-~~~~~~~  280 (459)
                        ...      ++.   .    ...++|++|+++++.+.... +.   .+..+++|++|++++   +.+..+ |..+   
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~Ls~---n~l~~~~~~~~---  319 (455)
T 3v47_A          250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-KS---VFSHFTDLEQLTLAQ---NEINKIDDNAF---  319 (455)
T ss_dssp             TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC-TT---TTTTCTTCCEEECTT---SCCCEECTTTT---
T ss_pred             cccccccchhhhccCcccccccccccCceEEEecCccccccc-hh---hcccCCCCCEEECCC---CcccccChhHh---
Confidence              100      000   0    01245666666665554433 33   455666666666665   233333 2222   


Q ss_pred             ccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCC
Q 039619          281 KALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGC  341 (459)
Q Consensus       281 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c  341 (459)
                       ..+++|++|++++ +.++.++  .+..+++|++|++++| .++.++...+  +++|++|+++++
T Consensus       320 -~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          320 -WGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             -TTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -cCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence             1445666666666 4555553  4555666666666664 3444422212  456666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=7.4e-19  Score=179.00  Aligned_cols=98  Identities=22%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID  235 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~  235 (459)
                      ++|++|+++++ .+..++ .+..+++|++|++++| .+..++. ++.+++|++|++++| .++.++....+++|++|+++
T Consensus       177 ~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          177 TTLERLDISSN-KVSDIS-VLAKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             TTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECC
T ss_pred             CCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCC-ccccccc-ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECC
Confidence            44444444443 233332 2344444444444444 2222221 333444444444443 23333222234444444444


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      ++.+....      .+..+++|++|++++
T Consensus       252 ~n~l~~~~------~~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          252 NNQISNLA------PLSGLTKLTELKLGA  274 (466)
T ss_dssp             SSCCCCCG------GGTTCTTCSEEECCS
T ss_pred             CCccccch------hhhcCCCCCEEECCC
Confidence            44443322      234444444444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=6.2e-19  Score=186.44  Aligned_cols=319  Identities=12%  Similarity=0.039  Sum_probs=219.4

Q ss_pred             CCCCCCCCeEeccCCCccCc-----c-----------cccCCc--cCCccceeeccccccccccCCCCCCCcccCCCCCC
Q 039619           21 SSRFPKRQRSSQQDLDESEY-----S-----------EEVEEE--EFPTVQRQARSQETRAADKGGGSKGNKTADPGKRS   82 (459)
Q Consensus        21 ~~~f~~L~~L~l~~~~~~~~-----~-----------~~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   82 (459)
                      ...+++|++|++.+..-...     |           ......  .+++|+.|.+.+|....          .++    .
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----------~~p----~  267 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----------KLP----T  267 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----------SCC----T
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----------cCh----H
Confidence            34689999999988763321     1           223344  78999999999885331          011    1


Q ss_pred             CCCCCCCCcCceEEeCCCCCCCCCc--c-------------c-eeEEEEecCCCCccccC--CccccccCcEEEeecCCC
Q 039619           83 NNGPVSVTLKDPEVLDCPVCYEPLT--I-------------P-VYQLQIIPCPSLTSLWS--KSELPATLENIYVDRCSK  144 (459)
Q Consensus        83 ~~~~lp~~L~~L~l~~c~~l~~l~~--l-------------p-L~~L~l~~c~~l~~lp~--~~~~~~~L~~L~l~~c~~  144 (459)
                      ..+.++ +|++|++++|.   .+..  +             + |++|++++| .++.+|.  ....+++|++|+++++ .
T Consensus       268 ~l~~l~-~L~~L~Ls~n~---~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~  341 (636)
T 4eco_A          268 FLKALP-EMQLINVACNR---GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-Q  341 (636)
T ss_dssp             TTTTCS-SCCEEECTTCT---TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-C
T ss_pred             HHhcCC-CCCEEECcCCC---CCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-c
Confidence            223444 89999999962   1332  2             4 899999884 5668886  5667779999999986 4


Q ss_pred             ce-eeccccccccccceEEeecccCCccccccCCCCCc-ccEEeeccccCcccCcccCCCCC--CccEEeeccCCCCccc
Q 039619          145 LA-FLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTS-LETMEIFICQNLKALPNGLRNLT--SLQYLLIQDCPTIGSF  220 (459)
Q Consensus       145 l~-~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~lp~~l~~l~--~L~~L~l~~c~~l~~l  220 (459)
                      +. .+|..+.+ ++|++|+++++ .+..+|..+..+++ |++|+++++ .+..+|..+..++  +|+.|++++|......
T Consensus       342 l~g~ip~~~~l-~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          342 LEGKLPAFGSE-IKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             CEEECCCCEEE-EEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred             CccchhhhCCC-CCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence            55 88855677 89999999986 56688989999999 999999998 4668888776654  8999999987644434


Q ss_pred             cCC-C-------CCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCc----cCCCCcc
Q 039619          221 TAN-C-------FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGK----ALPASLK  288 (459)
Q Consensus       221 p~~-~-------~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~----~~~~~L~  288 (459)
                      |.. .       ..++|++|+++++.+.... ..   .+..+++|++|++++   +.+..+|.......    ..+++|+
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~---~~~~l~~L~~L~Ls~---N~l~~i~~~~~~~~~~~~~~l~~L~  491 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQISKFP-KE---LFSTGSPLSSINLMG---NMLTEIPKNSLKDENENFKNTYLLT  491 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-TH---HHHTTCCCSEEECCS---SCCSBCCSSSSEETTEECTTGGGCC
T ss_pred             hhhhcccccccccCCCCCEEECcCCccCcCC-HH---HHccCCCCCEEECCC---CCCCCcCHHHhccccccccccCCcc
Confidence            332 2       3568999999998877432 21   345689999999998   46668887541000    0012899


Q ss_pred             eEEeecCCCCCccC-CCC--CCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCchhHHhh-hcCcCCccccccCCC
Q 039619          289 HLSIWNFPNLERIS-SIE--NLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPLIEERF-EKDKGQYWSLIADIP  363 (459)
Q Consensus       289 ~L~l~~c~~l~~l~-~l~--~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~~~-~~~~~~~~~~i~~i~  363 (459)
                      +|++++ +.++.+| .+.  .+++|++|++++| .++.+|.. .-+++|++|+++++..+..-. ..........+.++.
T Consensus       492 ~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~  569 (636)
T 4eco_A          492 SIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT  569 (636)
T ss_dssp             EEECCS-SCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred             EEECcC-CcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence            999998 6888888 665  8999999999985 56668763 227899999997654221100 000111233455666


Q ss_pred             eEEeCcee
Q 039619          364 CVRIDCHY  371 (459)
Q Consensus       364 ~l~~~~~~  371 (459)
                      .+.+.++.
T Consensus       570 ~L~Ls~N~  577 (636)
T 4eco_A          570 QLQIGSND  577 (636)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            67666553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=9e-19  Score=185.19  Aligned_cols=295  Identities=13%  Similarity=0.128  Sum_probs=162.3

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccc----cCCC-------CCCCcccCCCCCC-----C---
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAAD----KGGG-------SKGNKTADPGKRS-----N---   83 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~-------~~~~~~~~~~~~~-----~---   83 (459)
                      .+++|++|++.++....... .....+++|+.|.+.++..+..    ..++       ....+.++.....     .   
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence            57889999998875443322 3345688999999988752210    0000       0111111111110     0   


Q ss_pred             CCCCCCCcCceEEeCCCCCCCCC-ccc-------eeEEEEecCCCCccccCCcccccc-CcEEEeecCCCceeeccc-cc
Q 039619           84 NGPVSVTLKDPEVLDCPVCYEPL-TIP-------VYQLQIIPCPSLTSLWSKSELPAT-LENIYVDRCSKLAFLSLR-GN  153 (459)
Q Consensus        84 ~~~lp~~L~~L~l~~c~~l~~l~-~lp-------L~~L~l~~c~~l~~lp~~~~~~~~-L~~L~l~~c~~l~~l~~~-~~  153 (459)
                      .+.++ +|++|+++++    .+. .+|       |++|++++ +.++.+|.....+++ |++|+++++ .++.+|.. ..
T Consensus       326 l~~l~-~L~~L~L~~N----~l~g~ip~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~  398 (636)
T 4eco_A          326 LQKMK-KLGMLECLYN----QLEGKLPAFGSEIKLASLNLAY-NQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDA  398 (636)
T ss_dssp             HTTCT-TCCEEECCSC----CCEEECCCCEEEEEESEEECCS-SEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCT
T ss_pred             hccCC-CCCEEeCcCC----cCccchhhhCCCCCCCEEECCC-CccccccHhhhhhcccCcEEEccCC-cCcccchhhhh
Confidence            11222 5666666664    233 333       66666665 345566654444445 666666664 34455522 11


Q ss_pred             --cccccceEEeecccCCccccccCC-------CCCcccEEeeccccCcccCcccC-CCCCCccEEeeccCCCCccccCC
Q 039619          154 --LSKALKHLYIISCSNLESIAEGLD-------DNTSLETMEIFICQNLKALPNGL-RNLTSLQYLLIQDCPTIGSFTAN  223 (459)
Q Consensus       154 --lp~~L~~L~l~~c~~l~~lp~~l~-------~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~~  223 (459)
                        + ++|++|+++++.....+|..+.       .+++|++|++++| .+..+|..+ ..+++|++|++++| .+..+|..
T Consensus       399 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~  475 (636)
T 4eco_A          399 KSV-SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKN  475 (636)
T ss_dssp             TCS-SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSS
T ss_pred             ccc-CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHH
Confidence              2 3566677766544444455555       5566777777665 444555443 34667777777664 34455543


Q ss_pred             CC--CC-------CccEEEEecCcccccccccCCCCCC--CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEe
Q 039619          224 CF--PT-------NLASVCIDYEKIYKPLILERGPGLH--RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSI  292 (459)
Q Consensus       224 ~~--~~-------~L~~L~l~~~~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l  292 (459)
                      .+  ..       +|++|+++++.++. + +.   .+.  .+++|++|++++   +.+..+|...    ..+++|+.|++
T Consensus       476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l-p~---~~~~~~l~~L~~L~Ls~---N~l~~ip~~~----~~l~~L~~L~L  543 (636)
T 4eco_A          476 SLKDENENFKNTYLLTSIDLRFNKLTK-L-SD---DFRATTLPYLVGIDLSY---NSFSKFPTQP----LNSSTLKGFGI  543 (636)
T ss_dssp             SSEETTEECTTGGGCCEEECCSSCCCB-C-CG---GGSTTTCTTCCEEECCS---SCCSSCCCGG----GGCSSCCEEEC
T ss_pred             HhccccccccccCCccEEECcCCcCCc-c-Ch---hhhhccCCCcCEEECCC---CCCCCcChhh----hcCCCCCEEEC
Confidence            22  11       67777777766652 2 22   333  677777777776   3444566654    25667777777


Q ss_pred             ec------CCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          293 WN------FPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       293 ~~------c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      ++      +.-...+| .+..+++|++|++++| .++.+|.. +.++|+.|++++|+
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNP  598 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCT
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCC
Confidence            43      22234555 6666777777777764 34666653 34677777777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=1.1e-18  Score=188.85  Aligned_cols=322  Identities=13%  Similarity=0.016  Sum_probs=216.7

Q ss_pred             CCCCCCCCeEeccCCCccCc-----c-----------cccCCc--cCCccceeeccccccccccCCCCCCCcccCCCCCC
Q 039619           21 SSRFPKRQRSSQQDLDESEY-----S-----------EEVEEE--EFPTVQRQARSQETRAADKGGGSKGNKTADPGKRS   82 (459)
Q Consensus        21 ~~~f~~L~~L~l~~~~~~~~-----~-----------~~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~   82 (459)
                      ...+++|++|++.+..-...     |           .+....  .+++|+.|.+.+|....          .++    .
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----------~iP----~  509 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----------QLP----D  509 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----------SCC----G
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----------cCh----H
Confidence            34688999999988754331     0           122333  68999999998875321          000    1


Q ss_pred             CCCCCCCCcCceEEeCCCCCC-------------CCCccc-eeEEEEecCCCCccccC--CccccccCcEEEeecCCCce
Q 039619           83 NNGPVSVTLKDPEVLDCPVCY-------------EPLTIP-VYQLQIIPCPSLTSLWS--KSELPATLENIYVDRCSKLA  146 (459)
Q Consensus        83 ~~~~lp~~L~~L~l~~c~~l~-------------~l~~lp-L~~L~l~~c~~l~~lp~--~~~~~~~L~~L~l~~c~~l~  146 (459)
                      ..+.++ +|++|+++++..+.             .+..+| |++|++++ +.++.+|.  ....+++|++|+++++ .+.
T Consensus       510 ~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~  586 (876)
T 4ecn_A          510 FLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHN-KVR  586 (876)
T ss_dssp             GGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTS-CCC
T ss_pred             HHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCC-Ccc
Confidence            122344 89999999963111             111233 89999988 45668886  5666779999999985 566


Q ss_pred             eeccccccccccceEEeecccCCccccccCCCCCc-ccEEeeccccCcccCcccCCCCCC--ccEEeeccCCCCccccCC
Q 039619          147 FLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTS-LETMEIFICQNLKALPNGLRNLTS--LQYLLIQDCPTIGSFTAN  223 (459)
Q Consensus       147 ~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~lp~~l~~l~~--L~~L~l~~c~~l~~lp~~  223 (459)
                      .+|..+.+ ++|++|+++++ .+..+|..+..+++ |+.|++++| .+..+|..+..++.  |+.|++++|.....+|..
T Consensus       587 ~lp~~~~L-~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          587 HLEAFGTN-VKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             BCCCCCTT-SEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             cchhhcCC-CcceEEECcCC-ccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence            88866778 89999999986 46688988999999 999999998 46688887766654  999999987543333321


Q ss_pred             ----C--CCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCc----cCCCCcceEEee
Q 039619          224 ----C--FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGK----ALPASLKHLSIW  293 (459)
Q Consensus       224 ----~--~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~----~~~~~L~~L~l~  293 (459)
                          .  ..++|+.|+++++.+...  +.  +.+..+++|+.|++++   +.+..+|.......    ..+++|+.|+++
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~~l--p~--~~~~~l~~L~~L~Ls~---N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls  736 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQKF--PT--ELFATGSPISTIILSN---NLMTSIPENSLKPKDGNYKNTYLLTTIDLR  736 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCCSC--CH--HHHHTTCCCSEEECCS---CCCSCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred             hhhhccccCCCcCEEEccCCcCCcc--CH--HHHccCCCCCEEECCC---CcCCccChHHhccccccccccCCccEEECC
Confidence                1  245899999999887733  22  1334789999999998   46668887542000    011289999999


Q ss_pred             cCCCCCccC-CCC--CCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCchhHHhh-hcCcCCccccccCCCeEEeC
Q 039619          294 NFPNLERIS-SIE--NLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPLIEERF-EKDKGQYWSLIADIPCVRID  368 (459)
Q Consensus       294 ~c~~l~~l~-~l~--~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~~~-~~~~~~~~~~i~~i~~l~~~  368 (459)
                      + +.++.+| .+.  .+++|+.|++++| .+..+|.. .-+++|+.|++++++.+...- .......+..+.++..+.+.
T Consensus       737 ~-N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          737 F-NKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             S-SCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             C-CCCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence            8 6888888 665  8999999999985 66678753 226899999998865222110 00011123345566666666


Q ss_pred             cee
Q 039619          369 CHY  371 (459)
Q Consensus       369 ~~~  371 (459)
                      +|.
T Consensus       815 ~N~  817 (876)
T 4ecn_A          815 SND  817 (876)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=3.7e-18  Score=169.73  Aligned_cols=297  Identities=12%  Similarity=0.017  Sum_probs=189.8

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC  102 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l  102 (459)
                      .++++++|++.+... ..........+++|+.|.+.++...           .+...   ....+ ++|++|+++++.--
T Consensus        43 ~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~-----------~~~~~---~~~~l-~~L~~L~L~~n~l~  106 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE-----------EIDTY---AFAYA-HTIQKLYMGFNAIR  106 (390)
T ss_dssp             GGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCC-----------EECTT---TTTTC-TTCCEEECCSSCCC
T ss_pred             ccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCccc-----------ccChh---hccCC-CCcCEEECCCCCCC
Confidence            468899999877543 3333222346889999999877532           11111   11233 48999999986310


Q ss_pred             ----CCCCccc-eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccccc
Q 039619          103 ----YEPLTIP-VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAE  174 (459)
Q Consensus       103 ----~~l~~lp-L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~  174 (459)
                          ..+..++ |++|++++ +.++.+|... ..+++|++|+++++ .+..++.  ...+ ++|++|+++++ .++.++ 
T Consensus       107 ~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~-  181 (390)
T 3o6n_A          107 YLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQAT-TSLQNLQLSSN-RLTHVD-  181 (390)
T ss_dssp             CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSC-TTCCEEECCSS-CCSBCC-
T ss_pred             cCCHHHhcCCCCCCEEECCC-CccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCC-CCCCEEECCCC-cCCccc-
Confidence                0122233 99999988 4677887543 55679999999885 5666542  3567 89999999885 555553 


Q ss_pred             cCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCC
Q 039619          175 GLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRF  254 (459)
Q Consensus       175 ~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l  254 (459)
                       +..+++|+.|+++++ .+..+    ...++|++|+++++ .+..++. ..+++|++|+++++.++...      .+..+
T Consensus       182 -~~~l~~L~~L~l~~n-~l~~~----~~~~~L~~L~l~~n-~l~~~~~-~~~~~L~~L~l~~n~l~~~~------~l~~l  247 (390)
T 3o6n_A          182 -LSLIPSLFHANVSYN-LLSTL----AIPIAVEELDASHN-SINVVRG-PVNVELTILKLQHNNLTDTA------WLLNY  247 (390)
T ss_dssp             -GGGCTTCSEEECCSS-CCSEE----ECCSSCSEEECCSS-CCCEEEC-CCCSSCCEEECCSSCCCCCG------GGGGC
T ss_pred             -cccccccceeecccc-ccccc----CCCCcceEEECCCC-eeeeccc-cccccccEEECCCCCCcccH------HHcCC
Confidence             556788888888876 44433    23457888888775 4555543 34577888888887776544      56777


Q ss_pred             CccCEEEEeCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCC
Q 039619          255 TSVRLLTLFGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPT  331 (459)
Q Consensus       255 ~~L~~L~l~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~  331 (459)
                      ++|++|++++  + .+..+ |..+    ..+++|++|++++ +.++.++ ....+++|++|++++| .++.+|.. .-++
T Consensus       248 ~~L~~L~Ls~--n-~l~~~~~~~~----~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~  318 (390)
T 3o6n_A          248 PGLVEVDLSY--N-ELEKIMYHPF----VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD  318 (390)
T ss_dssp             TTCSEEECCS--S-CCCEEESGGG----TTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred             CCccEEECCC--C-cCCCcChhHc----cccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccC
Confidence            8888888877  3 44333 4333    2567788888887 6777777 5667778888888775 56666542 1156


Q ss_pred             CcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619          332 SLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY  371 (459)
Q Consensus       332 sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~  371 (459)
                      +|++|++++|+- ...       .......+..+.+.++.
T Consensus       319 ~L~~L~L~~N~i-~~~-------~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          319 RLENLYLDHNSI-VTL-------KLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             TCSEEECCSSCC-CCC-------CCCTTCCCSEEECCSSC
T ss_pred             cCCEEECCCCcc-cee-------CchhhccCCEEEcCCCC
Confidence            788888877752 111       12334466667776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=3.1e-18  Score=174.38  Aligned_cols=313  Identities=15%  Similarity=0.100  Sum_probs=201.4

Q ss_pred             CCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccC-CCCCCCcccCCCCC-----CCCCCCCCCcCce
Q 039619           21 SSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKG-GGSKGNKTADPGKR-----SNNGPVSVTLKDP   94 (459)
Q Consensus        21 ~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~lp~~L~~L   94 (459)
                      ...+++|++|++.++...... .  ...+++|+.|.+.++....... ......+.++....     .....+ ++|++|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l-~~L~~L  139 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDIT-P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL-TNLNRL  139 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTC-TTCSEE
T ss_pred             hhhhcCCCEEECCCCccCCch-h--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCC-CCCCEE
Confidence            345788999998876543222 2  4467888888887765321110 01111111111110     001122 256666


Q ss_pred             EEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeeccc
Q 039619           95 EVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCS  167 (459)
Q Consensus        95 ~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~  167 (459)
                      ++++|    .+..+|       |++|++.+  .+..++ ....+++|++|+++++ .+..++....+ ++|++|++++| 
T Consensus       140 ~l~~n----~l~~~~~~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l-~~L~~L~l~~n-  209 (466)
T 1o6v_A          140 ELSSN----TISDISALSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSN-KVSDISVLAKL-TNLESLIATNN-  209 (466)
T ss_dssp             EEEEE----EECCCGGGTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGC-TTCSEEECCSS-
T ss_pred             ECCCC----ccCCChhhccCCcccEeecCC--cccCch-hhccCCCCCEEECcCC-cCCCChhhccC-CCCCEEEecCC-
Confidence            66553    122222       66666642  233333 2344568888888885 46666656677 89999999986 


Q ss_pred             CCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccC
Q 039619          168 NLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILER  247 (459)
Q Consensus       168 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~  247 (459)
                      .+..++. ++.+++|++|++++| .+..++ .+..+++|+.|++++|. +..++....+++|++|+++++.+....    
T Consensus       210 ~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~----  281 (466)
T 1o6v_A          210 QISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNIS----  281 (466)
T ss_dssp             CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCG----
T ss_pred             ccccccc-ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCccc----
Confidence            4555543 677899999999997 566664 57788999999998864 555554556789999999998887654    


Q ss_pred             CCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCC
Q 039619          248 GPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDN  327 (459)
Q Consensus       248 ~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~  327 (459)
                        .+..+++|+.|++++   +.+..++.-     ..+++|+.|++++ +.+..++.+..+++|++|++++| .+..++..
T Consensus       282 --~~~~l~~L~~L~L~~---n~l~~~~~~-----~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~l  349 (466)
T 1o6v_A          282 --PLAGLTALTNLELNE---NQLEDISPI-----SNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFYNN-KVSDVSSL  349 (466)
T ss_dssp             --GGTTCTTCSEEECCS---SCCSCCGGG-----GGCTTCSEEECCS-SCCSCCGGGGGCTTCCEEECCSS-CCCCCGGG
T ss_pred             --cccCCCccCeEEcCC---CcccCchhh-----cCCCCCCEEECcC-CcCCCchhhccCccCCEeECCCC-ccCCchhh
Confidence              467899999999998   355555542     2678999999998 56776665678899999999986 66666553


Q ss_pred             CCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCceeeeC
Q 039619          328 GLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVID  374 (459)
Q Consensus       328 ~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~  374 (459)
                      .-+++|+.|++++|..-. ..      ....+.++..+.+.+|....
T Consensus       350 ~~l~~L~~L~l~~n~l~~-~~------~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQISD-LT------PLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG------GGTTCTTCCEEECCCEEEEC
T ss_pred             ccCCCCCEEeCCCCccCc-cc------hhhcCCCCCEEeccCCcccC
Confidence            347899999999885321 11      12344566667777665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=2.9e-18  Score=180.24  Aligned_cols=190  Identities=16%  Similarity=0.077  Sum_probs=80.3

Q ss_pred             cCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccC---cccCCCCCCccEE
Q 039619          133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKAL---PNGLRNLTSLQYL  209 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L  209 (459)
                      +|++|++++|.. +.+|.. .+ ++|++|+++++..+..+  .+..+++|++|+++++ .+..+   |..+..+++|++|
T Consensus       308 ~L~~L~l~~n~l-~~lp~~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L  381 (606)
T 3vq2_A          308 KWQSLSIIRCQL-KQFPTL-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL  381 (606)
T ss_dssp             CCSEEEEESCCC-SSCCCC-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEE
T ss_pred             cCCEEEcccccC-cccccC-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEe
Confidence            444444444322 444422 33 44444444444333222  2333444444444443 22211   3333444455555


Q ss_pred             eeccCCCCccccCC-CCCCCccEEEEecCcccccccc-cCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCc
Q 039619          210 LIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLIL-ERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASL  287 (459)
Q Consensus       210 ~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L  287 (459)
                      ++++|. +..+|.. ..+++|++|+++++.+.... + .   .+..+++|++|++++  |......|..+    ..+++|
T Consensus       382 ~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~---~~~~l~~L~~L~l~~--n~l~~~~~~~~----~~l~~L  450 (606)
T 3vq2_A          382 DLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVT-EFS---AFLSLEKLLYLDISY--TNTKIDFDGIF----LGLTSL  450 (606)
T ss_dssp             ECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTT-TTT---TTTTCTTCCEEECTT--SCCEECCTTTT----TTCTTC
T ss_pred             ECCCCc-cccchhhccCCCCCCeeECCCCccCCcc-Chh---hhhccccCCEEECcC--CCCCccchhhh----cCCCCC
Confidence            554432 3333322 23455555555554444322 1 1   344555555555555  23222233322    134455


Q ss_pred             ceEEeecCCCCCc--cC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCC
Q 039619          288 KHLSIWNFPNLER--IS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGC  341 (459)
Q Consensus       288 ~~L~l~~c~~l~~--l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c  341 (459)
                      ++|++++ +.+..  +| .+..+++|++|++++| .++.++...+  +++|++|++++|
T Consensus       451 ~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          451 NTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             CEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCC-CcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC
Confidence            5555555 23332  33 4455555555555554 2333322111  345555555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=4.9e-18  Score=183.79  Aligned_cols=296  Identities=12%  Similarity=0.096  Sum_probs=134.5

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccc----c--------CCCCCCCcccCCCCCC-----C--
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAAD----K--------GGGSKGNKTADPGKRS-----N--   83 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~--------~~~~~~~~~~~~~~~~-----~--   83 (459)
                      .+++|++|++.++....... .....+++|+.|.+.++..+..    .        ......++.++.....     .  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred             cCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence            57899999998875443332 3345688999999988752210    0        0000011111111100     0  


Q ss_pred             -CCCCCCCcCceEEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCcccccc-CcEEEeecCCCceeeccc-cc
Q 039619           84 -NGPVSVTLKDPEVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPAT-LENIYVDRCSKLAFLSLR-GN  153 (459)
Q Consensus        84 -~~~lp~~L~~L~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~-L~~L~l~~c~~l~~l~~~-~~  153 (459)
                       ...++ +|++|+++++    .+..+|       |+.|+++++ .++.+|.....+++ |++|+++++ .+..+|.. ..
T Consensus       568 ~l~~L~-~L~~L~Ls~N----~l~~lp~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~  640 (876)
T 4ecn_A          568 SLQKMV-KLGLLDCVHN----KVRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNA  640 (876)
T ss_dssp             HHTTCT-TCCEEECTTS----CCCBCCCCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCT
T ss_pred             hhhcCC-CCCEEECCCC----CcccchhhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCC-CCCcCchhhhc
Confidence             11111 4555555443    222222       555555442 23344433333334 555555543 23344421 11


Q ss_pred             cc-cccceEEeecccCCcccc---ccCC--CCCcccEEeeccccCcccCcccCC-CCCCccEEeeccCCCCccccCCCC-
Q 039619          154 LS-KALKHLYIISCSNLESIA---EGLD--DNTSLETMEIFICQNLKALPNGLR-NLTSLQYLLIQDCPTIGSFTANCF-  225 (459)
Q Consensus       154 lp-~~L~~L~l~~c~~l~~lp---~~l~--~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~lp~~~~-  225 (459)
                      ++ ++|+.|+++++.....+|   ..+.  .+++|+.|++++| .+..+|..+. .+++|+.|++++| .+..+|...+ 
T Consensus       641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~  718 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLK  718 (876)
T ss_dssp             TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSS
T ss_pred             cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhc
Confidence            10 225555555532211111   1111  2235555555554 3334444332 4555555555553 3444443311 


Q ss_pred             -C-------CCccEEEEecCcccccccccCCCCCC--CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeec-
Q 039619          226 -P-------TNLASVCIDYEKIYKPLILERGPGLH--RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWN-  294 (459)
Q Consensus       226 -~-------~~L~~L~l~~~~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~-  294 (459)
                       .       ++|++|+++++.++. + +.   .+.  .+++|+.|++++   +.+..+|...    ..+++|+.|++++ 
T Consensus       719 ~~~~~l~nl~~L~~L~Ls~N~L~~-l-p~---~l~~~~l~~L~~L~Ls~---N~L~~lp~~l----~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          719 PKDGNYKNTYLLTTIDLRFNKLTS-L-SD---DFRATTLPYLSNMDVSY---NCFSSFPTQP----LNSSQLKAFGIRHQ  786 (876)
T ss_dssp             CTTSCCTTGGGCCEEECCSSCCCC-C-CG---GGSTTTCTTCCEEECCS---SCCSSCCCGG----GGCTTCCEEECCCC
T ss_pred             cccccccccCCccEEECCCCCCcc-c-hH---HhhhccCCCcCEEEeCC---CCCCccchhh----hcCCCCCEEECCCC
Confidence             1       155566665555542 2 22   333  555666666655   2344455444    2455566666544 


Q ss_pred             -----CCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          295 -----FPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       295 -----c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                           +.-...+| .+..+++|++|++++| .+..+|.. +.++|+.|++++|+
T Consensus       787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          787 RDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNP  838 (876)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCT
T ss_pred             CCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCC
Confidence                 22233444 5555566666666554 33555543 33556666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=6.5e-18  Score=172.45  Aligned_cols=212  Identities=15%  Similarity=0.139  Sum_probs=118.5

Q ss_pred             CCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeecc--cccc
Q 039619           87 VSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLSL--RGNL  154 (459)
Q Consensus        87 lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l  154 (459)
                      +|+++++|+++++    .+..++         |++|+++++ .++.+ |.....+++|++|+++++ .++.+|.  ...+
T Consensus        30 ~~~~l~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l  103 (477)
T 2id5_A           30 IPTETRLLDLGKN----RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGL  103 (477)
T ss_dssp             CCTTCSEEECCSS----CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTC
T ss_pred             CCCCCcEEECCCC----ccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCC
Confidence            4556777777663    333332         777777663 44444 333444557777777663 4566652  2455


Q ss_pred             ccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEE
Q 039619          155 SKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASV  232 (459)
Q Consensus       155 p~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L  232 (459)
                       ++|++|+++++......+..+..+++|++|+++++.-....+..+..+++|++|++++| .++.++..  ..+++|+.|
T Consensus       104 -~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          104 -SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVL  181 (477)
T ss_dssp             -TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEE
T ss_pred             -CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEE
Confidence             67777777765333333455666777777777766332233445666777777777665 34444432  345677777


Q ss_pred             EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCC
Q 039619          233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSF  310 (459)
Q Consensus       233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L  310 (459)
                      +++++.+.... +.   .+..+++|++|++++  |..+..++...    ....+|++|++++ +.++.++  .+..+++|
T Consensus       182 ~l~~n~i~~~~-~~---~~~~l~~L~~L~l~~--~~~~~~~~~~~----~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          182 RLRHLNINAIR-DY---SFKRLYRLKVLEISH--WPYLDTMTPNC----LYGLNLTSLSITH-CNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             EEESCCCCEEC-TT---CSCSCTTCCEEEEEC--CTTCCEECTTT----TTTCCCSEEEEES-SCCCSCCHHHHTTCTTC
T ss_pred             eCCCCcCcEeC-hh---hcccCcccceeeCCC--CccccccCccc----ccCccccEEECcC-CcccccCHHHhcCcccc
Confidence            77765554332 22   456666777777766  55555555443    1233555555555 3444444  34445555


Q ss_pred             CEEeccC
Q 039619          311 ESLQLCC  317 (459)
Q Consensus       311 ~~L~l~~  317 (459)
                      ++|++++
T Consensus       251 ~~L~Ls~  257 (477)
T 2id5_A          251 RFLNLSY  257 (477)
T ss_dssp             CEEECCS
T ss_pred             CeeECCC
Confidence            5555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.79  E-value=3.3e-17  Score=172.18  Aligned_cols=175  Identities=16%  Similarity=0.097  Sum_probs=98.7

Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEE
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVC  233 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~  233 (459)
                      ++|++|+++++ .++.+|..+..+++|++|++++|......|..+..+++|++|++++|.....++..  ..+++|++|+
T Consensus       278 ~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          278 SGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             cCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            56666666664 45566666666666666666665322223445556666666666665443344432  3356777777


Q ss_pred             EecCccccccc-ccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCcc-C--CCCCCCC
Q 039619          234 IDYEKIYKPLI-LERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERI-S--SIENLTS  309 (459)
Q Consensus       234 l~~~~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~--~l~~l~~  309 (459)
                      ++++.+..... +   ..+..+++|++|++++  |.-....|..+    ..+++|++|++++ +.+... +  .+..+++
T Consensus       357 l~~n~l~~~~~~~---~~~~~l~~L~~L~l~~--n~l~~~~~~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          357 LSHDDIETSDCCN---LQLRNLSHLQSLNLSY--NEPLSLKTEAF----KECPQLELLDLAF-TRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             CCSSCCCEEEEST---TTTTTCTTCCEEECCS--CSCEEECTTTT----TTCTTCSEEECTT-CCEECCTTCCTTTTCTT
T ss_pred             CCCCccccccCcc---hhcccCCCCCEEECCC--CcCCcCCHHHh----cCCccCCeEECCC-CcCCCcccchhhhCccc
Confidence            77655543210 1   1456677777777776  33222233333    2456777777776 444433 2  3667777


Q ss_pred             CCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          310 FESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       310 L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      |++|++++|. +...+...+  +++|++|++++|.
T Consensus       427 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          427 LKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             CCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             CCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC
Confidence            7777777753 333332222  5677777777775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=7.5e-18  Score=177.15  Aligned_cols=232  Identities=17%  Similarity=0.123  Sum_probs=147.5

Q ss_pred             CcCceEEeCCCCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceee---c-cccccccccc
Q 039619           90 TLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFL---S-LRGNLSKALK  159 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l---~-~~~~lp~~L~  159 (459)
                      +|++|++++|.    ++.+|      |++|+++++..+..++ . ..+++|++|+++++ .+..+   + ....+ ++|+
T Consensus       308 ~L~~L~l~~n~----l~~lp~~~l~~L~~L~l~~n~~~~~~~-~-~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~-~~L~  379 (606)
T 3vq2_A          308 KWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNKGSISFK-K-VALPSLSYLDLSRN-ALSFSGCCSYSDLGT-NSLR  379 (606)
T ss_dssp             CCSEEEEESCC----CSSCCCCCCSSCCEEEEESCSSCEECC-C-CCCTTCCEEECCSS-CEEEEEECCHHHHCC-SCCC
T ss_pred             cCCEEEccccc----CcccccCCCCccceeeccCCcCccchh-h-ccCCCCCEEECcCC-ccCCCcchhhhhccC-Cccc
Confidence            77777777763    23333      7777777765555443 2 23447777777774 44444   2 12455 7778


Q ss_pred             eEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecC
Q 039619          160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYE  237 (459)
Q Consensus       160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~  237 (459)
                      +|++++| .+..+|..+..+++|++|++++|......| ..+..+++|++|++++|......|.. ..+++|++|+++++
T Consensus       380 ~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          380 HLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             EEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            8888775 466677777777888888887774333333 35667778888888776543333332 44677888888777


Q ss_pred             ccccc-ccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCcc-C-CCCCCCCCCEEe
Q 039619          238 KIYKP-LILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERI-S-SIENLTSFESLQ  314 (459)
Q Consensus       238 ~l~~~-~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~  314 (459)
                      .+.+. . +.   .+..+++|++|++++  |.-....|..+    ..+++|++|++++ +.++.+ | .+..+++|++|+
T Consensus       459 ~l~~~~~-~~---~~~~l~~L~~L~Ls~--n~l~~~~~~~~----~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          459 SFKDNTL-SN---VFANTTNLTFLDLSK--CQLEQISWGVF----DTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             EEGGGEE-CS---CCTTCTTCCEEECTT--SCCCEECTTTT----TTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEE
T ss_pred             cCCCcch-HH---hhccCCCCCEEECCC--CcCCccChhhh----cccccCCEEECCC-CcCCCcCHHHccCCCcCCEEE
Confidence            76642 2 33   567778888888877  33333334333    2567788888887 466655 4 677778888888


Q ss_pred             ccCCCCCCcCCCC--CCCCCcceEEeeCCc
Q 039619          315 LCCCPKLQKFPDN--GLPTSLLRLEIYGCP  342 (459)
Q Consensus       315 l~~c~~l~~lp~~--~l~~sL~~L~i~~c~  342 (459)
                      +++| +++.+|..  .++.+|++|+++++|
T Consensus       528 l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          528 CSFN-RIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             CTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             CCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence            8775 46677653  223468888887765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=1.2e-17  Score=173.39  Aligned_cols=38  Identities=5%  Similarity=-0.145  Sum_probs=24.9

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccc
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQET   61 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~   61 (459)
                      -+++|++|++.+... ..........+++|++|.+.++.
T Consensus        24 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~   61 (549)
T 2z81_A           24 LTAAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSR   61 (549)
T ss_dssp             CCTTCCEEECCSSCC-CEECSSTTSSCTTCCEEECTTSC
T ss_pred             CCCCccEEECcCCcc-CccChhhhhcCCcccEEECCCCC
Confidence            356888888887653 22323334567888888888765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=7.8e-18  Score=177.01  Aligned_cols=218  Identities=16%  Similarity=0.109  Sum_probs=93.7

Q ss_pred             eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeec----cccccccccceEEeecccCCccccccCCCCCcccE
Q 039619          110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLS----LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLET  184 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~----~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  184 (459)
                      |++|+++++.....++.. ...+++|++|+++++ .+..++    ....+ ++|++|+++++......|..+..+++|++
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  404 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLEL  404 (606)
T ss_dssp             CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred             CCEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence            555555554333233322 233345555555553 233221    12344 55555555554222222444555555555


Q ss_pred             EeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCccccccc--ccCCCCCCCCCccCEE
Q 039619          185 MEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLI--LERGPGLHRFTSVRLL  260 (459)
Q Consensus       185 L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~L~~L  260 (459)
                      |++++|......|. .+..+++|++|++++|......+.. ..+++|++|+++++.+.+...  +.   .+..+++|++|
T Consensus       405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~l~~L~~L  481 (606)
T 3t6q_A          405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN---SLQTLGRLEIL  481 (606)
T ss_dssp             EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC---GGGGCTTCCEE
T ss_pred             EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch---hhccCCCccEE
Confidence            55555422222222 2445555555555554322111211 224555555555544432110  01   34445555555


Q ss_pred             EEeCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcce
Q 039619          261 TLFGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLR  335 (459)
Q Consensus       261 ~l~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~  335 (459)
                      ++++  | .+..+ |..+    ..+++|++|++++ +.++.++  .+..+++| +|++++| +++.++...+  +++|+.
T Consensus       482 ~Ls~--n-~l~~~~~~~~----~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          482 VLSF--C-DLSSIDQHAF----TSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRT  551 (606)
T ss_dssp             ECTT--S-CCCEECTTTT----TTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSE
T ss_pred             ECCC--C-ccCccChhhh----ccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCE
Confidence            5555  2 22222 2322    1345555555555 3444333  44555555 5555553 3333333221  345555


Q ss_pred             EEeeCCc
Q 039619          336 LEIYGCP  342 (459)
Q Consensus       336 L~i~~c~  342 (459)
                      |+++++|
T Consensus       552 L~l~~N~  558 (606)
T 3t6q_A          552 INLRQNP  558 (606)
T ss_dssp             EECTTCC
T ss_pred             EeCCCCC
Confidence            5555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=3.5e-17  Score=170.60  Aligned_cols=37  Identities=11%  Similarity=-0.041  Sum_probs=23.8

Q ss_pred             CCCCCeEeccCCCccCcccccCCccCCccceeeccccc
Q 039619           24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQET   61 (459)
Q Consensus        24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~   61 (459)
                      +++|++|++.+.... .........+++|++|.+.++.
T Consensus        51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~   87 (562)
T 3a79_B           51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNR   87 (562)
T ss_dssp             CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCC
T ss_pred             CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCC
Confidence            467888888776442 2222234567888888888775

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=2.5e-17  Score=159.88  Aligned_cols=234  Identities=15%  Similarity=0.195  Sum_probs=180.5

Q ss_pred             CCCCCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeeccccccc
Q 039619           86 PVSVTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLSLRGNLS  155 (459)
Q Consensus        86 ~lp~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp  155 (459)
                      .+|+++++|+++++    .+..+        + |++|+++++ .++.+ |.....+++|++|+++++ .++.+|.. .. 
T Consensus        49 ~~~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~-  120 (330)
T 1xku_A           49 DLPPDTALLDLQNN----KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MP-  120 (330)
T ss_dssp             SCCTTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CC-
T ss_pred             cCCCCCeEEECCCC----cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC-cCCccChh-hc-
Confidence            35678999999985    34433        3 999999884 56665 545666779999999985 67777743 23 


Q ss_pred             cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCc--ccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEE
Q 039619          156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNL--KALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASV  232 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L  232 (459)
                      ++|++|+++++ .+..++ ..+..+++|++|+++++..-  ...+..+..+++|++|+++++ .++.+|.. .+++|++|
T Consensus       121 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTEL  197 (330)
T ss_dssp             TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEE
T ss_pred             ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEE
Confidence            89999999986 455554 45788999999999987432  144567788999999999886 56677754 45899999


Q ss_pred             EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCC
Q 039619          233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSF  310 (459)
Q Consensus       233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L  310 (459)
                      +++++.++... +.   .+..+++|++|++++   +.+..++. .+    ..+++|++|++++ +.++.+| .+..+++|
T Consensus       198 ~l~~n~l~~~~-~~---~~~~l~~L~~L~Ls~---n~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L  265 (330)
T 1xku_A          198 HLDGNKITKVD-AA---SLKGLNNLAKLGLSF---NSISAVDNGSL----ANTPHLRELHLNN-NKLVKVPGGLADHKYI  265 (330)
T ss_dssp             ECTTSCCCEEC-TG---GGTTCTTCCEEECCS---SCCCEECTTTG----GGSTTCCEEECCS-SCCSSCCTTTTTCSSC
T ss_pred             ECCCCcCCccC-HH---HhcCCCCCCEEECCC---CcCceeChhhc----cCCCCCCEEECCC-CcCccCChhhccCCCc
Confidence            99998887654 44   688999999999998   45666554 33    3678999999999 6899999 89999999


Q ss_pred             CEEeccCCCCCCcCCCCCC--------CCCcceEEeeCCch
Q 039619          311 ESLQLCCCPKLQKFPDNGL--------PTSLLRLEIYGCPL  343 (459)
Q Consensus       311 ~~L~l~~c~~l~~lp~~~l--------~~sL~~L~i~~c~~  343 (459)
                      ++|++++| .++.++...+        .++++.|++.++|.
T Consensus       266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence            99999985 6888876433        36788999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.78  E-value=1.1e-17  Score=169.78  Aligned_cols=266  Identities=11%  Similarity=0.069  Sum_probs=168.5

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC  102 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l  102 (459)
                      .+++|++|++.+..-.. ..  ....+++|+.|.+.++... .          +      ..+.+ ++|++|++++|   
T Consensus        40 ~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~-~----------~------~~~~l-~~L~~L~Ls~N---   95 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNIT-T----------L------DLSQN-TNLTYLACDSN---   95 (457)
T ss_dssp             HHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCS-C----------C------CCTTC-TTCSEEECCSS---
T ss_pred             HcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCC-e----------E------ccccC-CCCCEEECcCC---
Confidence            57889999988764322 21  3456888999888877522 0          0      12233 37888888885   


Q ss_pred             CCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccC
Q 039619          103 YEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGL  176 (459)
Q Consensus       103 ~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l  176 (459)
                       .+..+|      |++|+++++ .++.++  ...+++|++|+++++ .++.++. +.+ ++|++|++++|..+..+  .+
T Consensus        96 -~l~~~~~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~l-~~l-~~L~~L~l~~n~~~~~~--~~  166 (457)
T 3bz5_A           96 -KLTNLDVTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEIDV-SHN-TQLTELDCHLNKKITKL--DV  166 (457)
T ss_dssp             -CCSCCCCTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCCC-TTC-TTCCEEECTTCSCCCCC--CC
T ss_pred             -CCceeecCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC-ccceecc-ccC-CcCCEEECCCCCccccc--cc
Confidence             333333      888888774 566665  344558888888774 5666653 456 78888888887666666  36


Q ss_pred             CCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCc
Q 039619          177 DDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTS  256 (459)
Q Consensus       177 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  256 (459)
                      ..+++|++|+++++ .++.+|  +..+++|+.|++++| .++.++ .+.+++|++|++++++++. .      .+..+++
T Consensus       167 ~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~~~~-l~~l~~L~~L~Ls~N~l~~-i------p~~~l~~  234 (457)
T 3bz5_A          167 TPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKLD-LNQNIQLTFLDCSSNKLTE-I------DVTPLTQ  234 (457)
T ss_dssp             TTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSC-C------CCTTCTT
T ss_pred             ccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC-cCCeec-cccCCCCCEEECcCCcccc-c------CccccCC
Confidence            67788888888876 566665  667788888888775 355553 3446788888888877764 3      3467778


Q ss_pred             cCEEEEeCCcCCCceecCCCCCCCccCCCCcceE----------EeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCC
Q 039619          257 VRLLTLFGGECCGVVSFPPEKDTGKALPASLKHL----------SIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPD  326 (459)
Q Consensus       257 L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L----------~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~  326 (459)
                      |+.|++++   +.+..+|..      .+++|+.|          ++++|..+..+| ...+++|+.|++++|+.++.+|.
T Consensus       235 L~~L~l~~---N~l~~~~~~------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          235 LTYFDCSV---NPLTELDVS------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             CSEEECCS---SCCSCCCCT------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             CCEEEeeC---CcCCCcCHH------HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc
Confidence            88888887   355555532      33444444          444433333333 34567788888887776666654


Q ss_pred             CCCCCCcceEEeeCCchhH
Q 039619          327 NGLPTSLLRLEIYGCPLIE  345 (459)
Q Consensus       327 ~~l~~sL~~L~i~~c~~L~  345 (459)
                        -.++|+.|++++|+.|+
T Consensus       305 --~~~~L~~L~l~~~~~L~  321 (457)
T 3bz5_A          305 --QAAGITELDLSQNPKLV  321 (457)
T ss_dssp             --TTCCCSCCCCTTCTTCC
T ss_pred             --CCCcceEechhhcccCC
Confidence              12445555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=4.9e-19  Score=170.75  Aligned_cols=239  Identities=12%  Similarity=0.061  Sum_probs=173.8

Q ss_pred             CCcCceEEeCCCCCCCCC---ccc--------eeEEEEecCCCCc-cccCCccccccCcEEEeecCCCceeecc-ccccc
Q 039619           89 VTLKDPEVLDCPVCYEPL---TIP--------VYQLQIIPCPSLT-SLWSKSELPATLENIYVDRCSKLAFLSL-RGNLS  155 (459)
Q Consensus        89 ~~L~~L~l~~c~~l~~l~---~lp--------L~~L~l~~c~~l~-~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp  155 (459)
                      .++++|+++++    .+.   .+|        |++|++++++.+. .+|.....+++|++|+++++.....+|. ...+ 
T Consensus        50 ~~l~~L~L~~~----~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-  124 (313)
T 1ogq_A           50 YRVNNLDLSGL----NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-  124 (313)
T ss_dssp             CCEEEEEEECC----CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-
T ss_pred             ceEEEEECCCC----CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC-
Confidence            47888888885    333   344        8999998534444 6676666777999999988643336663 3567 


Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCC-CccEEeeccCCCCccccCC-CCCCCccEEE
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLT-SLQYLLIQDCPTIGSFTAN-CFPTNLASVC  233 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~  233 (459)
                      ++|++|+++++.....+|..+..+++|++|+++++.-...+|..+..++ +|++|+++++..-..+|.. ..++ |++|+
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence            8999999998654446788888899999999998854447888888887 8999999886533345543 2344 99999


Q ss_pred             EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-ccC-CCCCCCCCC
Q 039619          234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-RIS-SIENLTSFE  311 (459)
Q Consensus       234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~l~~L~  311 (459)
                      ++++.+.... +.   .+..+++|+.|++++   +.+...+...    ..+++|++|++++ +.++ .+| .+..+++|+
T Consensus       204 Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---N~l~~~~~~~----~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          204 LSRNMLEGDA-SV---LFGSDKNTQKIHLAK---NSLAFDLGKV----GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             CCSSEEEECC-GG---GCCTTSCCSEEECCS---SEECCBGGGC----CCCTTCCEEECCS-SCCEECCCGGGGGCTTCC
T ss_pred             CcCCcccCcC-CH---HHhcCCCCCEEECCC---CceeeecCcc----cccCCCCEEECcC-CcccCcCChHHhcCcCCC
Confidence            9998887554 44   678899999999998   3444322223    2678999999998 5666 677 788899999


Q ss_pred             EEeccCCCCCCcCCCCCCCCCcceEEeeCCchhH
Q 039619          312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIE  345 (459)
Q Consensus       312 ~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~  345 (459)
                      +|++++|+--..+|..+-+++|+.+++.+++.+.
T Consensus       272 ~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             EEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            9999987544477775456788888888887554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.1e-17  Score=175.59  Aligned_cols=280  Identities=13%  Similarity=0.069  Sum_probs=150.0

Q ss_pred             CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619           24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY  103 (459)
Q Consensus        24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~  103 (459)
                      +++++.+++.+... ..........+++|+.|.+.++....           +...   ....+ ++|++|++++|.--.
T Consensus        50 l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~-----------~~~~---~~~~l-~~L~~L~L~~n~l~~  113 (597)
T 3oja_B           50 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEE-----------IDTY---AFAYA-HTIQKLYMGFNAIRY  113 (597)
T ss_dssp             GCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCE-----------ECTT---TTTTC-TTCCEEECCSSCCCC
T ss_pred             CCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCC-----------CChH---HhcCC-CCCCEEECCCCcCCC
Confidence            46667777665432 22222222346778888887664221           1100   11122 367777777642100


Q ss_pred             ----CCCccc-eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccccc
Q 039619          104 ----EPLTIP-VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEG  175 (459)
Q Consensus       104 ----~l~~lp-L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~  175 (459)
                          .+..++ |++|++++| .++.+|... ..+++|++|+++++ .+..++  ..+.+ ++|++|+++++ .+..++  
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~L~~N-~l~~~~--  187 (597)
T 3oja_B          114 LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQAT-TSLQNLQLSSN-RLTHVD--  187 (597)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTC-TTCCEEECTTS-CCSBCC--
T ss_pred             CCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcC-CcCcEEECcCC-CCCCcC--
Confidence                011222 777777663 555666432 44557777777764 444443  23455 67777777664 344442  


Q ss_pred             CCCCCcccEEeecccc------------------CcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecC
Q 039619          176 LDDNTSLETMEIFICQ------------------NLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYE  237 (459)
Q Consensus       176 l~~l~~L~~L~l~~c~------------------~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~  237 (459)
                      +..+++|+.|+++++.                  .+..++..+  .++|+.|++++|. +...+....+++|++|+++++
T Consensus       188 ~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N  264 (597)
T 3oja_B          188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN  264 (597)
T ss_dssp             GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred             hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCC-CCCChhhccCCCCCEEECCCC
Confidence            3334555555555431                  233332221  2456666665542 333333344566777777766


Q ss_pred             cccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEecc
Q 039619          238 KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLC  316 (459)
Q Consensus       238 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~  316 (459)
                      .+.... +.   .+..+++|+.|++++   +.+..+|...    ..+++|+.|++++ +.+..+| .+..+++|++|+++
T Consensus       265 ~l~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~l~~~~----~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          265 ELEKIM-YH---PFVKMQRLERLYISN---NRLVALNLYG----QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             CCCEEE-SG---GGTTCSSCCEEECTT---SCCCEEECSS----SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECC
T ss_pred             ccCCCC-HH---HhcCccCCCEEECCC---CCCCCCCccc----ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECC
Confidence            665443 33   556677777777766   3555555544    1456777777776 5666666 55666777777777


Q ss_pred             CCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          317 CCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       317 ~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      +| .+..++.. .+++|+.|++++++
T Consensus       333 ~N-~l~~~~~~-~~~~L~~L~l~~N~  356 (597)
T 3oja_B          333 HN-SIVTLKLS-THHTLKNLTLSHND  356 (597)
T ss_dssp             SS-CCCCCCCC-TTCCCSEEECCSSC
T ss_pred             CC-CCCCcChh-hcCCCCEEEeeCCC
Confidence            64 35555432 24677777777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.77  E-value=3.4e-17  Score=166.07  Aligned_cols=267  Identities=12%  Similarity=0.071  Sum_probs=193.1

Q ss_pred             CCCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCC
Q 039619           20 SSSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDC   99 (459)
Q Consensus        20 ~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c   99 (459)
                      ....+++|++|++.++.-.. .   ....+++|+.|.+.++....           +      ..+.++ +|++|+++++
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~-~---~~~~l~~L~~L~Ls~N~l~~-----------~------~~~~l~-~L~~L~L~~N  116 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITT-L---DLSQNTNLTYLACDSNKLTN-----------L------DVTPLT-KLTYLNCDTN  116 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC-----------C------CCTTCT-TCCEEECCSS
T ss_pred             hhcccCCCCEEEccCCcCCe-E---ccccCCCCCEEECcCCCCce-----------e------ecCCCC-cCCEEECCCC
Confidence            44568999999998875432 2   25578999999999875220           0      123444 8999999995


Q ss_pred             CCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCcccc
Q 039619          100 PVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIA  173 (459)
Q Consensus       100 ~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp  173 (459)
                          .+..+|      |++|++++ +.++.++  ...+++|++|+++++..+..++. +.+ ++|++|+++++ .++.+|
T Consensus       117 ----~l~~l~~~~l~~L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~-~~l-~~L~~L~ls~n-~l~~l~  186 (457)
T 3bz5_A          117 ----KLTKLDVSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKITKLDV-TPQ-TQLTTLDCSFN-KITELD  186 (457)
T ss_dssp             ----CCSCCCCTTCTTCCEEECTT-SCCSCCC--CTTCTTCCEEECTTCSCCCCCCC-TTC-TTCCEEECCSS-CCCCCC
T ss_pred             ----cCCeecCCCCCcCCEEECCC-Cccceec--cccCCcCCEEECCCCCccccccc-ccC-CcCCEEECCCC-ccceec
Confidence                444444      99999987 5676665  34556999999999877877753 467 89999999985 677776


Q ss_pred             ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCC
Q 039619          174 EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHR  253 (459)
Q Consensus       174 ~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~  253 (459)
                        +..+++|+.|+++++ .++.+  .+..+++|+.|+++++ .++.+| ...+++|++|+++++.++...       +..
T Consensus       187 --l~~l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~l~~~~-------~~~  252 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNPLTELD-------VST  252 (457)
T ss_dssp             --CTTCTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSCCC-------CTT
T ss_pred             --cccCCCCCEEECcCC-cCCee--ccccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCcCCCcC-------HHH
Confidence              788999999999987 56666  3788999999999886 566777 456789999999998887533       244


Q ss_pred             CCccCE----------EEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---------CCCCCCCCCEEe
Q 039619          254 FTSVRL----------LTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---------SIENLTSFESLQ  314 (459)
Q Consensus       254 l~~L~~----------L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---------~l~~l~~L~~L~  314 (459)
                      +++|+.          |++++  |.....+|..      .+++|+.|++++|..++.+|         .+..+++|++|+
T Consensus       253 l~~L~~L~l~~n~L~~L~l~~--n~~~~~~~~~------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~  324 (457)
T 3bz5_A          253 LSKLTTLHCIQTDLLEIDLTH--NTQLIYFQAE------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY  324 (457)
T ss_dssp             CTTCCEEECTTCCCSCCCCTT--CTTCCEEECT------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             CCCCCEEeccCCCCCEEECCC--CccCCccccc------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence            555554          45555  4445555532      56899999999987666655         245567788888


Q ss_pred             ccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          315 LCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       315 l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      ++++ +++.++- +-+++|+.|+++++.
T Consensus       325 L~~N-~l~~l~l-~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          325 LNNT-ELTELDV-SHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CTTC-CCSCCCC-TTCTTCSEEECCSSC
T ss_pred             CCCC-ccccccc-ccCCcCcEEECCCCC
Confidence            8774 5666642 236788999887753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=7.8e-18  Score=175.49  Aligned_cols=212  Identities=17%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |++|+++++ .++.+|...... +|++|++++| .+..+|. ..+ ++|++|+++++.....++.  ..+++|++|++++
T Consensus       284 L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~-~~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~  356 (570)
T 2z63_A          284 VSSFSLVSV-TIERVKDFSYNF-GWQHLELVNC-KFGQFPT-LKL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR  356 (570)
T ss_dssp             CSEEEEESC-EECSCCBCCSCC-CCSEEEEESC-BCSSCCB-CBC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred             ccEEEecCc-cchhhhhhhccC-CccEEeeccC-cccccCc-ccc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence            666777663 445566555555 7777777775 3445554 344 6666666666543333222  4456666666665


Q ss_pred             ccCcccC---cccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619          190 CQNLKAL---PNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG  265 (459)
Q Consensus       190 c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~  265 (459)
                      | .+...   |..+..+++|++|++++|. +..++.. ..+++|++|+++++.+.... +.  ..+..+++|++|++++ 
T Consensus       357 n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~--~~~~~l~~L~~L~l~~-  430 (570)
T 2z63_A          357 N-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMS-EF--SVFLSLRNLIYLDISH-  430 (570)
T ss_dssp             S-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCT-TS--CTTTTCTTCCEEECTT-
T ss_pred             C-ccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCcccccc-ch--hhhhcCCCCCEEeCcC-
Confidence            5 22222   3344455566666665543 3333322 23455666666555444322 10  1345555566666655 


Q ss_pred             cCCCceecCCCCCCCccCCCCcceEEeecCCCCC--ccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeC
Q 039619          266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE--RIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYG  340 (459)
Q Consensus       266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~  340 (459)
                       |......|..+    ..+++|++|++++| .+.  .+| .+..+++|++|++++| .++.++...+  +++|++|++++
T Consensus       431 -n~l~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          431 -THTRVAFNGIF----NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             -SCCEECCTTTT----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             -Ccccccchhhh----hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCC
Confidence             33222233322    13455555655552 332  344 5555555666666554 2333321111  35555555555


Q ss_pred             C
Q 039619          341 C  341 (459)
Q Consensus       341 c  341 (459)
                      |
T Consensus       504 n  504 (570)
T 2z63_A          504 N  504 (570)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=4.6e-17  Score=167.93  Aligned_cols=127  Identities=15%  Similarity=0.154  Sum_probs=61.8

Q ss_pred             CCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccc--cccccCCCCCCCCCccCEEEEeCCcCCCcee-cCCC
Q 039619          201 RNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYK--PLILERGPGLHRFTSVRLLTLFGGECCGVVS-FPPE  276 (459)
Q Consensus       201 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~--~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~-l~~~  276 (459)
                      ..+++|++|++++|..-...|.. +.+++|++|+++++.+..  .. +.   .+..+++|++|++++   +.+.. +|..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~---~~~~l~~L~~L~Ls~---N~l~~~l~~~  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI-AE---MTTQMKSLQQLDISQ---NSVSYDEKKG  393 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH-HH---HHTTCTTCCEEECCS---SCCBCCGGGC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc-hH---HHhhCCCCCEEECCC---CcCCcccccc
Confidence            35566666666665322223322 345566666666655543  11 12   345666666666665   23333 4432


Q ss_pred             CCCCccCCCCcceEEeecCCCC-CccC-CCCCCCCCCEEeccCCCCCCcCCCCC-CCCCcceEEeeCC
Q 039619          277 KDTGKALPASLKHLSIWNFPNL-ERIS-SIENLTSFESLQLCCCPKLQKFPDNG-LPTSLLRLEIYGC  341 (459)
Q Consensus       277 ~~~~~~~~~~L~~L~l~~c~~l-~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~-l~~sL~~L~i~~c  341 (459)
                      .   ...+++|++|++++ +.+ ..++ .+.  ++|++|++++| +++.+|... -+++|++|++++|
T Consensus       394 ~---~~~l~~L~~L~Ls~-N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          394 D---CSWTKSLLSLNMSS-NILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             S---CCCCTTCCEEECCS-SCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred             h---hccCccCCEEECcC-CCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence            1   01345566666665 233 2222 222  45666666553 455555421 2455666666555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=2.3e-17  Score=160.37  Aligned_cols=256  Identities=15%  Similarity=0.208  Sum_probs=184.2

Q ss_pred             CCCCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeecccccccc
Q 039619           87 VSVTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLSLRGNLSK  156 (459)
Q Consensus        87 lp~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~  156 (459)
                      ++++|++|+++++    .+..+        + |++|+++++ .++.+ |.....+++|++|+++++ .++.+|... . +
T Consensus        52 ~~~~l~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~-~  123 (332)
T 2ft3_A           52 ISPDTTLLDLQNN----DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-P-S  123 (332)
T ss_dssp             CCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC-C-T
T ss_pred             CCCCCeEEECCCC----cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC-cCCccCccc-c-c
Confidence            3568889998885    34333        3 999999885 56665 444566679999999885 677777432 2 7


Q ss_pred             ccceEEeecccCCccccc-cCCCCCcccEEeeccccCc--ccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEE
Q 039619          157 ALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNL--KALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVC  233 (459)
Q Consensus       157 ~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~  233 (459)
                      +|++|+++++ .+..++. .+..+++|++|+++++..-  ...|..+..+ +|++|+++++ .++.+|.. .+++|++|+
T Consensus       124 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~-~~~~L~~L~  199 (332)
T 2ft3_A          124 SLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKD-LPETLNELH  199 (332)
T ss_dssp             TCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSS-SCSSCSCCB
T ss_pred             cCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcc-ccCCCCEEE
Confidence            9999999985 5666754 4788999999999987432  2445566666 9999999885 46677653 458999999


Q ss_pred             EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCC
Q 039619          234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFE  311 (459)
Q Consensus       234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~  311 (459)
                      ++++.+.... +.   .+..+++|+.|++++   +.+..++. .+    ..+++|++|++++ +.++.+| .+..+++|+
T Consensus       200 l~~n~i~~~~-~~---~l~~l~~L~~L~L~~---N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~  267 (332)
T 2ft3_A          200 LDHNKIQAIE-LE---DLLRYSKLYRLGLGH---NQIRMIENGSL----SFLPTLRELHLDN-NKLSRVPAGLPDLKLLQ  267 (332)
T ss_dssp             CCSSCCCCCC-TT---SSTTCTTCSCCBCCS---SCCCCCCTTGG----GGCTTCCEEECCS-SCCCBCCTTGGGCTTCC
T ss_pred             CCCCcCCccC-HH---HhcCCCCCCEEECCC---CcCCcCChhHh----hCCCCCCEEECCC-CcCeecChhhhcCccCC
Confidence            9998887654 44   688999999999998   46666654 23    3678999999999 7899999 888999999


Q ss_pred             EEeccCCCCCCcCCCCCC--------CCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCce
Q 039619          312 SLQLCCCPKLQKFPDNGL--------PTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCH  370 (459)
Q Consensus       312 ~L~l~~c~~l~~lp~~~l--------~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~  370 (459)
                      +|+++++ .++.++...+        .++|+.|++.++|........   ..+..+.++..+.+.++
T Consensus       268 ~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          268 VVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             EEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred             EEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence            9999985 6787775332        357899999998843221111   12344555566666544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=2.2e-17  Score=167.40  Aligned_cols=291  Identities=14%  Similarity=0.077  Sum_probs=185.6

Q ss_pred             CCCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCC
Q 039619           20 SSSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDC   99 (459)
Q Consensus        20 ~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c   99 (459)
                      ....+++|++|++.++.............+++|++|.+.++....           +...   ....+ ++|++|++++|
T Consensus        49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~---~~~~l-~~L~~L~L~~n  113 (455)
T 3v47_A           49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-----------LETG---AFNGL-ANLEVLTLTQC  113 (455)
T ss_dssp             TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-----------ECTT---TTTTC-TTCCEEECTTS
T ss_pred             HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-----------cChh---hccCc-ccCCEEeCCCC
Confidence            345689999999988765434444445678999999999875321           1111   11233 38999999886


Q ss_pred             CCCCC-------CCccc-eeEEEEecCCCCccc-cCC-ccccccCcEEEeecCCCceeeccc--ccc-ccccceEEeecc
Q 039619          100 PVCYE-------PLTIP-VYQLQIIPCPSLTSL-WSK-SELPATLENIYVDRCSKLAFLSLR--GNL-SKALKHLYIISC  166 (459)
Q Consensus       100 ~~l~~-------l~~lp-L~~L~l~~c~~l~~l-p~~-~~~~~~L~~L~l~~c~~l~~l~~~--~~l-p~~L~~L~l~~c  166 (459)
                      .- ..       +..++ |++|+++++ .++.+ |.. ...+++|++|+++++ .+..++..  ..+ ..+|+.|+++++
T Consensus       114 ~l-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          114 NL-DGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             CC-BTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CC-CccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccC
Confidence            31 11       23334 899999874 45554 422 455678999999885 34433211  111 034455555543


Q ss_pred             cCCccccc---------cCCCCCcccEEeecccc---------------------------CcccC------c----ccC
Q 039619          167 SNLESIAE---------GLDDNTSLETMEIFICQ---------------------------NLKAL------P----NGL  200 (459)
Q Consensus       167 ~~l~~lp~---------~l~~l~~L~~L~l~~c~---------------------------~l~~l------p----~~l  200 (459)
                       .+..++.         .+..+++|++|++++|.                           .....      +    ..+
T Consensus       191 -~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          191 -TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             -BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             -cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence             2222211         12233445555555442                           11100      0    011


Q ss_pred             C--CCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecC-CC
Q 039619          201 R--NLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PE  276 (459)
Q Consensus       201 ~--~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~  276 (459)
                      .  ..++|+.|+++++......+.. ..+++|++|+++++.+.... +.   .+..+++|++|++++   +.+..++ ..
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~~~~~~  342 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DN---AFWGLTHLLKLNLSQ---NFLGSIDSRM  342 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TT---TTTTCTTCCEEECCS---SCCCEECGGG
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hh---HhcCcccCCEEECCC---CccCCcChhH
Confidence            1  2368999999987544333433 55889999999998887654 44   688999999999999   3555554 33


Q ss_pred             CCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          277 KDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       277 ~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      +    ..+++|++|++++ +.++.++  .+..+++|++|++++| +++.+|...+  +++|++|++++++
T Consensus       343 ~----~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          343 F----ENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             G----TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             h----cCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            3    2678999999999 6788774  8899999999999994 7888886443  6899999999865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=2.4e-17  Score=167.12  Aligned_cols=193  Identities=20%  Similarity=0.213  Sum_probs=112.4

Q ss_pred             CCCCcCceEEeCCCCCCCCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceE
Q 039619           87 VSVTLKDPEVLDCPVCYEPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHL  161 (459)
Q Consensus        87 lp~~L~~L~l~~c~~l~~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L  161 (459)
                      +|++|++|+++++    .+..+|     |++|++++ +.++.++   ..+++|++|+++++ .++.+|..+.+ ++|++|
T Consensus        89 ~~~~L~~L~l~~n----~l~~lp~~~~~L~~L~l~~-n~l~~l~---~~~~~L~~L~L~~n-~l~~lp~~~~l-~~L~~L  158 (454)
T 1jl5_A           89 LPPHLESLVASCN----SLTELPELPQSLKSLLVDN-NNLKALS---DLPPLLEYLGVSNN-QLEKLPELQNS-SFLKII  158 (454)
T ss_dssp             CCTTCSEEECCSS----CCSSCCCCCTTCCEEECCS-SCCSCCC---SCCTTCCEEECCSS-CCSSCCCCTTC-TTCCEE
T ss_pred             CcCCCCEEEccCC----cCCccccccCCCcEEECCC-CccCccc---CCCCCCCEEECcCC-CCCCCcccCCC-CCCCEE
Confidence            4567777777763    444444     77777766 3555555   23357777777664 45556655566 677777


Q ss_pred             EeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccc
Q 039619          162 YIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYK  241 (459)
Q Consensus       162 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~  241 (459)
                      +++++ .++.+|..+   .+|++|+++++ .+..+| .++.+++|++|++++| .++.+|.  .+++|++|+++++.+..
T Consensus       159 ~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l~~n~l~~  229 (454)
T 1jl5_A          159 DVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNNILEE  229 (454)
T ss_dssp             ECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSCCSS
T ss_pred             ECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC--CcCcccEEECcCCcCCc
Confidence            77764 455555432   46777777766 455565 4666777777777664 3444443  34567777777666553


Q ss_pred             cccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccC
Q 039619          242 PLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCC  317 (459)
Q Consensus       242 ~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~  317 (459)
                      ..      .+..+++|++|++++   +.+..+|.       .+++|++|++++ +.++.+|.  .+++|++|++++
T Consensus       230 lp------~~~~l~~L~~L~l~~---N~l~~l~~-------~~~~L~~L~l~~-N~l~~l~~--~~~~L~~L~ls~  286 (454)
T 1jl5_A          230 LP------ELQNLPFLTTIYADN---NLLKTLPD-------LPPSLEALNVRD-NYLTDLPE--LPQSLTFLDVSE  286 (454)
T ss_dssp             CC------CCTTCTTCCEEECCS---SCCSSCCS-------CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCS
T ss_pred             cc------ccCCCCCCCEEECCC---CcCCcccc-------cccccCEEECCC-CcccccCc--ccCcCCEEECcC
Confidence            22      356666777777766   34445553       335666666665 44555541  124555555555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=7.6e-17  Score=162.89  Aligned_cols=213  Identities=15%  Similarity=0.190  Sum_probs=131.7

Q ss_pred             eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccccc-cCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L  185 (459)
                      ++.|++++ +.++.++ .....+++|++|+++++ .+..++  ....+ ++|++|+++++ .++.++. .+..+++|++|
T Consensus        66 l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           66 TRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGL-ANLNTLELFDN-RLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CSEEECCS-CCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTC-SSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred             CcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCC-ccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence            55566655 3444443 22344457777777764 455554  22455 67777777764 5555544 46667777777


Q ss_pred             eeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEE
Q 039619          186 EIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTL  262 (459)
Q Consensus       186 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l  262 (459)
                      +++++ .+..++. .+..+++|++|++++|+.+..++..  ..+++|++|+++++.++...      .+..+++|++|++
T Consensus       142 ~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L  214 (440)
T 3zyj_A          142 WLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDL  214 (440)
T ss_dssp             ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEEC
T ss_pred             eCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEEC
Confidence            77776 3444443 4566777777777776666666653  33667777777776666433      4567777777777


Q ss_pred             eCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEE
Q 039619          263 FGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLE  337 (459)
Q Consensus       263 ~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~  337 (459)
                      ++   +.+..+ |..+    ..+++|++|++++ +.++.++  .+..+++|++|+++++ +++.++...+  +++|+.|+
T Consensus       215 s~---N~l~~~~~~~~----~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          215 SG---NHLSAIRPGSF----QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIH  285 (440)
T ss_dssp             TT---SCCCEECTTTT----TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEE
T ss_pred             CC---CccCccChhhh----ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEE
Confidence            77   344444 3333    2566777777777 5666665  5667777777777774 5666665333  56777777


Q ss_pred             eeCCc
Q 039619          338 IYGCP  342 (459)
Q Consensus       338 i~~c~  342 (459)
                      ++++|
T Consensus       286 L~~Np  290 (440)
T 3zyj_A          286 LHHNP  290 (440)
T ss_dssp             CCSSC
T ss_pred             cCCCC
Confidence            77654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=5.6e-17  Score=164.43  Aligned_cols=213  Identities=17%  Similarity=0.201  Sum_probs=117.6

Q ss_pred             eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccccc-CCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L  185 (459)
                      +++|++++ +.++.++ .....+++|++|+++++ .+..++  ....+ ++|++|+++++ .+..+|.. +..+++|++|
T Consensus        77 l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           77 TRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGL-ASLNTLELFDN-WLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CSEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC-TTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred             ccEEECcC-CcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCc-ccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence            45555544 2343332 22334456666666663 444444  22445 66666666664 34555433 5556666666


Q ss_pred             eeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEE
Q 039619          186 EIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTL  262 (459)
Q Consensus       186 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l  262 (459)
                      +++++ .+..+|. .+..+++|++|++++|+.++.++..  ..+++|++|+++++.++...      .+..+++|++|++
T Consensus       153 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L  225 (452)
T 3zyi_A          153 WLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEM  225 (452)
T ss_dssp             ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEEC
T ss_pred             ECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc------cccccccccEEEC
Confidence            66665 3444433 4556666666666666666665543  23566666666666555433      4556666666666


Q ss_pred             eCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEE
Q 039619          263 FGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLE  337 (459)
Q Consensus       263 ~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~  337 (459)
                      ++   +.+..+ |..+    ..+++|++|++++ +.++.++  .+..+++|++|+++++ +++.++...+  +++|+.|+
T Consensus       226 s~---N~l~~~~~~~~----~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          226 SG---NHFPEIRPGSF----HGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             TT---SCCSEECGGGG----TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEE
T ss_pred             cC---CcCcccCcccc----cCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEE
Confidence            66   233333 2222    2455666666666 4555554  5566666777777664 5566654332  45666776


Q ss_pred             eeCCc
Q 039619          338 IYGCP  342 (459)
Q Consensus       338 i~~c~  342 (459)
                      ++++|
T Consensus       297 L~~Np  301 (452)
T 3zyi_A          297 LHHNP  301 (452)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            66654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=1e-16  Score=166.32  Aligned_cols=191  Identities=18%  Similarity=0.195  Sum_probs=137.6

Q ss_pred             cceEEeecccCCccccccC-CCCCcccEEeeccccCcccCc---ccCCCCCCccEEeeccCCCCccccC----CCCCCCc
Q 039619          158 LKHLYIISCSNLESIAEGL-DDNTSLETMEIFICQNLKALP---NGLRNLTSLQYLLIQDCPTIGSFTA----NCFPTNL  229 (459)
Q Consensus       158 L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~~~L  229 (459)
                      |++|+++++ .+..+|..+ ..+++|++|++++|.....+|   ..++.+++|++|++++| .++.++.    ...+++|
T Consensus       312 L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          312 VKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             CCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTC
T ss_pred             ceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCC
Confidence            444444442 244455444 368899999999985444443   34678999999999986 4655542    2457899


Q ss_pred             cEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCC
Q 039619          230 ASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTS  309 (459)
Q Consensus       230 ~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~  309 (459)
                      ++|++++++++. . +.   .+..+++|++|++++   +.+..+|..      .+++|++|++++ +.++.++  ..+++
T Consensus       390 ~~L~Ls~N~l~~-l-p~---~~~~~~~L~~L~Ls~---N~l~~l~~~------~~~~L~~L~Ls~-N~l~~~~--~~l~~  452 (549)
T 2z81_A          390 TSLDISRNTFHP-M-PD---SCQWPEKMRFLNLSS---TGIRVVKTC------IPQTLEVLDVSN-NNLDSFS--LFLPR  452 (549)
T ss_dssp             CEEECTTCCCCC-C-CS---CCCCCTTCCEEECTT---SCCSCCCTT------SCTTCSEEECCS-SCCSCCC--CCCTT
T ss_pred             CEEECCCCCCcc-C-Ch---hhcccccccEEECCC---CCcccccch------hcCCceEEECCC-CChhhhc--ccCCh
Confidence            999999988874 3 44   678899999999999   467777763      457999999999 5777654  57889


Q ss_pred             CCEEeccCCCCCCcCCCCCCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCceeee
Q 039619          310 FESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVI  373 (459)
Q Consensus       310 L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l  373 (459)
                      |++|++++| +++.+|..+.+++|++|+++++. ++...    ...+.....+..+.+.++.-.
T Consensus       453 L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          453 LQELYISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSVP----DGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             CCEEECCSS-CCSSCCCGGGCTTCCEEECCSSC-CCCCC----TTGGGGCTTCCEEECCSSCBC
T ss_pred             hcEEECCCC-ccCcCCCcccCccCCEEecCCCc-cCCcC----HHHHhcCcccCEEEecCCCcc
Confidence            999999996 78889986668999999999984 22211    112345667788888776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=1.6e-16  Score=169.21  Aligned_cols=303  Identities=12%  Similarity=0.020  Sum_probs=148.2

Q ss_pred             CCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCC
Q 039619           21 SSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCP  100 (459)
Q Consensus        21 ~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~  100 (459)
                      ...+++|++|++.++... .........+++|+.|.+.++..-.....  .....+....   ...+ ++|++|+++++.
T Consensus       268 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~lp~i~~~~---~~~l-~~L~~L~l~~n~  340 (680)
T 1ziw_A          268 FAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSFTKQSISL--ASLPKIDDFS---FQWL-KCLEHLNMEDND  340 (680)
T ss_dssp             TTTCTTCCEEECCSCCBS-EECTTTTTTCTTCCEEECTTCBCCC--------CCEECTTT---TTTC-TTCCEEECCSCC
T ss_pred             ccCcccccEeeCCCCccC-ccChhhhcCCCCccEEeccchhhhccccc--ccccccChhh---cccC-CCCCEEECCCCc
Confidence            446899999999876443 22233345688899998876431100000  0000111000   1122 367777776642


Q ss_pred             CC----CCCCccc-eeEEEEecCC-CCccccCCc-c--ccccCcEEEeecCCCceeec--cccccccccceEEeecccCC
Q 039619          101 VC----YEPLTIP-VYQLQIIPCP-SLTSLWSKS-E--LPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNL  169 (459)
Q Consensus       101 ~l----~~l~~lp-L~~L~l~~c~-~l~~lp~~~-~--~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l  169 (459)
                      --    ..+..++ |++|++++|. .+..++... .  ..++|+.|+++++ .+..++  ....+ ++|++|+++++...
T Consensus       341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWL-GHLEVLDLGLNEIG  418 (680)
T ss_dssp             BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTTTTC-TTCCEEECCSSCCE
T ss_pred             cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhhhCC-CCCCEEeCCCCcCc
Confidence            10    0012222 6777776543 122333111 0  0135666666664 333332  12345 66666666664332


Q ss_pred             cccc-ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCC--CccccCC-CCCCCccEEEEecCcccccccc
Q 039619          170 ESIA-EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPT--IGSFTAN-CFPTNLASVCIDYEKIYKPLIL  245 (459)
Q Consensus       170 ~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~--l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~  245 (459)
                      ..+| ..+..+++|++|++++|......+..+..+++|+.|+++++..  +...|.. ..+++|+.|+++++.++... +
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~-~  497 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-D  497 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC-h
Confidence            3343 3455666666666666633222334455566666666655431  1222322 33556666666665555433 2


Q ss_pred             cCCCCCCCCCccCEEEEeCCcCCCceecCCCC-----CCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          246 ERGPGLHRFTSVRLLTLFGGECCGVVSFPPEK-----DTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       246 ~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~-----~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                      .   .+..+++|++|++++   +.+..++...     ......+++|++|++++ +.++.+|  .+..+++|++|++++ 
T Consensus       498 ~---~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~-  569 (680)
T 1ziw_A          498 D---MLEGLEKLEILDLQH---NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL-  569 (680)
T ss_dssp             T---TTTTCTTCCEEECCS---SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             h---hhccccccCEEeCCC---CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC-
Confidence            2   455666666666665   2333321110     00001345666666666 4566665  355666666666655 


Q ss_pred             CCCCcCCCCCC--CCCcceEEeeCC
Q 039619          319 PKLQKFPDNGL--PTSLLRLEIYGC  341 (459)
Q Consensus       319 ~~l~~lp~~~l--~~sL~~L~i~~c  341 (459)
                      ++++.+|...+  +++|+.|+++++
T Consensus       570 N~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          570 NNLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCCcCCHhHhCCCCCCCEEECCCC
Confidence            35555554322  456666666665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=3.6e-17  Score=156.98  Aligned_cols=214  Identities=18%  Similarity=0.167  Sum_probs=157.7

Q ss_pred             eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceee---c-cccccccccceEEeecccCCccccccCCCCCcccE
Q 039619          110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFL---S-LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLET  184 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l---~-~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  184 (459)
                      |++|++++ ..++.+|.. ...+++|++|+++++ .+..+   + ....+ ++|++|+++++ .+..+|..+..+++|++
T Consensus        30 l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~-~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           30 ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGT-TSLKYLDLSFN-GVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             CCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSC-SCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred             CCEEECCC-CccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccc-cccCEEECCCC-ccccChhhcCCCCCCCE
Confidence            66666665 346666643 345569999999885 55544   2 22346 89999999985 57778888889999999


Q ss_pred             EeeccccCcccCcc--cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccc-cccccCCCCCCCCCccCE
Q 039619          185 MEIFICQNLKALPN--GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYK-PLILERGPGLHRFTSVRL  259 (459)
Q Consensus       185 L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~-~~~~~~~~~l~~l~~L~~  259 (459)
                      |+++++ .+..++.  .+..+++|++|++++|. +...+..  ..+++|++|+++++.+.. .. +.   .+..+++|++
T Consensus       106 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~---~~~~l~~L~~  179 (306)
T 2z66_A          106 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PD---IFTELRNLTF  179 (306)
T ss_dssp             EECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEE-CS---CCTTCTTCCE
T ss_pred             EECCCC-cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccc-hh---HHhhCcCCCE
Confidence            999987 5555553  67889999999998875 4433322  447899999999988765 22 34   6789999999


Q ss_pred             EEEeCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCC---CCCCCc
Q 039619          260 LTLFGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDN---GLPTSL  333 (459)
Q Consensus       260 L~l~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~---~l~~sL  333 (459)
                      |++++   +.+..+ |..+    ..+++|++|++++ +.++.++  .+..+++|++|++++| .+...+..   .++++|
T Consensus       180 L~Ls~---n~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          180 LDLSQ---CQLEQLSPTAF----NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             EECTT---SCCCEECTTTT----TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTC
T ss_pred             EECCC---CCcCCcCHHHh----cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccC
Confidence            99998   355555 4444    3678999999999 6788877  6788999999999997 45544332   235699


Q ss_pred             ceEEeeCCc
Q 039619          334 LRLEIYGCP  342 (459)
Q Consensus       334 ~~L~i~~c~  342 (459)
                      ++|++++++
T Consensus       251 ~~L~L~~N~  259 (306)
T 2z66_A          251 AFLNLTQND  259 (306)
T ss_dssp             CEEECTTCC
T ss_pred             CEEEccCCC
Confidence            999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.74  E-value=4.6e-17  Score=167.95  Aligned_cols=98  Identities=9%  Similarity=-0.078  Sum_probs=50.7

Q ss_pred             CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619           24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY  103 (459)
Q Consensus        24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~  103 (459)
                      +++|++|+++++.... ........+++|+.|.+.++.....           ...   ....++ +|++|+++++    
T Consensus        20 ~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~---~~~~l~-~L~~L~Ls~N----   79 (520)
T 2z7x_B           20 SQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYL-----------DIS---VFKFNQ-ELEYLDLSHN----   79 (520)
T ss_dssp             CTTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEE-----------EGG---GGTTCT-TCCEEECCSS----
T ss_pred             cccccEEECCCCcccc-cChhhccccccccEEecCCCccCCc-----------ChH---Hhhccc-CCCEEecCCC----
Confidence            4788888888765422 2212234578888888887653210           000   011222 5666666663    


Q ss_pred             CCCccc------eeEEEEecCCCCcc--ccCCccccccCcEEEeecC
Q 039619          104 EPLTIP------VYQLQIIPCPSLTS--LWSKSELPATLENIYVDRC  142 (459)
Q Consensus       104 ~l~~lp------L~~L~l~~c~~l~~--lp~~~~~~~~L~~L~l~~c  142 (459)
                      .+..+|      |++|+++++ .++.  +|...+.+++|++|+++++
T Consensus        80 ~l~~lp~~~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           80 KLVKISCHPTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CCCEEECCCCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             ceeecCccccCCccEEeccCC-ccccccchhhhccCCcceEEEecCc
Confidence            344444      666666553 3332  3334444456666666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=3.8e-17  Score=151.08  Aligned_cols=208  Identities=15%  Similarity=0.168  Sum_probs=138.0

Q ss_pred             CCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcc
Q 039619          118 CPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLK  194 (459)
Q Consensus       118 c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~  194 (459)
                      |..++.+|.   ++.+|++|+++++ .++.++.  ...+ ++|++|+++++..++.++. .+..+++|++|++++|+.++
T Consensus        20 c~~l~~ip~---~~~~l~~L~l~~n-~l~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           20 CKDIQRIPS---LPPSTQTLKLIET-HLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             ECSCSSCCC---CCTTCCEEEEESC-CCSEECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred             ccCccccCC---CCCcccEEEEeCC-cceEECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence            444666663   4556777777663 5666653  2455 6777777776544666654 45667777777777655666


Q ss_pred             cCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCcc---EEEEecC-cccccccccCCCCCCCCCccC-EEEEeCCcCC
Q 039619          195 ALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLA---SVCIDYE-KIYKPLILERGPGLHRFTSVR-LLTLFGGECC  268 (459)
Q Consensus       195 ~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~l~~l~~L~-~L~l~~~~c~  268 (459)
                      .++. .+..+++|++|+++++ .++.+|....+++|+   +|+++++ .++... +.   .+..+++|+ +|++++   +
T Consensus        95 ~i~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-~~---~~~~l~~L~~~L~l~~---n  166 (239)
T 2xwt_C           95 YIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-VN---AFQGLCNETLTLKLYN---N  166 (239)
T ss_dssp             EECTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-TT---TTTTTBSSEEEEECCS---C
T ss_pred             EcCHHHhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcC-cc---cccchhcceeEEEcCC---C
Confidence            5553 4556777777777665 345555433445555   7777776 665433 22   577888999 999988   4


Q ss_pred             CceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC-CCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCchh
Q 039619          269 GVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL-TSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLI  344 (459)
Q Consensus       269 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l-~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L  344 (459)
                      .+..+|...    ...++|++|+++++..++.++  .+..+ ++|++|++++ +.++.+|.. .+++|+.|++.++..|
T Consensus       167 ~l~~i~~~~----~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          167 GFTSVQGYA----FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL  239 (239)
T ss_dssp             CCCEECTTT----TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred             CCcccCHhh----cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence            677887754    133689999999844688887  67788 8999999988 578888875 4588999998887643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=4.4e-16  Score=169.95  Aligned_cols=121  Identities=15%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             CCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceec-CCCCCCC
Q 039619          204 TSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSF-PPEKDTG  280 (459)
Q Consensus       204 ~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l-~~~~~~~  280 (459)
                      ++|+.|+++++. +..++..  ..+++|+.|+++++.+.... +.   .+..+++|++|++++   +.+..+ +..+   
T Consensus       266 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~~~~~~~---  334 (844)
T 3j0a_A          266 SSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIA-DE---AFYGLDNLQVLNLSY---NLLGELYSSNF---  334 (844)
T ss_dssp             SCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEEC-TT---TTTTCSSCCEEEEES---CCCSCCCSCSC---
T ss_pred             CCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCC-hH---HhcCCCCCCEEECCC---CCCCccCHHHh---
Confidence            345555555542 2233222  23556666666665554433 22   455666666666665   233333 2222   


Q ss_pred             ccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619          281 KALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC  341 (459)
Q Consensus       281 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c  341 (459)
                       ..+++|++|++++ +.+..++  .+..+++|++|++++| .++.++.   +++|+.|+++++
T Consensus       335 -~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~L~~L~l~~N  391 (844)
T 3j0a_A          335 -YGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---IPSIPDIFLSGN  391 (844)
T ss_dssp             -SSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS---CCSCSEEEEESC
T ss_pred             -cCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCC-CCCcccC---CCCcchhccCCC
Confidence             2455666666666 4555555  4556666666666663 4444442   455666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=3.6e-16  Score=163.76  Aligned_cols=249  Identities=18%  Similarity=0.225  Sum_probs=173.7

Q ss_pred             CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCCC
Q 039619           26 KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEP  105 (459)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~l  105 (459)
                      ++++|++.+..-. .....   .+++|+.|.+.++..-           .+        ...+++|++|++++|    .+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~---l~~~L~~L~L~~N~l~-----------~l--------p~~l~~L~~L~Ls~N----~l   93 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDC---LPAHITTLVIPDNNLT-----------SL--------PALPPELRTLEVSGN----QL   93 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSC---CCTTCSEEEECSCCCS-----------CC--------CCCCTTCCEEEECSC----CC
T ss_pred             CCcEEEecCCCcC-ccChh---hCCCCcEEEecCCCCC-----------CC--------CCcCCCCCEEEcCCC----cC
Confidence            4677777665432 22211   2367888888866421           01        113458888888885    45


Q ss_pred             Cccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCC
Q 039619          106 LTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNT  180 (459)
Q Consensus       106 ~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~  180 (459)
                      +.+|     |++|++++ +.++.+|.   .+++|++|+++++ .++.+|.  .+ ++|++|++++| .+..+|..   ++
T Consensus        94 ~~lp~~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~--~l-~~L~~L~Ls~N-~l~~l~~~---~~  161 (622)
T 3g06_A           94 TSLPVLPPGLLELSIFS-NPLTHLPA---LPSGLCKLWIFGN-QLTSLPV--LP-PGLQELSVSDN-QLASLPAL---PS  161 (622)
T ss_dssp             SCCCCCCTTCCEEEECS-CCCCCCCC---CCTTCCEEECCSS-CCSCCCC--CC-TTCCEEECCSS-CCSCCCCC---CT
T ss_pred             CcCCCCCCCCCEEECcC-CcCCCCCC---CCCCcCEEECCCC-CCCcCCC--CC-CCCCEEECcCC-cCCCcCCc---cC
Confidence            5555     88888877 56777773   5568888888874 5777764  34 78888888885 56666653   46


Q ss_pred             cccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEE
Q 039619          181 SLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLL  260 (459)
Q Consensus       181 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L  260 (459)
                      +|+.|+++++ .+..+|   ..+++|+.|++++| .++.+|.  .+++|+.|+++++.++...        ..+++|+.|
T Consensus       162 ~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L  226 (622)
T 3g06_A          162 ELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNRLTSLP--------ALPSGLKEL  226 (622)
T ss_dssp             TCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCC--------CCCTTCCEE
T ss_pred             CCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCC--ccchhhEEECcCCcccccC--------CCCCCCCEE
Confidence            7888888886 666676   35688888888775 4666654  4678888888887776432        235788888


Q ss_pred             EEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEee
Q 039619          261 TLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIY  339 (459)
Q Consensus       261 ~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~  339 (459)
                      ++++   +.+..+|.       .+++|++|++++ +.++.+|.  .+++|++|++++| +++.+|.. .-+++|+.|+++
T Consensus       227 ~Ls~---N~L~~lp~-------~l~~L~~L~Ls~-N~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          227 IVSG---NRLTSLPV-------LPSELKELMVSG-NRLTSLPM--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             ECCS---SCCSCCCC-------CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred             EccC---CccCcCCC-------CCCcCcEEECCC-CCCCcCCc--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence            8887   46777773       567889999988 68888874  5678888999885 67778752 126788889988


Q ss_pred             CCc
Q 039619          340 GCP  342 (459)
Q Consensus       340 ~c~  342 (459)
                      +++
T Consensus       293 ~N~  295 (622)
T 3g06_A          293 GNP  295 (622)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=3.8e-16  Score=166.39  Aligned_cols=310  Identities=9%  Similarity=0.016  Sum_probs=211.7

Q ss_pred             CCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC--
Q 039619           25 PKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC--  102 (459)
Q Consensus        25 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l--  102 (459)
                      ++|++|++.++... .........+++|+.|.+.++....           +...   ....+ ++|++|+++++..-  
T Consensus       248 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~---~~~~l-~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          248 TNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH-----------LFSH---SLHGL-FNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             SCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE-----------ECTT---TTTTC-TTCCEEECTTCBCCC-
T ss_pred             CCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc-----------cChh---hhcCC-CCccEEeccchhhhcc
Confidence            45999999887542 2223334568999999999775321           1111   11233 38999998764210  


Q ss_pred             ------C-----CCCccc-eeEEEEecCCCCccccC-CccccccCcEEEeecCC-Cceeeccc----cccccccceEEee
Q 039619          103 ------Y-----EPLTIP-VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCS-KLAFLSLR----GNLSKALKHLYII  164 (459)
Q Consensus       103 ------~-----~l~~lp-L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~-~l~~l~~~----~~lp~~L~~L~l~  164 (459)
                            .     .+..++ |++|+++++ .++.+++ ....+++|++|+++++. .+..++..    ... ++|+.|+++
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~-~~L~~L~L~  389 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLT  389 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT-SCCCEEECT
T ss_pred             cccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc-CcCceEECC
Confidence                  0     223344 999999885 4555442 34556799999999864 24444421    112 589999999


Q ss_pred             cccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccc
Q 039619          165 SCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYK  241 (459)
Q Consensus       165 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~  241 (459)
                      ++......|..+..+++|++|+++++.....+| ..+..+++|++|++++|. +..++..  ..+++|++|+++++.+..
T Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~  468 (680)
T 1ziw_A          390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKN  468 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred             CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccc
Confidence            975444446788899999999999985444565 567889999999999875 4455433  447899999999966642


Q ss_pred             --cccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC----------CCCCCCC
Q 039619          242 --PLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS----------SIENLTS  309 (459)
Q Consensus       242 --~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----------~l~~l~~  309 (459)
                        .. +.   .+..+++|+.|++++   +.+..++...   ...+++|++|++++ +.++.++          .+..+++
T Consensus       469 ~~~~-p~---~~~~l~~L~~L~Ls~---N~l~~i~~~~---~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~  537 (680)
T 1ziw_A          469 VDSS-PS---PFQPLRNLTILDLSN---NNIANINDDM---LEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSH  537 (680)
T ss_dssp             TTCS-SC---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred             cccC-Cc---ccccCCCCCEEECCC---CCCCcCChhh---hccccccCEEeCCC-CCccccchhhccCCcchhhcCCCC
Confidence              22 33   678999999999998   4676776542   13678999999999 6777653          2678999


Q ss_pred             CCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCce
Q 039619          310 FESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCH  370 (459)
Q Consensus       310 L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~  370 (459)
                      |++|+++++ +++.+|...+  +++|+.|+++++. ++...    ...+..+..+..+.+.++
T Consensus       538 L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~----~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          538 LHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNTLP----ASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC----TTTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCcCC----HhHhCCCCCCCEEECCCC
Confidence            999999985 7888886433  6899999998874 22211    112344567777888776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=4.5e-16  Score=157.71  Aligned_cols=51  Identities=25%  Similarity=0.340  Sum_probs=26.2

Q ss_pred             CCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619          285 ASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC  341 (459)
Q Consensus       285 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c  341 (459)
                      ++|++|++++ +.++.+|.  .+++|++|++++| +++.+|.  .+++|++|+++++
T Consensus       317 ~~L~~L~Ls~-N~l~~lp~--~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N  367 (454)
T 1jl5_A          317 PSLEELNVSN-NKLIELPA--LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN  367 (454)
T ss_dssp             TTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred             CcCCEEECCC-Cccccccc--cCCcCCEEECCCC-ccccccc--hhhhccEEECCCC
Confidence            4555555555 44554441  1355555555553 4455554  3455566655554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=1.1e-16  Score=162.30  Aligned_cols=213  Identities=17%  Similarity=0.174  Sum_probs=172.4

