Citrus Sinensis ID: 039643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MNMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDGYLRERLPTLPDGNFKLNLEWCFPEHDA
Secondary Structure (PSIPRED)
ccccccccHHHHccccccHHHcccccccccccccccccccccHHcHHHHcccccEEEEEEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccEEEEEcEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEEccccEEEEcccccccEEEEEEccccccEEEEEccccccEEEEEEEEEEEccccccEEEccccccHHHHHHHHccccccEEEEEccccccEEEEEEcccEEEEEEcccccccEEEcccccccEEEEccccccEEEccccccccccEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEccEEEcccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHccccEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccccccccHHHHHHHcccccccccccccccccccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcccccccccccHHHHHccccccHHHHcccHHHHHHHccccHHHHEEHEEccccccccHHHHHEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEcccccccccEcccEEEEcccEEEEEEccEEcccccccEccHHHHEEEEEEEEccHHHHHHHHHcccHHHEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEcEEEEcccccccEEEEcccEccHHHHHHHHHcccHHHEEEEcccccEEEEEEccHHEEEEEEEccccccEEEccccccEEEEEccccccEEEEcccccccEEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEcEEEEEcccccEEcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccHEcccccEEEEEcccccccccccHHHHHHHcccccccccccccccccccEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MNMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKdvegssylvNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVessphesaytlPQAIYSAKLLTTLVLngcrldeplIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSvskahklkNMVIVDYsrsselesivapslqqlTLVRVIVVAtcpnlkklhlseivLEDQEFHELIskfplledlsvsssqplervkFSSNLLKRVAFLFCRSLravdldtpnllsftfesvriptisisashqcpwnvFFVHehdvgdidNWYLKLKEFLGASNQIENLLINLRSVnirqmpfdleefknrspslpfqvgnmrlivgMEVPIQEYKNLMDGIFwicypknlylpkqfnASSQFIEWLLELLWNrnekcckscpikcwrhylkntktasflpngdarpinidnwrdrlpmlpdgylrerlptlpdgnfklnlewcfpehda
Flexible Loop (DISEMBL)
mnmitelqimdriselptFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFsvskahklkNMVIVDYSRSSELESIvapslqqltLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLeefknrspslpfqvgnMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKCCKSCPIKCWRHYLKntktasflpngdarpinidnwrdRLPMLPDGYLRERLPTLPDGNFKLNLewcfpehda
Low Complexity Region (SEG)
MNMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIewllellwNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDGYLRERLPTLPDGNFKLNLEWCFPEHDA
Disordered region (IsUnstruct)
*******QIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV*****LERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDGYLRERLPTLPDGNFKLNLEWCF*****
Disordered Region (DISOPRED)
MNMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDGYLRERLPTLPDGNFKLNLEWC******
Disordered Region (DISEMBL)
MNMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDGYLRERLPTLPDGNFKLNLEWCFPEHDA
Disordered Region (DISPRO)
*NMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDGYLRERLPTLPDGNFKLNLEWCFP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDGYLRERLPTLPDGNFKLNLEWCFPEHDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q9LJF9	434	F-box/FBD/LRR-repeat prot	yes	no	0.259	0.311	0.319	2e-08
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.286	0.320	0.284	8e-07
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.286	0.326	0.278	1e-06
Q84W80	481	F-box/LRR-repeat protein	no	no	0.255	0.276	0.293	2e-06
Q9FF58	388	FBD-associated F-box prot	no	no	0.332	0.445	0.281	2e-05
Q9FM93	439	FBD-associated F-box prot	no	no	0.167	0.198	0.359	3e-05
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.301	0.377	0.255	5e-05
Q9FLA2	438	Putative F-box/FBD/LRR-re	no	no	0.173	0.205	0.3	5e-05
Q8LF09	453	F-box/FBD/LRR-repeat prot	no	no	0.296	0.339	0.264	9e-05
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.167	0.207	0.333	0.0003

>sp|Q9LJF9|FDL44_ARATH F-box/FBD/LRR-repeat protein At3g26920 OS=Arabidopsis thaliana GN=At3g26920 PE=2 SV=3

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 6/141 (4%)

Query: 92  IGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLK 151
           IG+A G  +++L + V S      +  P ++Y+++ L TL L  C L +    + L SL+
Sbjct: 110 IGIAFGRQLRKLVLKVYSG---DWFKFPTSLYNSETLETLELYHCILIDVPFPVCLKSLR 166