Q ss_pred             CCCCCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeecc--ccc
Q 039619           86 PVSVTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLSL--RGN  153 (459)
Q Consensus        86 ~lp~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~~--~~~  153 (459)
                      .+|+++++|+++++    .+..+        + |++|+++++ .++.++ .....+++|++|+++++ .++.++.  ...
T Consensus        72 ~~~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  145 (452)
T 3zyi_A           72 GIPSNTRYLNLMEN----NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEY  145 (452)
T ss_dssp             CCCTTCSEEECCSS----CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSS
T ss_pred             CCCCCccEEECcCC----cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcc
Confidence            46679999999995    44444        3 999999884 666665 33455679999999995 6777773  356


Q ss_pred             cccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccE
Q 039619          154 LSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLAS  231 (459)
Q Consensus       154 lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~  231 (459)
                      + ++|++|+++++ .++.+|. .+..+++|++|++++|..++.++. .+..+++|++|++++| .+..+|....+++|++
T Consensus       146 l-~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~  222 (452)
T 3zyi_A          146 L-SKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEE  222 (452)
T ss_dssp             C-TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCE
T ss_pred             c-CCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccE
Confidence            7 89999999996 5677754 688899999999999988888876 4788999999999886 5777887677899999


Q ss_pred             EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEeecCCCCCccC--CCCCCC
Q 039619          232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS--SIENLT  308 (459)
Q Consensus       232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~  308 (459)
                      |++++|.+.... +.   .+.++++|++|++++   +.+..++. .+    ..+++|+.|++++ +.++.++  .+..++
T Consensus       223 L~Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---n~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          223 LEMSGNHFPEIR-PG---SFHGLSSLKKLWVMN---SQVSLIERNAF----DGLASLVELNLAH-NNLSSLPHDLFTPLR  290 (452)
T ss_dssp             EECTTSCCSEEC-GG---GGTTCTTCCEEECTT---SCCCEECTTTT----TTCTTCCEEECCS-SCCSCCCTTSSTTCT
T ss_pred             EECcCCcCcccC-cc---cccCccCCCEEEeCC---CcCceECHHHh----cCCCCCCEEECCC-CcCCccChHHhcccc
Confidence            999998887655 55   789999999999999   45555543 33    3678999999999 7899988  678899


Q ss_pred             CCCEEeccCCC
Q 039619          309 SFESLQLCCCP  319 (459)
Q Consensus       309 ~L~~L~l~~c~  319 (459)
                      +|++|++++++
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            99999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=161.56  Aligned_cols=238  Identities=16%  Similarity=0.167  Sum_probs=145.3

Q ss_pred             CCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeecc--cccc
Q 039619           87 VSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLSL--RGNL  154 (459)
Q Consensus        87 lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~~--~~~l  154 (459)
                      ++++|++|+++++    .+..+|         |++|+++++ .++.+++ ....+++|++|+++++ .++.++.  .+.+
T Consensus        50 ~~~~L~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l  123 (353)
T 2z80_A           50 LTEAVKSLDLSNN----RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPL  123 (353)
T ss_dssp             CCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTC
T ss_pred             ccccCcEEECCCC----cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCC
Confidence            4457888888774    333333         777777664 5555542 2444567777777774 5566653  2456


Q ss_pred             ccccceEEeecccCCccccc--cCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccc-cCC-CCCCCc
Q 039619          155 SKALKHLYIISCSNLESIAE--GLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSF-TAN-CFPTNL  229 (459)
Q Consensus       155 p~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l-p~~-~~~~~L  229 (459)
                       ++|++|+++++ .++.+|.  .+..+++|++|++++|..+..+ +..+..+++|++|++++|. +..+ |.. ..+++|
T Consensus       124 -~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          124 -SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNV  200 (353)
T ss_dssp             -TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEE
T ss_pred             -ccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccC
Confidence             77777777774 5566655  5667777777777777555554 3456677777777777754 3333 322 346677


Q ss_pred             cEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-----ccC-C
Q 039619          230 ASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-----RIS-S  303 (459)
Q Consensus       230 ~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~-~  303 (459)
                      ++|+++++.+.... ..   .+..+++|++|++++   +.+..++...-........++.+++++ ..+.     .+| .
T Consensus       201 ~~L~l~~n~l~~~~-~~---~~~~~~~L~~L~L~~---n~l~~~~~~~l~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~  272 (353)
T 2z80_A          201 SHLILHMKQHILLL-EI---FVDVTSSVECLELRD---TDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESLFQVMKL  272 (353)
T ss_dssp             EEEEEECSCSTTHH-HH---HHHHTTTEEEEEEES---CBCTTCCCC------CCCCCCEEEEES-CBCCHHHHHHHHHH
T ss_pred             CeecCCCCccccch-hh---hhhhcccccEEECCC---Cccccccccccccccccchhhcccccc-ccccCcchhhhHHH
Confidence            77777776654322 11   233467777777777   233333221100001344566666666 3333     244 5


Q ss_pred             CCCCCCCCEEeccCCCCCCcCCCCC--CCCCcceEEeeCCc
Q 039619          304 IENLTSFESLQLCCCPKLQKFPDNG--LPTSLLRLEIYGCP  342 (459)
Q Consensus       304 l~~l~~L~~L~l~~c~~l~~lp~~~--l~~sL~~L~i~~c~  342 (459)
                      +..+++|++|++++| +++.+|...  -+++|++|++++++
T Consensus       273 l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          273 LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            667889999999985 677888743  26889999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=8e-16  Score=149.21  Aligned_cols=272  Identities=16%  Similarity=0.123  Sum_probs=189.9

Q ss_pred             CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCCC
Q 039619           26 KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEP  105 (459)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~l  105 (459)
                      +++.+++.+..- ..+..   ...+.++.|.+.++...           .+...   ....++ +|++|+++++    .+
T Consensus        32 ~l~~l~~~~~~l-~~lp~---~~~~~l~~L~L~~n~i~-----------~~~~~---~~~~l~-~L~~L~L~~n----~l   88 (330)
T 1xku_A           32 HLRVVQCSDLGL-EKVPK---DLPPDTALLDLQNNKIT-----------EIKDG---DFKNLK-NLHTLILINN----KI   88 (330)
T ss_dssp             ETTEEECTTSCC-CSCCC---SCCTTCCEEECCSSCCC-----------CBCTT---TTTTCT-TCCEEECCSS----CC
T ss_pred             CCeEEEecCCCc-cccCc---cCCCCCeEEECCCCcCC-----------EeChh---hhccCC-CCCEEECCCC----cC
Confidence            677777765432 22211   12478999999877422           11111   122344 8999999985    33


Q ss_pred             Ccc--------c-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCC--ccc
Q 039619          106 LTI--------P-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNL--ESI  172 (459)
Q Consensus       106 ~~l--------p-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l--~~l  172 (459)
                      ..+        + |++|++++ +.++.+|....  ++|++|+++++ .+..++.  ...+ ++|++|+++++..-  ...
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~  163 (330)
T 1xku_A           89 SKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGL-NQMIVVELGTNPLKSSGIE  163 (330)
T ss_dssp             CCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBC
T ss_pred             CeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCC-ccccEEECCCCcCCccCcC
Confidence            333        3 99999988 56778884432  69999999985 5666653  3667 89999999986432  134


Q ss_pred             cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCC
Q 039619          173 AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPG  250 (459)
Q Consensus       173 p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~  250 (459)
                      +..+..+++|++|+++++ .+..+|..+.  ++|++|+++++. ++.++..  ..+++|++|+++++.++... +.   .
T Consensus       164 ~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~---~  235 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVD-NG---S  235 (330)
T ss_dssp             TTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEEC-TT---T
T ss_pred             hhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeC-hh---h
Confidence            667888999999999997 6777877653  899999999864 5555432  45789999999998887544 33   5


Q ss_pred             CCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCC------CCCCCCEEeccCCCCCC
Q 039619          251 LHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIE------NLTSFESLQLCCCPKLQ  322 (459)
Q Consensus       251 l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~------~l~~L~~L~l~~c~~l~  322 (459)
                      +..+++|++|++++   +.+..+|..+    ..+++|++|++++ +.++.++  .+.      ..+.|+.|++.+++-..
T Consensus       236 ~~~l~~L~~L~L~~---N~l~~lp~~l----~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          236 LANTPHLRELHLNN---NKLVKVPGGL----ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             GGGSTTCCEEECCS---SCCSSCCTTT----TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccCCCCCCEEECCC---CcCccCChhh----ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            78899999999999   4777888866    3778999999999 7888887  332      34789999999865321


Q ss_pred             -cCCCCCC--CCCcceEEeeCC
Q 039619          323 -KFPDNGL--PTSLLRLEIYGC  341 (459)
Q Consensus       323 -~lp~~~l--~~sL~~L~i~~c  341 (459)
                       .++...+  ..+++.++++++
T Consensus       308 ~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          308 WEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGSCGGGGTTCCCGGGEEC---
T ss_pred             cccCccccccccceeEEEeccc
Confidence             2332222  567888887765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=8.2e-17  Score=159.92  Aligned_cols=228  Identities=15%  Similarity=0.104  Sum_probs=129.6

Q ss_pred             eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccc-cccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L  185 (459)
                      |++|+++++ .++.+++. ...+++|++|+++++ .++.+|.  ...+ ++|++|+++++ .+..+ +..+..+++|++|
T Consensus        95 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A           95 IQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNT-PKLTTLSMSNN-NLERIEDDTFQATTSLQNL  170 (390)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSS-CCCBCCTTTTSSCTTCCEE
T ss_pred             cCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCC-CCCcEEECCCC-ccCccChhhccCCCCCCEE
Confidence            555555442 23333221 233345555555442 3444442  1334 45555555543 22333 2334445555555


Q ss_pred             eeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619          186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG  265 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~  265 (459)
                      +++++ .++.++  +..+++|+.|+++++ .+..+   ..+++|++|+++++.+....       ....++|+.|++++ 
T Consensus       171 ~l~~n-~l~~~~--~~~l~~L~~L~l~~n-~l~~~---~~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~-  235 (390)
T 3o6n_A          171 QLSSN-RLTHVD--LSLIPSLFHANVSYN-LLSTL---AIPIAVEELDASHNSINVVR-------GPVNVELTILKLQH-  235 (390)
T ss_dssp             ECCSS-CCSBCC--GGGCTTCSEEECCSS-CCSEE---ECCSSCSEEECCSSCCCEEE-------CCCCSSCCEEECCS-
T ss_pred             ECCCC-cCCccc--cccccccceeecccc-ccccc---CCCCcceEEECCCCeeeecc-------ccccccccEEECCC-
Confidence            55544 233221  234445555555443 22222   23456777777776665322       13457899999998 


Q ss_pred             cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCC-CCCCcceEEeeCCc
Q 039619          266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNG-LPTSLLRLEIYGCP  342 (459)
Q Consensus       266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~-l~~sL~~L~i~~c~  342 (459)
                        +.+...+. .    ..+++|++|++++ +.++.++  .+..+++|++|++++| +++.++... -+++|++|++++|.
T Consensus       236 --n~l~~~~~-l----~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          236 --NNLTDTAW-L----LNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             --SCCCCCGG-G----GGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred             --CCCcccHH-H----cCCCCccEEECCC-CcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc
Confidence              35555443 2    2678999999999 6777764  7889999999999995 677777532 36899999999985


Q ss_pred             hhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619          343 LIEERFEKDKGQYWSLIADIPCVRIDCHY  371 (459)
Q Consensus       343 ~L~~~~~~~~~~~~~~i~~i~~l~~~~~~  371 (459)
                       +....     .......++..+.+.++.
T Consensus       307 -l~~~~-----~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          307 -LLHVE-----RNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             -CCCCG-----GGHHHHTTCSEEECCSSC
T ss_pred             -ceecC-----ccccccCcCCEEECCCCc
Confidence             22211     122345677788887764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=1.5e-16  Score=160.73  Aligned_cols=214  Identities=15%  Similarity=0.159  Sum_probs=172.4

Q ss_pred             CCCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeecc--ccc
Q 039619           86 PVSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLSL--RGN  153 (459)
Q Consensus        86 ~lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~~--~~~  153 (459)
                      .+|+++++|+++++    .+..++         |++|+|+++ .++.++. ....+++|++|+++++ .++.++.  ...
T Consensus        61 ~~~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  134 (440)
T 3zyj_A           61 GISTNTRLLNLHEN----QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY  134 (440)
T ss_dssp             CCCTTCSEEECCSC----CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred             CCCCCCcEEEccCC----cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhc
Confidence            45678999999995    444443         999999884 5766652 3345679999999995 7888773  467


Q ss_pred             cccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccE
Q 039619          154 LSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLAS  231 (459)
Q Consensus       154 lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~  231 (459)
                      + ++|++|+++++ .+..++. .+..+++|++|++++|..+..++. .+..+++|++|++++| .++.+|....+++|++
T Consensus       135 l-~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~  211 (440)
T 3zyj_A          135 L-SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDE  211 (440)
T ss_dssp             C-SSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCE
T ss_pred             c-ccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCE
Confidence            7 89999999995 5667754 688899999999999888887775 5788999999999986 6778887677899999


Q ss_pred             EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCC
Q 039619          232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTS  309 (459)
Q Consensus       232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~  309 (459)
                      |++++|.++... +.   .+..+++|++|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..+++
T Consensus       212 L~Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          212 LDLSGNHLSAIR-PG---SFQGLMHLQKLWMIQ---SQIQVIERNA---FDNLQSLVEINLAH-NNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             EECTTSCCCEEC-TT---TTTTCTTCCEEECTT---CCCCEECTTS---STTCTTCCEEECTT-SCCCCCCTTTTSSCTT
T ss_pred             EECCCCccCccC-hh---hhccCccCCEEECCC---CceeEEChhh---hcCCCCCCEEECCC-CCCCccChhHhccccC
Confidence            999998887654 44   789999999999998   4666665432   13678999999999 7899988  6788999


Q ss_pred             CCEEeccCCC
Q 039619          310 FESLQLCCCP  319 (459)
Q Consensus       310 L~~L~l~~c~  319 (459)
                      |+.|++++++
T Consensus       281 L~~L~L~~Np  290 (440)
T 3zyj_A          281 LERIHLHHNP  290 (440)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEcCCCC
Confidence            9999999865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.72  E-value=2.6e-16  Score=152.80  Aligned_cols=271  Identities=13%  Similarity=0.103  Sum_probs=191.5

Q ss_pred             CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCCC
Q 039619           26 KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEP  105 (459)
Q Consensus        26 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~l  105 (459)
                      +++.+++.+..- +....   ..+++++.|.+.++...           .+...   ....++ +|++|++++|    .+
T Consensus        34 ~l~~l~~~~~~l-~~ip~---~~~~~l~~L~l~~n~i~-----------~~~~~---~~~~l~-~L~~L~L~~n----~l   90 (332)
T 2ft3_A           34 HLRVVQCSDLGL-KAVPK---EISPDTTLLDLQNNDIS-----------ELRKD---DFKGLQ-HLYALVLVNN----KI   90 (332)
T ss_dssp             ETTEEECCSSCC-SSCCS---CCCTTCCEEECCSSCCC-----------EECTT---TTTTCT-TCCEEECCSS----CC
T ss_pred             cCCEEECCCCCc-cccCC---CCCCCCeEEECCCCcCC-----------ccCHh---HhhCCC-CCcEEECCCC----cc
Confidence            577777765432 22211   23578999999877522           11111   122344 8999999995    34


Q ss_pred             Ccc--------c-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCc---c
Q 039619          106 LTI--------P-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLE---S  171 (459)
Q Consensus       106 ~~l--------p-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~---~  171 (459)
                      ..+        + |++|++++ +.++.+|....  ++|++|+++++ .++.++.  ...+ ++|++|+++++. ++   .
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l-~~L~~L~l~~n~-l~~~~~  164 (332)
T 2ft3_A           91 SKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGL-RNMNCIEMGGNP-LENSGF  164 (332)
T ss_dssp             CEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSC-SSCCEEECCSCC-CBGGGS
T ss_pred             CccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCC-ccCCEEECCCCc-cccCCC
Confidence            444        3 99999988 56778885433  69999999985 6777763  3677 899999999864 43   3


Q ss_pred             ccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCC
Q 039619          172 IAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGP  249 (459)
Q Consensus       172 lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~  249 (459)
                      .+..+..+ +|++|+++++ .+..+|..+.  ++|++|+++++ .++.++..  ..+++|++|+++++.+.... +.   
T Consensus       165 ~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~---  235 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NG---  235 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TT---
T ss_pred             CcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCC-hh---
Confidence            45667767 9999999998 5777887654  79999999886 45565533  45789999999998887654 33   


Q ss_pred             CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCC------CCCCCEEeccCCCCC
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIEN------LTSFESLQLCCCPKL  321 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~------l~~L~~L~l~~c~~l  321 (459)
                      .+..+++|++|++++   +.+..+|..+    ..+++|++|++++ +.++.++  .+..      .++|+.|++.+++..
T Consensus       236 ~~~~l~~L~~L~L~~---N~l~~lp~~l----~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          236 SLSFLPTLRELHLDN---NKLSRVPAGL----PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GGGGCTTCCEEECCS---SCCCBCCTTG----GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             HhhCCCCCCEEECCC---CcCeecChhh----hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCccc
Confidence            578899999999998   4777888876    3788999999999 7888887  3322      477999999997633


Q ss_pred             C-cCCCCCC--CCCcceEEeeCCc
Q 039619          322 Q-KFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       322 ~-~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      . .++...+  +++|+.++++++.
T Consensus       308 ~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          308 YWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccCcccccccchhhhhhccccc
Confidence            1 3443222  6789999988764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.72  E-value=2e-15  Score=164.71  Aligned_cols=144  Identities=13%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             CcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCcc
Q 039619          180 TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSV  257 (459)
Q Consensus       180 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L  257 (459)
                      ++|+.|+++++......|..+..+++|+.|+++++. +..++..  ..+++|++|++++|.+.... +.   .+..+++|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~~~~l~~L  340 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELY-SS---NFYGLPKV  340 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCC-SC---SCSSCTTC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccC-HH---HhcCCCCC
Confidence            344555554442222223344455555555555432 3333221  22455555555555444332 22   44555555


Q ss_pred             CEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEE
Q 039619          258 RLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLE  337 (459)
Q Consensus       258 ~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~  337 (459)
                      +.|++++   +.+..++...   ...+++|+.|++++ +.++.++   .+++|+.|+++++ ++..+|.  ...+++.|+
T Consensus       341 ~~L~L~~---N~i~~~~~~~---~~~l~~L~~L~Ls~-N~l~~i~---~~~~L~~L~l~~N-~l~~l~~--~~~~l~~L~  407 (844)
T 3j0a_A          341 AYIDLQK---NHIAIIQDQT---FKFLEKLQTLDLRD-NALTTIH---FIPSIPDIFLSGN-KLVTLPK--INLTANLIH  407 (844)
T ss_dssp             CEEECCS---CCCCCCCSSC---SCSCCCCCEEEEET-CCSCCCS---SCCSCSEEEEESC-CCCCCCC--CCTTCCEEE
T ss_pred             CEEECCC---CCCCccChhh---hcCCCCCCEEECCC-CCCCccc---CCCCcchhccCCC-Ccccccc--cccccceee
Confidence            5555555   2333333321   01345555555555 3444332   2445555555553 3444443  234455555


Q ss_pred             eeCC
Q 039619          338 IYGC  341 (459)
Q Consensus       338 i~~c  341 (459)
                      ++++
T Consensus       408 ls~N  411 (844)
T 3j0a_A          408 LSEN  411 (844)
T ss_dssp             CCSC
T ss_pred             cccC
Confidence            5443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.72  E-value=7.3e-16  Score=161.42  Aligned_cols=231  Identities=21%  Similarity=0.223  Sum_probs=182.0

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC  102 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l  102 (459)
                      -+++|++|++.++... ....    .+++|+.|.+.++...           .++        ..+++|++|+++++   
T Consensus        59 l~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-----------~lp--------~~l~~L~~L~Ls~N---  111 (622)
T 3g06_A           59 LPAHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-----------SLP--------VLPPGLLELSIFSN---  111 (622)
T ss_dssp             CCTTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-----------CCC--------CCCTTCCEEEECSC---
T ss_pred             hCCCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-----------cCC--------CCCCCCCEEECcCC---
Confidence            3579999999887542 2222    5789999999987521           011        13469999999995   


Q ss_pred             CCCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCC
Q 039619          103 YEPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLD  177 (459)
Q Consensus       103 ~~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~  177 (459)
                       .+..+|     |+.|++++ +.++.+|.   .+++|++|++++| .+..+|.  .+ ++|+.|+++++ .++.+|   .
T Consensus       112 -~l~~l~~~l~~L~~L~L~~-N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~--~~-~~L~~L~L~~N-~l~~l~---~  178 (622)
T 3g06_A          112 -PLTHLPALPSGLCKLWIFG-NQLTSLPV---LPPGLQELSVSDN-QLASLPA--LP-SELCKLWAYNN-QLTSLP---M  178 (622)
T ss_dssp             -CCCCCCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC-TTCCEEECCSS-CCSCCC---C
T ss_pred             -cCCCCCCCCCCcCEEECCC-CCCCcCCC---CCCCCCEEECcCC-cCCCcCC--cc-CCCCEEECCCC-CCCCCc---c
Confidence             555555     99999988 56888884   3479999999996 6777763  33 89999999985 677887   4


Q ss_pred             CCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCcc
Q 039619          178 DNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSV  257 (459)
Q Consensus       178 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L  257 (459)
                      .+++|+.|++++| .+..+|..   +++|+.|++++| .++.+|.  .+++|++|++++|.++...        ..+++|
T Consensus       179 ~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~L~~lp--------~~l~~L  243 (622)
T 3g06_A          179 LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSEL  243 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSCCSCCC--------CCCTTC
T ss_pred             cCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCC--CCCCCCEEEccCCccCcCC--------CCCCcC
Confidence            4789999999997 67777753   578999999885 5677764  4689999999999887432        467899


Q ss_pred             CEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619          258 RLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP  319 (459)
Q Consensus       258 ~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~  319 (459)
                      +.|++++   +.+..+|.       .+++|+.|++++ +.++.+| .+..+++|+.|++++|+
T Consensus       244 ~~L~Ls~---N~L~~lp~-------~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          244 KELMVSG---NRLTSLPM-------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CEEECCS---SCCSCCCC-------CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             cEEECCC---CCCCcCCc-------ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence            9999999   47888887       568999999999 6899999 88999999999999975

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.71  E-value=5.9e-17  Score=156.16  Aligned_cols=219  Identities=13%  Similarity=0.081  Sum_probs=167.6

Q ss_pred             eeEEEEecCCCCc--cccCCccccccCcEEEeecCCCce-eec-cccccccccceEEeecccCCccccccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLT--SLWSKSELPATLENIYVDRCSKLA-FLS-LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~--~lp~~~~~~~~L~~L~l~~c~~l~-~l~-~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  185 (459)
                      +++|+++++.--.  .+|.....+++|++|++++++.+. .+| ..+.+ ++|++|+++++.....+|..+..+++|++|
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            8999999854433  677677777899999999645555 555 33678 999999999975444788889999999999


Q ss_pred             eeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCC-CCccEEEEecCcccccccccCCCCCCCCCccCEEEEe
Q 039619          186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFP-TNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLF  263 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~-~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~  263 (459)
                      +++++.-...+|..+..+++|++|+++++..-..+|.. ..+ ++|++|+++++.+.... +.   .+..++ |++|+++
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~-~~---~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-PP---TFANLN-LAFVDLS  205 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-CG---GGGGCC-CSEEECC
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-Ch---HHhCCc-ccEEECc
Confidence            99998544478888999999999999987543366654 334 49999999998887554 44   667776 9999999


Q ss_pred             CCcCCCce-ecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeC
Q 039619          264 GGECCGVV-SFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYG  340 (459)
Q Consensus       264 ~~~c~~l~-~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~  340 (459)
                      +   +.+. ..|..+    ..+++|+.|++++ +.++..+ .+..+++|++|++++|.--..+|.. .-+++|++|++++
T Consensus       206 ~---N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          206 R---NMLEGDASVLF----GSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             S---SEEEECCGGGC----CTTSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             C---CcccCcCCHHH----hcCCCCCEEECCC-CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            8   3444 344444    3678999999999 6666544 7778899999999996543366652 2268999999999


Q ss_pred             Cc
Q 039619          341 CP  342 (459)
Q Consensus       341 c~  342 (459)
                      +.
T Consensus       278 N~  279 (313)
T 1ogq_A          278 NN  279 (313)
T ss_dssp             SE
T ss_pred             Cc
Confidence            85

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=1.4e-15  Score=158.53  Aligned_cols=152  Identities=18%  Similarity=0.206  Sum_probs=120.8

Q ss_pred             CCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccC----CCCCCCccEEEEecCcccccccccCCCCCC
Q 039619          177 DDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTA----NCFPTNLASVCIDYEKIYKPLILERGPGLH  252 (459)
Q Consensus       177 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~  252 (459)
                      ..+++|++|+++++.-...+|..+..+++|++|+++++ .++.++.    ...+++|++|+++++.+.... +.  ..+.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~--~~~~  425 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHA-YD--RTCA  425 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC-SS--CCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCcc-Ch--hhhc
Confidence            67889999999998555557888899999999999986 5665542    245799999999998887633 22  2477


Q ss_pred             CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--
Q 039619          253 RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGL--  329 (459)
Q Consensus       253 ~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--  329 (459)
                      .+++|++|++++  |.-...+|..      .+++|++|++++ +.++.+| .+..+++|++|+++++ +++.+|...+  
T Consensus       426 ~l~~L~~L~l~~--n~l~~~~~~~------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~  495 (562)
T 3a79_B          426 WAESILVLNLSS--NMLTGSVFRC------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDR  495 (562)
T ss_dssp             CCTTCCEEECCS--SCCCGGGGSS------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTT
T ss_pred             CcccCCEEECCC--CCCCcchhhh------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhc
Confidence            899999999999  4433445543      337999999999 6999999 7779999999999995 7888987423  


Q ss_pred             CCCcceEEeeCCc
Q 039619          330 PTSLLRLEIYGCP  342 (459)
Q Consensus       330 ~~sL~~L~i~~c~  342 (459)
                      +++|+.|+++++|
T Consensus       496 l~~L~~L~l~~N~  508 (562)
T 3a79_B          496 LTSLQYIWLHDNP  508 (562)
T ss_dssp             CTTCCCEECCSCC
T ss_pred             CCCCCEEEecCCC
Confidence            6899999999976

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.71  E-value=3.8e-16  Score=148.29  Aligned_cols=205  Identities=17%  Similarity=0.249  Sum_probs=141.2

Q ss_pred             CCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCccc
Q 039619          119 PSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKA  195 (459)
Q Consensus       119 ~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~  195 (459)
                      ..++.+|.  ..+++|++|+++++ .++.++.  ...+ ++|++|+++++ .++.+ |..+..+++|++|+++++..+..
T Consensus        21 ~~l~~ip~--~~~~~l~~L~l~~n-~i~~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~   95 (285)
T 1ozn_A           21 QGLQAVPV--GIPAASQRIFLHGN-RISHVPAASFRAC-RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS   95 (285)
T ss_dssp             SCCSSCCT--TCCTTCSEEECTTS-CCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             CCcccCCc--CCCCCceEEEeeCC-cCCccCHHHcccC-CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence            45666662  24557888888774 5666652  3556 77888888775 45555 56677788888888887754665


Q ss_pred             C-cccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCcee
Q 039619          196 L-PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS  272 (459)
Q Consensus       196 l-p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~  272 (459)
                      + |..+..+++|++|+++++. +..++..  ..+++|++|+++++.+.... +.   .+..+++|++|++++   +.+..
T Consensus        96 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~l~~---n~l~~  167 (285)
T 1ozn_A           96 VDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALP-DD---TFRDLGNLTHLFLHG---NRISS  167 (285)
T ss_dssp             CCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCE
T ss_pred             cCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccC-Hh---HhccCCCccEEECCC---Ccccc
Confidence            5 5567778888888887754 4444332  34678888888887766443 22   467888888888888   46666


Q ss_pred             cCCC-CCCCccCCCCcceEEeecCCCCCcc-C-CCCCCCCCCEEeccCCCCCCcCCCC--CCCCCcceEEeeCCc
Q 039619          273 FPPE-KDTGKALPASLKHLSIWNFPNLERI-S-SIENLTSFESLQLCCCPKLQKFPDN--GLPTSLLRLEIYGCP  342 (459)
Q Consensus       273 l~~~-~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~l~~c~~l~~lp~~--~l~~sL~~L~i~~c~  342 (459)
                      ++.. +    ..+++|++|++++ +.++.+ + .+..+++|++|++++| .++.++..  .-+++|+.|++++++
T Consensus       168 ~~~~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          168 VPERAF----RGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             ECTTTT----TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cCHHHh----cCccccCEEECCC-CcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence            6653 3    2567888888888 567766 3 7788888999999885 66666642  225788888888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=2.7e-16  Score=165.04  Aligned_cols=248  Identities=15%  Similarity=0.070  Sum_probs=158.4

Q ss_pred             CcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccc
Q 039619           90 TLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKA  157 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~  157 (459)
                      +|++|+++++    .+..+|         |++|++++| .++.+++. ...+++|++|+++++ .+..+|.  .+.+ ++
T Consensus        76 ~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l-~~  148 (597)
T 3oja_B           76 QVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNT-PK  148 (597)
T ss_dssp             CCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TT
T ss_pred             CCcEEECCCC----CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccC-CC
Confidence            7888888875    333332         888888774 45555533 355568888888875 5667763  3566 78


Q ss_pred             cceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCC------------------CCc
Q 039619          158 LKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCP------------------TIG  218 (459)
Q Consensus       158 L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~------------------~l~  218 (459)
                      |++|+++++ .+..+ |..+..+++|++|+++++ .+..++  +..+++|+.|+++++.                  .+.
T Consensus       149 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          149 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             CCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred             CCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence            888888876 34444 456777888888888876 444432  2334444444444321                  222


Q ss_pred             cccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCC
Q 039619          219 SFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNL  298 (459)
Q Consensus       219 ~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l  298 (459)
                      .++. ..+++|+.|+++++.++++.      .+..+++|+.|++++  |.-....|..+    ..+++|+.|++++ +.+
T Consensus       225 ~~~~-~~~~~L~~L~L~~n~l~~~~------~l~~l~~L~~L~Ls~--N~l~~~~~~~~----~~l~~L~~L~Ls~-N~l  290 (597)
T 3oja_B          225 VVRG-PVNVELTILKLQHNNLTDTA------WLLNYPGLVEVDLSY--NELEKIMYHPF----VKMQRLERLYISN-NRL  290 (597)
T ss_dssp             EEEC-SCCSCCCEEECCSSCCCCCG------GGGGCTTCSEEECCS--SCCCEEESGGG----TTCSSCCEEECTT-SCC
T ss_pred             cccc-ccCCCCCEEECCCCCCCCCh------hhccCCCCCEEECCC--CccCCCCHHHh----cCccCCCEEECCC-CCC
Confidence            2322 23456777777777776544      567788888888888  33333335444    2677888888888 678


Q ss_pred             CccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619          299 ERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY  371 (459)
Q Consensus       299 ~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~  371 (459)
                      +.++ ....+++|++|++++| .+..+|.. +-+++|+.|++++|..-.        .....+..+..+.+.++.
T Consensus       291 ~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          291 VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVT--------LKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCC--------CCCCTTCCCSEEECCSSC
T ss_pred             CCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCC--------cChhhcCCCCEEEeeCCC
Confidence            8888 6677888888988885 56667642 125788888888886311        123344566677776554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=1.6e-15  Score=144.01  Aligned_cols=194  Identities=19%  Similarity=0.213  Sum_probs=145.9

Q ss_pred             eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccc-cccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L  185 (459)
                      |++|++++ +.++.++. ....+++|++|+++++ .++.++  ....+ ++|++|+++++..++.+ |..+..+++|++|
T Consensus        34 l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           34 SQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CSEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             ceEEEeeC-CcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            66666655 44555553 2345568999999885 566663  23567 89999999987657777 6678889999999


Q ss_pred             eeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEe
Q 039619          186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLF  263 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~  263 (459)
                      +++++.-....|..+..+++|++|+++++ .++.++..  ..+++|++|+++++.++... +.   .+..+++|++|+++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP-ER---AFRGLHSLDRLLLH  185 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TT---TTTTCTTCCEEECC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC-HH---HhcCccccCEEECC
Confidence            99998433333566788999999999886 46666654  44789999999998877543 33   57889999999999


Q ss_pred             CCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619          264 GGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP  319 (459)
Q Consensus       264 ~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~  319 (459)
                      +  + .+..+ |..+    ..+++|++|++++ +.++.++  .+..+++|++|++++++
T Consensus       186 ~--n-~l~~~~~~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          186 Q--N-RVAHVHPHAF----RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             S--S-CCCEECTTTT----TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             C--C-cccccCHhHc----cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence            9  3 45544 5554    3678999999999 7888888  58889999999999865

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.68  E-value=1.4e-15  Score=158.32  Aligned_cols=230  Identities=16%  Similarity=0.170  Sum_probs=167.0

Q ss_pred             CCcCceEEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceE
Q 039619           89 VTLKDPEVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHL  161 (459)
Q Consensus        89 ~~L~~L~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L  161 (459)
                      ++|++|+++++    .+..+|       |++|++++| .+..+|. . .+++|++|+++++......+. ..+ ++|++|
T Consensus       282 ~~L~~L~l~~~----~l~~l~~~~~~~~L~~L~l~~n-~~~~l~~-~-~l~~L~~L~l~~n~~~~~~~~-~~~-~~L~~L  352 (570)
T 2z63_A          282 TNVSSFSLVSV----TIERVKDFSYNFGWQHLELVNC-KFGQFPT-L-KLKSLKRLTFTSNKGGNAFSE-VDL-PSLEFL  352 (570)
T ss_dssp             TTCSEEEEESC----EECSCCBCCSCCCCSEEEEESC-BCSSCCB-C-BCSSCCEEEEESCBSCCBCCC-CBC-TTCCEE
T ss_pred             CcccEEEecCc----cchhhhhhhccCCccEEeeccC-cccccCc-c-cccccCEEeCcCCcccccccc-ccC-CCCCEE
Confidence            47888888885    344555       888888875 4557773 3 445899999988754444443 566 889999


Q ss_pred             EeecccCCccc---cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccC-C--CCCCCccEEEEe
Q 039619          162 YIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTA-N--CFPTNLASVCID  235 (459)
Q Consensus       162 ~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~--~~~~~L~~L~l~  235 (459)
                      +++++ .+..+   +..+..+++|++|++++| .+..++..+..+++|++|++++|. +...+. .  ..+++|++|+++
T Consensus       353 ~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          353 DLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             ECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECT
T ss_pred             eCcCC-ccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCc
Confidence            99886 44443   566777889999999887 455566667788899999998864 333322 2  447889999998


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCc-eecCCCCCCCccCCCCcceEEeecCCCCCcc-C-CCCCCCCCCE
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGV-VSFPPEKDTGKALPASLKHLSIWNFPNLERI-S-SIENLTSFES  312 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l-~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~  312 (459)
                      ++.+.... +.   .+..+++|++|++++  |.-. ..+|..+    ..+++|++|++++ +.++.+ | .+..+++|++
T Consensus       430 ~n~l~~~~-~~---~~~~l~~L~~L~l~~--n~l~~~~~p~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          430 HTHTRVAF-NG---IFNGLSSLEVLKMAG--NSFQENFLPDIF----TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             TSCCEECC-TT---TTTTCTTCCEEECTT--CEEGGGEECSCC----TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCE
T ss_pred             CCcccccc-hh---hhhcCCcCcEEECcC--CcCccccchhhh----hcccCCCEEECCC-CccccCChhhhhcccCCCE
Confidence            87776544 44   678899999999998  4332 3577655    3678999999998 567766 4 7888999999


Q ss_pred             EeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          313 LQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       313 L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      |++++| +++.++...+  +++|++|++++++
T Consensus       499 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          499 LNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            999986 6777765433  6889999998865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=1.4e-15  Score=140.52  Aligned_cols=195  Identities=19%  Similarity=0.157  Sum_probs=136.9

Q ss_pred             eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L  185 (459)
                      |++|++++ +.++.++. ....+++|++|+++++..++.++.  ...+ ++|++|++++|+.++.++ ..+..+++|++|
T Consensus        33 l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           33 TQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             CCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             ccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            55555555 34555553 234456888888888655777763  3566 788888888766777776 456778888888


Q ss_pred             eeccccCcccCcccCCCCCCcc---EEeeccCCCCccccCC--CCCCCcc-EEEEecCcccccccccCCCCCCCCCccCE
Q 039619          186 EIFICQNLKALPNGLRNLTSLQ---YLLIQDCPTIGSFTAN--CFPTNLA-SVCIDYEKIYKPLILERGPGLHRFTSVRL  259 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~---~L~l~~c~~l~~lp~~--~~~~~L~-~L~l~~~~l~~~~~~~~~~~l~~l~~L~~  259 (459)
                      +++++ .++.+|. +..+++|+   +|++++++.++.++..  ..+++|+ +|+++++.++..  +.  ..+.. ++|++
T Consensus       111 ~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i--~~--~~~~~-~~L~~  183 (239)
T 2xwt_C          111 GIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV--QG--YAFNG-TKLDA  183 (239)
T ss_dssp             EEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE--CT--TTTTT-CEEEE
T ss_pred             eCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc--CH--hhcCC-CCCCE
Confidence            88887 5666775 66777777   8888887577777754  3367888 888888777632  22  13344 78999


Q ss_pred             EEEeCCcCCCceecCCCCCCCccCC-CCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCC
Q 039619          260 LTLFGGECCGVVSFPPEKDTGKALP-ASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPK  320 (459)
Q Consensus       260 L~l~~~~c~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~  320 (459)
                      |++++  +..+..++...   ...+ ++|+.|++++ +.++.+|. ..+++|+.|++.++..
T Consensus       184 L~L~~--n~~l~~i~~~~---~~~l~~~L~~L~l~~-N~l~~l~~-~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          184 VYLNK--NKYLTVIDKDA---FGGVYSGPSLLDVSQ-TSVTALPS-KGLEHLKELIARNTWT  238 (239)
T ss_dssp             EECTT--CTTCCEECTTT---TTTCSBCCSEEECTT-CCCCCCCC-TTCTTCSEEECTTC--
T ss_pred             EEcCC--CCCcccCCHHH---hhccccCCcEEECCC-CccccCCh-hHhccCceeeccCccC
Confidence            99998  44577776543   0245 7899999998 78888882 2688999999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=5.4e-16  Score=148.75  Aligned_cols=215  Identities=14%  Similarity=0.079  Sum_probs=160.5

Q ss_pred             CCCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccc---cCCccccccCcEEEeecCCCceeecc-cc
Q 039619           86 PVSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSL---WSKSELPATLENIYVDRCSKLAFLSL-RG  152 (459)
Q Consensus        86 ~lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~l---p~~~~~~~~L~~L~l~~c~~l~~l~~-~~  152 (459)
                      .+|++|++|+++++    .+..+|         |++|+++++ .++.+   +.....+++|++|+++++ .+..+|. ..
T Consensus        25 ~~~~~l~~L~L~~n----~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~   98 (306)
T 2z66_A           25 GIPSSATRLELESN----KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFL   98 (306)
T ss_dssp             CCCTTCCEEECCSS----CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEE
T ss_pred             CCCCCCCEEECCCC----ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-ccccChhhcC
Confidence            45678999999985    344444         999999874 55544   223334569999999985 5667763 35


Q ss_pred             ccccccceEEeecccCCcccc--ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCc-cccCC-CCCCC
Q 039619          153 NLSKALKHLYIISCSNLESIA--EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIG-SFTAN-CFPTN  228 (459)
Q Consensus       153 ~lp~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~-~~~~~  228 (459)
                      .+ ++|++|+++++ .+..++  ..+..+++|++|+++++......+..+..+++|++|+++++.... .+|.. ..+++
T Consensus        99 ~l-~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           99 GL-EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             TC-TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             CC-CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            67 89999999985 566665  368889999999999985544556678889999999999875332 24543 55889


Q ss_pred             ccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCC
Q 039619          229 LASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIEN  306 (459)
Q Consensus       229 L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~  306 (459)
                      |++|+++++.++... +.   .+..+++|++|++++   +.+..++...   ...+++|++|++++ +.+...+  .+..
T Consensus       177 L~~L~Ls~n~l~~~~-~~---~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~  245 (306)
T 2z66_A          177 LTFLDLSQCQLEQLS-PT---AFNSLSSLQVLNMSH---NNFFSLDTFP---YKCLNSLQVLDYSL-NHIMTSKKQELQH  245 (306)
T ss_dssp             CCEEECTTSCCCEEC-TT---TTTTCTTCCEEECTT---SCCSBCCSGG---GTTCTTCCEEECTT-SCCCBCSSSSCCC
T ss_pred             CCEEECCCCCcCCcC-HH---HhcCCCCCCEEECCC---CccCccChhh---ccCcccCCEeECCC-CCCcccCHHHHHh
Confidence            999999998887654 44   678999999999998   4566655421   12578999999999 5676654  7777


Q ss_pred             CC-CCCEEeccCCC
Q 039619          307 LT-SFESLQLCCCP  319 (459)
Q Consensus       307 l~-~L~~L~l~~c~  319 (459)
                      ++ +|++|++++++
T Consensus       246 ~~~~L~~L~L~~N~  259 (306)
T 2z66_A          246 FPSSLAFLNLTQND  259 (306)
T ss_dssp             CCTTCCEEECTTCC
T ss_pred             hhccCCEEEccCCC
Confidence            74 99999999864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=8.5e-15  Score=143.28  Aligned_cols=216  Identities=18%  Similarity=0.151  Sum_probs=160.8

Q ss_pred             eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccc-cccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L  185 (459)
                      +++|+|++ +.++.+|+. ...+++|++|+|+++..++.++.  ...+ ++++++.+.+++.+..+ |..+..+++|++|
T Consensus        32 l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           32 AIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             CSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC-TTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc-hhhhhhhcccCCcccccCchhhhhccccccc
Confidence            67777766 567788743 35567999999999766677763  3466 77777666666788888 4567889999999


Q ss_pred             eeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCC---CCCCccEEEEecCcccccccccCCCCCCCCCccCEEE
Q 039619          186 EIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANC---FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLT  261 (459)
Q Consensus       186 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~  261 (459)
                      +++++ .+..+|. .+....++..|++.++..+..++...   ....++.|++++++++...  .   .....++|++|.
T Consensus       110 ~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~--~---~~f~~~~L~~l~  183 (350)
T 4ay9_X          110 LISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH--N---SAFNGTQLDELN  183 (350)
T ss_dssp             EEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC--T---TSSTTEEEEEEE
T ss_pred             ccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC--h---hhccccchhHHh
Confidence            99987 5665554 33456678888888888888887642   3457889999998887433  2   344567899999


Q ss_pred             EeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeC
Q 039619          262 LFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYG  340 (459)
Q Consensus       262 l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~  340 (459)
                      +.+  ++.++.+|.+.   ...+++|++|++++ +.++.+| ...+.+|+.|.+.++.+++.+|...-+++|+.+++.+
T Consensus       184 l~~--~n~l~~i~~~~---f~~l~~L~~LdLs~-N~l~~lp-~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          184 LSD--NNNLEELPNDV---FHGASGPVILDISR-TRIHSLP-SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CTT--CTTCCCCCTTT---TTTEECCSEEECTT-SCCCCCC-SSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             hcc--CCcccCCCHHH---hccCcccchhhcCC-CCcCccC-hhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            988  68899998753   12578999999998 7899998 2336788888888888999998743468899988864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=7.3e-15  Score=138.30  Aligned_cols=192  Identities=22%  Similarity=0.315  Sum_probs=123.7

Q ss_pred             cCcEEEeecCCCceeeccccccccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCccc-CCCCCCccEEe
Q 039619          133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPNG-LRNLTSLQYLL  210 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~  210 (459)
                      +.+.+++++ ..++.+|.  .+|+++++|+++++ .+..++. .+..+++|++|+++++ .+..+|.. +..+++|++|+
T Consensus        17 ~~~~l~~~~-~~l~~ip~--~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAIPS--NIPADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTT-SCCSSCCS--CCCTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccC-CCCCccCC--CCCCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence            455666655 35555552  23356677777664 4455543 5666777777777765 45555543 35677777777


Q ss_pred             eccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcc
Q 039619          211 IQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK  288 (459)
Q Consensus       211 l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~  288 (459)
                      ++++ .+..++..  ..+++|++|+++++.++... +.   .+..+++|++|++++   +.+..++...   ...+++|+
T Consensus        92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~Ls~---n~l~~~~~~~---~~~l~~L~  160 (270)
T 2o6q_A           92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLP-PR---VFDSLTKLTYLSLGY---NELQSLPKGV---FDKLTSLK  160 (270)
T ss_dssp             CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCC
T ss_pred             CCCC-cCCcCCHhHcccccCCCEEECCCCccCeeC-HH---HhCcCcCCCEEECCC---CcCCccCHhH---ccCCcccc
Confidence            7664 35555543  23567777777776665433 33   567788888888887   4566666542   12567888


Q ss_pred             eEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          289 HLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       289 ~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      +|++++ +.++.++  .+..+++|++|++++| .++.++...+  +++|+.|+++++|
T Consensus       161 ~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          161 ELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             EEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            888887 6777777  5777888888888885 6777776433  5788888887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.64  E-value=5.7e-15  Score=140.59  Aligned_cols=191  Identities=20%  Similarity=0.211  Sum_probs=108.1

Q ss_pred             cCcEEEeecCCCceeeccccccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619          133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI  211 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  211 (459)
                      +++++++++ ..++.+|.  .+|+++++|+++++ .+..+ +..+..+++|++|+++++ .+..++.. ..+++|++|++
T Consensus        11 ~l~~l~~~~-~~l~~ip~--~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           11 SHLEVNCDK-RNLTALPP--DLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             TCCEEECTT-SCCSSCCS--CCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred             CccEEECCC-CCCCcCCC--CCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence            455555544 34444442  12245555555553 23333 334555555555555554 34444332 45555555555


Q ss_pred             ccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceE
Q 039619          212 QDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHL  290 (459)
Q Consensus       212 ~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L  290 (459)
                      +++ .++.+|.. ..+++|++|++++++++... +.   .+..+++|++|++++   +.+..+|...   ...+++|+.|
T Consensus        85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-~~---~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L  153 (290)
T 1p9a_G           85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP-LG---ALRGLGELQELYLKG---NELKTLPPGL---LTPTPKLEKL  153 (290)
T ss_dssp             CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCC-SS---TTTTCTTCCEEECTT---SCCCCCCTTT---TTTCTTCCEE
T ss_pred             CCC-cCCcCchhhccCCCCCEEECCCCcCcccC-HH---HHcCCCCCCEEECCC---CCCCccChhh---cccccCCCEE
Confidence            543 34444432 33455566666555554332 22   567777888888877   4566666542   0245678888


Q ss_pred             EeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC-CCCcceEEeeCCc
Q 039619          291 SIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL-PTSLLRLEIYGCP  342 (459)
Q Consensus       291 ~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l-~~sL~~L~i~~c~  342 (459)
                      ++++ +.++.++  .+..+++|++|++++ +.++.+|.... .++|+.|+++++|
T Consensus       154 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          154 SLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             ECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence            8887 6777777  456788888888877 46777776433 4578888887765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=148.92  Aligned_cols=215  Identities=14%  Similarity=0.077  Sum_probs=161.5

Q ss_pred             CCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc---ccccc
Q 039619           89 VTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL---RGNLS  155 (459)
Q Consensus        89 ~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~---~~~lp  155 (459)
                      ++|++|+++++    .+..+        + |++|++++ +.++.++.. ...+++|++|+++++ .++.+|.   ...+ 
T Consensus        76 ~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l-  148 (353)
T 2z80_A           76 VNLQALVLTSN----GINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL-  148 (353)
T ss_dssp             TTCCEEECTTS----CCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC-
T ss_pred             CCCCEEECCCC----ccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccC-
Confidence            48999999985    33333        3 99999988 567777744 455679999999985 6777775   4677 


Q ss_pred             cccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEE
Q 039619          156 KALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASV  232 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L  232 (459)
                      ++|++|+++++..+..+ +..+..+++|++|+++++......|..+..+++|++|+++++. ++.++..  ..+++|++|
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECL  227 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEE
T ss_pred             CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEE
Confidence            99999999998777777 4678899999999999985444557888999999999998864 5666643  237899999


Q ss_pred             EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC----ceecCCCCCCCccCCCCcceEEeecCCCCCccC-C-CCC
Q 039619          233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG----VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-S-IEN  306 (459)
Q Consensus       233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~----l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~-l~~  306 (459)
                      +++++.++... ...-......+.++.+++++  +.-    +..+|..+    ..+++|++|++++ +.++.+| . +..
T Consensus       228 ~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~--~~l~~~~l~~l~~~l----~~l~~L~~L~Ls~-N~l~~i~~~~~~~  299 (353)
T 2z80_A          228 ELRDTDLDTFH-FSELSTGETNSLIKKFTFRN--VKITDESLFQVMKLL----NQISGLLELEFSR-NQLKSVPDGIFDR  299 (353)
T ss_dssp             EEESCBCTTCC-CC------CCCCCCEEEEES--CBCCHHHHHHHHHHH----HTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred             ECCCCcccccc-ccccccccccchhhcccccc--ccccCcchhhhHHHH----hcccCCCEEECCC-CCCCccCHHHHhc
Confidence            99998876432 11000123466788999988  321    22344433    2678999999999 7899999 5 589


Q ss_pred             CCCCCEEeccCCC
Q 039619          307 LTSFESLQLCCCP  319 (459)
Q Consensus       307 l~~L~~L~l~~c~  319 (459)
                      +++|++|++++++
T Consensus       300 l~~L~~L~L~~N~  312 (353)
T 2z80_A          300 LTSLQKIWLHTNP  312 (353)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEEeeCCC
Confidence            9999999999975

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.63  E-value=1.4e-16  Score=153.33  Aligned_cols=232  Identities=13%  Similarity=0.111  Sum_probs=148.4

Q ss_pred             CcCceEEeCCCCCCCCCccc------eeEEEEecCCCCc--cccCCcc-------ccccCcEEEeecCCCceeeccc---
Q 039619           90 TLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLT--SLWSKSE-------LPATLENIYVDRCSKLAFLSLR---  151 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~--~lp~~~~-------~~~~L~~L~l~~c~~l~~l~~~---  151 (459)
                      +|++|+++++    .+ .+|      |++|++++ ..++  .+|....       .+++|++|+++++.--..+|..   
T Consensus        44 ~L~~l~l~~n----~l-~~p~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           44 SLEYLLKRVD----TE-ADLGQFTDIIKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             ECTTHHHHCC----TT-CCCHHHHHHHHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CceeEeeccc----cc-ccHHHHHHHHhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            5777777774    33 555      66666655 2332  2332222       2458888888886433355532   


Q ss_pred             cccccccceEEeecccCCccccccCCCC-----CcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCcc--cc-C
Q 039619          152 GNLSKALKHLYIISCSNLESIAEGLDDN-----TSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGS--FT-A  222 (459)
Q Consensus       152 ~~lp~~L~~L~l~~c~~l~~lp~~l~~l-----~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~--lp-~  222 (459)
                      ..+ ++|++|+++++ .+..+|..+..+     ++|++|+++++. +..++ ..+..+++|++|+++++.....  ++ .
T Consensus       118 ~~l-~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          118 ATG-PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             CCS-CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             hcC-CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            566 88888888885 455556655555     888888888874 44444 6778888888888888654332  11 2


Q ss_pred             C--CCCCCccEEEEecCcccccc-cccCCCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCC
Q 039619          223 N--CFPTNLASVCIDYEKIYKPL-ILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNL  298 (459)
Q Consensus       223 ~--~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l  298 (459)
                      .  ..+++|++|+++++.++... .+.  +.+..+++|++|++++   +.+...+ ...   ...+++|++|++++ +.+
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~---N~l~~~~~~~~---~~~l~~L~~L~Ls~-N~l  265 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSH---NSLRDAAGAPS---CDWPSQLNSLNLSF-TGL  265 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTT---SCCCSSCCCSC---CCCCTTCCEEECTT-SCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCC---CcCCcccchhh---hhhcCCCCEEECCC-Ccc
Confidence            2  34678888888887776311 011  0234678888888888   3454433 111   01467888888888 678


Q ss_pred             CccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          299 ERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       299 ~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      +.+| .+.  ++|++|+++++ +++.+|...-+++|++|++++++
T Consensus       266 ~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          266 KQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred             Chhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence            8888 554  78888888884 67777763336788888887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=1.9e-14  Score=140.80  Aligned_cols=233  Identities=17%  Similarity=0.157  Sum_probs=174.8

Q ss_pred             EEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccccc-cCCCCCcccEEeec
Q 039619          112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIF  188 (459)
Q Consensus       112 ~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~  188 (459)
                      +++.++ ..++++|..  +++++++|++++ +.++.+|.  ...+ ++|++|+++++..++.+|. .+.++++|+++.+.
T Consensus        13 ~v~C~~-~~Lt~iP~~--l~~~l~~L~Ls~-N~i~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           13 VFLCQE-SKVTEIPSD--LPRNAIELRFVL-TKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEEEES-TTCCSCCTT--CCTTCSEEEEES-CCCSEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EEEecC-CCCCccCcC--cCCCCCEEEccC-CcCCCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            344444 578888843  467999999999 58999984  4678 9999999999876677764 46788999887777


Q ss_pred             cccCcccCc-ccCCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEec-CcccccccccCCCCCCCCC-ccCEEEEe
Q 039619          189 ICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDY-EKIYKPLILERGPGLHRFT-SVRLLTLF  263 (459)
Q Consensus       189 ~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~-~~l~~~~~~~~~~~l~~l~-~L~~L~l~  263 (459)
                      +++.+..++ ..+..+++|++|+++++ .+..++...+  ..++..|++.+ +.+.... ..   .+..+. .++.|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~---~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RN---SFVGLSFESVILWLN  162 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TT---SSTTSBSSCEEEECC
T ss_pred             cCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc-cc---chhhcchhhhhhccc
Confidence            777888775 56789999999999885 5667766533  45677888877 5665332 22   445554 68899999


Q ss_pred             CCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619          264 GGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC  341 (459)
Q Consensus       264 ~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c  341 (459)
                      +   +.++.++...    ....+|++|.+.+++.++.+|  .+..+++|++|+++++ +++.+|..+ +.+|+.|.+.++
T Consensus       163 ~---N~i~~i~~~~----f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~-~~~L~~L~~l~~  233 (350)
T 4ay9_X          163 K---NGIQEIHNSA----FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG-LENLKKLRARST  233 (350)
T ss_dssp             S---SCCCEECTTS----STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS-CTTCCEEECTTC
T ss_pred             c---ccccCCChhh----ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh-hccchHhhhccC
Confidence            8   6888888765    255789999999889999999  5789999999999995 799999754 589999999998


Q ss_pred             chhHHhhhcCcCCccccccCCCeEEeCc
Q 039619          342 PLIEERFEKDKGQYWSLIADIPCVRIDC  369 (459)
Q Consensus       342 ~~L~~~~~~~~~~~~~~i~~i~~l~~~~  369 (459)
                      ..++...      ....+.++..+.+.+
T Consensus       234 ~~l~~lP------~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          234 YNLKKLP------TLEKLVALMEASLTY  255 (350)
T ss_dssp             TTCCCCC------CTTTCCSCCEEECSC
T ss_pred             CCcCcCC------CchhCcChhhCcCCC
Confidence            8776542      123344555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.62  E-value=2.5e-15  Score=144.96  Aligned_cols=227  Identities=15%  Similarity=0.114  Sum_probs=133.8

Q ss_pred             CCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccc
Q 039619           89 VTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALK  159 (459)
Q Consensus        89 ~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~  159 (459)
                      ++|++|+++++    .+..++         |++|++++ +.++.+++ ...+++|++|+++++ .++.++   .. ++|+
T Consensus        34 ~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~---~~-~~L~  102 (317)
T 3o53_A           34 WNVKELDLSGN----PLSQISAADLAPFTKLELLNLSS-NVLYETLD-LESLSTLRTLDLNNN-YVQELL---VG-PSIE  102 (317)
T ss_dssp             GGCSEEECTTS----CCCCCCHHHHTTCTTCCEEECTT-SCCEEEEE-ETTCTTCCEEECCSS-EEEEEE---EC-TTCC
T ss_pred             CCCCEEECcCC----ccCcCCHHHhhCCCcCCEEECCC-CcCCcchh-hhhcCCCCEEECcCC-cccccc---CC-CCcC
Confidence            36777777764    333322         77777766 34554443 444457778877774 566665   23 6777


Q ss_pred             eEEeecccCCccccccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCC---CCCCCccEEEEe
Q 039619          160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCID  235 (459)
Q Consensus       160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~  235 (459)
                      +|+++++ .+..++..  .+++|++|+++++ .+..+ +..+..+++|++|+++++. +..++..   ..+++|++|+++
T Consensus       103 ~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          103 TLHAANN-NISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             EEECCSS-CCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECT
T ss_pred             EEECCCC-ccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECC
Confidence            7777774 45555432  2567777777776 34444 3356667777777777653 4443322   125677777777


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEe
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQ  314 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~  314 (459)
                      ++.++...      ....+++|++|++++   +.+..+|..+    ..+++|++|++++ +.++.+| .+..+++|+.|+
T Consensus       178 ~N~l~~~~------~~~~l~~L~~L~Ls~---N~l~~l~~~~----~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          178 YNFIYDVK------GQVVFAKLKTLDLSS---NKLAFMGPEF----QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFD  243 (317)
T ss_dssp             TSCCCEEE------CCCCCTTCCEEECCS---SCCCEECGGG----GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEE
T ss_pred             CCcCcccc------cccccccCCEEECCC---CcCCcchhhh----cccCcccEEECcC-CcccchhhHhhcCCCCCEEE
Confidence            76665433      334567777777776   3555665544    2566777777777 5677777 666777777777


Q ss_pred             ccCCCCC-CcCCCC-CCCCCcceEEeeCCchhH
Q 039619          315 LCCCPKL-QKFPDN-GLPTSLLRLEIYGCPLIE  345 (459)
Q Consensus       315 l~~c~~l-~~lp~~-~l~~sL~~L~i~~c~~L~  345 (459)
                      +++++-. ..++.. .-.++|+.|++.+++.++
T Consensus       244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            7775432 122210 013455555555554444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.61  E-value=4.7e-15  Score=142.44  Aligned_cols=166  Identities=18%  Similarity=0.213  Sum_probs=79.4

Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID  235 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~  235 (459)
                      ++|++|++++| .+..++. +..+++|++|+++++ .+..++ .+..+++|++|++++| .++.++....+++|++|+++
T Consensus        63 ~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~  137 (308)
T 1h6u_A           63 NNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLD  137 (308)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECC
Confidence            44444444443 3333333 444444444444444 233332 3444444555555443 23333333334455555555


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEec
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQL  315 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l  315 (459)
                      ++.+....      .+..+++|+.|++++   +.+..++. .    ..+++|+.|++++ +.++.++.+..+++|++|++
T Consensus       138 ~n~l~~~~------~l~~l~~L~~L~l~~---n~l~~~~~-l----~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L  202 (308)
T 1h6u_A          138 LNQITNIS------PLAGLTNLQYLSIGN---AQVSDLTP-L----ANLSKLTTLKADD-NKISDISPLASLPNLIEVHL  202 (308)
T ss_dssp             SSCCCCCG------GGGGCTTCCEEECCS---SCCCCCGG-G----TTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEEC
T ss_pred             CCccCcCc------cccCCCCccEEEccC---CcCCCChh-h----cCCCCCCEEECCC-CccCcChhhcCCCCCCEEEc
Confidence            54444322      234555666666655   23443333 1    1445666666665 45555554455666666666


Q ss_pred             cCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          316 CCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       316 ~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      ++| .+..++...-+++|+.|++++++
T Consensus       203 ~~N-~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          203 KNN-QISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             cCC-ccCccccccCCCCCCEEEccCCe
Confidence            664 44444432225666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=2.8e-15  Score=144.66  Aligned_cols=209  Identities=13%  Similarity=0.093  Sum_probs=161.5

Q ss_pred             eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  188 (459)
                      |++|+++++ .++.++ .....+++|++|+++++ .+..++....+ ++|++|+++++ .++.++.    .++|++|+++
T Consensus        36 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l-~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~  107 (317)
T 3o53_A           36 VKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLESL-STLRTLDLNNN-YVQELLV----GPSIETLHAA  107 (317)
T ss_dssp             CSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTC-TTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred             CCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhc-CCCCEEECcCC-ccccccC----CCCcCEEECC
Confidence            999999884 566655 23456679999999986 55555445677 89999999986 5666653    4899999999


Q ss_pred             cccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCC-CCCCccCEEEEeCC
Q 039619          189 ICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGL-HRFTSVRLLTLFGG  265 (459)
Q Consensus       189 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l-~~l~~L~~L~l~~~  265 (459)
                      ++ .+..++..  .+++|++|+++++ .++.++..  ..+++|++|+++++.+.... +.   .+ ..+++|++|++++ 
T Consensus       108 ~n-~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~~~~~l~~L~~L~L~~-  178 (317)
T 3o53_A          108 NN-NISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FA---ELAASSDTLEHLNLQY-  178 (317)
T ss_dssp             SS-CCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GG---GGGGGTTTCCEEECTT-
T ss_pred             CC-ccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCccc-HH---HHhhccCcCCEEECCC-
Confidence            97 55555433  4789999999886 46666543  33789999999998887543 33   33 4789999999999 


Q ss_pred             cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCch
Q 039619          266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPL  343 (459)
Q Consensus       266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~  343 (459)
                        +.+..++...     .+++|++|++++ +.++.++ .+..+++|++|++++| .++.+|.. ..+++|+.|++++++-
T Consensus       179 --N~l~~~~~~~-----~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          179 --NFIYDVKGQV-----VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             --SCCCEEECCC-----CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred             --CcCccccccc-----ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence              4677776654     688999999999 7899988 8888999999999995 77888763 2368999999999864


Q ss_pred             h
Q 039619          344 I  344 (459)
Q Consensus       344 L  344 (459)
                      .
T Consensus       250 ~  250 (317)
T 3o53_A          250 H  250 (317)
T ss_dssp             B
T ss_pred             c
Confidence            4

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=4.6e-15  Score=151.65  Aligned_cols=203  Identities=16%  Similarity=0.131  Sum_probs=106.2

Q ss_pred             CCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecccccccccc
Q 039619           88 SVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKAL  158 (459)
Q Consensus        88 p~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L  158 (459)
                      +++|++|+++++    .+..++         |++|++++| .++..++ ...+++|++|+++++ .++.++.   . ++|
T Consensus        33 ~~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~---~-~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGN----PLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN-YVQELLV---G-PSI  101 (487)
T ss_dssp             GGGCCEEECCSS----CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSS-EEEEEEE---C-TTC
T ss_pred             CCCccEEEeeCC----cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCC-cCCCCCC---C-CCc
Confidence            347778887774    233222         666666653 3444442 333446666666664 4555542   2 566


Q ss_pred             ceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccc-cCC--CCCCCccEEEEe
Q 039619          159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSF-TAN--CFPTNLASVCID  235 (459)
Q Consensus       159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~--~~~~~L~~L~l~  235 (459)
                      ++|++++| .+..++..  .+++|+.|++++|.-....|..+..+++|+.|+++++. +... |..  ..+++|++|+++
T Consensus       102 ~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          102 ETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CEEECCSS-CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECT
T ss_pred             CEEECcCC-cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecC
Confidence            66666664 34444332  24566666666653222224455556666666666543 3322 221  124566666666


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEe
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQ  314 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~  314 (459)
                      +|.++...      ....+++|+.|++++   +.+..+|..+    ..+++|+.|++++ +.+..+| .+..+++|+.|+
T Consensus       178 ~N~l~~~~------~~~~l~~L~~L~Ls~---N~l~~~~~~~----~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          178 YNFIYDVK------GQVVFAKLKTLDLSS---NKLAFMGPEF----QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFD  243 (487)
T ss_dssp             TSCCCEEE------CCCCCTTCCEEECCS---SCCCEECGGG----GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEE
T ss_pred             CCcccccc------ccccCCCCCEEECCC---CCCCCCCHhH----cCCCCccEEEecC-CcCcccchhhccCCCCCEEE
Confidence            65554333      234455666666655   3444454433    2445566666665 4555555 555555666666


Q ss_pred             ccCCC
Q 039619          315 LCCCP  319 (459)
Q Consensus       315 l~~c~  319 (459)
                      +++|+
T Consensus       244 l~~N~  248 (487)
T 3oja_A          244 LRGNG  248 (487)
T ss_dssp             CTTCC
T ss_pred             cCCCC
Confidence            65543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=5e-15  Score=151.42  Aligned_cols=209  Identities=13%  Similarity=0.091  Sum_probs=139.4

Q ss_pred             eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  188 (459)
                      |++|+++++ .++.++ .....+++|++|+++++ .+..++....+ ++|++|++++| .+..+|.    .++|++|+++
T Consensus        36 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l-~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           36 VKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLESL-STLRTLDLNNN-YVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             CCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTC-TTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred             ccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccC-CCCCEEEecCC-cCCCCCC----CCCcCEEECc
Confidence            788888774 455554 23455568888888775 45444335566 78888888875 5665553    3788888888


Q ss_pred             cccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCC
Q 039619          189 ICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGG  265 (459)
Q Consensus       189 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~  265 (459)
                      +| .+..++.  ..+++|+.|++++|. +..++..  +.+++|++|++++|.+.... +.   .+. .+++|+.|++++ 
T Consensus       108 ~N-~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~l~~~l~~L~~L~Ls~-  178 (487)
T 3oja_A          108 NN-NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FA---ELAASSDTLEHLNLQY-  178 (487)
T ss_dssp             SS-CCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEE-GG---GGGGGTTTCCEEECTT-
T ss_pred             CC-cCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcC-hH---HHhhhCCcccEEecCC-
Confidence            77 4444443  246778888887754 4444322  33678888888887776544 33   343 678888888887 


Q ss_pred             cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCch
Q 039619          266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPL  343 (459)
Q Consensus       266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~  343 (459)
                        +.+..++...     .+++|+.|++++ +.++.+| .+..+++|+.|++++| .+..+|.. ..+++|+.|++++++.
T Consensus       179 --N~l~~~~~~~-----~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          179 --NFIYDVKGQV-----VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             --SCCCEEECCC-----CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             --Cccccccccc-----cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence              3566665543     577888888887 6777777 7777788888888874 56666653 2357788888887764


Q ss_pred             h
Q 039619          344 I  344 (459)
Q Consensus       344 L  344 (459)
                      .
T Consensus       250 ~  250 (487)
T 3oja_A          250 H  250 (487)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.59  E-value=6.4e-15  Score=141.52  Aligned_cols=192  Identities=16%  Similarity=0.189  Sum_probs=138.7

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |++|++++| .++.++ ....+++|++|+++++ .+..++....+ ++|++|+++++ .++.++ .+..+++|++|++++
T Consensus        43 L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l-~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNL-TKITELELSGN-PLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTC-CSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChhHccC-CCCCEEEccCC-cCCCch-hhcCCCCCCEEECCC
Confidence            556666553 455565 4445568888888875 56666655667 78888888885 466665 577788888888888


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG  269 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~  269 (459)
                      | .+..++. +..+++|++|++++| .+..++....+++|++|+++++.++...      .+..+++|+.|++++   +.
T Consensus       117 n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~---n~  184 (308)
T 1h6u_A          117 T-QITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADD---NK  184 (308)
T ss_dssp             S-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCS---SC
T ss_pred             C-CCCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCCh------hhcCCCCCCEEECCC---Cc
Confidence            7 5666654 778888888888775 4555555455788888888888777544      467889999999988   45


Q ss_pred             ceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCC
Q 039619          270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPD  326 (459)
Q Consensus       270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~  326 (459)
                      +..++.-     ..+++|++|++++ +.++.++.+..+++|+.|+++++ .+...|.
T Consensus       185 l~~~~~l-----~~l~~L~~L~L~~-N~l~~~~~l~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          185 ISDISPL-----ASLPNLIEVHLKN-NQISDVSPLANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             CCCCGGG-----GGCTTCCEEECTT-SCCCBCGGGTTCTTCCEEEEEEE-EEECCCE
T ss_pred             cCcChhh-----cCCCCCCEEEccC-CccCccccccCCCCCCEEEccCC-eeecCCe
Confidence            6666542     2678899999998 67887776778899999999985 4555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.59  E-value=1.7e-14  Score=136.16  Aligned_cols=77  Identities=22%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             cCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccCcc-cCCCCCCccE
Q 039619          133 TLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQY  208 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~  208 (459)
                      +|++|+++++ .+..++.  ...+ ++|++|+++++ .+..++ ..+..+++|++|+++++ .+..++. .+..+++|++
T Consensus        53 ~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  128 (276)
T 2z62_A           53 ELQVLDLSRC-EIQTIEDGAYQSL-SHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKE  128 (276)
T ss_dssp             TCSEEECTTC-CCCEECTTTTTTC-TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCE
T ss_pred             CCcEEECCCC-cCCccCHHHccCC-cCCCEEECCCC-ccCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCE
Confidence            4555555443 3333331  2333 44555555443 233332 33444455555555444 2222222 3444445555


Q ss_pred             Eeecc
Q 039619          209 LLIQD  213 (459)
Q Consensus       209 L~l~~  213 (459)
                      |++++
T Consensus       129 L~l~~  133 (276)
T 2z62_A          129 LNVAH  133 (276)
T ss_dssp             EECCS
T ss_pred             EECcC
Confidence            55544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=3.2e-14  Score=135.40  Aligned_cols=190  Identities=16%  Similarity=0.076  Sum_probs=116.2

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccccccCCCCCcccEEee
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEI  187 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  187 (459)
                      ++++++++ ..++.+|..  +++++++|+++++ .+..++  ....+ ++|++|+++++ .++.++.. ..+++|++|++
T Consensus        12 l~~l~~~~-~~l~~ip~~--~~~~l~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           12 HLEVNCDK-RNLTALPPD--LPKDTTILHLSEN-LLYTFSLATLMPY-TRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             CCEEECTT-SCCSSCCSC--CCTTCCEEECTTS-CCSEEEGGGGTTC-TTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred             ccEEECCC-CCCCcCCCC--CCCCCCEEEcCCC-cCCccCHHHhhcC-CCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence            34444433 344455422  2345666666653 344443  22445 56666666653 45555443 55666666666


Q ss_pred             ccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619          188 FICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG  265 (459)
Q Consensus       188 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~  265 (459)
                      +++ .+..+|..+..+++|++|+++++ .++.++..  ..+++|++|++++++++... +.   .+..+++|+.|++++ 
T Consensus        85 s~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~L~~-  157 (290)
T 1p9a_G           85 SHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLP-PG---LLTPTPKLEKLSLAN-  157 (290)
T ss_dssp             CSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TT---TTTTCTTCCEEECTT-
T ss_pred             CCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccC-hh---hcccccCCCEEECCC-
Confidence            665 45556665666666666666553 44555433  33566666666666665433 22   467788888888887 


Q ss_pred             cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619          266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP  319 (459)
Q Consensus       266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~  319 (459)
                        +.+..+|...   ...+++|+.|++++ +.++.+| .+..+++|+.|++.+++
T Consensus       158 --N~l~~l~~~~---~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          158 --NNLTELPAGL---LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             --SCCSCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             --CcCCccCHHH---hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence              4677777643   12467888999988 7888888 77778889999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.58  E-value=7.5e-14  Score=131.32  Aligned_cols=190  Identities=23%  Similarity=0.308  Sum_probs=131.9

Q ss_pred             eEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccccc-CCCCCcccEEee
Q 039619          111 YQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETMEI  187 (459)
Q Consensus       111 ~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l  187 (459)
                      +.+++++ ..++.+|.  .++++|++|+++++ .+..++.  ...+ ++|++|+++++ .++.+|.. +..+++|++|++
T Consensus        19 ~~l~~~~-~~l~~ip~--~~~~~l~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           19 NSVDCSS-KKLTAIPS--NIPADTKKLDLQSN-KLSSLPSKAFHRL-TKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TEEECTT-SCCSSCCS--CCCTTCSEEECCSS-CCSCCCTTSSSSC-TTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred             CEEEccC-CCCCccCC--CCCCCCCEEECcCC-CCCeeCHHHhcCC-CCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence            3444443 45556662  23457788887774 4666652  3556 78888888774 56666554 466888888888


Q ss_pred             ccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          188 FICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       188 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      +++ .+..+|. .+..+++|++|+++++ .++.++..  ..+++|++|+++++.+.... +.   .+..+++|++|++++
T Consensus        93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~---~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           93 TDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KG---VFDKLTSLKELRLYN  166 (270)
T ss_dssp             CSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS
T ss_pred             CCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccC-Hh---HccCCcccceeEecC
Confidence            876 4555554 4567888888888774 45555543  34778888888887776543 22   578899999999998


Q ss_pred             CcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619          265 GECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP  319 (459)
Q Consensus       265 ~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~  319 (459)
                         +.+..++...   ...+++|++|++++ +.++.++  .+..+++|+.|++++++
T Consensus       167 ---n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          167 ---NQLKRVPEGA---FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ---SCCSCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---CcCcEeChhH---hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence               4666666542   12568999999998 6888888  57889999999999865

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=4.5e-14  Score=133.24  Aligned_cols=204  Identities=17%  Similarity=0.164  Sum_probs=152.4

Q ss_pred             CCccccCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccC
Q 039619          120 SLTSLWSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKAL  196 (459)
Q Consensus       120 ~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l  196 (459)
                      .++.+|.  .++++|++|+++++ .++.++  ....+ ++|++|+++++ .+..++ ..+..+++|++|+++++. +..+
T Consensus        18 ~l~~ip~--~l~~~l~~L~ls~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~   91 (276)
T 2z62_A           18 NFYKIPD--NLPFSTKNLDLSFN-PLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSL   91 (276)
T ss_dssp             CCSSCCS--SSCTTCCEEECTTC-CCCEECTTTTTTC-TTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEE
T ss_pred             CccccCC--CCCCCccEEECCCC-cccccCHhHhccc-cCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCcc
Confidence            4556663  34568999999885 677776  34677 89999999996 566665 468889999999999984 4444


Q ss_pred             -cccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceec
Q 039619          197 -PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSF  273 (459)
Q Consensus       197 -p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l  273 (459)
                       +..+..+++|++|+++++ .+..++..  ..+++|++|+++++.+.....+.   .+..+++|++|++++   +.+..+
T Consensus        92 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~L~Ls~---N~l~~~  164 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSS---NKIQSI  164 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCS---SCCCEE
T ss_pred             ChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCEEECCC---CCCCcC
Confidence             467889999999999886 45555543  45789999999998876521133   678899999999998   456665


Q ss_pred             CCCCCCCccCCCCcc----eEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCC
Q 039619          274 PPEKDTGKALPASLK----HLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGC  341 (459)
Q Consensus       274 ~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c  341 (459)
                      +...   ...+.+|+    +|++++ +.++.++ ......+|++|++++| .++.+|...+  .++|++|+++++
T Consensus       165 ~~~~---~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          165 YCTD---LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CGGG---GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CHHH---hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence            5421   01334555    889998 7888888 5555668999999996 5888886433  689999999954

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=4.3e-14  Score=135.79  Aligned_cols=191  Identities=16%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             eeEEEEecCCCCccccCCc--cccccCcEEEeecCCCceeec-----cccccccccceEEeecccCCccc-cccCCCCCc
Q 039619          110 VYQLQIIPCPSLTSLWSKS--ELPATLENIYVDRCSKLAFLS-----LRGNLSKALKHLYIISCSNLESI-AEGLDDNTS  181 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~l~~l~-----~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~  181 (459)
                      |++|++++|......|...  ..+++|++|+++++..-...+     ....+ ++|++|+++++. +..+ +..+..+++
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~-~~L~~L~Ls~n~-l~~~~~~~~~~l~~  170 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK-PGLKVLSIAQAH-SPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC-SCCCEEEEECCS-SCCCCTTSCCCCTT
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc-cCCCEEEeeCCC-cchhhHHHhccCCC
Confidence            6666666644333334332  334566666666643221111     00134 566666666643 3333 345556666


Q ss_pred             ccEEeeccccCccc--Cc--ccCCCCCCccEEeeccCCCCccccCC-----CCCCCccEEEEecCcccccccccCCCCCC
Q 039619          182 LETMEIFICQNLKA--LP--NGLRNLTSLQYLLIQDCPTIGSFTAN-----CFPTNLASVCIDYEKIYKPLILERGPGLH  252 (459)
Q Consensus       182 L~~L~l~~c~~l~~--lp--~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~l~  252 (459)
                      |++|+++++.....  ++  ..+..+++|++|++++| .++.++..     ..+++|++|++++|.+.... |.   .+.
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~---~~~  245 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-NP---SAP  245 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-CS---CCS
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-hh---hHH
Confidence            66666666532211  21  12245566666666654 33333321     12345555555555444332 11   222


Q ss_pred             CC---CccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccC
Q 039619          253 RF---TSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCC  317 (459)
Q Consensus       253 ~l---~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~  317 (459)
                      .+   ++|++|++++   +.+..+|...      +++|++|++++ +.++.+|....+++|++|++++
T Consensus       246 ~~~~~~~L~~L~Ls~---N~l~~lp~~~------~~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          246 RCMWSSALNSLNLSF---AGLEQVPKGL------PAKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDG  303 (310)
T ss_dssp             SCCCCTTCCCEECCS---SCCCSCCSCC------CSCCSCEECCS-CCCCSCCCTTSCCCCSCEECSS
T ss_pred             hccCcCcCCEEECCC---CCCCchhhhh------cCCCCEEECCC-CcCCCCchhhhCCCccEEECcC
Confidence            22   3555555554   2344444432      24555555554 4444444334444455555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.53  E-value=2.9e-14  Score=137.10  Aligned_cols=194  Identities=17%  Similarity=0.146  Sum_probs=145.6

Q ss_pred             eeEEEEecCCCCccccCCc--cccccCcEEEeecCCCceeeccc-ccc----ccccceEEeecccCCcccc-ccCCCCCc
Q 039619          110 VYQLQIIPCPSLTSLWSKS--ELPATLENIYVDRCSKLAFLSLR-GNL----SKALKHLYIISCSNLESIA-EGLDDNTS  181 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~l~~l~~~-~~l----p~~L~~L~l~~c~~l~~lp-~~l~~l~~  181 (459)
                      |++|+++++.--..+|...  ..+++|++|+++++ .++.+|.. +.+    +++|++|+++++ .+..++ ..+..+++
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSS
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCC
Confidence            8888888854333566543  55679999999985 56655521 122    279999999996 456664 78899999


Q ss_pred             ccEEeeccccCccc--CcccC--CCCCCccEEeeccCCCCccccC---C--CCCCCccEEEEecCcccccccccCCCCCC
Q 039619          182 LETMEIFICQNLKA--LPNGL--RNLTSLQYLLIQDCPTIGSFTA---N--CFPTNLASVCIDYEKIYKPLILERGPGLH  252 (459)
Q Consensus       182 L~~L~l~~c~~l~~--lp~~l--~~l~~L~~L~l~~c~~l~~lp~---~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~  252 (459)
                      |++|+++++.....  +|..+  ..+++|++|++++| .++.++.   .  ..+++|++|++++|.+.... +.  ..+.
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~--~~~~  250 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-GA--PSCD  250 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-CC--SCCC
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-ch--hhhh
Confidence            99999999854433  33344  78999999999986 4554332   1  24689999999998887633 21  1456


Q ss_pred             CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCC
Q 039619          253 RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCP  319 (459)
Q Consensus       253 ~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~  319 (459)
                      .+++|++|++++   +.+..+|...     . ++|++|++++ +.++.+|.+..+++|++|++++++
T Consensus       251 ~l~~L~~L~Ls~---N~l~~ip~~~-----~-~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          251 WPSQLNSLNLSF---TGLKQVPKGL-----P-AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCTTCCEEECTT---SCCSSCCSSC-----C-SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             hcCCCCEEECCC---CccChhhhhc-----c-CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence            789999999999   4677888865     3 8999999999 789988878889999999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=9.9e-16  Score=148.75  Aligned_cols=231  Identities=14%  Similarity=0.161  Sum_probs=140.7

Q ss_pred             CCCcCceEEeCCCCCCCCCc-----c--c-eeEEEEecCCCCccccCCccccccCcEEEeecCCCcee--ec-ccccccc
Q 039619           88 SVTLKDPEVLDCPVCYEPLT-----I--P-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAF--LS-LRGNLSK  156 (459)
Q Consensus        88 p~~L~~L~l~~c~~l~~l~~-----l--p-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~--l~-~~~~lp~  156 (459)
                      |..++.++++++    .+..     +  + ++.|++.++ .+...+.....+++|++|++++|. +..  ++ ....+ +
T Consensus        46 ~~~~~~l~l~~~----~~~~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~-~  118 (336)
T 2ast_B           46 ESLWQTLDLTGK----NLHPDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQC-S  118 (336)
T ss_dssp             STTSSEEECTTC----BCCHHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTB-C
T ss_pred             chhheeeccccc----cCCHHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhC-C
Confidence            335677777763    2221     1  2 778888763 344433344445688888888864 432  33 23566 7


Q ss_pred             ccceEEeecccCCccccccCCCCCcccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCcc--ccCC-CCCC-Ccc
Q 039619          157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGS--FTAN-CFPT-NLA  230 (459)
Q Consensus       157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~--lp~~-~~~~-~L~  230 (459)
                      +|++|++++|..-...+..+..+++|++|++++|..++  .++..+..+++|++|++++|..++.  ++.. ..++ +|+
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            88888888875333556677778888888888886555  3555566788888888888755553  2322 2355 888


Q ss_pred             EEEEecC--cccccccccCCCCCCCCCccCEEEEeCCcCCCce-ecCCCCCCCccCCCCcceEEeecCCCCCccC--CCC
Q 039619          231 SVCIDYE--KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVV-SFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIE  305 (459)
Q Consensus       231 ~L~l~~~--~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~-~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~  305 (459)
                      +|+++++  .+++...+.   .+..+++|++|++++  |..+. ..+..+    ..+++|++|++++|..+....  .+.
T Consensus       199 ~L~l~~~~~~~~~~~l~~---~~~~~~~L~~L~l~~--~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~l~  269 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLST---LVRRCPNLVHLDLSD--SVMLKNDCFQEF----FQLNYLQHLSLSRCYDIIPETLLELG  269 (336)
T ss_dssp             EEECCSCGGGSCHHHHHH---HHHHCTTCSEEECTT--CTTCCGGGGGGG----GGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             EEEeCCCcccCCHHHHHH---HHhhCCCCCEEeCCC--CCcCCHHHHHHH----hCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence            8888875  443211022   345677888888887  55332 222222    245778888888765443322  456


Q ss_pred             CCCCCCEEeccCCCCCCcCCCCCC---CCCcceEEee
Q 039619          306 NLTSFESLQLCCCPKLQKFPDNGL---PTSLLRLEIY  339 (459)
Q Consensus       306 ~l~~L~~L~l~~c~~l~~lp~~~l---~~sL~~L~i~  339 (459)
                      .+++|++|++++|     ++..++   ..+++.|+++
T Consensus       270 ~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~  301 (336)
T 2ast_B          270 EIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN  301 (336)
T ss_dssp             GCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES
T ss_pred             cCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe
Confidence            6778888888776     343222   2346666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.50  E-value=5e-13  Score=124.23  Aligned_cols=170  Identities=19%  Similarity=0.266  Sum_probs=78.5

Q ss_pred             cCcEEEeecCCCceeeccccccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEe
Q 039619          133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLL  210 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~  210 (459)
                      +.+++++++ ..++.+|.  .+|+++++|+++++ .+..+ +..+..+++|++|+++++ .+..++ ..+..+++|++|+
T Consensus        15 ~~~~l~~~~-~~l~~~p~--~~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQG-KSLDSVPS--GIPADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTT-CCCSSCCS--CCCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCC-CCccccCC--CCCCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEE
Confidence            344555544 34444442  12355556666553 23333 234555566666666655 333332 2345556666666


Q ss_pred             eccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceE
Q 039619          211 IQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHL  290 (459)
Q Consensus       211 l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L  290 (459)
                      ++++ .++.++..                          .+..+++|++|++++   +.+..++...   ...+++|++|
T Consensus        90 L~~n-~l~~~~~~--------------------------~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L  136 (251)
T 3m19_A           90 LANN-QLASLPLG--------------------------VFDHLTQLDKLYLGG---NQLKSLPSGV---FDRLTKLKEL  136 (251)
T ss_dssp             CTTS-CCCCCCTT--------------------------TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEE
T ss_pred             CCCC-cccccChh--------------------------HhcccCCCCEEEcCC---CcCCCcChhH---hccCCcccEE
Confidence            6553 33343322                          234444555555544   2344443321   0124455555


Q ss_pred             EeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          291 SIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       291 ~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      ++++ +.++.++  .+..+++|++|+++++ .++.++...+  +++|+.|++++++
T Consensus       137 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          137 RLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            5554 3444444  3445555555555553 3444443222  3455555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=1.5e-13  Score=129.40  Aligned_cols=170  Identities=21%  Similarity=0.268  Sum_probs=84.3

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccc-cCCCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~  188 (459)
                      |+.|++.+ ..++.++ ....+++|++|+++++ .+..++....+ ++|++|++++| .++.++. .+..+++|++|+++
T Consensus        43 L~~L~l~~-~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           43 IDQIIANN-SDIKSVQ-GIQYLPNVRYLALGGN-KLHDISALKEL-TNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             CCEEECTT-SCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             eeeeeeCC-CCccccc-ccccCCCCcEEECCCC-CCCCchhhcCC-CCCCEEECCCC-ccCccChhHhcCCcCCCEEECC
Confidence            34444433 2333333 2333345556655553 34444433444 55555555553 3333332 23455555555555


Q ss_pred             cccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcC
Q 039619          189 ICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGEC  267 (459)
Q Consensus       189 ~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c  267 (459)
                      +| .+..++. .+..+++|++|++++| .++.++.                       .   .+..+++|++|++++   
T Consensus       118 ~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------------------~---~~~~l~~L~~L~l~~---  166 (272)
T 3rfs_A          118 EN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-----------------------G---VFDKLTNLTELDLSY---  166 (272)
T ss_dssp             TS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------------------T---TTTTCTTCCEEECCS---
T ss_pred             CC-cCCccCHHHhccCCCCCEEECCCC-ccCccCH-----------------------H---HhccCccCCEEECCC---
Confidence            54 2333332 2344555555555543 2333332                       1   345666666666666   


Q ss_pred             CCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619          268 CGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP  319 (459)
Q Consensus       268 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~  319 (459)
                      +.+..++...   ...+++|++|++++ +.++.++  .+..+++|++|++++++
T Consensus       167 n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          167 NQLQSLPEGV---FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCCCCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCccCHHH---hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCC
Confidence            2444444421   01456677777766 4566655  45667777777777754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=1.4e-13  Score=132.28  Aligned_cols=200  Identities=15%  Similarity=0.135  Sum_probs=142.1

Q ss_pred             ccCcEEEeecCCCceeeccc---cccccccceEEeecccCCcccc----ccCCCCCcccEEeeccccCcccCcccCCCCC
Q 039619          132 ATLENIYVDRCSKLAFLSLR---GNLSKALKHLYIISCSNLESIA----EGLDDNTSLETMEIFICQNLKALPNGLRNLT  204 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~~---~~lp~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~  204 (459)
                      ++|++|+++++.-....|..   ..+ ++|++|+++++..-...+    ..+..+++|++|++++|.-....+..+..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            47999999997544455532   567 899999999975333222    2345789999999999854344446788999


Q ss_pred             CccEEeeccCCCCcc--ccCC---CCCCCccEEEEecCcccccc-cccCCCCCCCCCccCEEEEeCCcCCCceec-CCCC
Q 039619          205 SLQYLLIQDCPTIGS--FTAN---CFPTNLASVCIDYEKIYKPL-ILERGPGLHRFTSVRLLTLFGGECCGVVSF-PPEK  277 (459)
Q Consensus       205 ~L~~L~l~~c~~l~~--lp~~---~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l-~~~~  277 (459)
                      +|++|+++++.....  ++..   +.+++|++|++++++++... .+.  +.+..+++|++|++++   +.+..+ |..+
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~l~~~l~~L~~L~Ls~---N~l~~~~p~~~  244 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA--ALAAAGVQPHSLDLSH---NSLRATVNPSA  244 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH--HHHHHTCCCSSEECTT---SCCCCCCCSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH--HHHhcCCCCCEEECCC---CCCCccchhhH
Confidence            999999999764321  2221   34789999999998886322 000  0135789999999998   455554 5544


Q ss_pred             CCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          278 DTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       278 ~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      . ....+++|++|++++ +.++.+| .+.  ++|++|++++| +++.+|....+++|+.|++++++
T Consensus       245 ~-~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          245 P-RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             S-SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred             H-hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence            2 001237999999998 7899998 554  89999999985 67777653446899999998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=1.2e-15  Score=159.78  Aligned_cols=339  Identities=15%  Similarity=0.061  Sum_probs=174.1

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCC-----CCCCCcccCCC----------CCCCCCCC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGG-----GSKGNKTADPG----------KRSNNGPV   87 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~----------~~~~~~~l   87 (459)
                      .+++|++|++.++.............+|+|++|.+.+|..+.....     ....++.++..          +.......
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            4778888888776432111111111467777777777743321000     01111111111          11111112


Q ss_pred             CCCcCceEEeCCCCCCCCC-----c----cc-eeEEEEecCCCCccccCCccccccCcEEEeec----------------
Q 039619           88 SVTLKDPEVLDCPVCYEPL-----T----IP-VYQLQIIPCPSLTSLWSKSELPATLENIYVDR----------------  141 (459)
Q Consensus        88 p~~L~~L~l~~c~~l~~l~-----~----lp-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~----------------  141 (459)
                      .++|++|++++|.  ..+.     .    .| |++|++++|..++.++.....+++|++|++..                
T Consensus       183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            2367777777762  0111     1    13 77777777655555554444455777776433                


Q ss_pred             ---CCCceeec------------cccccccccceEEeecccCCcc--ccccCCCCCcccEEeeccccCcccCcccCCCCC
Q 039619          142 ---CSKLAFLS------------LRGNLSKALKHLYIISCSNLES--IAEGLDDNTSLETMEIFICQNLKALPNGLRNLT  204 (459)
Q Consensus       142 ---c~~l~~l~------------~~~~lp~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~  204 (459)
                         |.+++.+.            ....+ ++|++|++++|. +..  +...+..+++|++|++.+|..-..++.....++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVC-SRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHH-TTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhh-CCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC
Confidence               23333331            00134 678888887775 432  222345677888888877722112222223467


Q ss_pred             CccEEeecc--------CCCCccccCC---CCCCCccEEEEecCcccccccccCCCCC-CCCCccCEEEEe-----CCcC
Q 039619          205 SLQYLLIQD--------CPTIGSFTAN---CFPTNLASVCIDYEKIYKPLILERGPGL-HRFTSVRLLTLF-----GGEC  267 (459)
Q Consensus       205 ~L~~L~l~~--------c~~l~~lp~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~l-~~l~~L~~L~l~-----~~~c  267 (459)
                      +|++|++.+        |..+......   ..+++|++|.+..+.++... ..   .+ ..+++|++|+++     +  |
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~-~~---~l~~~~~~L~~L~L~~~~~~~--~  412 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA-LI---TIARNRPNMTRFRLCIIEPKA--P  412 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH-HH---HHHHHCTTCCEEEEEESSTTC--C
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH-HH---HHHhhCCCcceeEeecccCCC--c
Confidence            788888843        3333221100   12578888876666665432 11   22 257888899888     4  5


Q ss_pred             CCceecCCCCC--CCccCCCCcceEEeecCCCCCccC--CCC-CCCCCCEEeccCCCCCCcCCCC---CCCCCcceEEee
Q 039619          268 CGVVSFPPEKD--TGKALPASLKHLSIWNFPNLERIS--SIE-NLTSFESLQLCCCPKLQKFPDN---GLPTSLLRLEIY  339 (459)
Q Consensus       268 ~~l~~l~~~~~--~~~~~~~~L~~L~l~~c~~l~~l~--~l~-~l~~L~~L~l~~c~~l~~lp~~---~l~~sL~~L~i~  339 (459)
                      +.+...|...+  .....+++|++|++++  .++...  .+. .+++|++|++++|. ++.....   .-+++|++|+++
T Consensus       413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~  489 (594)
T 2p1m_B          413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIR  489 (594)
T ss_dssp             CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECc
Confidence            66664432100  0001346788888865  444322  222 36788888888875 3221110   115789999999


Q ss_pred             CCchhHHhhhcCcCCccccccCCCeEEeCceeeeCHHHHh
Q 039619          340 GCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQR  379 (459)
Q Consensus       340 ~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~~~~~~  379 (459)
                      +|+.-......    -.....++..+.+.+|.. .....+
T Consensus       490 ~n~~~~~~~~~----~~~~l~~L~~L~l~~~~~-~~~~~~  524 (594)
T 2p1m_B          490 DCPFGDKALLA----NASKLETMRSLWMSSCSV-SFGACK  524 (594)
T ss_dssp             SCSCCHHHHHH----TGGGGGGSSEEEEESSCC-BHHHHH
T ss_pred             CCCCcHHHHHH----HHHhCCCCCEEeeeCCCC-CHHHHH
Confidence            88752221111    112345777888888866 444333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.48  E-value=9.1e-13  Score=124.05  Aligned_cols=172  Identities=19%  Similarity=0.274  Sum_probs=118.9

Q ss_pred             ccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCcc
Q 039619          153 NLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLA  230 (459)
Q Consensus       153 ~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~  230 (459)
                      .+ ++|+.|++.++ .++.++ .+..+++|++|+++++ .+..++ .+..+++|++|++++| .++.++..  ..+++|+
T Consensus        39 ~l-~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           39 EL-NSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HH-TTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred             cc-cceeeeeeCCC-Cccccc-ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence            44 66666666664 344443 3556677777777665 344443 4566677777777665 34455442  3366777


Q ss_pred             EEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCC
Q 039619          231 SVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLT  308 (459)
Q Consensus       231 ~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~  308 (459)
                      +|+++++.++... +.   .+..+++|++|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..++
T Consensus       113 ~L~L~~n~l~~~~-~~---~~~~l~~L~~L~L~~---n~l~~~~~~~---~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~  181 (272)
T 3rfs_A          113 ELVLVENQLQSLP-DG---VFDKLTNLTYLNLAH---NQLQSLPKGV---FDKLTNLTELDLSY-NQLQSLPEGVFDKLT  181 (272)
T ss_dssp             EEECTTSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred             EEECCCCcCCccC-HH---HhccCCCCCEEECCC---CccCccCHHH---hccCccCCEEECCC-CCcCccCHHHhcCCc
Confidence            7777776665433 32   578899999999998   3677776643   12678999999999 6888888  578999