Query: 152 NLSLQRV-YANEQMVHNLIAECCSLEDLSLRYT--LGLKFFSVSKAHKLKNMVIVDYSRS 208
            L+L  V + N++ V NL+A C SLE+L +  T  L +K F+++     +  VIV+Y   
Sbjct: 167 TLNLHEVEFVNDESVVNLLAGCISLENLVIHQTTDLNVKTFTIAVPSLQRLTVIVEYYEE 226

Query: 209 SELESIVAPSLQQLTLVRVIV 229
             +  +  PSL+ L +  +IV
Sbjct: 227 FSVFVVNTPSLKYLKIEGIIV 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 55.8 bits (133), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 2/151 (1%)

Query: 77  LVVDV-EGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG 135
           LV+D+ + +   VD WI  A+   V+ L + V    +   Y  P   Y +  L  L +  
Sbjct: 96  LVMDLNDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTL 155

Query: 136 CRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKA 194
              D  P  A++  SL+NL+L+     ++ +HN+++ C  LE L+L     L+   +SK+
Sbjct: 156 DFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKS 215

Query: 195 HKLKNMVIVDYSRSSELESIVAPSLQQLTLV 225
             L+ + I    R +   +IVAP +  L L 
Sbjct: 216 PNLRRLDINRQYRRTGPIAIVAPHIYYLRLT 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 77  LVVDVEGSS-SLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG 135
           LV+D+  ++   VD WI  A+   V+ L + V    +   Y  P   Y +  L  L +  
Sbjct: 95  LVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTL 154

Query: 136 CRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKA 194
              D  P   ++  SL+NL+L+     ++ +HN+++ C  LE L+L     L+   +SK+
Sbjct: 155 DFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKS 214

Query: 195 HKLKNMVIVDYSRSSELESIVAPSLQQLTLV 225
             L+ + I    R +   +IVAP +  L L 
Sbjct: 215 PNLRRLDINQQYRRTGPVAIVAPHIYYLRLT 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 88  VDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLN-GCRLD----EPL 142
           +D WI  A+   V+ L + ++    E  Y +P+ +Y    L  L L+ GC+ D     P 
Sbjct: 126 IDSWINFAMSRNVENLSLYLD----EDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPK 181

Query: 143 IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVI 202
            +++  SLKNLSL     +++ +  +++ C  LE L L +   LK   +SK+ +L  + I
Sbjct: 182 CSVSWTSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI 241

Query: 203 VDYSRSSELESIVAPSLQQLTLV 225
               R  E   +VAP ++ L L+
Sbjct: 242 TRRCR-MEPTQLVAPHIRCLRLI 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF58|FBD30_ARATH FBD-associated F-box protein At5g60610 OS=Arabidopsis thaliana GN=At5g60610 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 33/206 (16%)

Query: 91  WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVL--NGCRLDEPLIAINLN 148
           W G+A+ + ++EL I   S        LP+++Y+ K L TL L   G R+D P   + L 
Sbjct: 88  WGGIAISHCLRELRIDFFSHYANPYVILPRSLYTCKSLVTLKLLGLGIRVDVPR-DVCLP 146

Query: 149 SLKNLSLQRVYANEQMVHNLIAECCS-LEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSR 207
           SLK L LQ V  +E+    L+  CC  LEDL +                     + D ++
Sbjct: 147 SLKTLLLQCVAYSEEDPLRLLLSCCPVLEDLVIE--------------------LDDANQ 186

Query: 208 SSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEI-----VLEDQE-FHELISKFPLL 261
           + +   ++ P+LQ L+L    + A+C + + L ++       V +D+E F+ LI   P L
Sbjct: 187 NVKALVVIVPTLQCLSLK---IPASCSDERYLIVTPSLKYFKVEDDREIFNALIENMPEL 243

Query: 262 EDLSVSSSQPLERVKFSSNLLKRVAF 287
           E+  +  +Q +E +  S   +KR+  
Sbjct: 244 EEADIYVTQHIETLLESVTSVKRLTL 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM93|FBD38_ARATH FBD-associated F-box protein At5g56380 OS=Arabidopsis thaliana GN=At5g56380 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 91  WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSL 150
           W+G+AV  G+ EL +    S +    +LP+++Y+ + L  L L    LD P + + L SL
Sbjct: 101 WVGIAVKRGLMELKLKYTDSYYPKRSSLPRSLYTCETLVVLKLKKGYLDVPDL-VCLRSL 159

Query: 151 KNLSLQRV-YANEQMVHNLIAECCSLEDL 178
           K LSL+ + Y+N   +  L+A C  LE+L
Sbjct: 160 KTLSLRDMNYSNASCLLRLLASCPVLEEL 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 39/196 (19%)