Q ss_pred             CCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          309 SFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       309 ~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      +|++|++++| .++.++...+  +++|+.|++++++
T Consensus       182 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          182 QLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence            9999999996 5777776433  7899999999865

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=9.8e-13  Score=122.27  Aligned_cols=171  Identities=18%  Similarity=0.254  Sum_probs=114.5

Q ss_pred             ccceEEeecccCCccccccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619          157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID  235 (459)
Q Consensus       157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~  235 (459)
                      +.+++++++ ..++.+|..+.  ++|+.|+++++. +..+ +..+..+++|++|+++++ .++.++              
T Consensus        15 ~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--------------   75 (251)
T 3m19_A           15 GKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLS--------------   75 (251)
T ss_dssp             GGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCC--------------
T ss_pred             CCeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccC--------------
Confidence            455666655 35666665553  466667666653 3333 234556666666666553 233332              


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEE
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESL  313 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L  313 (459)
                               +.   .+..+++|++|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..+++|++|
T Consensus        76 ---------~~---~~~~l~~L~~L~L~~---n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           76 ---------AG---VFDDLTELGTLGLAN---NQLASLPLGV---FDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             ---------TT---TTTTCTTCCEEECTT---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             ---------Hh---HhccCCcCCEEECCC---CcccccChhH---hcccCCCCEEEcCC-CcCCCcChhHhccCCcccEE
Confidence                     22   568899999999998   4677776542   12678999999999 7899988  46889999999


Q ss_pred             eccCCCCCCcCCCCCC--CCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619          314 QLCCCPKLQKFPDNGL--PTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY  371 (459)
Q Consensus       314 ~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~  371 (459)
                      +++++ .++.++...+  +++|++|+++++.. ...    ....+..+.++..+.+.++.
T Consensus       137 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~----~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          137 RLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL-QSV----PHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-SCC----CTTTTTTCTTCCEEECCSCC
T ss_pred             ECcCC-cCCccCHHHcCcCcCCCEEECCCCcC-Ccc----CHHHHhCCCCCCEEEeeCCc
Confidence            99995 7888886433  68999999999842 211    11234456677888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.47  E-value=1.7e-13  Score=130.44  Aligned_cols=120  Identities=19%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619          132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI  211 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  211 (459)
                      ++|++|+++++ .+..++....+ ++|++|+++++ .+..++. +..+++|++|+++++ .+..++ .+..+++|++|++
T Consensus        46 ~~L~~L~l~~~-~i~~~~~~~~l-~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKSVQGIQYL-PNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTS-CCCCCTTGGGC-TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCC-CcccChhHhcC-CCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEEC
Confidence            35566666553 44444433444 55555555553 3444443 555555555555554 344433 2455555555555


Q ss_pred             ccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          212 QDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       212 ~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      ++| .+..++....+++|++|+++++.++...      .+..+++|+.|++++
T Consensus       120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~L~~  165 (291)
T 1h6t_A          120 EHN-GISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLED  165 (291)
T ss_dssp             TTS-CCCCCGGGGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCS
T ss_pred             CCC-cCCCChhhcCCCCCCEEEccCCcCCcch------hhccCCCCCEEEccC
Confidence            553 2333332233444444444444443222      334444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.46  E-value=1.8e-13  Score=130.18  Aligned_cols=169  Identities=16%  Similarity=0.219  Sum_probs=102.7

Q ss_pred             cccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccE
Q 039619          152 GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLAS  231 (459)
Q Consensus       152 ~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~  231 (459)
                      ..+ ++|++|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|++|+++++ .++.++....+++|++
T Consensus        43 ~~l-~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NEL-NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKS  116 (291)
T ss_dssp             HHH-HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCE
T ss_pred             hhc-CcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCE
Confidence            345 66777777664 455553 3566677777777766 4555544 666777777777664 3555554455667777


Q ss_pred             EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCC
Q 039619          232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFE  311 (459)
Q Consensus       232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~  311 (459)
                      |+++++.+....      .+..+++|+.|++++   +.+..++. +    ..+++|+.|++++ +.++.++.+..+++|+
T Consensus       117 L~L~~n~i~~~~------~l~~l~~L~~L~l~~---n~l~~~~~-l----~~l~~L~~L~L~~-N~l~~~~~l~~l~~L~  181 (291)
T 1h6t_A          117 LSLEHNGISDIN------GLVHLPQLESLYLGN---NKITDITV-L----SRLTKLDTLSLED-NQISDIVPLAGLTKLQ  181 (291)
T ss_dssp             EECTTSCCCCCG------GGGGCTTCCEEECCS---SCCCCCGG-G----GGCTTCSEEECCS-SCCCCCGGGTTCTTCC
T ss_pred             EECCCCcCCCCh------hhcCCCCCCEEEccC---CcCCcchh-h----ccCCCCCEEEccC-CccccchhhcCCCccC
Confidence            777776665433      456667777777776   34444432 2    2556677777776 4566555455667777


Q ss_pred             EEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       312 ~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      +|++++| .++.++...-+++|+.|++++++
T Consensus       182 ~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          182 NLYLSKN-HISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             EEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence            7777664 55555542235677777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.46  E-value=5e-12  Score=132.90  Aligned_cols=232  Identities=15%  Similarity=0.142  Sum_probs=162.6

Q ss_pred             CCcCceEEeCCCCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec----ccccccccc
Q 039619           89 VTLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS----LRGNLSKAL  158 (459)
Q Consensus        89 ~~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~----~~~~lp~~L  158 (459)
                      .+|+.|++.++    .+..++      |+.+++..+ .....+.. ..+++|+.|++++. .+....    ....+ .+|
T Consensus       328 ~~L~~L~l~~~----~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~-~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~-~~L  399 (635)
T 4g8a_A          328 FGWQHLELVNC----KFGQFPTLKLKSLKRLTFTSN-KGGNAFSE-VDLPSLEFLDLSRN-GLSFKGCCSQSDFGT-ISL  399 (635)
T ss_dssp             CCCSEEEEESC----EESSCCCCBCTTCCEEEEESC-CSCCBCCC-CBCTTCCEEECCSS-CCBEEEECCHHHHSC-SCC
T ss_pred             hhhhhhhcccc----cccCcCcccchhhhhcccccc-cCCCCccc-ccccccccchhhcc-ccccccccccchhhh-hhh
Confidence            47888888875    233332      888888764 33344423 33458999998874 333322    11344 788


Q ss_pred             ceEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEe
Q 039619          159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCID  235 (459)
Q Consensus       159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~  235 (459)
                      +.|++..+ ....++..+..+++|+.+++.++......+ ..+..+++++.++++.+. +...+..  ..+++|+.|+++
T Consensus       400 ~~L~~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls  477 (635)
T 4g8a_A          400 KYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMA  477 (635)
T ss_dssp             CEEECCSC-SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECT
T ss_pred             hhhhcccc-ccccccccccccccccchhhhhccccccccccccccccccccccccccc-cccccccccccchhhhhhhhh
Confidence            89988875 445566678889999999998875554433 345688899999998754 4444333  457899999999


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCE
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFES  312 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~  312 (459)
                      ++.+.....+.   .+..+++|++|++++   +.+..++ ..+    ..+++|++|++++ ++++.++  .+..+++|++
T Consensus       478 ~N~~~~~~~~~---~~~~l~~L~~L~Ls~---N~L~~l~~~~f----~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          478 GNSFQENFLPD---IFTELRNLTFLDLSQ---CQLEQLSPTAF----NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             TCEEGGGEECS---CCTTCTTCCEEECTT---SCCCEECTTTT----TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCE
T ss_pred             hcccccccCch---hhhhccccCEEECCC---CccCCcChHHH----cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCE
Confidence            86543322144   678999999999998   3666664 444    3678999999999 7898887  6888999999


Q ss_pred             EeccCCCCCCcCCCCC---CCCCcceEEeeCCc
Q 039619          313 LQLCCCPKLQKFPDNG---LPTSLLRLEIYGCP  342 (459)
Q Consensus       313 L~l~~c~~l~~lp~~~---l~~sL~~L~i~~c~  342 (459)
                      |+++++ +++.++...   ++++|+.|+++++|
T Consensus       547 L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          547 LDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             EECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             EECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            999984 677776543   35789999998865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.45  E-value=2.4e-14  Score=149.83  Aligned_cols=234  Identities=12%  Similarity=0.053  Sum_probs=126.4

Q ss_pred             cccccCcEEEeecCCCceeec-cccccccccceEEeecccCCcc--ccccCCCCCcccEEeeccccCcccCcccCCCCCC
Q 039619          129 ELPATLENIYVDRCSKLAFLS-LRGNLSKALKHLYIISCSNLES--IAEGLDDNTSLETMEIFICQNLKALPNGLRNLTS  205 (459)
Q Consensus       129 ~~~~~L~~L~l~~c~~l~~l~-~~~~lp~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  205 (459)
                      ..+++|+.|+++++ ....+| ....+ ++|++|++++|. +..  ++..+..+++|++|++.++-.-..++.....+++
T Consensus       267 ~~~~~L~~L~l~~~-~~~~l~~~~~~~-~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          267 VFPRKLCRLGLSYM-GPNEMPILFPFA-AQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCTTCCEEEETTC-CTTTGGGGGGGG-GGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             hccccccccCcccc-chhHHHHHHhhc-CCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            34456666666553 222233 22345 678888888775 332  2233566778888888744222233333345677


Q ss_pred             ccEEeecc----------CCCCccccCC---CCCCCccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCCc-CCCc
Q 039619          206 LQYLLIQD----------CPTIGSFTAN---CFPTNLASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGGE-CCGV  270 (459)
Q Consensus       206 L~~L~l~~----------c~~l~~lp~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~-c~~l  270 (459)
                      |++|++++          |+.++.....   ..+++|++|+++.+.+++.. ..   .+. .+++|++|+++++. |+.+
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-~~---~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-LE---SIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH-HH---HHHHHCCSCCEEEEEECSCCSCC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH-HH---HHHhhCCCCcEEEEeecCCCccc
Confidence            88888874          6665432111   23678888888666665433 22   233 37788888887310 3455


Q ss_pred             eecCCCCC--CCccCCCCcceEEeecCCC-CCccC--C-CCCCCCCCEEeccCCCCCCc--CCC-CCCCCCcceEEeeCC
Q 039619          271 VSFPPEKD--TGKALPASLKHLSIWNFPN-LERIS--S-IENLTSFESLQLCCCPKLQK--FPD-NGLPTSLLRLEIYGC  341 (459)
Q Consensus       271 ~~l~~~~~--~~~~~~~~L~~L~l~~c~~-l~~l~--~-l~~l~~L~~L~l~~c~~l~~--lp~-~~l~~sL~~L~i~~c  341 (459)
                      ...|...+  .....+++|++|++++|.+ +....  . ...+++|++|++++|. +..  ++. ..-+++|++|++++|
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCC
Confidence            54332100  0001357888888877654 22211  1 2346788888888764 432  111 012478888888888


Q ss_pred             chhHHhhhcCcCCccccccCCCeEEeCceeeeCH
Q 039619          342 PLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDP  375 (459)
Q Consensus       342 ~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~~  375 (459)
                      + +.......   -.....++..+.+.+|. +..
T Consensus       499 ~-l~~~~~~~---~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          499 C-FSERAIAA---AVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             C-CBHHHHHH---HHHHCSSCCEEEEESCB-CCT
T ss_pred             C-CcHHHHHH---HHHhcCccCeeECcCCc-CCH
Confidence            7 33221110   11234567778887776 443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=8.1e-13  Score=136.79  Aligned_cols=173  Identities=19%  Similarity=0.201  Sum_probs=107.0

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |+.|++++ +.++.+|...  +++|++|+++++ .++.+|  ..+ ++|++|+++++ .++.+|. +..  +|++|++++
T Consensus        61 L~~L~Ls~-n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l-~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           61 FSELQLNR-LNLSSLPDNL--PPQITVLEITQN-ALISLP--ELP-ASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             CSEEECCS-SCCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCC-TTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             ccEEEeCC-CCCCccCHhH--cCCCCEEECcCC-CCcccc--ccc-CCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            45555555 3455566332  357777877774 566676  344 77777777774 5666766 543  777777777


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG  269 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~  269 (459)
                      + .++.+|.   .+++|+.|+++++ .++.+|.  .+++|++|++++|.++...      .+.  ++|+.|++++   +.
T Consensus       130 N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp------~l~--~~L~~L~Ls~---N~  191 (571)
T 3cvr_A          130 N-QLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLP------ELP--ESLEALDVST---NL  191 (571)
T ss_dssp             S-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCC------CCC--TTCCEEECCS---SC
T ss_pred             C-cCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcc------hhh--CCCCEEECcC---CC
Confidence            6 5555665   5677777777664 4555654  4567777777776665422      222  6777777776   35


Q ss_pred             ceecCCCCCCCccCCCCc-------ceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619          270 VVSFPPEKDTGKALPASL-------KHLSIWNFPNLERIS-SIENLTSFESLQLCCCP  319 (459)
Q Consensus       270 l~~l~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~  319 (459)
                      +..+|. +     . .+|       +.|++++ |.++.+| .+..+++|+.|++++|+
T Consensus       192 L~~lp~-~-----~-~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          192 LESLPA-V-----P-VRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CSSCCC-C-----C---------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCchhh-H-----H-HhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence            556665 3     1 255       7777776 5666666 55566677777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.44  E-value=5.9e-13  Score=119.00  Aligned_cols=145  Identities=14%  Similarity=0.170  Sum_probs=97.0

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |++|++++ ..++.+| ....+++|++|++++| .+..++....+ ++|++|+++++..-...+..+..+++|++|++++
T Consensus        46 L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           46 LTYITLAN-INVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             CCEEEEES-SCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTC-TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             ccEEeccC-CCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcC-CCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            66666665 3555666 4555568888888886 66666655667 8888888888543333567788888888888888


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      |.-....|..+..+++|++|++++|..++.++....+++|++|+++++.+++..      .+..+++|++|++++
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECB
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeC
Confidence            744434566677888888888888765666654344566666666665555432      345566666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.41  E-value=5e-13  Score=139.66  Aligned_cols=140  Identities=19%  Similarity=0.255  Sum_probs=72.1

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |+.|++++ ..+..++ .+..+++|+.|+|++| .+..++....+ ++|+.|++++| .+..+| .+..+++|+.|++++
T Consensus        45 L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l-~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           45 IDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNL-KNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             CCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGC-TTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChhhccC-CCCCEEECcCC-CCCCCh-hhccCCCCCEEEecC
Confidence            56666654 3455555 3444456666666653 34444434445 56666666654 344443 455566666666665


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      | .+..++ .+..+++|+.|++++| .+..++....+++|+.|+++++.+....      .+..+++|+.|++++
T Consensus       119 N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          119 N-GISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSK  184 (605)
T ss_dssp             S-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCG------GGTTCTTCCEEECCS
T ss_pred             C-CCCCCc-cccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCch------hhccCCCCCEEECcC
Confidence            5 344442 3455566666666554 2334433334455555555555554333      234555555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.40  E-value=8.1e-13  Score=118.10  Aligned_cols=145  Identities=16%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCcc-ccC-CCCCCCccEEE
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGS-FTA-NCFPTNLASVC  233 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~-~~~~~~L~~L~  233 (459)
                      ++|++|+++++ .+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|. +.. .+. ...+++|++|+
T Consensus        44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEE
Confidence            55555555553 344444 4555555666666555 333332 44455555555555532 222 111 12344455555


Q ss_pred             EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEE
Q 039619          234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESL  313 (459)
Q Consensus       234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L  313 (459)
                      ++++.+.... +.   .+..+++|++|++++  |..+..++. +    ..+++|++|++++ +.++.++.+..+++|++|
T Consensus       119 Ls~n~i~~~~-~~---~l~~l~~L~~L~L~~--n~~i~~~~~-l----~~l~~L~~L~l~~-n~i~~~~~l~~l~~L~~L  186 (197)
T 4ezg_A          119 ISHSAHDDSI-LT---KINTLPKVNSIDLSY--NGAITDIMP-L----KTLPELKSLNIQF-DGVHDYRGIEDFPKLNQL  186 (197)
T ss_dssp             CCSSBCBGGG-HH---HHTTCSSCCEEECCS--CTBCCCCGG-G----GGCSSCCEEECTT-BCCCCCTTGGGCSSCCEE
T ss_pred             ecCCccCcHh-HH---HHhhCCCCCEEEccC--CCCccccHh-h----cCCCCCCEEECCC-CCCcChHHhccCCCCCEE
Confidence            5444444322 22   345556666666665  333444432 1    1344555555555 344444444444555555


Q ss_pred             eccC
Q 039619          314 QLCC  317 (459)
Q Consensus       314 ~l~~  317 (459)
                      ++++
T Consensus       187 ~l~~  190 (197)
T 4ezg_A          187 YAFS  190 (197)
T ss_dssp             EECB
T ss_pred             EeeC
Confidence            5544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.40  E-value=1.9e-14  Score=139.66  Aligned_cols=218  Identities=13%  Similarity=0.108  Sum_probs=152.4

Q ss_pred             eeEEEEecCCCCccccCCcccc--ccCcEEEeecCCCceee-ccccccccccceEEeecccCCcc-ccccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWSKSELP--ATLENIYVDRCSKLAFL-SLRGNLSKALKHLYIISCSNLES-IAEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~lp~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L  185 (459)
                      ++.++++++ .+.  +......  ++++.|++.++. +... +....+ ++|++|++++|..-.. ++..+..+++|++|
T Consensus        49 ~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccc-cCC--HHHHHhhhhccceEEEcCCcc-ccccchhhccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            788888764 332  2122222  689999998853 4333 333567 8999999999753223 67778889999999


Q ss_pred             eeccccCcccCcccCCCCCCccEEeeccCCCCcc--ccCC-CCCCCccEEEEecC-cccccccccCCCCCCCCC-ccCEE
Q 039619          186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGS--FTAN-CFPTNLASVCIDYE-KIYKPLILERGPGLHRFT-SVRLL  260 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~--lp~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~-~L~~L  260 (459)
                      ++++|......+..+..+++|++|++++|..++.  ++.. ..+++|++|+++++ .+++...+.   .+..++ +|++|
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L  200 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQL  200 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEE
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEE
Confidence            9999954445666778899999999999866653  4432 34789999999997 876431122   457788 99999


Q ss_pred             EEeCCcCC-Cc--eecCCCCCCCccCCCCcceEEeecCCCCCc-cC-CCCCCCCCCEEeccCCCCCCcCC--CCCCCCCc
Q 039619          261 TLFGGECC-GV--VSFPPEKDTGKALPASLKHLSIWNFPNLER-IS-SIENLTSFESLQLCCCPKLQKFP--DNGLPTSL  333 (459)
Q Consensus       261 ~l~~~~c~-~l--~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~-~l~~l~~L~~L~l~~c~~l~~lp--~~~l~~sL  333 (459)
                      ++++  |. .+  ..++...    ..+++|++|++++|..++. .+ .+..+++|++|++++|..+....  .-.-+++|
T Consensus       201 ~l~~--~~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          201 NLSG--YRKNLQKSDLSTLV----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  274 (336)
T ss_dssp             ECCS--CGGGSCHHHHHHHH----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             EeCC--CcccCCHHHHHHHH----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence            9999  53 23  3333322    2567999999999765653 33 77788999999999987443211  11126899


Q ss_pred             ceEEeeCC
Q 039619          334 LRLEIYGC  341 (459)
Q Consensus       334 ~~L~i~~c  341 (459)
                      ++|++++|
T Consensus       275 ~~L~l~~~  282 (336)
T 2ast_B          275 KTLQVFGI  282 (336)
T ss_dssp             CEEECTTS
T ss_pred             CEEeccCc
Confidence            99999998

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.40  E-value=6.8e-12  Score=131.87  Aligned_cols=218  Identities=14%  Similarity=0.067  Sum_probs=155.4

Q ss_pred             CCcCceEEeCCCCC--CCCCccc-eeEEEEecCCCCccc---cCCccccccCcEEEeecCCCceeeccccccccccceEE
Q 039619           89 VTLKDPEVLDCPVC--YEPLTIP-VYQLQIIPCPSLTSL---WSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLY  162 (459)
Q Consensus        89 ~~L~~L~l~~c~~l--~~l~~lp-L~~L~l~~c~~l~~l---p~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~  162 (459)
                      ..|+.+++.+....  .....+| |+.|+++++ .+...   +.......+|+.|++..+......+....+ ++|+.++
T Consensus       349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l-~~L~~l~  426 (635)
T 4g8a_A          349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL-EQLEHLD  426 (635)
T ss_dssp             TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC-TTCCEEE
T ss_pred             hhhhhcccccccCCCCcccccccccccchhhcc-ccccccccccchhhhhhhhhhhcccccccccccccccc-ccccchh
Confidence            47888888875211  1122344 899999874 44322   212233468999999876433333344566 8999999


Q ss_pred             eecccCCcccc-ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcc
Q 039619          163 IISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKI  239 (459)
Q Consensus       163 l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l  239 (459)
                      +..+......+ ..+..+++++.++++.+......+..+..+++|+.|+++++.....+...  ..+++|++|+++++++
T Consensus       427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L  506 (635)
T 4g8a_A          427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  506 (635)
T ss_dssp             CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc
Confidence            98765444333 45677899999999987544445566778999999999988655544333  4578999999999888


Q ss_pred             cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC-CCCCEEecc
Q 039619          240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL-TSFESLQLC  316 (459)
Q Consensus       240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l-~~L~~L~l~  316 (459)
                      +... +.   .+.++++|++|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..+ ++|++|+++
T Consensus       507 ~~l~-~~---~f~~l~~L~~L~Ls~---N~l~~l~~~~---~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          507 EQLS-PT---AFNSLSSLQVLNMSH---NNFFSLDTFP---YKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             CEEC-TT---TTTTCTTCCEEECTT---SCCCBCCCGG---GTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             CCcC-hH---HHcCCCCCCEEECCC---CcCCCCChhH---HhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEee
Confidence            7655 55   789999999999998   5777776542   12578999999999 7888876  67777 689999999


Q ss_pred             CCC
Q 039619          317 CCP  319 (459)
Q Consensus       317 ~c~  319 (459)
                      +++
T Consensus       576 ~Np  578 (635)
T 4g8a_A          576 QND  578 (635)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            865

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=7.3e-13  Score=138.43  Aligned_cols=182  Identities=18%  Similarity=0.226  Sum_probs=142.6

Q ss_pred             CCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCccc
Q 039619          120 SLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNG  199 (459)
Q Consensus       120 ~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~  199 (459)
                      .+..+. ....+.+|+.|+++++ .+..++....+ ++|+.|+|++| .+..++. +..+++|+.|++++| .+..+| .
T Consensus        32 ~i~~~~-~~~~L~~L~~L~l~~n-~i~~l~~l~~l-~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~  104 (605)
T 1m9s_A           32 SVTDAV-TQNELNSIDQIIANNS-DIKSVQGIQYL-PNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-S  104 (605)
T ss_dssp             CTTSEE-CHHHHTTCCCCBCTTC-CCCCCTTGGGC-TTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-T
T ss_pred             Cccccc-chhcCCCCCEEECcCC-CCCCChHHccC-CCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-h
Confidence            344444 2334569999999885 57777766778 99999999986 5677765 888999999999998 666665 6


Q ss_pred             CCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCC
Q 039619          200 LRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDT  279 (459)
Q Consensus       200 l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~  279 (459)
                      +..+++|+.|++++| .+..++....+++|+.|+++++.+....      .+..+++|+.|++++   +.+..++. +  
T Consensus       105 l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~---N~l~~~~~-l--  171 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLED---NQISDIVP-L--  171 (605)
T ss_dssp             STTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCCCG------GGGSCTTCSEEECCS---SCCCCCGG-G--
T ss_pred             hccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCccCCch------hhcccCCCCEEECcC---CcCCCchh-h--
Confidence            889999999999886 4666665566899999999998887654      678999999999998   35555544 3  


Q ss_pred             CccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCC
Q 039619          280 GKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFP  325 (459)
Q Consensus       280 ~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp  325 (459)
                        ..+++|+.|+|++ +.+..++.+..+++|+.|++++|+ +...|
T Consensus       172 --~~l~~L~~L~Ls~-N~i~~l~~l~~l~~L~~L~L~~N~-l~~~p  213 (605)
T 1m9s_A          172 --AGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFSQE-CLNKP  213 (605)
T ss_dssp             --TTCTTCCEEECCS-SCCCBCGGGTTCTTCSEEECCSEE-EECCC
T ss_pred             --ccCCCCCEEECcC-CCCCCChHHccCCCCCEEEccCCc-CcCCc
Confidence              2778999999999 688888878889999999999864 44444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=4.1e-13  Score=125.84  Aligned_cols=163  Identities=14%  Similarity=0.201  Sum_probs=99.9

Q ss_pred             cCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeec
Q 039619          133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQ  212 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  212 (459)
                      ++..+++++ ..+++++....+ ++|++|+++++ .++.++ .+..+++|++|+++++ .+..++. +..+++|++|+++
T Consensus        20 ~l~~l~l~~-~~i~~~~~~~~l-~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGK-QSVTDLVSQKEL-SGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTC-SCTTSEECHHHH-TTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHhcC-CCcccccchhhc-CcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence            455555554 345555433455 67777777775 566665 5666777777777776 5556655 6677777777777


Q ss_pred             cCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEe
Q 039619          213 DCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSI  292 (459)
Q Consensus       213 ~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l  292 (459)
                      ++ .++.++.... ++|++|+++++.++...      .+..+++|+.|++++   +.+..++. .    ..+++|+.|++
T Consensus        94 ~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~---N~i~~~~~-l----~~l~~L~~L~L  157 (263)
T 1xeu_A           94 RN-RLKNLNGIPS-ACLSRLFLDNNELRDTD------SLIHLKNLEILSIRN---NKLKSIVM-L----GFLSKLEVLDL  157 (263)
T ss_dssp             SS-CCSCCTTCCC-SSCCEEECCSSCCSBSG------GGTTCTTCCEEECTT---SCCCBCGG-G----GGCTTCCEEEC
T ss_pred             CC-ccCCcCcccc-CcccEEEccCCccCCCh------hhcCcccccEEECCC---CcCCCChH-H----ccCCCCCEEEC
Confidence            64 4555554433 66777777776665433      456677777777776   34555542 2    14566666666


Q ss_pred             ecCCCCCccCCCCCCCCCCEEeccCC
Q 039619          293 WNFPNLERISSIENLTSFESLQLCCC  318 (459)
Q Consensus       293 ~~c~~l~~l~~l~~l~~L~~L~l~~c  318 (459)
                      ++ +.++.++.+..+++|+.|+++++
T Consensus       158 ~~-N~i~~~~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          158 HG-NEITNTGGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             TT-SCCCBCTTSTTCCCCCEEEEEEE
T ss_pred             CC-CcCcchHHhccCCCCCEEeCCCC
Confidence            66 45555555555666666666653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=7e-12  Score=129.76  Aligned_cols=176  Identities=19%  Similarity=0.209  Sum_probs=141.0

Q ss_pred             ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619          132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI  211 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  211 (459)
                      .+|+.|+++++ .++.+|..  ++++|++|+++++ .++.+|   ..+++|++|++++| .++.+|. +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n-~L~~lp~~--l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSLPDN--LPPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSS-CCSCCCSC--CCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCC-CCCccCHh--HcCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEEC
Confidence            48999999985 67778743  2389999999995 677888   45799999999998 6777887 654  9999999


Q ss_pred             ccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEE
Q 039619          212 QDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLS  291 (459)
Q Consensus       212 ~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~  291 (459)
                      +++ .++.+|.  .+++|+.|++++|.++...      .  .+++|++|++++   +.+..+|. +     . ++|+.|+
T Consensus       128 s~N-~l~~lp~--~l~~L~~L~Ls~N~l~~lp------~--~l~~L~~L~Ls~---N~L~~lp~-l-----~-~~L~~L~  186 (571)
T 3cvr_A          128 DNN-QLTMLPE--LPALLEYINADNNQLTMLP------E--LPTSLEVLSVRN---NQLTFLPE-L-----P-ESLEALD  186 (571)
T ss_dssp             CSS-CCSCCCC--CCTTCCEEECCSSCCSCCC------C--CCTTCCEEECCS---SCCSCCCC-C-----C-TTCCEEE
T ss_pred             CCC-cCCCCCC--cCccccEEeCCCCccCcCC------C--cCCCcCEEECCC---CCCCCcch-h-----h-CCCCEEE
Confidence            885 5777887  7899999999999988533      2  678999999999   46777887 5     3 8999999


Q ss_pred             eecCCCCCccCCCCCCCCC-------CEEeccCCCCCCcCCCCC-CCCCcceEEeeCCch
Q 039619          292 IWNFPNLERISSIENLTSF-------ESLQLCCCPKLQKFPDNG-LPTSLLRLEIYGCPL  343 (459)
Q Consensus       292 l~~c~~l~~l~~l~~l~~L-------~~L~l~~c~~l~~lp~~~-l~~sL~~L~i~~c~~  343 (459)
                      +++ +.++.+|.+..  +|       +.|++++| .++.+|... -+++|+.|++++++.
T Consensus       187 Ls~-N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          187 VST-NLLESLPAVPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCS-SCCSSCCCCC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             CcC-CCCCchhhHHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            999 78998885322  67       99999984 788898732 278999999999963

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.37  E-value=2.8e-14  Score=149.29  Aligned_cols=218  Identities=11%  Similarity=0.052  Sum_probs=141.5

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc---ccccccccceEEeecccCCccccccCCCCCcccEEe
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL---RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETME  186 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~---~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  186 (459)
                      |+.|++.++ ....+|.....+++|++|++++|. +.....   ...+ ++|++|++.++..-..++..+..+++|++|+
T Consensus       272 L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          272 LCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKC-PNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             CCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhC-cCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence            677777653 344566555666799999999986 543322   2567 8999999985433333444445688999999


Q ss_pred             ecc----------ccCccc--CcccCCCCCCccEEeeccCCCCccccCC---CCCCCccEEEEec----Ccccccc----
Q 039619          187 IFI----------CQNLKA--LPNGLRNLTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCIDY----EKIYKPL----  243 (459)
Q Consensus       187 l~~----------c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~----~~l~~~~----  243 (459)
                      +++          |..+..  ++.....+++|++|++ +|+.++.....   ..+++|++|++++    +.+++..    
T Consensus       349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             eecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            995          766552  2222345889999999 55666442211   1267999999973    5555320    


Q ss_pred             cccCCCCCCCCCccCEEEEeCCcCCC-cee--cCCCCCCCccCCCCcceEEeecCCCCCc--cC-CCCCCCCCCEEeccC
Q 039619          244 ILERGPGLHRFTSVRLLTLFGGECCG-VVS--FPPEKDTGKALPASLKHLSIWNFPNLER--IS-SIENLTSFESLQLCC  317 (459)
Q Consensus       244 ~~~~~~~l~~l~~L~~L~l~~~~c~~-l~~--l~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~-~l~~l~~L~~L~l~~  317 (459)
                      .+.   .+.++++|++|+++.  |.+ +..  +....    ..+++|++|++++| .++.  ++ .+..+++|++|++++
T Consensus       428 ~~~---~~~~~~~L~~L~L~~--~~~~l~~~~~~~~~----~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          428 VRS---LLIGCKKLRRFAFYL--RQGGLTDLGLSYIG----QYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             HHH---HHHHCTTCCEEEEEC--CGGGCCHHHHHHHH----HSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEES
T ss_pred             HHH---HHHhCCCCCEEEEec--CCCCccHHHHHHHH----HhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccC
Confidence            011   245689999999987  553 111  11000    14678999999984 5654  33 457789999999999


Q ss_pred             CCCCCc--CCCC-CCCCCcceEEeeCCc
Q 039619          318 CPKLQK--FPDN-GLPTSLLRLEIYGCP  342 (459)
Q Consensus       318 c~~l~~--lp~~-~l~~sL~~L~i~~c~  342 (459)
                      |+ ++.  ++.. ..+++|++|++++|.
T Consensus       498 n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          498 CC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            97 542  2210 126899999999998

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.31  E-value=2.2e-12  Score=120.82  Aligned_cols=167  Identities=15%  Similarity=0.150  Sum_probs=133.0

Q ss_pred             ccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEE
Q 039619          153 NLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASV  232 (459)
Q Consensus       153 ~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L  232 (459)
                      .+ .++..+++++ ..+++++ .+..+++|++|++++| .+..++ .+..+++|++|++++| .+..++....+++|++|
T Consensus        17 ~l-~~l~~l~l~~-~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L   90 (263)
T 1xeu_A           17 GL-ANAVKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEEL   90 (263)
T ss_dssp             HH-HHHHHHHHTC-SCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEE
T ss_pred             HH-HHHHHHHhcC-CCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEE
Confidence            45 6777888877 4667776 5778899999999998 677887 6889999999999886 57777665668999999


Q ss_pred             EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCE
Q 039619          233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFES  312 (459)
Q Consensus       233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~  312 (459)
                      +++++.++...      .+.. ++|+.|++++   +.+..++. +    ..+++|+.|++++ +.++.++.+..+++|++
T Consensus        91 ~L~~N~l~~l~------~~~~-~~L~~L~L~~---N~l~~~~~-l----~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~  154 (263)
T 1xeu_A           91 SVNRNRLKNLN------GIPS-ACLSRLFLDN---NELRDTDS-L----IHLKNLEILSIRN-NKLKSIVMLGFLSKLEV  154 (263)
T ss_dssp             ECCSSCCSCCT------TCCC-SSCCEEECCS---SCCSBSGG-G----TTCTTCCEEECTT-SCCCBCGGGGGCTTCCE
T ss_pred             ECCCCccCCcC------cccc-CcccEEEccC---CccCCChh-h----cCcccccEEECCC-CcCCCChHHccCCCCCE
Confidence            99998887543      3344 8999999999   46666654 2    2778999999999 78888887788999999


Q ss_pred             EeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          313 LQLCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       313 L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      |++++| .++.++...-+++|+.|++++++
T Consensus       155 L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          155 LDLHGN-EITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             EECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence            999995 67766443336899999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.29  E-value=1.8e-14  Score=146.10  Aligned_cols=289  Identities=16%  Similarity=0.125  Sum_probs=152.8

Q ss_pred             CCCCCCeEeccCCCccCcc---cccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCC
Q 039619           23 RFPKRQRSSQQDLDESEYS---EEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDC   99 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~---~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c   99 (459)
                      .+++|++|++.++.-....   .......+++|++|.++++..- ....     ..+.    ........+|++|++++|
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~-----~~l~----~~l~~~~~~L~~L~L~~n   95 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-DVGV-----HCVL----QGLQTPSCKIQKLSLQNC   95 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-HHHH-----HHHH----HTTCSTTCCCCEEECTTS
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-hHHH-----HHHH----HHHhhCCCceeEEEccCC
Confidence            4789999999887643110   0111234688999999877521 1000     0000    000111226888888886


Q ss_pred             CCCCCCC------------ccc-eeEEEEecCCCCccccCC------ccccccCcEEEeecCCCceeec------ccccc
Q 039619          100 PVCYEPL------------TIP-VYQLQIIPCPSLTSLWSK------SELPATLENIYVDRCSKLAFLS------LRGNL  154 (459)
Q Consensus       100 ~~l~~l~------------~lp-L~~L~l~~c~~l~~lp~~------~~~~~~L~~L~l~~c~~l~~l~------~~~~l  154 (459)
                          .+.            .++ |++|+++++. ++.....      ....++|++|++++| .+....      ....+
T Consensus        96 ----~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~  169 (461)
T 1z7x_W           96 ----CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAK  169 (461)
T ss_dssp             ----CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHC
T ss_pred             ----CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhC
Confidence                233            122 8888887754 4421100      011236888888776 343321      11334


Q ss_pred             ccccceEEeecccCCccc-cccCC-----CCCcccEEeeccccCccc-----CcccCCCCCCccEEeeccCCCCcccc--
Q 039619          155 SKALKHLYIISCSNLESI-AEGLD-----DNTSLETMEIFICQNLKA-----LPNGLRNLTSLQYLLIQDCPTIGSFT--  221 (459)
Q Consensus       155 p~~L~~L~l~~c~~l~~l-p~~l~-----~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~lp--  221 (459)
                       ++|++|+++++. +... +..+.     ..++|++|++++| .+..     ++..+..+++|++|++++|. +....  
T Consensus       170 -~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~  245 (461)
T 1z7x_W          170 -PDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMA  245 (461)
T ss_dssp             -TTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH
T ss_pred             -CCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHH
Confidence             678888887754 3322 11111     2457788888777 3332     44555567778888887763 33221  


Q ss_pred             ---CC--CCCCCccEEEEecCcccccc---cccCCCCCCCCCccCEEEEeCCcCCCce-----ecCCCCCCCccCCCCcc
Q 039619          222 ---AN--CFPTNLASVCIDYEKIYKPL---ILERGPGLHRFTSVRLLTLFGGECCGVV-----SFPPEKDTGKALPASLK  288 (459)
Q Consensus       222 ---~~--~~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~L~~L~l~~~~c~~l~-----~l~~~~~~~~~~~~~L~  288 (459)
                         ..  ...++|++|+++++.++...   ++.   .+..+++|++|++++  + .+.     .+.....   ...++|+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---~l~~~~~L~~L~Ls~--n-~i~~~~~~~l~~~l~---~~~~~L~  316 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR---VLRAKESLKELSLAG--N-ELGDEGARLLCETLL---EPGCQLE  316 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH---HHHHCTTCCEEECTT--C-CCHHHHHHHHHHHHT---STTCCCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH---HHhhCCCcceEECCC--C-CCchHHHHHHHHHhc---cCCccce
Confidence               11  12567788888776665421   022   344577778888877  3 322     1111100   0224777


Q ss_pred             eEEeecCCCCCcc-----C-CCCCCCCCCEEeccCCCCCCcCCCC----C---CCCCcceEEeeCCc
Q 039619          289 HLSIWNFPNLERI-----S-SIENLTSFESLQLCCCPKLQKFPDN----G---LPTSLLRLEIYGCP  342 (459)
Q Consensus       289 ~L~l~~c~~l~~l-----~-~l~~l~~L~~L~l~~c~~l~~lp~~----~---l~~sL~~L~i~~c~  342 (459)
                      +|++++| .++..     + .+..+++|++|++++| .+......    .   ..++|++|++++|.
T Consensus       317 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          317 SLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             EEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             eeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            7777774 34432     2 3445677777777775 34332110    0   13477777777774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.29  E-value=3.6e-11  Score=110.07  Aligned_cols=135  Identities=17%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCccccccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCccccccc
Q 039619          168 NLESIAEGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLI  244 (459)
Q Consensus       168 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~  244 (459)
                      .++.+|..+.  ++|++|+++++. +..+ |..+..+++|++|+++++ .++.++..  ..+++|++|++++|.++... 
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-  104 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLP-  104 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-
T ss_pred             CcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccC-
Confidence            3444444332  455555555542 2222 334445555555555443 23333321  11233333333333332221 


Q ss_pred             ccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          245 LERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       245 ~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                      +.   .+..+++|++|++++   +.+..+|..+    ..+++|+.|++++ +.++.++  .+..+++|+.|++.++
T Consensus       105 ~~---~~~~l~~L~~L~Ls~---N~l~~lp~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          105 SA---VFDRLVHLKELFMCC---NKLTELPRGI----ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TT---TTTTCTTCCEEECCS---SCCCSCCTTG----GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             hh---HhCcchhhCeEeccC---CcccccCccc----ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence            11   345566666666665   3455555544    2445566666655 4555555  3455555555555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.27  E-value=3.1e-14  Score=148.95  Aligned_cols=289  Identities=16%  Similarity=0.144  Sum_probs=163.4

Q ss_pred             CCCCCCeEeccCCCccCcccc--------------cCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCC-CC
Q 039619           23 RFPKRQRSSQQDLDESEYSEE--------------VEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNG-PV   87 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~--------------~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l   87 (459)
                      .|++|++|++.++........              .....+++|++|.+.++. +.....             .... .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~-------------~~l~~~~  129 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL-------------ELIAKSF  129 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH-------------HHHHHHC
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH-------------HHHHHhC
Confidence            578899998888764322111              112347788888888764 211000             0111 23


Q ss_pred             CCCcCceEEeCCCCCCCCCc---------cc-eeEEEEecCCCCcc-----ccCCccccccCcEEEeecCC-Ccee--ec
Q 039619           88 SVTLKDPEVLDCPVCYEPLT---------IP-VYQLQIIPCPSLTS-----LWSKSELPATLENIYVDRCS-KLAF--LS  149 (459)
Q Consensus        88 p~~L~~L~l~~c~~l~~l~~---------lp-L~~L~l~~c~~l~~-----lp~~~~~~~~L~~L~l~~c~-~l~~--l~  149 (459)
                       ++|++|++++|   ..++.         +| |++|++++|. ++.     ++......++|++|++++|. .+..  ++
T Consensus       130 -~~L~~L~L~~~---~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          130 -KNFKVLVLSSC---EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             -TTCCEEEEESC---EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             -CCCcEEeCCCc---CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence             38899999887   33332         23 8888888765 322     33222344688899888875 1111  11


Q ss_pred             -cccccccccceEEeecccCCccccccCCCCCcccEEeeccc-------------------cCccc-----------Ccc
Q 039619          150 -LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFIC-------------------QNLKA-----------LPN  198 (459)
Q Consensus       150 -~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c-------------------~~l~~-----------lp~  198 (459)
                       ....+ ++|++|++++|..+..++..+..+++|++|++..|                   .+++.           ++.
T Consensus       205 ~l~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~  283 (594)
T 2p1m_B          205 RLVTRC-PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA  283 (594)
T ss_dssp             HHHHHC-TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred             HHHHhC-CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence             11345 78899999888777777777777888888875544                   22222           111


Q ss_pred             cCCCCCCccEEeeccCCCCccc--cC-CCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC------cCCC
Q 039619          199 GLRNLTSLQYLLIQDCPTIGSF--TA-NCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG------ECCG  269 (459)
Q Consensus       199 ~l~~l~~L~~L~l~~c~~l~~l--p~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~------~c~~  269 (459)
                      .+..+++|++|++++|. +...  .. ...+++|++|++.++ +.+.....   ....+++|++|++.++      .|..
T Consensus       284 ~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~---l~~~~~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV---LASTCKDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH---HHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred             HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH---HHHhCCCCCEEEEecCcccccccCCC
Confidence            12245677777777766 4321  11 134577888888764 22111010   1134677888888540      0222


Q ss_pred             ceecCC-CCCCCccCCCCcceEEeecCCCCCccC--CC-CCCCCCCEEecc-----CCCCCCcCCCC-C------CCCCc
Q 039619          270 VVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS--SI-ENLTSFESLQLC-----CCPKLQKFPDN-G------LPTSL  333 (459)
Q Consensus       270 l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l-~~l~~L~~L~l~-----~c~~l~~lp~~-~------l~~sL  333 (459)
                      +..... ..   ...+++|++|.+. |+.++...  .+ ..+++|++|+++     +|..++..|.. +      -+++|
T Consensus       359 l~~~~l~~l---~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L  434 (594)
T 2p1m_B          359 LTEQGLVSV---SMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL  434 (594)
T ss_dssp             CCHHHHHHH---HHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHH---HHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence            211000 00   0024678888554 46666433  22 257899999998     67788766531 1      15789


Q ss_pred             ceEEeeC
Q 039619          334 LRLEIYG  340 (459)
Q Consensus       334 ~~L~i~~  340 (459)
                      ++|++.+
T Consensus       435 ~~L~L~~  441 (594)
T 2p1m_B          435 RRLSLSG  441 (594)
T ss_dssp             CEEECCS
T ss_pred             cEEeecC
Confidence            9999976

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=1.6e-11  Score=120.37  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=58.1

Q ss_pred             cEEEeecCCCceeeccccccccccceEEeecccCCcccccc-CC-CCCcccEEeeccccCcccCc-ccCCCCCCccEEee
Q 039619          135 ENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEG-LD-DNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLI  211 (459)
Q Consensus       135 ~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l  211 (459)
                      +.+++++ ..++.+|.  .+|+.++.|+++++ .++.++.. +. .+++|++|+++++ .+..++ ..+..+++|++|++
T Consensus        21 ~~l~c~~-~~l~~iP~--~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQ--SLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCS-SCCSSCCS--SCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCC-CCcCccCc--cCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence            4455544 34555552  23355666666653 45555433 33 5666666666665 344443 34556666666666


Q ss_pred             ccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          212 QDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       212 ~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      +++ .++.++..  ..+++|++|++++|.+.... +.   .+..+++|+.|++++
T Consensus        96 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~---~~~~l~~L~~L~L~~  145 (361)
T 2xot_A           96 SSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RN---AFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             CSS-CCCEECTTTTTTCTTCCEEECCSSCCCEEC-TT---TTTTCTTCCEEECCS
T ss_pred             CCC-cCCcCCHHHhCCCcCCCEEECCCCcccEEC-HH---HhCCcccCCEEECCC
Confidence            553 34444432  12344444444444333221 22   344555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.21  E-value=2.3e-10  Score=104.04  Aligned_cols=144  Identities=15%  Similarity=0.250  Sum_probs=81.2

Q ss_pred             eEEeecccCCccccccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCc
Q 039619          160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEK  238 (459)
Q Consensus       160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~  238 (459)
                      .++.++ ..++.+|..+.  ++|+.|+++++ .++.++. .+..+++|+.|+++++ .+..+.                 
T Consensus        15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~-----------------   72 (220)
T 2v9t_B           15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELA-----------------   72 (220)
T ss_dssp             EEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEEC-----------------
T ss_pred             EEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcC-----------------
Confidence            444444 34556665443  56666666665 3444433 4555666666666553 233332                 


Q ss_pred             ccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEecc
Q 039619          239 IYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLC  316 (459)
Q Consensus       239 l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~  316 (459)
                            +.   .+.++++|++|++++   +.+..+|...   ...+++|++|++++ +.++.++  .+..+++|++|+++
T Consensus        73 ------~~---~~~~l~~L~~L~Ls~---N~l~~l~~~~---f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           73 ------PD---AFQGLRSLNSLVLYG---NKITELPKSL---FEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             ------TT---TTTTCSSCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ------HH---HhhCCcCCCEEECCC---CcCCccCHhH---ccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECC
Confidence                  22   456666666666666   4555555532   01356667777766 5666664  56667777777777


Q ss_pred             CCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          317 CCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       317 ~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      ++ .++.++...+  +++|+.|++++++
T Consensus       137 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          137 DN-KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             SS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            63 5666654322  4667777776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.19  E-value=1.5e-10  Score=104.08  Aligned_cols=125  Identities=24%  Similarity=0.316  Sum_probs=61.1

Q ss_pred             cccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccccc-CCCCCcccEEeeccccCcccCccc-CCCCCCc
Q 039619          131 PATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETMEIFICQNLKALPNG-LRNLTSL  206 (459)
Q Consensus       131 ~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L  206 (459)
                      +++|++|+++++ .++.++.  ...+ ++|++|+++++ .++.++.. +..+++|++|+++++ .+..+|.. +..+++|
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDEL-TSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTC-TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhccc-ccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCC
Confidence            346666666663 4444442  2345 56666666653 44444432 355666666666655 34444432 3556666


Q ss_pred             cEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          207 QYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       207 ~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      ++|+++++ .++.++..  ..+++|++|+++++.++... +.   .+..+++|++|++++
T Consensus       103 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~---~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A          103 KELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DG---VFDRLTSLQYIWLHD  157 (208)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TT---TTTTCTTCCEEECCS
T ss_pred             CEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeC-HH---HhccCCCccEEEecC
Confidence            66666553 34444432  22344555555444443222 11   234445555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.18  E-value=3e-10  Score=103.87  Aligned_cols=145  Identities=21%  Similarity=0.247  Sum_probs=114.1

Q ss_pred             ccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCE
Q 039619          182 LETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRL  259 (459)
Q Consensus       182 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~  259 (459)
                      .+.++.++. .+..+|..+  .++|++|+++++. +..++..  ..+++|++|+++++.+.... +.   .+..+++|+.
T Consensus        21 ~~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~---~~~~l~~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAGI--PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALP-VG---VFDSLTQLTV   92 (229)
T ss_dssp             TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT---TTTTCTTCCE
T ss_pred             CCEeEccCC-CcCccCCCC--CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcC-hh---hcccCCCcCE
Confidence            456776654 678888765  3899999999864 5555433  45789999999998886543 33   5788999999


Q ss_pred             EEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceE
Q 039619          260 LTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRL  336 (459)
Q Consensus       260 L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L  336 (459)
                      |++++   +.+..++...   ...+++|++|++++ +.++.+| .+..+++|++|+++++ +++.++...+  +++|+.|
T Consensus        93 L~Ls~---N~l~~l~~~~---~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           93 LDLGT---NQLTVLPSAV---FDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             EECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             EECCC---CcCCccChhH---hCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence            99998   5777777643   12678999999999 8899999 8899999999999984 7888886433  6899999


Q ss_pred             EeeCCc
Q 039619          337 EIYGCP  342 (459)
Q Consensus       337 ~i~~c~  342 (459)
                      ++.+++
T Consensus       165 ~l~~N~  170 (229)
T 3e6j_A          165 YLFGNP  170 (229)
T ss_dssp             ECTTSC
T ss_pred             EeeCCC
Confidence            998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=3.7e-13  Score=136.32  Aligned_cols=222  Identities=18%  Similarity=0.211  Sum_probs=118.0

Q ss_pred             cCcEEEeecCCCcee-----ec-cccccccccceEEeecccCCccc-----ccc-CCCCCcccEEeeccccCcc-----c
Q 039619          133 TLENIYVDRCSKLAF-----LS-LRGNLSKALKHLYIISCSNLESI-----AEG-LDDNTSLETMEIFICQNLK-----A  195 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~-----l~-~~~~lp~~L~~L~l~~c~~l~~l-----p~~-l~~l~~L~~L~l~~c~~l~-----~  195 (459)
                      +|++|++++|. +..     ++ ....+ ++|++|+++++. +...     ... ....++|++|++++|. +.     .
T Consensus        86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~  161 (461)
T 1z7x_W           86 KIQKLSLQNCC-LTGAGCGVLSSTLRTL-PTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP  161 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHTTSC-TTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred             ceeEEEccCCC-CCHHHHHHHHHHHccC-CceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence            57777777653 332     22 12345 677777777653 3321     111 1224567777777763 32     2


Q ss_pred             CcccCCCCCCccEEeeccCCCCccccCCC-------CCCCccEEEEecCcccccc---cccCCCCCCCCCccCEEEEeCC
Q 039619          196 LPNGLRNLTSLQYLLIQDCPTIGSFTANC-------FPTNLASVCIDYEKIYKPL---ILERGPGLHRFTSVRLLTLFGG  265 (459)
Q Consensus       196 lp~~l~~l~~L~~L~l~~c~~l~~lp~~~-------~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~L~~L~l~~~  265 (459)
                      ++..+..+++|++|++++|. +.......       ..++|++|+++++.++...   ++.   .+..+++|++|++++ 
T Consensus       162 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~---~l~~~~~L~~L~Ls~-  236 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG---IVASKASLRELALGS-  236 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH---HHHHCTTCCEEECCS-
T ss_pred             HHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH---HHHhCCCccEEeccC-
Confidence            23444556777777777654 33221110       1347788888776665420   022   345677888888887 


Q ss_pred             cCCCcee-----cCCCCCCCccCCCCcceEEeecCCCCCc-----cC-CCCCCCCCCEEeccCCCCCCcCCCC-------
Q 039619          266 ECCGVVS-----FPPEKDTGKALPASLKHLSIWNFPNLER-----IS-SIENLTSFESLQLCCCPKLQKFPDN-------  327 (459)
Q Consensus       266 ~c~~l~~-----l~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~-~l~~l~~L~~L~l~~c~~l~~lp~~-------  327 (459)
                       | .+..     +.....   ...++|++|++++| .++.     ++ .+..+++|++|++++| .+......       
T Consensus       237 -n-~l~~~~~~~l~~~~~---~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~  309 (461)
T 1z7x_W          237 -N-KLGDVGMAELCPGLL---HPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLL  309 (461)
T ss_dssp             -S-BCHHHHHHHHHHHHT---STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHT
T ss_pred             -C-cCChHHHHHHHHHHh---cCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhc
Confidence             3 3222     111110   13567888888884 6665     44 5556788888888876 34321100       


Q ss_pred             CCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619          328 GLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY  371 (459)
Q Consensus       328 ~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~  371 (459)
                      ...++|++|++++|.--...+.. -........++..+.+.++.
T Consensus       310 ~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          310 EPGCQLESLWVKSCSFTAACCSH-FSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHH-HHHHHHHCSSCCEEECCSSB
T ss_pred             cCCccceeeEcCCCCCchHHHHH-HHHHHhhCCCccEEEccCCc
Confidence            01258888888888521111000 00012234577788888773

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.17  E-value=2.5e-10  Score=103.71  Aligned_cols=61  Identities=16%  Similarity=0.254  Sum_probs=32.7

Q ss_pred             CCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                      .+..+++|++|++++   +.+..++ ..+    ..+++|++|++++ +.++.++  .+..+++|++|+++++
T Consensus       100 ~~~~l~~L~~L~Ls~---N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          100 MFKGLESLKTLMLRS---NRITCVGNDSF----IGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             GGTTCSSCCEEECTT---SCCCCBCTTSS----TTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             HhcCCcCCCEEECCC---CcCCeECHhHc----CCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCc
Confidence            345566666666665   3444442 222    1345566666665 4555553  5555666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.17  E-value=1.8e-10  Score=112.86  Aligned_cols=167  Identities=19%  Similarity=0.194  Sum_probs=127.1

Q ss_pred             cceEEeecccCCccccccCCCCCcccEEeeccccCcccCccc-CC-CCCCccEEeeccCCCCccccCC--CCCCCccEEE
Q 039619          158 LKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNG-LR-NLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVC  233 (459)
Q Consensus       158 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~  233 (459)
                      -+.+++++ ..++.+|..+.  +.++.|+++++ .+..++.. +. .+++|+.|+++++ .+..++..  ..+++|++|+
T Consensus        20 ~~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSCSK-QQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TTEEECCS-SCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCC-CCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEE
Confidence            35677776 47888987663  57999999997 56666554 55 8999999999885 57777654  4478999999


Q ss_pred             EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC-C-C---CCC
Q 039619          234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS-S-I---ENL  307 (459)
Q Consensus       234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~-l---~~l  307 (459)
                      +++|.++... +.   .+..+++|+.|++++   +.+..++ ..+    ..+++|+.|++++ +.++.+| . +   ..+
T Consensus        95 Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---N~i~~~~~~~~----~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l  162 (361)
T 2xot_A           95 LSSNHLHTLD-EF---LFSDLQALEVLLLYN---NHIVVVDRNAF----EDMAQLQKLYLSQ-NQISRFPVELIKDGNKL  162 (361)
T ss_dssp             CCSSCCCEEC-TT---TTTTCTTCCEEECCS---SCCCEECTTTT----TTCTTCCEEECCS-SCCCSCCGGGTC----C
T ss_pred             CCCCcCCcCC-HH---HhCCCcCCCEEECCC---CcccEECHHHh----CCcccCCEEECCC-CcCCeeCHHHhcCcccC
Confidence            9998887554 33   678999999999999   4666664 334    3678999999999 8999998 3 3   679


Q ss_pred             CCCCEEeccCCCCCCcCCCCCC--CCC--cceEEeeCCc
Q 039619          308 TSFESLQLCCCPKLQKFPDNGL--PTS--LLRLEIYGCP  342 (459)
Q Consensus       308 ~~L~~L~l~~c~~l~~lp~~~l--~~s--L~~L~i~~c~  342 (459)
                      ++|+.|++++ ++++.+|...+  ++.  ++.|++.++|
T Consensus       163 ~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          163 PKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             TTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence            9999999998 47888874322  343  5889998864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.16  E-value=4.8e-10  Score=101.83  Aligned_cols=146  Identities=16%  Similarity=0.241  Sum_probs=99.1

Q ss_pred             cEEEeecCCCceeeccccccccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCcccCCCCCCccEEeecc
Q 039619          135 ENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQD  213 (459)
Q Consensus       135 ~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  213 (459)
                      +.++.++ ..++.+|.  .+|++|++|+++++ .++.++. .+..+++|++|+++++.--...|..+..+++|++|++++
T Consensus        14 ~~v~c~~-~~l~~iP~--~l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRG-KGLTEIPT--NLPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTT-SCCSSCCS--SCCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCC-CCcCcCCC--ccCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            5677766 46788874  34589999999995 6777754 788899999999999843333477889999999999988


Q ss_pred             CCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEe
Q 039619          214 CPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSI  292 (459)
Q Consensus       214 c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l  292 (459)
                      + .++.+|..                          .+..+++|++|++++   +.+..++. .+    ..+++|+.|++
T Consensus        90 N-~l~~l~~~--------------------------~f~~l~~L~~L~L~~---N~l~~~~~~~~----~~l~~L~~L~L  135 (220)
T 2v9t_B           90 N-KITELPKS--------------------------LFEGLFSLQLLLLNA---NKINCLRVDAF----QDLHNLNLLSL  135 (220)
T ss_dssp             S-CCCCCCTT--------------------------TTTTCTTCCEEECCS---SCCCCCCTTTT----TTCTTCCEEEC
T ss_pred             C-cCCccCHh--------------------------HccCCCCCCEEECCC---CCCCEeCHHHc----CCCCCCCEEEC
Confidence            5 56666542                          234555566666655   34444432 22    23456666666


Q ss_pred             ecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619          293 WNFPNLERIS--SIENLTSFESLQLCCCP  319 (459)
Q Consensus       293 ~~c~~l~~l~--~l~~l~~L~~L~l~~c~  319 (459)
                      ++ +.++.++  .+..+++|++|++++++
T Consensus       136 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          136 YD-NKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            66 5666665  46667777888777753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.15  E-value=9.1e-10  Score=98.92  Aligned_cols=127  Identities=25%  Similarity=0.327  Sum_probs=63.3

Q ss_pred             cccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCccc-CCCCCCccEEeeccCCCCccccCCCCCCCccEEE
Q 039619          156 KALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPNG-LRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVC  233 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~  233 (459)
                      ++|++|+++++ .++.++. .+..+++|++|+++++ .++.+|.. +..+++|++|+++++ .++.++..          
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~----------   94 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNG----------   94 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----------
T ss_pred             CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHh----------
Confidence            56666666664 4444443 2455666666666665 44444432 355666666666554 34444322          


Q ss_pred             EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCC
Q 039619          234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFE  311 (459)
Q Consensus       234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~  311 (459)
                                      .+..+++|++|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..+++|+
T Consensus        95 ----------------~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~  151 (208)
T 2o6s_A           95 ----------------VFDKLTQLKELALNT---NQLQSLPDGV---FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQ  151 (208)
T ss_dssp             ----------------TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCC
T ss_pred             ----------------HhcCccCCCEEEcCC---CcCcccCHhH---hccCCcCCEEECCC-CccceeCHHHhccCCCcc
Confidence                            234455555555554   2344443321   01344555555555 3444444  244555555


Q ss_pred             EEeccCC
Q 039619          312 SLQLCCC  318 (459)
Q Consensus       312 ~L~l~~c  318 (459)
                      +|+++++
T Consensus       152 ~L~l~~N  158 (208)
T 2o6s_A          152 YIWLHDN  158 (208)
T ss_dssp             EEECCSC
T ss_pred             EEEecCC
Confidence            5555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.11  E-value=1.5e-12  Score=128.89  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=16.2

Q ss_pred             CCCCCEEeccCCCCCCc-----CCCCC--CCCCcceEEeeCCc
Q 039619          307 LTSFESLQLCCCPKLQK-----FPDNG--LPTSLLRLEIYGCP  342 (459)
Q Consensus       307 l~~L~~L~l~~c~~l~~-----lp~~~--l~~sL~~L~i~~c~  342 (459)
                      +++|++|++++| .+..     ++...  .+++|++|++++|+
T Consensus       273 ~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          273 NIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            555555555554 2333     33210  13555555555553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.10  E-value=9.9e-10  Score=99.74  Aligned_cols=141  Identities=12%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             EEEEecCCCCccccCCccccccCcEEEeecCCCceeecc---ccccccccceEEeecccCCccccc-cCCCCCcccEEee
Q 039619          112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL---RGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEI  187 (459)
Q Consensus       112 ~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~---~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l  187 (459)
                      .+++++ ..++.+|.  ..+..+++|++++ +.++.++.   ...+ ++|++|+++++ .++.++. .+..+++|++|++
T Consensus        15 ~l~~s~-n~l~~iP~--~~~~~~~~L~L~~-N~l~~~~~~~~~~~l-~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           15 TVDCSN-QKLNKIPE--HIPQYTAELRLNN-NEFTVLEATGIFKKL-PQLRKINFSNN-KITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             EEECCS-SCCSSCCS--CCCTTCSEEECCS-SCCCEECCCCCGGGC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             EeEeCC-CCcccCcc--CCCCCCCEEEcCC-CcCCccCchhhhccC-CCCCEEECCCC-cCCEECHHHhCCCCCCCEEEC
Confidence            344443 34555552  2234556666666 34555421   2345 66666666653 3444433 4566666666666


Q ss_pred             ccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          188 FICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       188 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      +++ .+..++. .+..+++|++|+++++ .+..++..  ..+++|++|++++|.++... +.   .+..+++|+.|++++
T Consensus        89 s~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           89 TSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVA-PG---AFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TT---TTTTCTTCCEEECCS
T ss_pred             CCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEEC-HH---HhcCCCCCCEEEecC
Confidence            665 3333332 3555666666666553 33333221  22344444444444443322 22   334444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.08  E-value=3.4e-12  Score=126.36  Aligned_cols=216  Identities=13%  Similarity=0.111  Sum_probs=114.3

Q ss_pred             CcCceEEeCCCCC--------CCCCccc-eeEEEEecCC--CCc-cccCCc-------cccccCcEEEeecCCCcee---
Q 039619           90 TLKDPEVLDCPVC--------YEPLTIP-VYQLQIIPCP--SLT-SLWSKS-------ELPATLENIYVDRCSKLAF---  147 (459)
Q Consensus        90 ~L~~L~l~~c~~l--------~~l~~lp-L~~L~l~~c~--~l~-~lp~~~-------~~~~~L~~L~l~~c~~l~~---  147 (459)
                      +|++|++++|.--        ..+..++ |++|++++|.  .+. .+|...       ..+++|++|+++++ .+..   
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~  111 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQ  111 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHH
Confidence            6777777775210        0022233 7777777652  221 122111       23457777777774 3333   


Q ss_pred             --ec-cccccccccceEEeecccCCcc-----ccccCCCC---------CcccEEeeccccCc-ccCc---ccCCCCCCc
Q 039619          148 --LS-LRGNLSKALKHLYIISCSNLES-----IAEGLDDN---------TSLETMEIFICQNL-KALP---NGLRNLTSL  206 (459)
Q Consensus       148 --l~-~~~~lp~~L~~L~l~~c~~l~~-----lp~~l~~l---------~~L~~L~l~~c~~l-~~lp---~~l~~l~~L  206 (459)
                        ++ ....+ ++|++|++++|. +..     ++..+..+         ++|++|++++|.-- ..++   ..+..+++|
T Consensus       112 ~~l~~~l~~~-~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          112 EPLIDFLSKH-TPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHHHHHC-TTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhC-CCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence              22 11345 677777777753 321     22223333         67777777776321 1233   344566777


Q ss_pred             cEEeeccCCCCc------ccc-CCCCCCCccEEEEecCccc----ccccccCCCCCCCCCccCEEEEeCCcCCCcee---
Q 039619          207 QYLLIQDCPTIG------SFT-ANCFPTNLASVCIDYEKIY----KPLILERGPGLHRFTSVRLLTLFGGECCGVVS---  272 (459)
Q Consensus       207 ~~L~l~~c~~l~------~lp-~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~---  272 (459)
                      ++|++++|. +.      .++ ....+++|++|+++++.++    ... +.   .+..+++|++|++++  |. +..   
T Consensus       190 ~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~---~l~~~~~L~~L~L~~--n~-i~~~~~  261 (386)
T 2ca6_A          190 HTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AI---ALKSWPNLRELGLND--CL-LSARGA  261 (386)
T ss_dssp             CEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HH---HGGGCTTCCEEECTT--CC-CCHHHH
T ss_pred             CEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HH---HHccCCCcCEEECCC--CC-CchhhH
Confidence            777777653 33      122 1234567777777776664    122 22   456677777777777  32 221   


Q ss_pred             --cCCCCCCCccCCCCcceEEeecCCCCCc-----cC-CC-CCCCCCCEEeccCCC
Q 039619          273 --FPPEKDTGKALPASLKHLSIWNFPNLER-----IS-SI-ENLTSFESLQLCCCP  319 (459)
Q Consensus       273 --l~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~-~l-~~l~~L~~L~l~~c~  319 (459)
                        ++....  ....++|++|++++ +.++.     ++ .+ .++++|++|++++|+
T Consensus       262 ~~l~~~l~--~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          262 AAVVDAFS--KLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHH--TCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHh--hccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence              222110  00256777777777 45655     55 44 446777777777753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=1.5e-12  Score=135.20  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=62.6

Q ss_pred             CccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCC
Q 039619          205 SLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALP  284 (459)
Q Consensus       205 ~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~  284 (459)
                      .|+.|+++++ .++.+|..+.+++|+.|++++|.++ .+ |.   .+..+++|+.|++++   +.+..+| .+    ..+
T Consensus       442 ~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~-~l-p~---~~~~l~~L~~L~Ls~---N~l~~lp-~l----~~l  507 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLR-AL-PP---ALAALRCLEVLQASD---NALENVD-GV----ANL  507 (567)
T ss_dssp             TCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCC-CC-CG---GGGGCTTCCEEECCS---SCCCCCG-GG----TTC
T ss_pred             CceEEEecCC-CCCCCcCccccccCcEeecCccccc-cc-ch---hhhcCCCCCEEECCC---CCCCCCc-cc----CCC
Confidence            3566666554 4555554344556666666665555 22 33   556667777777766   3555565 33    256


Q ss_pred             CCcceEEeecCCCCCcc--C-CCCCCCCCCEEeccCCCCCCcCCC
Q 039619          285 ASLKHLSIWNFPNLERI--S-SIENLTSFESLQLCCCPKLQKFPD  326 (459)
Q Consensus       285 ~~L~~L~l~~c~~l~~l--~-~l~~l~~L~~L~l~~c~~l~~lp~  326 (459)
                      ++|+.|++++ +.++.+  | .+..+++|+.|+++++ .++.+|.
T Consensus       508 ~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~  550 (567)
T 1dce_A          508 PRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEG  550 (567)
T ss_dssp             SSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred             CCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence            6777777776 566665  5 6666777777777664 4554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.05  E-value=3e-10  Score=98.40  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=25.3

Q ss_pred             cccceEEeecccCCc--cccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccC
Q 039619          156 KALKHLYIISCSNLE--SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDC  214 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  214 (459)
                      ++|++|++++|. +.  .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|
T Consensus        24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC
T ss_pred             ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC
Confidence            444444444432 32  444444444555555555442 3333 33444445555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.05  E-value=1.7e-12  Score=134.78  Aligned_cols=116  Identities=14%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             ccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEE
Q 039619          182 LETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLL  260 (459)
Q Consensus       182 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L  260 (459)
                      |+.|+++++ .++.+|. ++.+++|+.|+++++ .++.+|.. +.+++|+.|++++|.++...      .+..+++|+.|
T Consensus       443 L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp------~l~~l~~L~~L  513 (567)
T 1dce_A          443 VRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD------GVANLPRLQEL  513 (567)
T ss_dssp             CSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEE
T ss_pred             ceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc------ccCCCCCCcEE
Confidence            445555544 3444443 444555555555443 23344432 33445555555554444322      34556666666


Q ss_pred             EEeCCcCCCceec--CCCCCCCccCCCCcceEEeecCCCCCccC-CC----CCCCCCCEEe
Q 039619          261 TLFGGECCGVVSF--PPEKDTGKALPASLKHLSIWNFPNLERIS-SI----ENLTSFESLQ  314 (459)
Q Consensus       261 ~l~~~~c~~l~~l--~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l----~~l~~L~~L~  314 (459)
                      ++++   +.+..+  |..+    ..+++|+.|++++ |.++.+| ..    ..+++|+.|+
T Consensus       514 ~Ls~---N~l~~~~~p~~l----~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          514 LLCN---NRLQQSAAIQPL----VSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             ECCS---SCCCSSSTTGGG----GGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ECCC---CCCCCCCCcHHH----hcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence            6665   344444  4433    2455666666666 4555554 22    1256666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.04  E-value=4.9e-10  Score=97.04  Aligned_cols=127  Identities=13%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             CCCcccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCC
Q 039619          178 DNTSLETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFT  255 (459)
Q Consensus       178 ~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  255 (459)
                      ..++|++|++++|. +.  .+|..+..+++|+.|++++|. ++.++....+++|++|+++++.+.... +.   .+..++
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~~~~l~   95 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGL-DM---LAEKLP   95 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCC-CH---HHHHCT
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHH-HH---HHhhCC
Confidence            35789999999984 55  788777888999999998865 555533344667777777776665422 22   334466


Q ss_pred             ccCEEEEeCCcCCCceecC--CCCCCCccCCCCcceEEeecCCCCCccC-----CCCCCCCCCEEeccCC
Q 039619          256 SVRLLTLFGGECCGVVSFP--PEKDTGKALPASLKHLSIWNFPNLERIS-----SIENLTSFESLQLCCC  318 (459)
Q Consensus       256 ~L~~L~l~~~~c~~l~~l~--~~~~~~~~~~~~L~~L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~c  318 (459)
                      +|+.|++++   +.+..++  ..+    ..+++|+.|++++ +.+..++     .+..+++|++|++++|
T Consensus        96 ~L~~L~Ls~---N~l~~~~~~~~l----~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           96 NLTHLNLSG---NKLKDISTLEPL----KKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             TCCEEECBS---SSCCSSGGGGGG----SSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCEEeccC---CccCcchhHHHH----hcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            777777766   2444443  222    1455666666666 4455444     2445666666666664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.01  E-value=5.2e-12  Score=123.95  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=14.8

Q ss_pred             CcceEEeecCCCCCccC------CCCCCCCCCEEeccCC
Q 039619          286 SLKHLSIWNFPNLERIS------SIENLTSFESLQLCCC  318 (459)
Q Consensus       286 ~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c  318 (459)
                      +|++|++++ +.++..+      .+..+++|++|++++|
T Consensus       226 ~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          226 HVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             TCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             CceEEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            455555555 3444332      2344455555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=1.5e-11  Score=120.58  Aligned_cols=56  Identities=18%  Similarity=0.053  Sum_probs=27.1

Q ss_pred             CCcceEEeecCCCCCc-----cC-CCCC-CCCCCEEeccCCCCCCcCCCC------CCCCCcceEEeeCCc
Q 039619          285 ASLKHLSIWNFPNLER-----IS-SIEN-LTSFESLQLCCCPKLQKFPDN------GLPTSLLRLEIYGCP  342 (459)
Q Consensus       285 ~~L~~L~l~~c~~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~lp~~------~l~~sL~~L~i~~c~  342 (459)
                      ++|++|++++ +.++.     ++ .+.. .++|++|++++| .++..+..      .-.++|++|++++|.
T Consensus       196 ~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          196 ASVTSLDLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTCCEEECTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCEEECCC-CCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            3566666665 44544     22 2222 236666666664 34433210      113556666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.93  E-value=5.5e-10  Score=94.68  Aligned_cols=102  Identities=20%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             cccceEEeecccCCc--cccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCcc-ccCC-CCCCCccE
Q 039619          156 KALKHLYIISCSNLE--SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGS-FTAN-CFPTNLAS  231 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~~-~~~~~L~~  231 (459)
                      ++|++|++++|. +.  .+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|. +.. +|.. ..+++|++
T Consensus        17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence            566666666653 33  56666666677777777666 44444 455666677777776643 333 3322 12455555


Q ss_pred             EEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      |+++++.++....+.   .+..+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~---~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           93 LNLSGNKIKDLSTIE---PLKKLENLKSLDLFN  122 (149)
T ss_dssp             EECTTSCCCSHHHHG---GGGGCTTCCEEECTT
T ss_pred             EECCCCcCCChHHHH---HHhhCCCCCEEeCcC
Confidence            555554444310012   345556666666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.93  E-value=5.8e-10  Score=94.52  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             CCcccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCc
Q 039619          179 NTSLETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTS  256 (459)
Q Consensus       179 l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  256 (459)
                      .++|+.|++++|. +.  .+|..+..+++|+.|++++| .++.++....+++|++|+++++.+.... +.   .+..+++
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~---~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGL-EV---LAEKCPN   89 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCT-HH---HHHHCTT
T ss_pred             CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchH-HH---HhhhCCC
Confidence            4788899999884 54  77777788888999998876 4555432233455555555554444322 21   2233445


Q ss_pred             cCEEEEeC
Q 039619          257 VRLLTLFG  264 (459)
Q Consensus       257 L~~L~l~~  264 (459)
                      |++|++++
T Consensus        90 L~~L~ls~   97 (149)
T 2je0_A           90 LTHLNLSG   97 (149)
T ss_dssp             CCEEECTT
T ss_pred             CCEEECCC
Confidence            55555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=5.3e-09  Score=100.98  Aligned_cols=33  Identities=12%  Similarity=0.265  Sum_probs=21.2

Q ss_pred             cccceEEeecccCCccccc-cCCCCCcccEEeeccc
Q 039619          156 KALKHLYIISCSNLESIAE-GLDDNTSLETMEIFIC  190 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c  190 (459)
                      ++|++|++.+  .++.+++ .+..+++|+.+++.++
T Consensus       101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred             CCCcEEECCc--cccchhHHHhhcCcccceEEcCCC
Confidence            6777777765  5666643 4666777777777665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.89  E-value=1.2e-08  Score=90.53  Aligned_cols=121  Identities=15%  Similarity=0.250  Sum_probs=57.6

Q ss_pred             eEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcc
Q 039619          160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKI  239 (459)
Q Consensus       160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l  239 (459)
                      .+++++ ..++.+|..+  .++|++|+++++ .++.+|..+..+++|+.|+++++ .++.++.                 
T Consensus        14 ~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~-----------------   71 (193)
T 2wfh_A           14 VVRCSN-KGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSN-----------------   71 (193)
T ss_dssp             EEECTT-SCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCT-----------------
T ss_pred             EEEcCC-CCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCH-----------------
Confidence            344433 2344455433  245555555554 44455555555555555555543 2333321                 


Q ss_pred             cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccC
Q 039619          240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCC  317 (459)
Q Consensus       240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~  317 (459)
                            .   .+.++++|++|++++   +.+..++...   ...+++|+.|++++ +.++.++  .+..+++|+.|++++
T Consensus        72 ------~---~f~~l~~L~~L~Ls~---N~l~~i~~~~---f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           72 ------Q---SFSNMTQLLTLILSY---NRLRCIPPRT---FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             ------T---TTTTCTTCCEEECCS---SCCCBCCTTT---TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             ------h---HccCCCCCCEEECCC---CccCEeCHHH---hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence                  1   345555555555555   3344443321   01334555555555 4455554  345556666666655


Q ss_pred             C
Q 039619          318 C  318 (459)
Q Consensus       318 c  318 (459)
                      +
T Consensus       136 N  136 (193)
T 2wfh_A          136 N  136 (193)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.87  E-value=1.3e-08  Score=90.41  Aligned_cols=120  Identities=12%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             cEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeecc
Q 039619          135 ENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQD  213 (459)
Q Consensus       135 ~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  213 (459)
                      +.+++++ +.++.+|.  .+|++|++|+++++ .++.+|..+..+++|++|+++++ .++.++ ..+..+++|++|++++
T Consensus        13 ~~l~~~~-~~l~~ip~--~~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPK--GIPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTT-SCCSSCCS--CCCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCC-CCCCcCCC--CCCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence            4555555 35666652  23367777777763 56677777777788888888776 455444 3467777788887776


Q ss_pred             CCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          214 CPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       214 c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      + .++.++..  ..+++|++|++++|.++... +.   .+..+++|+.|++++
T Consensus        88 N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVVP-EG---AFNDLSALSHLAIGA  135 (193)
T ss_dssp             S-CCCBCCTTTTTTCTTCCEEECCSSCCCBCC-TT---TTTTCTTCCEEECCS
T ss_pred             C-ccCEeCHHHhCCCCCCCEEECCCCCCCeeC-hh---hhhcCccccEEEeCC
Confidence            4 45555432  22344455554444443222 11   344555555555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.85  E-value=3e-10  Score=121.47  Aligned_cols=144  Identities=12%  Similarity=0.108  Sum_probs=78.9

Q ss_pred             CcCceEEeCCCCCCCCCccc---eeEEEEecC---------CCCccccCCccccccCcEEEeecCCCceeecc-cccccc
Q 039619           90 TLKDPEVLDCPVCYEPLTIP---VYQLQIIPC---------PSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSK  156 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp---L~~L~l~~c---------~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~  156 (459)
                      +++.|++.+    +.+...|   |+.++|+..         +.+...+.....+.+|+.|+|+++ .+..+|. ...+ +
T Consensus       174 ~~~~l~L~~----n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l-~  247 (727)
T 4b8c_D          174 LTPKIELFA----NGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKY-D  247 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGC-C
T ss_pred             ccceEEeeC----CCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCC-C
Confidence            466666665    3344444   444444331         222223333344567888888875 4556662 2466 7


Q ss_pred             ccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEe
Q 039619          157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCID  235 (459)
Q Consensus       157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~  235 (459)
                      +|++|+|+++ .+..+|..+..+++|++|+|+++ .+..+|..+..+++|++|+|++| .++.+|.. +.+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCC
Confidence            8888888875 56678887888888888888887 46677888888888888888775 56677754 446777777777


Q ss_pred             cCccccc
Q 039619          236 YEKIYKP  242 (459)
Q Consensus       236 ~~~l~~~  242 (459)
                      +|.+...
T Consensus       325 ~N~l~~~  331 (727)
T 4b8c_D          325 GNPLEKQ  331 (727)
T ss_dssp             TSCCCSH
T ss_pred             CCccCCC
Confidence            7766643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.82  E-value=3.5e-09  Score=92.42  Aligned_cols=79  Identities=25%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccC-CCCCcccEEeeccccCcccCcc--cCCCCCCccE
Q 039619          132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGL-DDNTSLETMEIFICQNLKALPN--GLRNLTSLQY  208 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~  208 (459)
                      ++|++|+++++ .++.++....+ ++|++|+++++ .+..+|..+ ..+++|++|+++++ .+..+|.  .+..+++|+.
T Consensus        42 ~~L~~L~Ls~N-~l~~~~~l~~l-~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           42 DQFDAIDFSDN-EIRKLDGFPLL-RRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTY  117 (176)
T ss_dssp             TCCSEEECCSS-CCCEECCCCCC-SSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCE
T ss_pred             CCCCEEECCCC-CCCcccccccC-CCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCE
Confidence            35566665553 44444433444 55555555553 344444333 45555555555554 3444443  4445555555


Q ss_pred             EeeccC
Q 039619          209 LLIQDC  214 (459)
Q Consensus       209 L~l~~c  214 (459)
                      |+++++
T Consensus       118 L~l~~N  123 (176)
T 1a9n_A          118 LCILRN  123 (176)
T ss_dssp             EECCSS
T ss_pred             EEecCC
Confidence            555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.82  E-value=1.8e-09  Score=94.25  Aligned_cols=88  Identities=14%  Similarity=0.106  Sum_probs=52.1

Q ss_pred             CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCCCCCcCCC
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCPKLQKFPD  326 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~lp~  326 (459)
                      .+..+++|++|++++   +.+..+|...   ...+++|++|++++ +.++.++   .+..+++|+.|++++| .+..+|.
T Consensus        59 ~l~~l~~L~~L~Ls~---N~l~~~~~~~---~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~  130 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNN---NRICRIGEGL---DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKH  130 (176)
T ss_dssp             CCCCCSSCCEEECCS---SCCCEECSCH---HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTT
T ss_pred             ccccCCCCCEEECCC---CcccccCcch---hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHh
Confidence            345566666666665   3455555322   01345666666666 5566555   3566777888888775 4555654


Q ss_pred             C-----CCCCCcceEEeeCCchhH
Q 039619          327 N-----GLPTSLLRLEIYGCPLIE  345 (459)
Q Consensus       327 ~-----~l~~sL~~L~i~~c~~L~  345 (459)
                      .     ..+++|+.|++.+++.-+
T Consensus       131 ~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          131 YRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHHHHHHCTTCSEETTEECCHHH
T ss_pred             HHHHHHHHCCccceeCCCcCCHHH
Confidence            2     126788888888776433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.82  E-value=4.4e-08  Score=85.37  Aligned_cols=85  Identities=22%  Similarity=0.284  Sum_probs=48.0

Q ss_pred             CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCC
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDN  327 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~  327 (459)
                      .+..+++|++|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..+++|++|+++++ .++.+|..
T Consensus        47 ~~~~l~~L~~L~l~~---n~l~~~~~~~---~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~  118 (177)
T 2o6r_A           47 VFDKLTQLTKLSLSQ---NQIQSLPDGV---FDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG  118 (177)
T ss_dssp             TTTTCTTCSEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             HhcCcccccEEECCC---CcceEeChhH---ccCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCHH
Confidence            345566666666665   3444554431   01455666666666 5566655  3456666777777664 55566553


Q ss_pred             CC--CCCcceEEeeCCc
Q 039619          328 GL--PTSLLRLEIYGCP  342 (459)
Q Consensus       328 ~l--~~sL~~L~i~~c~  342 (459)
                      .+  +++|++|++++++
T Consensus       119 ~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          119 IFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTTCTTCCEEECCSSC
T ss_pred             HhcCCcccCEEEecCCC
Confidence            22  4666677666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.80  E-value=3.5e-08  Score=87.43  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             cccceEEeecccCCcccccc--CCCCCcccEEeeccccCcccC-cccCCCCCCccEEeecc
Q 039619          156 KALKHLYIISCSNLESIAEG--LDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQD  213 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~--l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~  213 (459)
                      .+|++|+++++ .+..++..  +..+++|++|+++++ .++.+ |..+..+++|++|++++
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence            34444444442 33333321  344444444444443 22222 33344444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.78  E-value=4e-08  Score=87.03  Aligned_cols=102  Identities=16%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             eEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc---ccccccccceEEeecccCCccc-cccCCCCCcccEEe
Q 039619          111 YQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL---RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETME  186 (459)
Q Consensus       111 ~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~---~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~  186 (459)
                      +.+++++ ..++.+|..  .+.+|++|+++++ .++.++.   .+.+ ++|++|+++++ .++.+ |..+..+++|++|+
T Consensus        11 ~~l~~s~-~~l~~ip~~--~~~~l~~L~l~~n-~i~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRD--IPLHTTELLLNDN-ELGRISSDGLFGRL-PHLVKLELKRN-QLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTT-SCCSSCCSC--CCTTCSEEECCSC-CCCSBCCSCSGGGC-TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCC-CCcCcCccC--CCCCCCEEECCCC-cCCccCCccccccC-CCCCEEECCCC-CCCCcCHhHcCCcccCCEEE
Confidence            4556655 566777732  3348888888884 6666653   3567 88999999885 55555 67788899999999


Q ss_pred             eccccCcccCc-ccCCCCCCccEEeeccCCCCccc
Q 039619          187 IFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSF  220 (459)
Q Consensus       187 l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l  220 (459)
                      ++++ .+..++ ..+..+++|++|+++++ .+..+
T Consensus        85 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  117 (192)
T 1w8a_A           85 LGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCV  117 (192)
T ss_dssp             CCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEE
T ss_pred             CCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCee
Confidence            9987 455444 44778888888888775 34444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.77  E-value=4.1e-09  Score=112.69  Aligned_cols=153  Identities=14%  Similarity=0.092  Sum_probs=88.8

Q ss_pred             CccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccC
Q 039619          169 LESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILER  247 (459)
Q Consensus       169 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~  247 (459)
                      +...+..+..+++|+.|+++++ .+..+|..+..+++|++|+|+++ .+..+|.. +.+++|++|+|++|.++ .+ |. 
T Consensus       213 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~l-p~-  287 (727)
T 4b8c_D          213 MVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SL-PA-  287 (727)
T ss_dssp             ---------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SC-CS-
T ss_pred             eecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-cc-Ch-
Confidence            3344667788899999999887 56678887888899999999875 56677753 45678888888887776 33 44 


Q ss_pred             CCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCC-CCCEEeccCCCCCCcC
Q 039619          248 GPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLT-SFESLQLCCCPKLQKF  324 (459)
Q Consensus       248 ~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~-~L~~L~l~~c~~l~~l  324 (459)
                        .+..+++|++|++++   +.+..+|..++    .+++|+.|+|++ |.+...+  .+..+. .+..+++.++..-.  
T Consensus       288 --~~~~l~~L~~L~L~~---N~l~~lp~~~~----~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~--  355 (727)
T 4b8c_D          288 --ELGSCFQLKYFYFFD---NMVTTLPWEFG----NLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRPEI--  355 (727)
T ss_dssp             --SGGGGTTCSEEECCS---SCCCCCCSSTT----SCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCCCC--
T ss_pred             --hhcCCCCCCEEECCC---CCCCccChhhh----cCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCcccC--
Confidence              567778888888877   36667777653    667788888877 5555433  222111 11224555532211  


Q ss_pred             CCCCCCCCcceEEeeCC
Q 039619          325 PDNGLPTSLLRLEIYGC  341 (459)
Q Consensus       325 p~~~l~~sL~~L~i~~c  341 (459)
                         .+|..|+.|++..+
T Consensus       356 ---~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          356 ---PLPHERRFIEINTD  369 (727)
T ss_dssp             ---CCCCC---------
T ss_pred             ---cCccccceeEeecc
Confidence               13556777776655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.74  E-value=9.9e-08  Score=83.12  Aligned_cols=124  Identities=23%  Similarity=0.304  Sum_probs=76.7

Q ss_pred             cceEEeecccCCccccccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEec
Q 039619          158 LKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDY  236 (459)
Q Consensus       158 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~  236 (459)
                      .+.+++++ ..++.+|..+  .++|++|+++++ .+..+|. .+..+++|++|+++++ .++.++.              
T Consensus         9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------   69 (177)
T 2o6r_A            9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPD--------------   69 (177)
T ss_dssp             TTEEECCS-SCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT--------------
T ss_pred             CCEEEecC-CCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeCh--------------
Confidence            34555555 3455665443  356777777665 3444443 3456666666666654 3444432              


Q ss_pred             CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEe
Q 039619          237 EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQ  314 (459)
Q Consensus       237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~  314 (459)
                               .   .+..+++|+.|++++   +.+..++...   ...+++|++|++++ +.++.++  .+..+++|++|+
T Consensus        70 ---------~---~~~~l~~L~~L~l~~---N~l~~~~~~~---~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           70 ---------G---VFDKLTKLTILYLHE---NKLQSLPNGV---FDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             ---------T---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEE
T ss_pred             ---------h---HccCCCccCEEECCC---CCccccCHHH---hhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEE
Confidence                     1   356777788888877   4566666532   02467788888887 6777777  357788999999


Q ss_pred             ccCCC
Q 039619          315 LCCCP  319 (459)
Q Consensus       315 l~~c~  319 (459)
                      +++++
T Consensus       131 l~~N~  135 (177)
T 2o6r_A          131 LHTNP  135 (177)
T ss_dssp             CCSSC
T ss_pred             ecCCC
Confidence            98864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.67  E-value=1.7e-06  Score=85.61  Aligned_cols=206  Identities=11%  Similarity=0.145  Sum_probs=125.3

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccccccCCCCCcccEEee
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEI  187 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  187 (459)
                      |+.+.+..  .++.++...-.-.+|+.+.+.+  .++.++  ....+ ++|+.+++.+ ..++.++.......+|+.+.+
T Consensus       137 L~~i~l~~--~i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c-~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          137 IAKVVLNE--GLKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYC-YNLKKADLSK-TKITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CSEEECCT--TCCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTC-TTCCEEECTT-SCCSEECTTTTTTCCCSEEEC
T ss_pred             ccEEEeCC--CccEECHHhcCCCCceEEEeCC--CccEehHHHhhCc-ccCCeeecCC-CcceEechhhEeecccCEEEe
Confidence            66666643  3666653322124677777764  566665  22445 6788888865 366777666555677888877


Q ss_pred             ccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCC-CCCccEEEEec--CcccccccccCCCCCCCCCccCEEEEe
Q 039619          188 FICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCF-PTNLASVCIDY--EKIYKPLILERGPGLHRFTSVRLLTLF  263 (459)
Q Consensus       188 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~-~~~L~~L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~  263 (459)
                      ..  .++.++. .+..+++|+.+.+.+  .++.++...+ -.+|+.+.+.+  ..+.    .   ..+.++++|+.+.+.
T Consensus       211 p~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~----~---~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          211 PV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIA----S---RAFYYCPELAEVTTY  279 (401)
T ss_dssp             CT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETTCCEEC----T---TTTTTCTTCCEEEEE
T ss_pred             CC--chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCCccEEC----h---hHhhCCCCCCEEEeC
Confidence            63  3555543 456777888888764  3566655433 36778887754  2232    2   266778888888887


Q ss_pred             CCcCC---CceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceE
Q 039619          264 GGECC---GVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRL  336 (459)
Q Consensus       264 ~~~c~---~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L  336 (459)
                      ++ ..   ....++...   ...+++|+.+.+.  ++++.++  .+.++++|+.+.+..  +++.++...+  + +|+.+
T Consensus       280 ~~-~~~~~~~~~I~~~a---F~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l  350 (401)
T 4fdw_A          280 GS-TFNDDPEAMIHPYC---LEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEV  350 (401)
T ss_dssp             SS-CCCCCTTCEECTTT---TTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEE
T ss_pred             Cc-cccCCcccEECHHH---hhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEE
Confidence            62 00   112344432   1345678888777  3577777  677778888888854  4666665444  4 77777


Q ss_pred             EeeCC
Q 039619          337 EIYGC  341 (459)
Q Consensus       337 ~i~~c  341 (459)
                      ++.+.
T Consensus       351 ~l~~n  355 (401)
T 4fdw_A          351 KVEGT  355 (401)
T ss_dssp             EECCS
T ss_pred             EEcCC
Confidence            77664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.61  E-value=2.7e-06  Score=84.15  Aligned_cols=205  Identities=12%  Similarity=0.144  Sum_probs=147.6

Q ss_pred             eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCcccc-ccCCCCCcccEEe
Q 039619          110 VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIA-EGLDDNTSLETME  186 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~  186 (459)
                      |+.+.+.+  .++.++... ..+.+|+.+++.+ +.++.++.. -.. .+|+.+.+..  +++.++ ..+..+++|+.+.
T Consensus       159 L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~-~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          159 VQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVY-AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTT-CCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred             ceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEee-cccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence            88888864  677776332 4457899999976 478888732 123 7899999974  577774 4577889999999


Q ss_pred             eccccCcccCccc-CCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEecCccc-----ccccccCCCCCCCCCccC
Q 039619          187 IFICQNLKALPNG-LRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDYEKIY-----KPLILERGPGLHRFTSVR  258 (459)
Q Consensus       187 l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~l~-----~~~~~~~~~~l~~l~~L~  258 (459)
                      +..  +++.++.. +.. .+|+.+.+.+  .++.++...+  +++|+.+.+.++.+.     ... .   ..+.++++|+
T Consensus       233 l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~---~aF~~c~~L~  303 (401)
T 4fdw_A          233 IPE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-P---YCLEGCPKLA  303 (401)
T ss_dssp             CCT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-T---TTTTTCTTCC
T ss_pred             cCC--CccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-H---HHhhCCccCC
Confidence            976  45666543 344 7899999953  5777776644  789999999884432     111 2   2788999999


Q ss_pred             EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCC---CCCCc
Q 039619          259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNG---LPTSL  333 (459)
Q Consensus       259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~---l~~sL  333 (459)
                      .+.+.+    .+..++...   ...+.+|+.+.+.+  +++.+.  .+.++ +|+.+++.++ .+..++...   ++.++
T Consensus       304 ~l~l~~----~i~~I~~~a---F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l  372 (401)
T 4fdw_A          304 RFEIPE----SIRILGQGL---LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDI  372 (401)
T ss_dssp             EECCCT----TCCEECTTT---TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred             eEEeCC----ceEEEhhhh---hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCc
Confidence            999986    577777654   13468999999964  688887  78888 9999999884 556666533   35678


Q ss_pred             ceEEeeC
Q 039619          334 LRLEIYG  340 (459)
Q Consensus       334 ~~L~i~~  340 (459)
                      +.|.+..
T Consensus       373 ~~l~vp~  379 (401)
T 4fdw_A          373 TVIRVPA  379 (401)
T ss_dssp             CEEEECG
T ss_pred             cEEEeCH
Confidence            8888865

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=5.3e-07  Score=86.80  Aligned_cols=189  Identities=12%  Similarity=0.029  Sum_probs=114.4

Q ss_pred             cccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeecccc---CcccCc-ccCCCC
Q 039619          131 PATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQ---NLKALP-NGLRNL  203 (459)
Q Consensus       131 ~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~---~l~~lp-~~l~~l  203 (459)
                      +++|++|++.+  .++.++.  ...+ ++|+.|++.+. .+..++ ..+..+.++..+......   ....+. ..+..+
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~aF~~~-~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAAFKGC-DNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTTTTTC-TTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cCCCcEEECCc--cccchhHHHhhcC-cccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence            46888888876  6777762  3556 78888888873 444553 345555555555443210   000110 011122


Q ss_pred             CC--------------------------ccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCc
Q 039619          204 TS--------------------------LQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTS  256 (459)
Q Consensus       204 ~~--------------------------L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  256 (459)
                      .+                          ++.+.+.+.-.-..+... ..+++|+++++.+++++... ..   .+.++++
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-~~---aF~~~~~  251 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-DF---TFAQKKY  251 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-TT---TTTTCTT
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-Hh---hhhCCCC
Confidence            22                          333333221000000000 12678999999886666433 33   7889999


Q ss_pred             cCEEEEeCCcCCCceecCCCCCCCccCCCCcc-eEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CC
Q 039619          257 VRLLTLFGGECCGVVSFPPEKDTGKALPASLK-HLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PT  331 (459)
Q Consensus       257 L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~  331 (459)
                      |++|++.+    ++..++...   +..+.+|+ .+.+.+  +++.++  .+.++++|+.+++.+ ++++.++...+  ++
T Consensus       252 L~~l~l~~----ni~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~  321 (329)
T 3sb4_A          252 LLKIKLPH----NLKTIGQRV---FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGV  321 (329)
T ss_dssp             CCEEECCT----TCCEECTTT---TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTC
T ss_pred             CCEEECCc----ccceehHHH---hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCc
Confidence            99999987    377777653   23567898 999986  788887  788899999999876 57888887555  56


Q ss_pred             CcceEE
Q 039619          332 SLLRLE  337 (459)
Q Consensus       332 sL~~L~  337 (459)
                      +|+.++
T Consensus       322 ~L~~ly  327 (329)
T 3sb4_A          322 PSKLIY  327 (329)
T ss_dssp             CCCEEE
T ss_pred             chhhhc
Confidence            677665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.54  E-value=1.2e-09  Score=97.31  Aligned_cols=113  Identities=12%  Similarity=0.146  Sum_probs=56.7

Q ss_pred             CccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccC
Q 039619          121 LTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGL  200 (459)
Q Consensus       121 l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l  200 (459)
                      ++.+|.....+++|++|+++++ .++.+|....+ ++|++|+++++ .+..+|..+..+++|++|++++| .+..+| .+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l-~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~  111 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTN-NIEKISSLSGM-ENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GI  111 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHH-TTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HH
T ss_pred             HhhhhHHHhcCCCCCEEECCCC-CCccccccccC-CCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-cc
Confidence            4444433333446666666653 44555533445 56666666664 34455554555566666666665 444444 34


Q ss_pred             CCCCCccEEeeccCCCCccccC---CCCCCCccEEEEecCcc
Q 039619          201 RNLTSLQYLLIQDCPTIGSFTA---NCFPTNLASVCIDYEKI  239 (459)
Q Consensus       201 ~~l~~L~~L~l~~c~~l~~lp~---~~~~~~L~~L~l~~~~l  239 (459)
                      ..+++|+.|+++++ .+..++.   ...+++|++|++++|.+
T Consensus       112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            45556666666553 2333322   12344444444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=3.1e-10  Score=101.23  Aligned_cols=42  Identities=12%  Similarity=0.231  Sum_probs=19.9

Q ss_pred             cccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccC
Q 039619          171 SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDC  214 (459)
Q Consensus       171 ~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  214 (459)
                      .+|..+..+++|++|+++++ .+..+| .+..+++|+.|++++|
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN   80 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE
T ss_pred             hhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC
Confidence            33334444555555555544 333344 4444555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.52  E-value=5e-07  Score=78.56  Aligned_cols=99  Identities=17%  Similarity=0.217  Sum_probs=63.0

Q ss_pred             cEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCC
Q 039619          207 QYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS  286 (459)
Q Consensus       207 ~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~  286 (459)
                      +.+++++ ..++.+|. .++++|++|+++++.++... +.   .+.++++|++|++++   +.+..+|...   ...+++
T Consensus        15 ~~l~~~~-n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~i~~~~---~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPA-GIPTDKQRLWLNNNQITKLE-PG---VFDHLVNLQQLYFNS---NKLTAIPTGV---FDKLTQ   82 (174)
T ss_dssp             SEEECCS-SCCSSCCS-CCCTTCSEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTT
T ss_pred             cEEEeCC-CCCCccCC-CcCCCCcEEEeCCCCccccC-HH---HhcCCcCCCEEECCC---CCCCccChhH---hCCcch
Confidence            3444444 23445543 23456666666665555433 33   567888888888887   4677777643   024677


Q ss_pred             cceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          287 LKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       287 L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                      |++|++++ +.++.++  .+..+++|++|+++++
T Consensus        83 L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           83 LTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             hhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence            88888887 6777777  3777788888888774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.47  E-value=7.1e-07  Score=77.24  Aligned_cols=99  Identities=19%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             cEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCC
Q 039619          207 QYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS  286 (459)
Q Consensus       207 ~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~  286 (459)
                      +.+++++ ..++.+|. ..+++|++|++++|.++... +.   .+..+++|++|++++   +.+..++...   ...+++
T Consensus        12 ~~l~~s~-n~l~~ip~-~~~~~l~~L~L~~N~i~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~l~~~~---f~~l~~   79 (170)
T 3g39_A           12 TTVDCSG-KSLASVPT-GIPTTTQVLYLYDNQITKLE-PG---VFDRLTQLTRLDLDN---NQLTVLPAGV---FDKLTQ   79 (170)
T ss_dssp             TEEECTT-SCCSSCCS-CCCTTCSEEECCSSCCCCCC-TT---TTTTCTTCSEEECCS---SCCCCCCTTT---TTTCTT
T ss_pred             CEEEeCC-CCcCccCc-cCCCCCcEEEcCCCcCCccC-hh---hhcCcccCCEEECCC---CCcCccChhh---ccCCCC
Confidence            4455544 23444443 23455666666665555433 33   567788888888887   4666666543   024667


Q ss_pred             cceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          287 LKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       287 L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                      |++|++++ +.++.++  .+..+++|++|+++++
T Consensus        80 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           80 LTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence            77777777 6777776  4677777788877774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.42  E-value=1.1e-06  Score=76.00  Aligned_cols=14  Identities=14%  Similarity=0.297  Sum_probs=8.0

Q ss_pred             CCCCCccCEEEEeC
Q 039619          251 LHRFTSVRLLTLFG  264 (459)
Q Consensus       251 l~~l~~L~~L~l~~  264 (459)
                      +..+++|+.|++++
T Consensus        98 ~~~l~~L~~L~L~~  111 (170)
T 3g39_A           98 FDNLKSLTHIWLLN  111 (170)
T ss_dssp             TTTCTTCCEEECCS
T ss_pred             hcCCCCCCEEEeCC
Confidence            45555556666555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.39  E-value=1.3e-06  Score=75.82  Aligned_cols=14  Identities=14%  Similarity=0.408  Sum_probs=7.7

Q ss_pred             CCCCCccCEEEEeC
Q 039619          251 LHRFTSVRLLTLFG  264 (459)
Q Consensus       251 l~~l~~L~~L~l~~  264 (459)
                      +..+++|+.|++++
T Consensus       101 ~~~l~~L~~L~L~~  114 (174)
T 2r9u_A          101 FDNLKSLTHIYLYN  114 (174)
T ss_dssp             TTTCTTCSEEECCS
T ss_pred             hccccCCCEEEeCC
Confidence            44555555555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.18  E-value=3.7e-06  Score=81.40  Aligned_cols=98  Identities=20%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             eEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEec
Q 039619          160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDY  236 (459)
Q Consensus       160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~  236 (459)
                      .++.++.+.++.+|. +..+++|++|+|++++.+..+| ..+..+++|+.|+|+++ .+..++..  ..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence            345555336777887 8888888888888644676666 45778888888888775 56666543  3366777777777


Q ss_pred             CcccccccccCCCCCCCCCccCEEEEeC
Q 039619          237 EKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      |+++... +.   .+..++ |+.|++.+
T Consensus        90 N~l~~~~-~~---~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           90 NALESLS-WK---TVQGLS-LQELVLSG  112 (347)
T ss_dssp             SCCSCCC-ST---TTCSCC-CCEEECCS
T ss_pred             CccceeC-HH---HcccCC-ceEEEeeC
Confidence            6665432 22   233333 77777766

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=7.5e-07  Score=76.92  Aligned_cols=68  Identities=15%  Similarity=0.250  Sum_probs=41.2

Q ss_pred             CCCCCCccCEEEEeCCcCCCcee-----cCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCC
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVS-----FPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQ  322 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~-----l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~  322 (459)
                      .+..+++|++|++++  |..++.     +....    ...++|++|++++|.++++-.  .+..+++|++|++++|+.++
T Consensus        80 ~L~~~~~L~~L~L~~--C~~ItD~gL~~L~~~~----~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           80 HMEGLQYVEKIRLCK--CHYIEDGCLERLSQLE----NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GGTTCSCCCEEEEES--CTTCCHHHHHHHHTCH----HHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HhcCCCCCCEEEeCC--CCccCHHHHHHHHhcc----cccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            456778888888888  765432     22100    002357777777777776544  44556667777777766655


Q ss_pred             c
Q 039619          323 K  323 (459)
Q Consensus       323 ~  323 (459)
                      .
T Consensus       154 d  154 (176)
T 3e4g_A          154 E  154 (176)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.09  E-value=0.00067  Score=66.67  Aligned_cols=119  Identities=18%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             CCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCC
Q 039619          201 RNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKD  278 (459)
Q Consensus       201 ~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~  278 (459)
                      ..+..|+.+.+..  ....+...  .....++.+......+..       ..+..+.+|+.+.+..    .+..++... 
T Consensus       250 ~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~----~i~~I~~~a-  315 (394)
T 4fs7_A          250 YGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD----SVKFIGEEA-  315 (394)
T ss_dssp             TTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECT----TCCEECTTT-
T ss_pred             cccccceeEEcCC--CcceeeccccccccccceeccCceeecc-------cccccccccccccccc----ccceechhh-
Confidence            4455566655543  12233322  124455555544332221       1456677788777765    455565532 


Q ss_pred             CCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEee
Q 039619          279 TGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIY  339 (459)
Q Consensus       279 ~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~  339 (459)
                        ...+.+|+.+++.  +.++.++  .+.++++|+.+.+..  .++.++...+  +.+|+.+++.
T Consensus       316 --F~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          316 --FESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             --TTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             --hcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence              1245678888876  3577776  677788888888854  3667766544  5677777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.08  E-value=9.5e-06  Score=78.43  Aligned_cols=98  Identities=22%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             EEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeeccc
Q 039619          114 QIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFIC  190 (459)
Q Consensus       114 ~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c  190 (459)
                      +.++.+.++.+|. +..+++|++|+|++.+.++.++.  ...+ ++|++|+|+++ .+..++ ..+..+++|+.|+|+++
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l-~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccc-cCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence            3344225677775 55556788888876567777763  3566 77888888774 566664 35677788888888775


Q ss_pred             cCcccCcccCCCCCCccEEeeccCC
Q 039619          191 QNLKALPNGLRNLTSLQYLLIQDCP  215 (459)
Q Consensus       191 ~~l~~lp~~l~~l~~L~~L~l~~c~  215 (459)
                       .+..+|..+.....|+.|++.+++
T Consensus        91 -~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 -ALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             -CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             -ccceeCHHHcccCCceEEEeeCCC
Confidence             566666544333337777776643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.91  E-value=5e-06  Score=80.96  Aligned_cols=9  Identities=11%  Similarity=0.128  Sum_probs=5.3

Q ss_pred             cccceEEee
Q 039619          156 KALKHLYII  164 (459)
Q Consensus       156 ~~L~~L~l~  164 (459)
                      ++|+.|.+.
T Consensus       139 ~~L~~L~l~  147 (362)
T 2ra8_A          139 AHFEGLFWG  147 (362)
T ss_dssp             TTCSEEEEC
T ss_pred             chhhheeec
Confidence            566666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.85  E-value=6.9e-06  Score=70.85  Aligned_cols=18  Identities=39%  Similarity=0.580  Sum_probs=9.7

Q ss_pred             CCCCCccCEEEEeCCcCCCc
Q 039619          251 LHRFTSVRLLTLFGGECCGV  270 (459)
Q Consensus       251 l~~l~~L~~L~l~~~~c~~l  270 (459)
                      +..+++|++|++++  |..+
T Consensus       135 L~~~~~L~~L~L~~--c~~I  152 (176)
T 3e4g_A          135 LHHFRNLKYLFLSD--LPGV  152 (176)
T ss_dssp             GGGCTTCCEEEEES--CTTC
T ss_pred             HhcCCCCCEEECCC--CCCC
Confidence            34455566666655  5544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.80  E-value=1.2e-05  Score=78.33  Aligned_cols=12  Identities=17%  Similarity=0.061  Sum_probs=7.3

Q ss_pred             CCCcceEEeecC
Q 039619          284 PASLKHLSIWNF  295 (459)
Q Consensus       284 ~~~L~~L~l~~c  295 (459)
                      +++|+.|++++|
T Consensus       306 l~~L~~L~L~~n  317 (362)
T 2ra8_A          306 IKHLKFINMKYN  317 (362)
T ss_dssp             HTTCSEEECCSB
T ss_pred             CCcceEEECCCC
Confidence            456666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.55  E-value=0.0057  Score=59.89  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=62.9

Q ss_pred             CCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--C
Q 039619          226 PTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--S  303 (459)
Q Consensus       226 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~  303 (459)
                      +.+|+.+.+.++...-.  .   ..+.++++|+.+.+..    .+..++...   ...+.+|+.+.+.+  +++.+.  .
T Consensus       264 c~~L~~i~lp~~~~~I~--~---~aF~~c~~L~~i~l~~----~i~~I~~~a---F~~c~~L~~i~lp~--~v~~I~~~a  329 (394)
T 4gt6_A          264 CAYLASVKMPDSVVSIG--T---GAFMNCPALQDIEFSS----RITELPESV---FAGCISLKSIDIPE--GITQILDDA  329 (394)
T ss_dssp             CSSCCEEECCTTCCEEC--T---TTTTTCTTCCEEECCT----TCCEECTTT---TTTCTTCCEEECCT--TCCEECTTT
T ss_pred             cccccEEecccccceec--C---cccccccccccccCCC----cccccCcee---ecCCCCcCEEEeCC--cccEehHhH
Confidence            45666666654211100  1   2566777888877754    566666543   12456788888863  577776  6


Q ss_pred             CCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          304 IENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       304 l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      +.++.+|+.+.+..  .++.++...+  +.+|+.+++.+..
T Consensus       330 F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          330 FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence            77788888888853  4677766444  5778888776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.52  E-value=2.1e-06  Score=84.17  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=20.2

Q ss_pred             CCCcceEEeecCCCCCccC------CCCCCCCCCEEeccCC
Q 039619          284 PASLKHLSIWNFPNLERIS------SIENLTSFESLQLCCC  318 (459)
Q Consensus       284 ~~~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c  318 (459)
                      +++|++|++++ +.++...      .+...++|++|++++|
T Consensus       210 ~~~L~~L~Ls~-N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          210 NRQLQELNVAY-NGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CSCCCEEECCS-SCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CCCcCeEECCC-CCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            34677777776 4554322      2334567777777775

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.44  E-value=6.6e-06  Score=80.56  Aligned_cols=15  Identities=27%  Similarity=0.388  Sum_probs=8.7

Q ss_pred             CCcceEEeecCCCCCc
Q 039619          285 ASLKHLSIWNFPNLER  300 (459)
Q Consensus       285 ~~L~~L~l~~c~~l~~  300 (459)
                      ++|++|++++ +.++.
T Consensus       239 ~~L~~L~Ls~-N~i~~  253 (372)
T 3un9_A          239 PSLELLHLYF-NELSS  253 (372)
T ss_dssp             SSCCEEECTT-SSCCH
T ss_pred             CCCCEEeccC-CCCCH
Confidence            4566666666 44543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.99  E-value=0.027  Score=54.98  Aligned_cols=138  Identities=14%  Similarity=0.074  Sum_probs=84.3

Q ss_pred             cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCC--CCCCCccE
Q 039619          156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLAS  231 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~  231 (459)
                      .+|+.+.+..  .+..+. ..+..+.+|+.+.+...  ...+ ...+..+..++.+.....    .++..  ..+.+|+.
T Consensus       230 ~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~  301 (394)
T 4fs7_A          230 TGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTE  301 (394)
T ss_dssp             CCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCE
T ss_pred             CCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eeccccccccccccc
Confidence            5666666653  334442 33556677777777543  2222 234456667777665431    23332  22567777


Q ss_pred             EEEec--CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC
Q 039619          232 VCIDY--EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL  307 (459)
Q Consensus       232 L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l  307 (459)
                      +.+.+  ..+.    .   .++.++++|+.+++..    .++.++...   ...+.+|+.+.+..  +++.++  .+.++
T Consensus       302 i~l~~~i~~I~----~---~aF~~c~~L~~i~lp~----~v~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~~aF~~C  365 (394)
T 4fs7_A          302 VKLLDSVKFIG----E---EAFESCTSLVSIDLPY----LVEEIGKRS---FRGCTSLSNINFPL--SLRKIGANAFQGC  365 (394)
T ss_dssp             EEECTTCCEEC----T---TTTTTCTTCCEECCCT----TCCEECTTT---TTTCTTCCEECCCT--TCCEECTTTBTTC
T ss_pred             cccccccceec----h---hhhcCCCCCCEEEeCC----cccEEhHHh---ccCCCCCCEEEECc--cccEehHHHhhCC
Confidence            77765  2232    1   2678888999888865    466666543   12467888888864  477777  77788


Q ss_pred             CCCCEEeccC
Q 039619          308 TSFESLQLCC  317 (459)
Q Consensus       308 ~~L~~L~l~~  317 (459)
                      ++|+.+++..
T Consensus       366 ~~L~~i~lp~  375 (394)
T 4fs7_A          366 INLKKVELPK  375 (394)
T ss_dssp             TTCCEEEEEG
T ss_pred             CCCCEEEECC
Confidence            8888888854

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.97  E-value=0.13  Score=49.74  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEecc
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLC  316 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~  316 (459)
                      .+.++.+|+.+.+..    .+..++...   ...+.+|+.+.+.+ +.++.++  .+.++.+|+.+.+.
T Consensus       258 aF~~~~~l~~i~l~~----~i~~i~~~a---F~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          258 LLQNCTALKTLNFYA----KVKTVPYLL---CSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTCTTCCEEEECC----CCSEECTTT---TTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceeehhccccccc----cceeccccc---cccccccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence            345555566655543    344444322   11345566665554 4455555  45555566665553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.86  E-value=0.014  Score=57.05  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCC
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDN  327 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~  327 (459)
                      .+.++.+|+.+.+..    .+..+....   .....+|+.+.+.  +.++.++  .+.++.+|+.+.+.+  .++.+...
T Consensus       260 aF~~c~~L~~i~lp~----~~~~I~~~a---F~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~  328 (394)
T 4gt6_A          260 AFDSCAYLASVKMPD----SVVSIGTGA---FMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDD  328 (394)
T ss_dssp             TTTTCSSCCEEECCT----TCCEECTTT---TTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTT
T ss_pred             eeeecccccEEeccc----ccceecCcc---cccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHh
Confidence            456677777777755    333444322   1245677777775  4667776  667777888887753  46666654


Q ss_pred             CC--CCCcceEEe
Q 039619          328 GL--PTSLLRLEI  338 (459)
Q Consensus       328 ~l--~~sL~~L~i  338 (459)
                      .+  +.+|+.+.+
T Consensus       329 aF~~C~~L~~i~i  341 (394)
T 4gt6_A          329 AFAGCEQLERIAI  341 (394)
T ss_dssp             TTTTCTTCCEEEE
T ss_pred             HhhCCCCCCEEEE
Confidence            44  456666666

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.12  E-value=0.84  Score=43.82  Aligned_cols=96  Identities=9%  Similarity=0.104  Sum_probs=62.9

Q ss_pred             CCCccEEEEec--CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-
Q 039619          226 PTNLASVCIDY--EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-  302 (459)
Q Consensus       226 ~~~L~~L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-  302 (459)
                      ..+|+.+.+..  ..+.    .   ..+.++..|+.+.+..    .+..+....   .....+|+.+.+.  .+++.++ 
T Consensus       216 ~~~l~~i~~~~~~~~i~----~---~~f~~~~~L~~i~lp~----~v~~I~~~a---F~~~~~l~~i~l~--~~i~~i~~  279 (379)
T 4h09_A          216 GKNLKKITITSGVTTLG----D---GAFYGMKALDEIAIPK----NVTSIGSFL---LQNCTALKTLNFY--AKVKTVPY  279 (379)
T ss_dssp             CSSCSEEECCTTCCEEC----T---TTTTTCSSCCEEEECT----TCCEECTTT---TTTCTTCCEEEEC--CCCSEECT
T ss_pred             ccccceeeeccceeEEc----c---ccccCCccceEEEcCC----CccEeCccc---cceeehhcccccc--ccceeccc
Confidence            45666666654  2221    1   1567788888888866    456665533   1245678888886  4677777 


Q ss_pred             -CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEe
Q 039619          303 -SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEI  338 (459)
Q Consensus       303 -~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i  338 (459)
                       .+..+++|+.+.+.+ ..++.++...+  +.+|+.+.+
T Consensus       280 ~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccc-cccceehhhhhcCCCCCCEEEc
Confidence             677889999998865 35777776544  466777666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.26  E-value=0.0072  Score=55.73  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             cccceEEeecccCCccc---cccCCCCCcccEEeeccccCcccCcccCCCCC--CccEEeeccCC
Q 039619          156 KALKHLYIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGLRNLT--SLQYLLIQDCP  215 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~--~L~~L~l~~c~  215 (459)
                      ++|+.|+|+++ .+..+   |..+..+++|+.|+|+++ .+..+ ..+..+.  +|++|++++++
T Consensus       170 ~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          170 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             TTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred             CCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCc
Confidence            45555555553 33332   233334555555555554 33332 1122222  55555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.20  E-value=0.0063  Score=56.11  Aligned_cols=41  Identities=15%  Similarity=0.122  Sum_probs=22.3

Q ss_pred             CCCcccEEeeccccCcccC---cccCCCCCCccEEeeccCCCCccc
Q 039619          178 DNTSLETMEIFICQNLKAL---PNGLRNLTSLQYLLIQDCPTIGSF  220 (459)
Q Consensus       178 ~l~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~l  220 (459)
                      ++++|+.|+++++ .+..+   |..+..+++|+.|+|+++ .+..+
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~  211 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE  211 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc
Confidence            3566777777765 34333   233345666666666553 34433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.00  E-value=0.0037  Score=54.34  Aligned_cols=12  Identities=25%  Similarity=0.235  Sum_probs=5.7

Q ss_pred             CCcccEEeeccc
Q 039619          179 NTSLETMEIFIC  190 (459)
Q Consensus       179 l~~L~~L~l~~c  190 (459)
                      .++|++|++++|
T Consensus        64 ~~~L~~L~Ls~n   75 (185)
T 1io0_A           64 NTYVKKFSIVGT   75 (185)
T ss_dssp             CCSCCEEECTTS
T ss_pred             CCCcCEEECcCC
Confidence            344445554444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.96  E-value=0.0034  Score=54.53  Aligned_cols=54  Identities=28%  Similarity=0.295  Sum_probs=28.7

Q ss_pred             cccceEEeecccCCcc-----ccccCCCCCcccEEeeccccCcc-----cCcccCCCCCCccEEee
Q 039619          156 KALKHLYIISCSNLES-----IAEGLDDNTSLETMEIFICQNLK-----ALPNGLRNLTSLQYLLI  211 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l  211 (459)
                      ++|++|++++|. +..     +...+...++|++|++++| .+.     .+...+...++|++|++
T Consensus        65 ~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           65 TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEe
Confidence            566666666653 322     2233334466777777665 232     13334455566666666

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.12  E-value=0.091  Score=42.53  Aligned_cols=45  Identities=22%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             CCce--ecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619          268 CGVV--SFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP  319 (459)
Q Consensus       268 ~~l~--~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~  319 (459)
                      .+++  .+|..      .+.+|+.|+|++ |.++.++  .+..+++|++|++.+++
T Consensus        18 ~~L~~~~vP~~------lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           18 RGLTWASLPTA------FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             SCCCTTTSCSC------CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCccccCCCC------CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            3455  66653      456777777777 7777777  45666777777776643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.04  E-value=0.76  Score=36.95  Aligned_cols=50  Identities=16%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             eEEeecCCCCC--ccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          289 HLSIWNFPNLE--RIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       289 ~L~l~~c~~l~--~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      .++.++ ++++  .+| .+.  ++|++|++++ ++|+.++...+  +++|+.|++.++|
T Consensus        12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            455565 6777  787 443  5799999998 68999997554  6799999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	459
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 15/196 (7%)

Query: 141 RCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETMEIFICQNLKALPNG 199
           +CS L    +  +L      L +   + +  I +G   +  +L T+ +   +  K  P  
Sbjct: 16  QCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 200 LRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRL 259
              L  L+ L +              P  +     +       +   R    +    + +
Sbjct: 75  FAPLVKLERLYLSKNQL------KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 260 LTLFGGECCGVVSFPPEKDTGKALPA------SLKHLSIWNFPNLERIS-SIENLTSFES 312
           + L                  K L        ++  +     P+L  +      +T  ++
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 188

Query: 313 LQLCCCPKLQKFPDNG 328
             L     L K   + 
Sbjct: 189 ASLKGLNNLAKLGLSF 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	459
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.65
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.65
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.48
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.91
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.88
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.79
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.77
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.81
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	86.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	81.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	80.31

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.9e-15  Score=144.57  Aligned_cols=169  Identities=20%  Similarity=0.192  Sum_probs=106.1

Q ss_pred             cccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccE
Q 039619          152 GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLAS  231 (459)
Q Consensus       152 ~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~  231 (459)
                      ..+ ++++.++++++ .+..++. ...+++|++|+++++ .++.++ .+..+++|+.|++++|. +..++....+++|++
T Consensus       194 ~~l-~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~  267 (384)
T d2omza2         194 AKL-TNLESLIATNN-QISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTE  267 (384)
T ss_dssp             GGC-TTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred             ccc-cccceeeccCC-ccCCCCc-ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCCcccccccCCE
Confidence            445 67777777764 4444432 345677778887776 455553 45677777888777753 555555555677788


Q ss_pred             EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCC
Q 039619          232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFE  311 (459)
Q Consensus       232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~  311 (459)
                      |+++++.+....      .+..++.++.+.+..   +.+..++..     ..+++++.|++++ ++++.++.+..+++|+
T Consensus       268 L~l~~~~l~~~~------~~~~~~~l~~l~~~~---n~l~~~~~~-----~~~~~l~~L~ls~-n~l~~l~~l~~l~~L~  332 (384)
T d2omza2         268 LKLGANQISNIS------PLAGLTALTNLELNE---NQLEDISPI-----SNLKNLTYLTLYF-NNISDISPVSSLTKLQ  332 (384)
T ss_dssp             EECCSSCCCCCG------GGTTCTTCSEEECCS---SCCSCCGGG-----GGCTTCSEEECCS-SCCSCCGGGGGCTTCC
T ss_pred             eeccCcccCCCC------ccccccccccccccc---ccccccccc-----chhcccCeEECCC-CCCCCCcccccCCCCC
Confidence            887776665433      446677777777766   234333322     1556777777776 5666665566677777


Q ss_pred             EEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619          312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP  342 (459)
Q Consensus       312 ~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~  342 (459)
                      +|++++| +++.++.-.-+++|++|++++|.
T Consensus       333 ~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         333 RLFFANN-KVSDVSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             EEECCSS-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCC-CCCCChhHcCCCCCCEEECCCCc
Confidence            7777776 56666542225677777777663

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.65  E-value=1.4e-16  Score=151.21  Aligned_cols=238  Identities=13%  Similarity=0.105  Sum_probs=165.4

Q ss_pred             CcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCc-cccCCccccccCcEEEeecCCCceeec--ccccccccc
Q 039619           90 TLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLT-SLWSKSELPATLENIYVDRCSKLAFLS--LRGNLSKAL  158 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~-~lp~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L  158 (459)
                      ++++|+++++.- .....+|        |++|+|++|+.+. .+|+.+..+++|++|+++++ .+..++  ....+ .+|
T Consensus        51 ~v~~L~L~~~~l-~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~-~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQI-KTL  127 (313)
T ss_dssp             CEEEEEEECCCC-SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGC-TTC
T ss_pred             EEEEEECCCCCC-CCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccc-cccccccccccch-hhh
Confidence            678888887511 1111344        8999998766665 78877777789999999885 455443  23455 788


Q ss_pred             ceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCc-cEEeeccCCCCccc-cCCCCCCCccEEEEec
Q 039619          159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSL-QYLLIQDCPTIGSF-TANCFPTNLASVCIDY  236 (459)
Q Consensus       159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L-~~L~l~~c~~l~~l-p~~~~~~~L~~L~l~~  236 (459)
                      +.++++.+.....+|..+..+++|+.++++++.....+|..+..+.++ +.+.++++ .+... +.......+..+++.+
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~~l~l~~  206 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            999998877777778888889999999998886555778777777765 66777654 34333 2221122344677766


Q ss_pred             CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-ccC-CCCCCCCCCEEe
Q 039619          237 EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-RIS-SIENLTSFESLQ  314 (459)
Q Consensus       237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~l~~L~~L~  314 (459)
                      +...... +.   .+..+++|+.+++.+  +.....++ ..    ..+++|+.|++++ ++++ .+| ++.++++|++|+
T Consensus       207 ~~~~~~~-~~---~~~~~~~l~~l~~~~--~~l~~~~~-~~----~~~~~L~~L~Ls~-N~l~g~iP~~l~~L~~L~~L~  274 (313)
T d1ogqa_         207 NMLEGDA-SV---LFGSDKNTQKIHLAK--NSLAFDLG-KV----GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             SEEEECC-GG---GCCTTSCCSEEECCS--SEECCBGG-GC----CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEE
T ss_pred             ccccccc-cc---ccccccccccccccc--cccccccc-cc----ccccccccccCcc-CeecccCChHHhCCCCCCEEE
Confidence            5554443 44   567889999999988  43333333 33    2678999999998 6776 788 889999999999


Q ss_pred             ccCCCCCC-cCCCCCCCCCcceEEeeCCchh
Q 039619          315 LCCCPKLQ-KFPDNGLPTSLLRLEIYGCPLI  344 (459)
Q Consensus       315 l~~c~~l~-~lp~~~l~~sL~~L~i~~c~~L  344 (459)
                      ++++ +++ .+|..+-+++|+.+++.+++.|
T Consensus       275 Ls~N-~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         275 VSFN-NLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             CcCC-cccccCCCcccCCCCCHHHhCCCccc
Confidence            9985 455 7887544678888888887654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.6e-15  Score=143.99  Aligned_cols=270  Identities=16%  Similarity=0.159  Sum_probs=136.9

Q ss_pred             CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619           23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC  102 (459)
Q Consensus        23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l  102 (459)
                      .+.+|++|++.++...+ .  .++..+++|++|.++++..- .               ......++ +|++|++++|+  
T Consensus        42 ~l~~l~~L~l~~~~I~~-l--~gl~~L~nL~~L~Ls~N~l~-~---------------l~~l~~L~-~L~~L~L~~n~--   99 (384)
T d2omza2          42 DLDQVTTLQADRLGIKS-I--DGVEYLNNLTQINFSNNQLT-D---------------ITPLKNLT-KLVDILMNNNQ--   99 (384)
T ss_dssp             HHTTCCEEECCSSCCCC-C--TTGGGCTTCCEEECCSSCCC-C---------------CGGGTTCT-TCCEEECCSSC--
T ss_pred             HhCCCCEEECCCCCCCC-c--cccccCCCCCEEeCcCCcCC-C---------------CccccCCc-ccccccccccc--
Confidence            46788888887764422 2  24567888888888876421 0               11123444 88888888863  


Q ss_pred             CCCCccc-------eeEEEEecCCCCccccCCc-----------------------------------------------
Q 039619          103 YEPLTIP-------VYQLQIIPCPSLTSLWSKS-----------------------------------------------  128 (459)
Q Consensus       103 ~~l~~lp-------L~~L~l~~c~~l~~lp~~~-----------------------------------------------  128 (459)
                        +..++       |+.|++.++ .++.++...                                               
T Consensus       100 --i~~i~~l~~l~~L~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (384)
T d2omza2         100 --IADITPLANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT  176 (384)
T ss_dssp             --CCCCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTT
T ss_pred             --ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence              33333       888887653 333222111                                               


Q ss_pred             -----------------cccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecccc
Q 039619          129 -----------------ELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQ  191 (459)
Q Consensus       129 -----------------~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  191 (459)
                                       ..+++++.++++++ .+..++..... ++|++|+++++ .++.++ .+..+++|+.|+++++ 
T Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n-~i~~~~~~~~~-~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-  251 (384)
T d2omza2         177 LERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITPLGIL-TNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANN-  251 (384)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGGC-TTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-
T ss_pred             cccccccccccccccccccccccceeeccCC-ccCCCCccccc-CCCCEEECCCC-CCCCcc-hhhcccccchhccccC-
Confidence                             11123444444432 23333322333 55666666554 344443 3445556666666555 


Q ss_pred             CcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCce
Q 039619          192 NLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVV  271 (459)
Q Consensus       192 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~  271 (459)
                      .+..++ .+..+++|++|+++++ .+..++.....+.++.+.+..+.+....      .+..+++++.|++++   +.+.
T Consensus       252 ~l~~~~-~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l~~~~------~~~~~~~l~~L~ls~---n~l~  320 (384)
T d2omza2         252 QISNLA-PLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYF---NNIS  320 (384)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCS---SCCS
T ss_pred             ccCCCC-cccccccCCEeeccCc-ccCCCCcccccccccccccccccccccc------ccchhcccCeEECCC---CCCC
Confidence            333433 2445556666666543 3334433333455555555555544332      344555666666655   2333


Q ss_pred             ecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeC
Q 039619          272 SFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYG  340 (459)
Q Consensus       272 ~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~  340 (459)
                      .++. +    ..+++|++|++++ +.++.++.+..+++|++|++++| +++.++.-.-+++|+.|++++
T Consensus       321 ~l~~-l----~~l~~L~~L~L~~-n~l~~l~~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         321 DISP-V----SSLTKLQRLFFAN-NKVSDVSSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CCGG-G----GGCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred             CCcc-c----ccCCCCCEEECCC-CCCCCChhHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCC
Confidence            3332 1    1445566666665 35555554555566666666553 455544312235555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=2.6e-14  Score=134.56  Aligned_cols=234  Identities=15%  Similarity=0.189  Sum_probs=170.9

Q ss_pred             CCCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeeccccccc
Q 039619           86 PVSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLSLRGNLS  155 (459)
Q Consensus        86 ~lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp  155 (459)
                      .+|+++++|+++++    .++.+|         |++|+++++. +..+ |.....+++|++|+++++ .++.+|.. .. 
T Consensus        28 ~l~~~l~~L~Ls~N----~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~-~~-   99 (305)
T d1xkua_          28 DLPPDTALLDLQNN----KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MP-   99 (305)
T ss_dssp             SCCTTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CC-
T ss_pred             CCCCCCCEEECcCC----cCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEecccCC-ccCcCccc-hh-
Confidence            45778999999995    455444         9999998855 4455 434556679999999885 68888743 23 


Q ss_pred             cccceEEeecccCCccccc-cCCCCCcccEEeeccccCc--ccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEE
Q 039619          156 KALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNL--KALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASV  232 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L  232 (459)
                      ..++.|++.++ .+..++. .+.....+..+....+...  ...+..+..+++|+.+++.+| .+..++. ..+++|++|
T Consensus       100 ~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~-~~~~~L~~L  176 (305)
T d1xkua_         100 KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ-GLPPSLTEL  176 (305)
T ss_dssp             TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS-SCCTTCSEE
T ss_pred             hhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCc-ccCCccCEE
Confidence            68888888874 4555532 2445567777777665322  122345667889999999876 4566654 357899999


Q ss_pred             EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCC
Q 039619          233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFE  311 (459)
Q Consensus       233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~  311 (459)
                      +++++...... +.   .+..++.++.|++++   +.+..++...   ...+++|++|++++ ++++.+| ++..+++|+
T Consensus       177 ~l~~n~~~~~~-~~---~~~~~~~l~~L~~s~---n~l~~~~~~~---~~~l~~L~~L~L~~-N~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         177 HLDGNKITKVD-AA---SLKGLNNLAKLGLSF---NSISAVDNGS---LANTPHLRELHLNN-NKLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             ECTTSCCCEEC-TG---GGTTCTTCCEEECCS---SCCCEECTTT---GGGSTTCCEEECCS-SCCSSCCTTTTTCSSCC
T ss_pred             ECCCCcCCCCC-hh---Hhhcccccccccccc---cccccccccc---ccccccceeeeccc-ccccccccccccccCCC
Confidence            99996655433 33   678899999999998   4677765543   13578999999999 6899999 899999999


Q ss_pred             EEeccCCCCCCcCCCCCC--------CCCcceEEeeCCc
Q 039619          312 SLQLCCCPKLQKFPDNGL--------PTSLLRLEIYGCP  342 (459)
Q Consensus       312 ~L~l~~c~~l~~lp~~~l--------~~sL~~L~i~~c~  342 (459)
                      +|+++++ +++.++...+        +.+|+.|+++++|
T Consensus       246 ~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         246 VVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            9999995 6888875322        5789999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-14  Score=133.65  Aligned_cols=181  Identities=23%  Similarity=0.235  Sum_probs=101.5

Q ss_pred             CCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCc
Q 039619          120 SLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP  197 (459)
Q Consensus       120 ~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp  197 (459)
                      .++.+|+.  +++++++|+|++ +.++.++.  ...+ ++|++|+++++ .++.++. +..+++|++|+++++ .+...+
T Consensus        21 ~L~~iP~~--lp~~l~~L~Ls~-N~i~~l~~~~f~~l-~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~   93 (266)
T d1p9ag_          21 NLTALPPD--LPKDTTILHLSE-NLLYTFSLATLMPY-TRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLP   93 (266)
T ss_dssp             CCSSCCSC--CCTTCCEEECTT-SCCSEEEGGGGTTC-TTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCC
T ss_pred             CCCeeCcC--cCcCCCEEECcC-CcCCCcCHHHhhcc-ccccccccccc-ccccccc-ccccccccccccccc-cccccc
Confidence            45555522  234566666655 34555542  2344 55555555553 4444442 344555555555554 344444


Q ss_pred             ccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCC
Q 039619          198 NGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEK  277 (459)
Q Consensus       198 ~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~  277 (459)
                      ..+..+++|+.|+++++. +..++                       ..   .+..+.++++|++++   +.+..++...
T Consensus        94 ~~~~~l~~L~~L~l~~~~-~~~~~-----------------------~~---~~~~l~~l~~L~l~~---n~l~~l~~~~  143 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNR-LTSLP-----------------------LG---ALRGLGELQELYLKG---NELKTLPPGL  143 (266)
T ss_dssp             CCTTTCTTCCEEECCSSC-CCCCC-----------------------SS---TTTTCTTCCEEECTT---SCCCCCCTTT
T ss_pred             cccccccccccccccccc-cceee-----------------------cc---ccccccccccccccc---cccceecccc
Confidence            444555555555554432 22222                       11   345666777777776   3555555543


Q ss_pred             CCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC-CCCcceEEeeCCc
Q 039619          278 DTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL-PTSLLRLEIYGCP  342 (459)
Q Consensus       278 ~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l-~~sL~~L~i~~c~  342 (459)
                      .   ..+++|+.|++++ ++++.++  .+..+++|++|+++++ +++++|...+ .++|+.|++++.|
T Consensus       144 ~---~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         144 L---TPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             T---TTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             c---cccccchhccccc-ccccccCccccccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            1   2356777777777 6677766  5677778888888774 5777776433 5678888887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.2e-14  Score=130.56  Aligned_cols=171  Identities=17%  Similarity=0.122  Sum_probs=114.2

Q ss_pred             eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  188 (459)
                      +++|+|++ +.++.++.. ...+++|++|+++++ .++.++..+.+ ++|++|+++++ .++.++..+..+++|+.|+++
T Consensus        33 l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          33 TTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTL-PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             CCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCC-TTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             CCEEECcC-CcCCCcCHHHhhccccccccccccc-ccccccccccc-ccccccccccc-ccccccccccccccccccccc
Confidence            77777766 567777632 345679999999985 78888877788 99999999985 677788888999999999999


Q ss_pred             cccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCC
Q 039619          189 ICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECC  268 (459)
Q Consensus       189 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~  268 (459)
                      ++......+..+..+.++++|.+.++ .+..++..                          .+..+++|+.|++++   +
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~--------------------------~~~~l~~l~~l~l~~---N  158 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPG--------------------------LLTPTPKLEKLSLAN---N  158 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT--------------------------TTTTCTTCCEEECTT---S
T ss_pred             ccccceeecccccccccccccccccc-ccceeccc--------------------------cccccccchhccccc---c
Confidence            98544434455677889999999875 56666543                          223444555555554   2


Q ss_pred             CceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCC
Q 039619          269 GVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCC  318 (459)
Q Consensus       269 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c  318 (459)
                      .+..++...   ...+++|++|++++ +.++.+| ++..+++|+.|+++++
T Consensus       159 ~l~~~~~~~---~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         159 NLTELPAGL---LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CCSCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cccccCccc---cccccccceeeccc-CCCcccChhHCCCCCCCEEEecCC
Confidence            344443321   01345555555555 4555555 5555566666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-13  Score=129.04  Aligned_cols=205  Identities=17%  Similarity=0.258  Sum_probs=134.9

Q ss_pred             CCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccC
Q 039619          120 SLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKAL  196 (459)
Q Consensus       120 ~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l  196 (459)
                      .++.+|.  ..++++++|+|++ +.++.+|.  ...+ ++|++|+++++ .+..++ ..+..+..++.+.+.....+..+
T Consensus        22 ~L~~iP~--~ip~~~~~L~Ls~-N~i~~i~~~~f~~l-~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l   96 (284)
T d1ozna_          22 GLQAVPV--GIPAASQRIFLHG-NRISHVPAASFRAC-RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (284)
T ss_dssp             CCSSCCT--TCCTTCSEEECTT-SCCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             CCCccCC--CCCCCCCEEECcC-CcCCCCCHHHhhcc-ccccccccccc-cccccccccccccccccccccccccccccc
Confidence            4666663  2456777777777 46777763  3556 77777777764 455443 34455677777777666666655


Q ss_pred             -cccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceec
Q 039619          197 -PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSF  273 (459)
Q Consensus       197 -p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l  273 (459)
                       +..+..+++|++|+++++. +..++..  ..+.+|+.+++.++.++... +.   .+..+++|++|++++   +.+..+
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~-~~---~f~~~~~L~~L~l~~---N~l~~l  168 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALP-DD---TFRDLGNLTHLFLHG---NRISSV  168 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCEE
T ss_pred             cchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccC-hh---Hhccccchhhccccc---Cccccc
Confidence             3456677788888887754 3333322  44677888888887776543 33   567788888888887   466666


Q ss_pred             CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          274 PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       274 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      +...   ...+++|+++.+++ +.+..++  .+..+++|++|+++++ .+..++...+  .++|++|++++.|
T Consensus       169 ~~~~---f~~l~~L~~l~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         169 PERA---FRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CTTT---TTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             chhh---hccccccchhhhhh-ccccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence            6543   12467888888887 5666664  7788888888888874 5666664222  5778888887743

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-13  Score=127.12  Aligned_cols=195  Identities=18%  Similarity=0.199  Sum_probs=146.0

Q ss_pred             eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccc-cccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L  185 (459)
                      +++|+|++ +.++.+|.. ...+++|++|++++ ..+..++.  ...+ +.++.+.+.....+..+ +..+..+++|++|
T Consensus        34 ~~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~ls~-n~l~~i~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          34 SQRIFLHG-NRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             CSEEECTT-SCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECcC-CcCCCCCHHHhhcccccccccccc-cccccccccccccc-ccccccccccccccccccchhhcccccCCEE
Confidence            66777766 467777743 34556899999987 46777662  2445 78888888777777777 5568889999999


Q ss_pred             eeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEe
Q 039619          186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLF  263 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~  263 (459)
                      +++++......+..+..+++|+.+++.+ +.++.++..  ...++|+.|+++++.++... +.   .+.++++|+.++++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-~~---~f~~l~~L~~l~l~  185 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVP-ER---AFRGLHSLDRLLLH  185 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TT---TTTTCTTCCEEECC
T ss_pred             ecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCcccccc-hh---hhccccccchhhhh
Confidence            9998854333334566788999999987 467777754  34788999999998887544 44   67899999999999


Q ss_pred             CCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619          264 GGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP  319 (459)
Q Consensus       264 ~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~  319 (459)
                      +  +......|..+    ..+++|++|++++ +.+..++  .+..+++|++|++++++
T Consensus       186 ~--N~l~~i~~~~f----~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         186 Q--NRVAHVHPHAF----RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             S--SCCCEECTTTT----TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             h--ccccccChhHh----hhhhhcccccccc-cccccccccccccccccCEEEecCCC
Confidence            8  33333345554    3678999999999 7888888  78889999999999854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=4.3e-14  Score=133.61  Aligned_cols=220  Identities=14%  Similarity=0.089  Sum_probs=164.9

Q ss_pred             eeEEEEecCCCCc--cccCCccccccCcEEEeecCCCce-eecc-ccccccccceEEeecccCCccccccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLT--SLWSKSELPATLENIYVDRCSKLA-FLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~--~lp~~~~~~~~L~~L~l~~c~~l~-~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  185 (459)
                      ++.|+++++..-.  .+|+.++.+++|++|++++|+++. .+|. .+++ ++|++|+++++......+..+..+.+|+.+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L-~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc-cccchhhhccccccccccccccchhhhccc
Confidence            8899999853322  577778888899999999887776 6773 4778 999999999975444446668889999999


Q ss_pred             eeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEe
Q 039619          186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLF  263 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~  263 (459)
                      +++++.....+|..+..+++|+.++++++.....+|..  .....++.++++++++.... +.   .+..+. +..+++.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~-~~---~~~~l~-~~~l~l~  205 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-PP---TFANLN-LAFVDLS  205 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-CG---GGGGCC-CSEEECC
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccc-cc---cccccc-ccccccc
Confidence            99998877888999999999999999987655566654  33445588888888876544 33   444443 3467777


Q ss_pred             CCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCC
Q 039619          264 GGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGC  341 (459)
Q Consensus       264 ~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c  341 (459)
                      +  +.....+|...    ...++|+.++++++ .+...+ .+..+++|+.|++++|.--..+|.. +-+++|++|+++++
T Consensus       206 ~--~~~~~~~~~~~----~~~~~l~~l~~~~~-~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         206 R--NMLEGDASVLF----GSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             S--SEEEECCGGGC----CTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             c--ccccccccccc----cccccccccccccc-cccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            7  45555556554    26789999999985 455444 7888899999999996443378863 22689999999987


Q ss_pred             c
Q 039619          342 P  342 (459)
Q Consensus       342 ~  342 (459)
                      .
T Consensus       279 ~  279 (313)
T d1ogqa_         279 N  279 (313)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.52  E-value=9.8e-13  Score=125.41  Aligned_cols=223  Identities=21%  Similarity=0.174  Sum_probs=110.5

Q ss_pred             CCCcCceEEeCCCCCCCCCccc--eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeec
Q 039619           88 SVTLKDPEVLDCPVCYEPLTIP--VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIIS  165 (459)
Q Consensus        88 p~~L~~L~l~~c~~l~~l~~lp--L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~  165 (459)
                      +.+|+.|++.++. +..+..+|  |++|++++ +.++.+| ....+++|++|+++++. +...+.  .. ..+..+.+..
T Consensus        77 ~~~L~~L~l~~n~-l~~l~~lp~~L~~L~L~~-n~l~~lp-~~~~l~~L~~L~l~~~~-~~~~~~--~~-~~l~~l~~~~  149 (353)
T d1jl5a_          77 PQSLKSLLVDNNN-LKALSDLPPLLEYLGVSN-NQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD--LP-PSLEFIAAGN  149 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCSCCTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSSC-CSCCCC--CC-TTCCEEECCS
T ss_pred             hhhhhhhhhhhcc-cchhhhhccccccccccc-ccccccc-chhhhccceeecccccc-cccccc--cc-ccccchhhcc
Confidence            3466666666642 13344444  66777665 3466666 33445567777666542 232221  11 3334444433


Q ss_pred             ccCCccccccCCCCCcccEEeeccccC-------------------cccCcccCCCCCCccEEeeccCCCCccccCCCCC
Q 039619          166 CSNLESIAEGLDDNTSLETMEIFICQN-------------------LKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFP  226 (459)
Q Consensus       166 c~~l~~lp~~l~~l~~L~~L~l~~c~~-------------------l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~  226 (459)
                      +....  ...+..++.++.|.+.++..                   +..++ ....++.|+.+.++++. ...++  ...
T Consensus       150 ~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~-~~~~~--~~~  223 (353)
T d1jl5a_         150 NQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLP--DLP  223 (353)
T ss_dssp             SCCSS--CCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCC--SCC
T ss_pred             ccccc--cccccccccceecccccccccccccccccccccccccccccccc-ccccccccccccccccc-ccccc--ccc
Confidence            22111  12344455566665554321                   11221 23456667777776543 22332  233


Q ss_pred             CCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcC-----------------CCceecCCCCCCCccCCCCcce
Q 039619          227 TNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGEC-----------------CGVVSFPPEKDTGKALPASLKH  289 (459)
Q Consensus       227 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c-----------------~~l~~l~~~~~~~~~~~~~L~~  289 (459)
                      .++..+.+.++.+....        ....++....+....+                 ..+..++.       .+++|++
T Consensus       224 ~~l~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~~L~~  288 (353)
T d1jl5a_         224 PSLEALNVRDNYLTDLP--------ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD-------LPPSLEE  288 (353)
T ss_dssp             TTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC-------CCTTCCE
T ss_pred             ccccccccccccccccc--------cccccccccccccccccccccccchhcccccccCccccccc-------cCCCCCE
Confidence            44555555443332111        1112222222222101                 12222222       4567888


Q ss_pred             EEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCchhH
Q 039619          290 LSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIE  345 (459)
Q Consensus       290 L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~  345 (459)
                      |++++ +.++.+|  ..+++|++|++++| +++++|.  .+++|++|++++|+ ++
T Consensus       289 L~Ls~-N~l~~lp--~~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~  337 (353)
T d1jl5a_         289 LNVSN-NKLIELP--ALPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LR  337 (353)
T ss_dssp             EECCS-SCCSCCC--CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CS
T ss_pred             EECCC-CccCccc--cccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc-CC
Confidence            88887 5677777  22567888888764 6777776  56778888888876 44

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.48  E-value=1.4e-12  Score=124.25  Aligned_cols=54  Identities=24%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             CCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619          306 NLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY  371 (459)
Q Consensus       306 ~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~  371 (459)
                      .+++|++|++++| +++.+|.  .+++|+.|++++|. ++...        ....++..+++.++.
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~L~~N~-L~~l~--------~~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA--LPPRLERLIASFNH-LAEVP--------ELPQNLKQLHVEYNP  335 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCC-ccCcccc--ccCCCCEEECCCCc-CCccc--------cccCCCCEEECcCCc
Confidence            3579999999996 6888986  46899999998874 33221        113467778887764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=1.9e-13  Score=122.93  Aligned_cols=145  Identities=18%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             CCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCC
Q 039619          176 LDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFT  255 (459)
Q Consensus       176 l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  255 (459)
                      +..+++|+.++++++ .++.++ .+..+++|+.+.+++|.. ..++.....+.++.+.++++.+....      .+..++
T Consensus        81 l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~  151 (227)
T d1h6ua2          81 LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNIS------PLAGLT  151 (227)
T ss_dssp             GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCG------GGGGCT
T ss_pred             ccccccccccccccc-cccccc-cccccccccccccccccc-cccchhccccchhhhhchhhhhchhh------hhcccc
Confidence            344444444444443 223332 233444444444444321 12222223344444444443333222      234455


Q ss_pred             ccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcce
Q 039619          256 SVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLR  335 (459)
Q Consensus       256 ~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~  335 (459)
                      +|++|++++  | .+...+.-     ..+++|++|++++ +.+++++.+.++++|++|++++| ++++++.-.-+++|+.
T Consensus       152 ~L~~L~l~~--n-~~~~~~~l-----~~l~~L~~L~Ls~-n~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~  221 (227)
T d1h6ua2         152 NLQYLSIGN--A-QVSDLTPL-----ANLSKLTTLKADD-NKISDISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFI  221 (227)
T ss_dssp             TCCEEECCS--S-CCCCCGGG-----TTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCE
T ss_pred             ccccccccc--c-ccccchhh-----cccccceecccCC-CccCCChhhcCCCCCCEEECcCC-cCCCCcccccCCCCCE
Confidence            566666555  2 22222221     1345566666665 35555554555666666666665 4665554222456666


Q ss_pred             EEee
Q 039619          336 LEIY  339 (459)
Q Consensus       336 L~i~  339 (459)
                      |+++
T Consensus       222 L~ls  225 (227)
T d1h6ua2         222 VTLT  225 (227)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            6654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=4.1e-12  Score=119.20  Aligned_cols=190  Identities=18%  Similarity=0.164  Sum_probs=108.1

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCC--ccccccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNL--ESIAEGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L  185 (459)
                      |++|++++ +.++.+|. . ....++.|.+.+ +.+..++.  .... ..+..+....+...  ...+..+..+++|+.+
T Consensus        81 L~~L~l~~-n~l~~l~~-~-~~~~l~~L~~~~-n~l~~l~~~~~~~~-~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          81 LERLYLSK-NQLKELPE-K-MPKTLQELRVHE-NEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             CCEEECCS-SCCSBCCS-S-CCTTCCEEECCS-SCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             cCEecccC-CccCcCcc-c-hhhhhhhhhccc-cchhhhhhhhhhcc-ccccccccccccccccCCCccccccccccCcc
Confidence            44555544 23445542 1 223566666555 23444431  1122 34444544433211  1123345556677777


Q ss_pred             eeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619          186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG  264 (459)
Q Consensus       186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~  264 (459)
                      ++.++ .+..+|..  .+++|+.|++.++......+.. ..+++++.|+++++.+.... +.   .+.++++|++|++++
T Consensus       156 ~l~~n-~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~---~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         156 RIADT-NITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NG---SLANTPHLRELHLNN  228 (305)
T ss_dssp             ECCSS-CCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TT---TGGGSTTCCEEECCS
T ss_pred             ccccC-CccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccc-cc---cccccccceeeeccc
Confidence            77665 44455443  2567777777665433332222 33566777777766665433 33   556788888888888


Q ss_pred             CcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--C------CCCCCCCCEEeccCCC
Q 039619          265 GECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--S------IENLTSFESLQLCCCP  319 (459)
Q Consensus       265 ~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~------l~~l~~L~~L~l~~c~  319 (459)
                         +.++.+|.++    ..+++|++|++++ ++++.++  .      ...+.+|+.|++++++
T Consensus       229 ---N~L~~lp~~l----~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         229 ---NKLVKVPGGL----ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ---SCCSSCCTTT----TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ---cccccccccc----ccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc
Confidence               3677787765    3678888888888 6788775  1      2356789999998865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.6e-13  Score=121.85  Aligned_cols=163  Identities=16%  Similarity=0.216  Sum_probs=75.4

Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID  235 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~  235 (459)
                      .+|++|+++++ .++.++ ++..+++|++|+++++ .++.++ .+..+++|+.|++++| .++.++....+++|+.|++.
T Consensus        46 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECT
T ss_pred             cCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc-cccCcc-ccccCccccccccccc-cccccccccccccccccccc
Confidence            34444444442 233332 2344444444444444 333332 2334444444444443 23344333334444455444


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEec
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQL  315 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l  315 (459)
                      ++.+....      .+..+++|+.+++++   +.+..++...     .+++|+.+++++ +.++.++.+..+++|++|++
T Consensus       121 ~~~~~~~~------~l~~l~~l~~l~~~~---n~l~~~~~~~-----~l~~L~~l~l~~-n~l~~i~~l~~l~~L~~L~L  185 (210)
T d1h6ta2         121 HNGISDIN------GLVHLPQLESLYLGN---NKITDITVLS-----RLTKLDTLSLED-NQISDIVPLAGLTKLQNLYL  185 (210)
T ss_dssp             TSCCCCCG------GGGGCTTCCEEECCS---SCCCCCGGGG-----GCTTCSEEECCS-SCCCCCGGGTTCTTCCEEEC
T ss_pred             cccccccc------ccccccccccccccc---cccccccccc-----cccccccccccc-ccccccccccCCCCCCEEEC
Confidence            43333222      344555556665554   2333332211     345566666665 45555544555666666666


Q ss_pred             cCCCCCCcCCCCCCCCCcceEEee
Q 039619          316 CCCPKLQKFPDNGLPTSLLRLEIY  339 (459)
Q Consensus       316 ~~c~~l~~lp~~~l~~sL~~L~i~  339 (459)
                      ++| .+++++.-.-+++|++|+++
T Consensus       186 s~N-~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         186 SKN-HISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred             CCC-CCCCChhhcCCCCCCEEEcc
Confidence            664 45555532224566666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-12  Score=118.22  Aligned_cols=207  Identities=20%  Similarity=0.232  Sum_probs=120.2

Q ss_pred             EEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeecc
Q 039619          113 LQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFI  189 (459)
Q Consensus       113 L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  189 (459)
                      ++.++ ..++++|.  .+++++++|++++ +.++.+|.  ...+ ++|++|+++++.....++ ..+..+++++++.+..
T Consensus        13 i~c~~-~~l~~iP~--~l~~~l~~L~Ls~-n~i~~l~~~~f~~l-~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          13 FLCQE-SKVTEIPS--DLPRNAIELRFVL-TKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEES-CSCSSCCS--CSCSCCSEEEEES-CCCCEECTTTTTTC-TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEeC-CCCCCcCC--CCCCCCCEEECcC-CcCCccChhHhhcc-chhhhhhhccccccceeeccccccccccccccccc
Confidence            34433 44566663  2345677777776 35666663  2456 677777777755444443 2355667777777766


Q ss_pred             ccCcccCc-ccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEE---ecCcccccccccCCCCCCCCC-ccCEEEEeC
Q 039619          190 CQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCI---DYEKIYKPLILERGPGLHRFT-SVRLLTLFG  264 (459)
Q Consensus       190 c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l---~~~~l~~~~~~~~~~~l~~l~-~L~~L~l~~  264 (459)
                      +..+..++ ..+..+++|+.|+++++ .+...+....+.+++.+..   .++.+.... ..   .+..++ .++.|++.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~-~~---~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RN---SFVGLSFESVILWLNK  162 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEEC-TT---SSTTSBSSCEEEECCS
T ss_pred             cccccccccccccccccccccccchh-hhccccccccccccccccccccccccccccc-cc---ccccccccceeeeccc
Confidence            65555443 33566777777777664 3545544444444444433   223333211 11   334443 677777766


Q ss_pred             CcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEe
Q 039619          265 GECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEI  338 (459)
Q Consensus       265 ~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i  338 (459)
                         +.+..++...    ....+++++...+++.++.++  .+.++++|++|+++++ +++.+|..++ .+|..|..
T Consensus       163 ---n~l~~i~~~~----~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~  229 (242)
T d1xwdc1         163 ---NGIQEIHNCA----FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGL-ENLKKLRA  229 (242)
T ss_dssp             ---SCCCEECTTT----TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSC-TTCCEEES
T ss_pred             ---cccccccccc----ccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHH-cCCccccc
Confidence               5666666644    144566666655557888887  4678888888888874 5788876443 44444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=2.4e-13  Score=120.75  Aligned_cols=162  Identities=19%  Similarity=0.277  Sum_probs=79.4

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |++|++++ ..++.++ .+..+++|++|+++++ .++.++..+.+ ++|++|+++++ .++.++ .+..+++|+.|++.+
T Consensus        48 L~~L~l~~-~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~~~~l-~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          48 IDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANL-KNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CCEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTC-TTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTT
T ss_pred             ccEEECcC-CCCCCch-hHhhCCCCCEEeCCCc-cccCccccccC-ccccccccccc-cccccc-ccccccccccccccc
Confidence            55555544 2344444 2333445555555553 34444433344 45555555543 344443 244445555555544


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG  269 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~  269 (459)
                      +. ...++ .+..+++|                       +.++++++.+.+..      .+..+++|+.+++++   +.
T Consensus       122 ~~-~~~~~-~l~~l~~l-----------------------~~l~~~~n~l~~~~------~~~~l~~L~~l~l~~---n~  167 (210)
T d1h6ta2         122 NG-ISDIN-GLVHLPQL-----------------------ESLYLGNNKITDIT------VLSRLTKLDTLSLED---NQ  167 (210)
T ss_dssp             SC-CCCCG-GGGGCTTC-----------------------CEEECCSSCCCCCG------GGGGCTTCSEEECCS---SC
T ss_pred             cc-ccccc-cccccccc-----------------------cccccccccccccc------ccccccccccccccc---cc
Confidence            42 22221 23344444                       44444444443322      234556666666665   24


Q ss_pred             ceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccC
Q 039619          270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCC  317 (459)
Q Consensus       270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~  317 (459)
                      +..++.-.     .+++|++|++++ +.+++++.+.++++|++|++++
T Consensus       168 l~~i~~l~-----~l~~L~~L~Ls~-N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         168 ISDIVPLA-----GLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCCGGGT-----TCTTCCEEECCS-SCCCBCGGGTTCTTCSEEEEEE
T ss_pred             cccccccc-----CCCCCCEEECCC-CCCCCChhhcCCCCCCEEEccC
Confidence            44443311     456666666666 4566666566677777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=3.1e-13  Score=118.93  Aligned_cols=160  Identities=21%  Similarity=0.244  Sum_probs=90.9

Q ss_pred             cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619          156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID  235 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~  235 (459)
                      +++++|+++++ .++++ +++..+++|++|++++| .++.++. +.++++|++|+++++. +..++....+++|+.|+++
T Consensus        40 ~~l~~L~l~~~-~i~~l-~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          40 DQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             TTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECC
T ss_pred             cCCCEEECCCC-CCCCc-cccccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-ccccccccccccccccccc
Confidence            55566666553 34444 23555666666666665 4444432 5566666666665542 3344433445566666665


Q ss_pred             cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEec
Q 039619          236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQL  315 (459)
Q Consensus       236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l  315 (459)
                      ++......      .+..+++|+.|++++   +.+..++.-.     ..++|++|++.+ +.++.++.+.++++|++|++
T Consensus       115 ~~~~~~~~------~~~~l~~L~~L~l~~---n~l~~~~~l~-----~~~~L~~L~l~~-n~l~~l~~l~~l~~L~~L~l  179 (199)
T d2omxa2         115 NNQITDID------PLKNLTNLNRLELSS---NTISDISALS-----GLTSLQQLNFSS-NQVTDLKPLANLTTLERLDI  179 (199)
T ss_dssp             SSCCCCCG------GGTTCTTCSEEECCS---SCCCCCGGGT-----TCTTCSEEECCS-SCCCCCGGGTTCTTCCEEEC
T ss_pred             cccccccc------ccchhhhhHHhhhhh---hhhccccccc-----cccccccccccc-ccccCCccccCCCCCCEEEC
Confidence            54443222      446677777777776   2444444321     556777777776 56666666667778888888


Q ss_pred             cCCCCCCcCCCCCCCCCcceE
Q 039619          316 CCCPKLQKFPDNGLPTSLLRL  336 (459)
Q Consensus       316 ~~c~~l~~lp~~~l~~sL~~L  336 (459)
                      ++| ++++++.-.-+++|++|
T Consensus       180 s~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         180 SSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             CSS-CCCCCGGGGGCTTCSEE
T ss_pred             CCC-CCCCCccccCCCCCCcC
Confidence            775 46666542224555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=6.1e-13  Score=119.50  Aligned_cols=184  Identities=16%  Similarity=0.172  Sum_probs=138.0

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI  189 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  189 (459)
                      |+.|++.+| .+++++ .+..+++|++|+++++ .+..++....+ ++|+.++++++ .++.++ .+..+++|+.+.+++
T Consensus        43 L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~l~~l-~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          43 ITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNL-TKITELELSGN-PLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             CCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTC-CSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCEEECCCC-CCCcch-hHhcCCCCcEeecCCc-eeecccccccc-ccccccccccc-cccccc-ccccccccccccccc
Confidence            666666663 566665 4556679999999885 56666555677 89999999886 456664 477889999999988


Q ss_pred             ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619          190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG  269 (459)
Q Consensus       190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~  269 (459)
                      +... .+ ..+...+.++.+.++++. +........+++|++|++.++.+....      .++++++|++|++++  | .
T Consensus       117 ~~~~-~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~Ls~--n-~  184 (227)
T d1h6ua2         117 TQIT-DV-TPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADD--N-K  184 (227)
T ss_dssp             SCCC-CC-GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCS--S-C
T ss_pred             cccc-cc-chhccccchhhhhchhhh-hchhhhhccccccccccccccccccch------hhcccccceecccCC--C-c
Confidence            7543 33 235567888999987754 333333345788999999998776554      678999999999998  3 6


Q ss_pred             ceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccC
Q 039619          270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCC  317 (459)
Q Consensus       270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~  317 (459)
                      +..++.-.     .+++|++|++++| ++++++.+.++++|+.|++++
T Consensus       185 l~~l~~l~-----~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISDISPLA-----SLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCGGGG-----GCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             cCCChhhc-----CCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            77776422     6789999999994 799988788999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=7.4e-13  Score=116.47  Aligned_cols=159  Identities=22%  Similarity=0.225  Sum_probs=79.3

Q ss_pred             cCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeec
Q 039619          133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQ  212 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  212 (459)
                      ++++|+++++ .++++.....+ ++|++|+++++ .++.++. +..+++|++|+++++ .+..++ .+..+++|+.|+++
T Consensus        41 ~l~~L~l~~~-~i~~l~~l~~l-~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRL-GIKSIDGVEYL-NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTS-CCCCCTTGGGC-TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCC-CCCCccccccC-CCcCcCccccc-cccCccc-ccCCccccccccccc-cccccc-cccccccccccccc
Confidence            4444444442 23333322334 45555555543 3444432 445555555555554 233332 24455555555554


Q ss_pred             cCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEe
Q 039619          213 DCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSI  292 (459)
Q Consensus       213 ~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l  292 (459)
                      +|.. ...+....+++|+.|+++++.+....      .+..+++|+.|++.+   +.+..++.-.     .+++|++|++
T Consensus       115 ~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~------~l~~~~~L~~L~l~~---n~l~~l~~l~-----~l~~L~~L~l  179 (199)
T d2omxa2         115 NNQI-TDIDPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLNFSS---NQVTDLKPLA-----NLTTLERLDI  179 (199)
T ss_dssp             SSCC-CCCGGGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCS---SCCCCCGGGT-----TCTTCCEEEC
T ss_pred             cccc-ccccccchhhhhHHhhhhhhhhcccc------ccccccccccccccc---ccccCCcccc-----CCCCCCEEEC
Confidence            4432 22222233455555555555444322      456667777777766   3444444321     5567777777


Q ss_pred             ecCCCCCccCCCCCCCCCCEE
Q 039619          293 WNFPNLERISSIENLTSFESL  313 (459)
Q Consensus       293 ~~c~~l~~l~~l~~l~~L~~L  313 (459)
                      ++ +.+++++.+..+++|++|
T Consensus       180 s~-N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         180 SS-NKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             CS-SCCCCCGGGGGCTTCSEE
T ss_pred             CC-CCCCCCccccCCCCCCcC
Confidence            77 456666655566666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.1e-12  Score=112.62  Aligned_cols=198  Identities=18%  Similarity=0.195  Sum_probs=132.7

Q ss_pred             eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEE
Q 039619          110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETM  185 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L  185 (459)
                      +++|++++ +.++.+|.. ...+++|++|+++++.....++.  ...+ ++++++.+..+..+..++ ..+..+++|++|
T Consensus        31 l~~L~Ls~-n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l-~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          31 AIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CSEEEEES-CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESC-TTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCEEECcC-CcCCccChhHhhccchhhhhhhccccccceeeccccccc-ccccccccccccccccccccccccccccccc
Confidence            67777766 467777743 24456999999998766665553  2456 788999988877777664 456889999999


Q ss_pred             eeccccCcccCcc--cCCCCCCccEEeeccCCCCccccCCC---CCCCccEEEEecCcccccccccCCCCCCCCCccCEE
Q 039619          186 EIFICQNLKALPN--GLRNLTSLQYLLIQDCPTIGSFTANC---FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLL  260 (459)
Q Consensus       186 ~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L  260 (459)
                      ++.++ .+...+.  .+..++.+..+... +..+..++...   ....++.|++.++.++...  .   .....++++++
T Consensus       109 ~l~~~-~l~~~~~~~~~~~l~~l~~~~~~-n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~--~---~~~~~~~l~~~  181 (242)
T d1xwdc1         109 LISNT-GIKHLPDVHKIHSLQKVLLDIQD-NINIHTIERNSFVGLSFESVILWLNKNGIQEIH--N---CAFNGTQLDEL  181 (242)
T ss_dssp             EEESC-CCCSCCCCTTTCBSSCEEEEEES-CTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC--T---TTTTTCCEEEE
T ss_pred             ccchh-hhccccccccccccccccccccc-ccccccccccccccccccceeeecccccccccc--c---ccccchhhhcc
Confidence            99987 4555443  22234444444443 34566665442   3567888999887776432  1   33456677777


Q ss_pred             EEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCC
Q 039619          261 TLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFP  325 (459)
Q Consensus       261 ~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp  325 (459)
                      ....  ++.++.+|...   +..+++|++|++++ ++++.+|  .+.++++|+.+++.   +++.+|
T Consensus       182 ~~l~--~n~l~~l~~~~---f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~~---~l~~lp  239 (242)
T d1xwdc1         182 NLSD--NNNLEELPNDV---FHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTY---NLKKLP  239 (242)
T ss_dssp             ECTT--CTTCCCCCTTT---TTTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSEE---SSSCSC
T ss_pred             cccc--ccccccccHHH---hcCCCCCCEEECCC-CcCCccCHHHHcCCcccccCcCC---CCCcCC
Confidence            6656  57888888753   13578999999999 7899998  56666666666654   455555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1e-14  Score=136.06  Aligned_cols=177  Identities=14%  Similarity=0.137  Sum_probs=92.3

Q ss_pred             ccCcEEEeecCCCcee-ec-cccccccccceEEeecccCCccccccCCCCCcccEEeeccccCccc--CcccCCCCCCcc
Q 039619          132 ATLENIYVDRCSKLAF-LS-LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKA--LPNGLRNLTSLQ  207 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~-l~-~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~  207 (459)
                      .+|++|++++|..-.. +. ....+ ++|++|++++|..-...+..+..+++|++|++++|..++.  +..-...+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhC-CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            4778888777632111 11 22455 7788888877743333445566677788888887766642  211224567788


Q ss_pred             EEeeccCCCCccccC--C--CCCCCccEEEEec--CcccccccccCCCCCCCCCccCEEEEeCCcCCCcee-cCCCCCCC
Q 039619          208 YLLIQDCPTIGSFTA--N--CFPTNLASVCIDY--EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS-FPPEKDTG  280 (459)
Q Consensus       208 ~L~l~~c~~l~~lp~--~--~~~~~L~~L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~-l~~~~~~~  280 (459)
                      +|++++|..+..-..  .  ..+++|+.|++++  ..+++.....   ...++++|++|++++  |..++. .....   
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~---l~~~~~~L~~L~L~~--~~~itd~~~~~l---  196 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---LVRRCPNLVHLDLSD--SVMLKNDCFQEF---  196 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHHCTTCSEEECTT--CTTCCGGGGGGG---
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccc---ccccccccccccccc--ccCCCchhhhhh---
Confidence            888877766543110  0  2245666666655  2232211000   123456666666666  444331 11111   


Q ss_pred             ccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619          281 KALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC  318 (459)
Q Consensus       281 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c  318 (459)
                       ..+++|++|++++|+.+++-.  .+.++++|+.|++.+|
T Consensus       197 -~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 -FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             -cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             134456666666655554332  3445555666665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-13  Score=128.23  Aligned_cols=177  Identities=15%  Similarity=0.165  Sum_probs=123.1

Q ss_pred             cccceEEeecccCCc-cccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC---CCCCCccE
Q 039619          156 KALKHLYIISCSNLE-SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN---CFPTNLAS  231 (459)
Q Consensus       156 ~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~  231 (459)
                      .+|++|++++|.... .+...+.++++|++|++++|..-...+..+..+++|++|++++|..++.....   ..+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            789999999875332 23455678999999999999543344456778899999999999887643211   23689999


Q ss_pred             EEEec-CcccccccccCCCCC-CCCCccCEEEEeCCcCC-Ccee--cCCCCCCCccCCCCcceEEeecCCCCCccC--CC
Q 039619          232 VCIDY-EKIYKPLILERGPGL-HRFTSVRLLTLFGGECC-GVVS--FPPEKDTGKALPASLKHLSIWNFPNLERIS--SI  304 (459)
Q Consensus       232 L~l~~-~~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~c~-~l~~--l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l  304 (459)
                      |++++ ..+++.....   .+ ...++|+.|++++  |. .+..  +..-.    ..+++|++|++++|..++.-.  .+
T Consensus       126 L~ls~c~~~~~~~~~~---~~~~~~~~L~~L~l~~--~~~~i~~~~l~~l~----~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         126 LNLSWCFDFTEKHVQV---AVAHVSETITQLNLSG--YRKNLQKSDLSTLV----RRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             EECCCCTTCCHHHHHH---HHHHSCTTCCEEECCS--CGGGSCHHHHHHHH----HHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             cccccccccccccchh---hhcccccccchhhhcc--cccccccccccccc----cccccccccccccccCCCchhhhhh
Confidence            99998 5554321000   12 2357899999998  53 2221  11111    145789999999998887543  67


Q ss_pred             CCCCCCCEEeccCCCCCCcCCCC--CCCCCcceEEeeCC
Q 039619          305 ENLTSFESLQLCCCPKLQKFPDN--GLPTSLLRLEIYGC  341 (459)
Q Consensus       305 ~~l~~L~~L~l~~c~~l~~lp~~--~l~~sL~~L~i~~c  341 (459)
                      ..+++|++|++++|+.+++-.-.  +-.++|+.|++.+|
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            78899999999999887643211  12578999999988

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=8e-10  Score=88.71  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=35.8

Q ss_pred             EEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeecc
Q 039619          136 NIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQD  213 (459)
Q Consensus       136 ~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  213 (459)
                      .|++++ ++++.++..+.+ ++|++|++++ +.++.+|+.+..+++|++|+++++ .++.+| ++..+++|++|++++
T Consensus         2 ~L~Ls~-n~l~~l~~l~~l-~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAH-KDLTVLCHLEQL-LLVTHLDLSH-NRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTT-SCCSSCCCGGGG-TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred             EEEcCC-CCCCCCcccccC-CCCCEEECCC-CccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCC
Confidence            455555 344444433444 5555555554 244555544555555555555553 444443 244555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=3.4e-09  Score=84.93  Aligned_cols=95  Identities=20%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             EEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeeccc
Q 039619          112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFIC  190 (459)
Q Consensus       112 ~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  190 (459)
                      .|++++ +.++.++ ....+++|++|++++ +.++.+|. .+.+ ++|++|++++ +.++.+| ++..+++|++|+++++
T Consensus         2 ~L~Ls~-n~l~~l~-~l~~l~~L~~L~ls~-N~l~~lp~~~~~l-~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAH-KDLTVLC-HLEQLLLVTHLDLSH-NRLRALPPALAAL-RCLEVLQASD-NALENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTT-SCCSSCC-CGGGGTTCCEEECCS-SCCCCCCGGGGGC-TTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCC-CCCCCCc-ccccCCCCCEEECCC-CccCcchhhhhhh-hccccccccc-ccccccC-ccccccccCeEECCCC
Confidence            344444 3444444 233333555555544 34444432 2334 4555555554 2344443 2444555555555443


Q ss_pred             cCcccCc--ccCCCCCCccEEeecc
Q 039619          191 QNLKALP--NGLRNLTSLQYLLIQD  213 (459)
Q Consensus       191 ~~l~~lp--~~l~~l~~L~~L~l~~  213 (459)
                       .+..++  ..+..+++|+.|++++
T Consensus        76 -~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          76 -RLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             -CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             -ccCCCCCchhhcCCCCCCEEECCC
Confidence             333332  1233444444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=4.8e-09  Score=90.90  Aligned_cols=107  Identities=14%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             CCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--
Q 039619          225 FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--  302 (459)
Q Consensus       225 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--  302 (459)
                      +++++++|++++|.++... +.  ..+.++++|++|++++   +.+..++...   ...+++|++|++++ +.++.++  
T Consensus        27 lp~~l~~L~Ls~N~i~~~~-~~--~~f~~l~~L~~L~L~~---N~i~~~~~~~---~~~~~~L~~L~Ls~-N~l~~l~~~   96 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRIS-SD--GLFGRLPHLVKLELKR---NQLTGIEPNA---FEGASHIQELQLGE-NKIKEISNK   96 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBC-CS--CSGGGCTTCCEEECCS---SCCCCBCTTT---TTTCTTCCEEECCS-CCCCEECSS
T ss_pred             CCCCCCEEEeCCCCCcccc-cc--cccCCCceEeeeeccc---cccccccccc---cccccccceeeecc-ccccccCHH
Confidence            3445555555554443211 11  1445566666666665   3343333321   02355666666666 5666665  


Q ss_pred             CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619          303 SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP  342 (459)
Q Consensus       303 ~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~  342 (459)
                      .+.++++|++|++++ ++++.++...+  .++|++|++++.+
T Consensus        97 ~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccc
Confidence            456666666666666 35666655433  4566666666543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.4e-10  Score=93.03  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=37.9

Q ss_pred             CCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCCCCCcCCC--
Q 039619          252 HRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCPKLQKFPD--  326 (459)
Q Consensus       252 ~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~lp~--  326 (459)
                      ..+++|++|++++   +.+..++....   ..+++|+.|++++ +.++.++   .+..+++|++|++++|+ +...+.  
T Consensus        60 ~~l~~L~~L~ls~---N~i~~l~~~~~---~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r  131 (162)
T d1a9na_          60 PLLRRLKTLLVNN---NRICRIGEGLD---QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYR  131 (162)
T ss_dssp             CCCSSCCEEECCS---SCCCEECSCHH---HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHH
T ss_pred             ccCcchhhhhccc---ccccCCCcccc---ccccccccceecc-ccccccccccccccccccchhhcCCCc-cccccchH
Confidence            4444555555554   23444443210   1234555555555 4444443   34556666666666653 444442  


Q ss_pred             ---CCCCCCcceEEee
Q 039619          327 ---NGLPTSLLRLEIY  339 (459)
Q Consensus       327 ---~~l~~sL~~L~i~  339 (459)
                         ...+++|+.|+-.
T Consensus       132 ~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         132 LYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHHHHHCTTCSEETTE
T ss_pred             HHHHHHCCCcCeeCCC
Confidence               0114566666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=2.2e-08  Score=86.59  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=66.2

Q ss_pred             ceEEeecccCCccccccCCCCCcccEEeeccccCcc-cC-cccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEec
Q 039619          159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLK-AL-PNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDY  236 (459)
Q Consensus       159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~-~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~  236 (459)
                      +.++.++ ..++++|.++  .+++++|+++++ .+. .+ +..+..+++|+.|+++++. +..++..             
T Consensus        11 ~~v~Cs~-~~L~~iP~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~-------------   72 (192)
T d1w8aa_          11 TTVDCTG-RGLKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN-------------   72 (192)
T ss_dssp             TEEECTT-SCCSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT-------------
T ss_pred             CEEEEeC-CCcCccCCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-ccccccc-------------
Confidence            4455544 4566677655  256777777775 333 23 2334566777777776543 3333322             


Q ss_pred             CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEe
Q 039619          237 EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQ  314 (459)
Q Consensus       237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~  314 (459)
                                   .+..+++|++|++++   +.+..++...   +..+++|++|++++ +.++.++  .+..+++|++|+
T Consensus        73 -------------~~~~~~~L~~L~Ls~---N~l~~l~~~~---F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~  132 (192)
T d1w8aa_          73 -------------AFEGASHIQELQLGE---NKIKEISNKM---FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             -------------TTTTCTTCCEEECCS---CCCCEECSSS---STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEE
T ss_pred             -------------ccccccccceeeecc---ccccccCHHH---HhCCCcccccccCC-ccccccCHHHhcCCccccccc
Confidence                         344555555555555   3455554432   02345556666665 5565555  455666666666


Q ss_pred             ccCC
Q 039619          315 LCCC  318 (459)
Q Consensus       315 l~~c  318 (459)
                      ++++
T Consensus       133 L~~N  136 (192)
T d1w8aa_         133 LASN  136 (192)
T ss_dssp             CTTC
T ss_pred             cccc
Confidence            6664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.1e-09  Score=89.48  Aligned_cols=100  Identities=21%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccC-CCCCcccEEeec
Q 039619          110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGL-DDNTSLETMEIF  188 (459)
Q Consensus       110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~  188 (459)
                      +++|++++ +.++.++.....+++|+.|+++++ .++.++....+ ++|++|++++| .+..++..+ ..+++|++|+++
T Consensus        20 lr~L~L~~-n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l-~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          20 DRELDLRG-YKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLL-RRLKTLLVNNN-RICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             CEEEECTT-SCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCC-SSCCEEECCSS-CCCEECSCHHHHCTTCCEEECC
T ss_pred             CcEEECCC-CCCCccCccccccccCCEEECCCC-CCCccCCcccC-cchhhhhcccc-cccCCCccccccccccccceec
Confidence            44555544 345555433333446666666663 45555444445 56666666654 345554432 345666666666


Q ss_pred             cccCcccCcc--cCCCCCCccEEeeccC
Q 039619          189 ICQNLKALPN--GLRNLTSLQYLLIQDC  214 (459)
Q Consensus       189 ~c~~l~~lp~--~l~~l~~L~~L~l~~c  214 (459)
                      ++ .+..++.  .+..+++|++|++++|
T Consensus        96 ~N-~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          96 NN-SLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             SC-CCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cc-cccccccccccccccccchhhcCCC
Confidence            55 3333332  3445555666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.53  E-value=1.5e-10  Score=101.22  Aligned_cols=69  Identities=16%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             CccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCccc
Q 039619          169 LESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIY  240 (459)
Q Consensus       169 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~  240 (459)
                      ++.++..+..+++|++|+++++ .++.++ .+..+++|+.|++++| .++.++.. ..+++|++|++++|.++
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECC
T ss_pred             hhhhhhHHhcccccceeECccc-CCCCcc-cccCCccccChhhccc-cccccccccccccccccccccccccc
Confidence            4444445555666666666654 344543 3555566666666554 34444322 12334455555444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.39  E-value=1.5e-09  Score=94.67  Aligned_cols=31  Identities=10%  Similarity=0.138  Sum_probs=12.2

Q ss_pred             cCcEEEeecCCCceeeccccccccccceEEeec
Q 039619          133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIIS  165 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~  165 (459)
                      +|++|+++++ .++.++....+ ++|++|++++
T Consensus        49 ~L~~L~Ls~n-~I~~i~~l~~l-~~L~~L~Ls~   79 (198)
T d1m9la_          49 ACKHLALSTN-NIEKISSLSGM-ENLRILSLGR   79 (198)
T ss_dssp             TCCEEECSEE-EESCCCCHHHH-TTCCEEECCE
T ss_pred             ccceeECccc-CCCCcccccCC-ccccChhhcc
Confidence            4444444432 23333322233 4444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.5e-07  Score=73.87  Aligned_cols=27  Identities=15%  Similarity=0.150  Sum_probs=12.9

Q ss_pred             cCcccCCCCCCccEEeeccCCCCcccc
Q 039619          195 ALPNGLRNLTSLQYLLIQDCPTIGSFT  221 (459)
Q Consensus       195 ~lp~~l~~l~~L~~L~l~~c~~l~~lp  221 (459)
                      ..|..+..+++|++|++.+.+.++.++
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~   48 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLE   48 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEEC
T ss_pred             cCcccccCccccCeeecCCCccccccC
Confidence            344444445555555554444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.4e-06  Score=72.09  Aligned_cols=86  Identities=16%  Similarity=0.138  Sum_probs=49.3

Q ss_pred             CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCC
Q 039619          250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDN  327 (459)
Q Consensus       250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~  327 (459)
                      .+..+++|++|++.+  .+.++.++...   +..+++|+.|++++ ++++.++  .+..+++|++|++++ ++++.+|..
T Consensus        26 ~l~~l~~l~~L~l~~--n~~l~~i~~~~---f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~   98 (156)
T d2ifga3          26 HLPGAENLTELYIEN--QQHLQHLELRD---LRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK   98 (156)
T ss_dssp             TSCSCSCCSEEECCS--CSSCCEECGGG---SCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST
T ss_pred             cccCccccCeeecCC--CccccccCchh---hccccccCcceeec-cccCCcccccccccccccceeccC-CCCcccChh
Confidence            345556666666655  34455555431   02355666666666 5666665  456666777777766 456666654


Q ss_pred             CC-CCCcceEEeeCCc
Q 039619          328 GL-PTSLLRLEIYGCP  342 (459)
Q Consensus       328 ~l-~~sL~~L~i~~c~  342 (459)
                      .+ ..+|+.|++++.|
T Consensus        99 ~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          99 TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             TTCSCCCCEEECCSSC
T ss_pred             hhccccccccccCCCc
Confidence            33 3456677776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.22  E-value=9.6e-06  Score=76.04  Aligned_cols=13  Identities=23%  Similarity=0.445  Sum_probs=5.8

Q ss_pred             CCCCCCEEeccCC
Q 039619          306 NLTSFESLQLCCC  318 (459)
Q Consensus       306 ~l~~L~~L~l~~c  318 (459)
                      .+++|++|++++|
T Consensus       241 ~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         241 SWPNLRELGLNDC  253 (344)
T ss_dssp             GCTTCCEEECTTC
T ss_pred             ccccchhhhhhcC
Confidence            3444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.81  E-value=3.9e-05  Score=71.72  Aligned_cols=217  Identities=14%  Similarity=0.084  Sum_probs=126.3

Q ss_pred             eeEEEEecCCCCc-----cccCCccccccCcEEEeecCCCc--e-eec--------cccccccccceEEeecccCCcc--
Q 039619          110 VYQLQIIPCPSLT-----SLWSKSELPATLENIYVDRCSKL--A-FLS--------LRGNLSKALKHLYIISCSNLES--  171 (459)
Q Consensus       110 L~~L~l~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~l--~-~l~--------~~~~lp~~L~~L~l~~c~~l~~--  171 (459)
                      |++|+|+++ .+.     .+.......++|+.|+++++..-  . ..+        ..... ++|++|++++|. +..  
T Consensus        33 l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~n~-i~~~~  109 (344)
T d2ca6a1          33 VKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNA-FGPTA  109 (344)
T ss_dssp             CCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCC-CCTTT
T ss_pred             CCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhC-CCcccccccccc-ccccc
Confidence            889999874 332     22223344568999999875321  1 111        01334 789999999864 322  


Q ss_pred             ---ccccCCCCCcccEEeeccccCccc-----Ccc---------cCCCCCCccEEeeccCCCCcc-----ccCC-CCCCC
Q 039619          172 ---IAEGLDDNTSLETMEIFICQNLKA-----LPN---------GLRNLTSLQYLLIQDCPTIGS-----FTAN-CFPTN  228 (459)
Q Consensus       172 ---lp~~l~~l~~L~~L~l~~c~~l~~-----lp~---------~l~~l~~L~~L~l~~c~~l~~-----lp~~-~~~~~  228 (459)
                         +...+...++|++|++++|. +..     +..         .....+.|+.+.++++ .+..     +... ...++
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTT
T ss_pred             ccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccc-cccccccccccchhhhhhh
Confidence               34445567899999998873 221     000         1134567888988764 3322     1111 23578


Q ss_pred             ccEEEEecCcccccc----cccCCCCCCCCCccCEEEEeCCcCCC----ceecCCCCCCCccCCCCcceEEeecCCCCCc
Q 039619          229 LASVCIDYEKIYKPL----ILERGPGLHRFTSVRLLTLFGGECCG----VVSFPPEKDTGKALPASLKHLSIWNFPNLER  300 (459)
Q Consensus       229 L~~L~l~~~~l~~~~----~~~~~~~l~~l~~L~~L~l~~~~c~~----l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~  300 (459)
                      |++|+++++.+....    ..+   .+..+++|+.|++++  +.-    ...+....    ...++|++|++++| .+..
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~---~l~~~~~L~~L~Ls~--N~i~~~g~~~L~~~l----~~~~~L~~L~Ls~n-~i~~  257 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLE---GLAYCQELKVLDLQD--NTFTHLGSSALAIAL----KSWPNLRELGLNDC-LLSA  257 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHT---TGGGCTTCCEEECCS--SCCHHHHHHHHHHHG----GGCTTCCEEECTTC-CCCH
T ss_pred             hcccccccccccccccccchhh---hhcchhhhccccccc--ccccccccccccccc----cccccchhhhhhcC-ccCc
Confidence            999999887765321    022   456788999999998  321    11122212    24578999999985 5654


Q ss_pred             cC------CC--CCCCCCCEEeccCCCCCCcC-----CCC--CCCCCcceEEeeCCc
Q 039619          301 IS------SI--ENLTSFESLQLCCCPKLQKF-----PDN--GLPTSLLRLEIYGCP  342 (459)
Q Consensus       301 l~------~l--~~l~~L~~L~l~~c~~l~~l-----p~~--~l~~sL~~L~i~~c~  342 (459)
                      ..      .+  ...+.|++|++++| .++.-     ...  .-.++|++|+++++.
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            32      22  23467899999885 34321     110  014578888887754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.00014  Score=59.95  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=15.0

Q ss_pred             CCcccEEeeccccCcccCc---ccCCCCCCccEEeecc
Q 039619          179 NTSLETMEIFICQNLKALP---NGLRNLTSLQYLLIQD  213 (459)
Q Consensus       179 l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~l~~  213 (459)
                      +++|++|+++++ .++.++   ..+..+++|+.|++++
T Consensus        64 ~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          64 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             CCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc
Confidence            445555555554 233221   1223445555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0012  Score=62.87  Aligned_cols=104  Identities=16%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             cCcEEEeecCCCceeec---cccccccccceEEeecccCCc-----cccccCCCCCcccEEeeccccCcc-----cCccc
Q 039619          133 TLENIYVDRCSKLAFLS---LRGNLSKALKHLYIISCSNLE-----SIAEGLDDNTSLETMEIFICQNLK-----ALPNG  199 (459)
Q Consensus       133 ~L~~L~l~~c~~l~~l~---~~~~lp~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~c~~l~-----~lp~~  199 (459)
                      +|++|++++ +++....   ....+ +++++|++.+|. ++     .+...+..+++|++|+++++ .++     .+...
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l-~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLL-QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHH-TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhC-CCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHH
Confidence            789999965 6776643   22456 889999999984 43     33455677899999999887 443     22333


Q ss_pred             CC-CCCCccEEeeccCCCCccc-----cC-CCCCCCccEEEEecCcccc
Q 039619          200 LR-NLTSLQYLLIQDCPTIGSF-----TA-NCFPTNLASVCIDYEKIYK  241 (459)
Q Consensus       200 l~-~l~~L~~L~l~~c~~l~~l-----p~-~~~~~~L~~L~l~~~~l~~  241 (459)
                      +. ...+|++|++++|. ++..     +. ....++|++|+++++.+..
T Consensus        79 l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchh
Confidence            33 23579999998874 5432     11 1346788999888876653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0036  Score=59.49  Aligned_cols=93  Identities=14%  Similarity=0.223  Sum_probs=49.8

Q ss_pred             CcCceEEeCCCCCCCCCcc------c----eeEEEEecCCCCcc-----ccCCccccccCcEEEeecCCCceeec---c-
Q 039619           90 TLKDPEVLDCPVCYEPLTI------P----VYQLQIIPCPSLTS-----LWSKSELPATLENIYVDRCSKLAFLS---L-  150 (459)
Q Consensus        90 ~L~~L~l~~c~~l~~l~~l------p----L~~L~l~~c~~l~~-----lp~~~~~~~~L~~L~l~~c~~l~~l~---~-  150 (459)
                      +|++|++++    +.++..      |    +++|+|++|. ++.     +.......++|++|+++++ .++...   . 
T Consensus         3 ~l~~ld~~~----~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQC----EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEES----CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred             CCCEEEeeC----CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHH
Confidence            567777766    455432      2    7777777763 431     1211233456777777664 343211   0 


Q ss_pred             ---ccccccccceEEeecccCCcc-----ccccCCCCCcccEEeeccc
Q 039619          151 ---RGNLSKALKHLYIISCSNLES-----IAEGLDDNTSLETMEIFIC  190 (459)
Q Consensus       151 ---~~~lp~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c  190 (459)
                         ...- .+|++|++++|. ++.     ++..+..+++|++|+++++
T Consensus        77 ~~l~~~~-~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          77 QGLQTPS-CKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HTTCSTT-CCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHhcCC-CCCCEEECCCCC-ccccccccccchhhccccccccccccc
Confidence               0111 467777777663 432     2444556677777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.00084  Score=55.07  Aligned_cols=35  Identities=20%  Similarity=0.086  Sum_probs=18.3

Q ss_pred             CCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619          284 PASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP  319 (459)
Q Consensus       284 ~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~  319 (459)
                      +++|+.|++++ +.+++++  ......+|+.|++.+++
T Consensus        90 l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          90 APNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             STTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             CCccccccccc-CccccchhhhhhhccccceeecCCCC
Confidence            45566666665 5555555  11122346666666643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.23  E-value=0.023  Score=46.28  Aligned_cols=11  Identities=9%  Similarity=-0.242  Sum_probs=5.8

Q ss_pred             CCccCEEEEeC
Q 039619          254 FTSVRLLTLFG  264 (459)
Q Consensus       254 l~~L~~L~l~~  264 (459)
                      -++|++|+++.
T Consensus       130 n~sL~~l~l~~  140 (167)
T d1pgva_         130 NESLLRVGISF  140 (167)
T ss_dssp             CSSCCEEECCC
T ss_pred             CCCccEeeCcC
Confidence            34555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.55  E-value=0.13  Score=41.46  Aligned_cols=14  Identities=7%  Similarity=-0.237  Sum_probs=7.6

Q ss_pred             CCCCCccCEEEEeC
Q 039619          251 LHRFTSVRLLTLFG  264 (459)
Q Consensus       251 l~~l~~L~~L~l~~  264 (459)
                      +..-++|++|++++
T Consensus        96 L~~n~sL~~L~l~~  109 (167)
T d1pgva_          96 TLVTQSIVEFKADN  109 (167)
T ss_dssp             TTTTCCCSEEECCC
T ss_pred             HHhCCcCCEEECCC
Confidence            44445566666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.98  E-value=0.04  Score=44.55  Aligned_cols=12  Identities=8%  Similarity=-0.089  Sum_probs=5.4

Q ss_pred             CCCccCEEEEeC
Q 039619          253 RFTSVRLLTLFG  264 (459)
Q Consensus       253 ~l~~L~~L~l~~  264 (459)
                      ..++|++|++..
T Consensus       130 ~n~~L~~L~l~~  141 (166)
T d1io0a_         130 KNTTLLKFGYHF  141 (166)
T ss_dssp             HCSSCCEEECCC
T ss_pred             hCCCcCEEeCcC
Confidence            334455554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.31  E-value=0.12  Score=41.44  Aligned_cols=80  Identities=23%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             ccCcEEEeecCCCceeecc---c---cccccccceEEeecccCCcc-----ccccCCCCCcccEEeeccccCc----ccC
Q 039619          132 ATLENIYVDRCSKLAFLSL---R---GNLSKALKHLYIISCSNLES-----IAEGLDDNTSLETMEIFICQNL----KAL  196 (459)
Q Consensus       132 ~~L~~L~l~~c~~l~~l~~---~---~~lp~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l----~~l  196 (459)
                      ++|++|+++++..+..-..   .   ... ++|++|++++|. +..     +-..+...++++.+++++|..-    ..+
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n-~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcC-CccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            3566666655443332210   0   223 556666666652 211     1222334456666666655221    122


Q ss_pred             cccCCCCCCccEEeecc
Q 039619          197 PNGLRNLTSLQYLLIQD  213 (459)
Q Consensus       197 p~~l~~l~~L~~L~l~~  213 (459)
                      ...+...++|+.++|+.
T Consensus        95 ~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          95 VEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHGGGGCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeecc
Confidence            23444556666655543