Query: 2   NMITELQIMD--RISELPTFWKEK---------DEELQKEFDELKLIDNNLVQFRNELKL 50
           N++T L I D  R S L + W+ K         DE+     ++  +++ NLV+F   + L
Sbjct: 18  NILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVETNLVRFITGVLL 77

Query: 51  ----GIQKWILLVRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIV 106
                I K+ L    K                         +D+W+     NG+KEL + 
Sbjct: 78  LHQGPIHKFQLSTSFKQCRPD--------------------IDQWLLFLSRNGIKELVLK 117

Query: 107 VESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVH 166
           +     E  + +P  +++   LT L L  C  D P      + LK+L+L ++    +++ 
Sbjct: 118 L----GEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIE 173

Query: 167 NLIAECCSLEDLSLRY 182
           +LI+ C  LE LSL Y
Sbjct: 174 SLISGCPLLEFLSLSY 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA2|FDL34_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1

 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%)

Query: 91  WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSL 150
           WI   V  G++ L +     P  +   +P  I  +K L +L L    LD P   ++L  L
Sbjct: 96  WIATVVDRGIQHLDVTATDCPPWTIDFMPANICKSKTLVSLKLVNVGLDTPKFVVSLPCL 155

Query: 151 KNLSLQRVYANEQMVHNLIAECCSLEDLSL 180
           K + L+ ++ +  +  NLI+ C  LEDL++
Sbjct: 156 KIMHLEDIFYSPLIAENLISGCPVLEDLTI 185

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160 OS=Arabidopsis thaliana GN=At4g00160 PE=2 SV=2

 Score = 48.9 bits (115), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 91  WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSL 150
           W+G+A    ++EL +V   +   +A+  P ++ +   L TL L    L +    + + SL
Sbjct: 109 WVGIAFSRHLRELVLVAADTGTGTAFKFPSSLCTCNTLETLRLVLLILVDISSPVVMKSL 168

Query: 151 KNLSLQRV-YANEQMVHNLIAECCSLEDLSL--RYTLGLKFFSVSKAHKLKNMVIVDYSR 207
           + L L+ V Y +E  + NL++ C  LE+L +       ++ F++ +   LK + I D   
Sbjct: 169 RTLHLELVSYKDESSIRNLLSGCPILEELLVIRGEDSDIEVFTIDEVPSLKRLTINDDHD 228

Query: 208 SSELESIV--APSLQQLTLVRVIVVATCPNLKKLHLSEI 244
             E    V  APSL+ L +  +     C N  +L  + I
Sbjct: 229 GQEFWGYVINAPSLKYLLIEDLRCPGFCLNAPELMEANI 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 3/90 (3%)

Query: 91  WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTL-VLNGCRLDEPLIAINLNS 149
           WIG A+   +++L I + +S ++++++LP ++Y++  L TL ++N   LD P  ++ L S
Sbjct: 93  WIGFALTRRLRQLKINIRTSSNDASFSLPSSLYTSDTLETLRLINFVLLDVP-SSVCLPS 151

Query: 150 LKNLSLQRV-YANEQMVHNLIAECCSLEDL 178
           LK L L+ V Y ++  + +L+  C +LE+L
Sbjct: 152 LKVLHLKTVDYEDDASLPSLLFGCPNLEEL 181

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
224121624	528	predicted protein [Populus trichocarpa]	0.817	0.804	0.306	5e-46
224119688	563	f-box family protein [Populus trichocarp	0.763	0.705	0.307	2e-37
225442254	520	PREDICTED: putative F-box protein At3g44	0.732	0.732	0.315	2e-34
297743071	552	unnamed protein product [Vitis vinifera]	0.732	0.690	0.315	3e-34
147833276	521	hypothetical protein VITISV_011919 [Viti	0.721	0.719	0.315	4e-34
124359451	469	hypothetical protein MtrDRAFT_AC149039g1	0.8	0.886	0.304	3e-27
357502437	518	F-box/LRR-repeat protein [Medicago trunc	0.778	0.781	0.303	3e-26
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.665	0.737	0.288	9e-25
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.665	0.737	0.286	3e-24
357503353	557	F-box/LRR-repeat protein [Medicago trunc	0.715	0.667	0.290	2e-19

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 142/463 (30%), Positives = 229/463 (49%), Gaps = 38/463 (8%)

Query: 24  DEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDVEG 83
           DE  Q     +  +D ++ +F  + K  +QK+ L + L D+E SS+L             
Sbjct: 66  DEYRQMLTKFMNYVDTSIFRF-CKYKFSMQKFKLFLVLPDLELSSHL------------- 111

Query: 84  SSSLVDKWIGLAVGNGVKELHIVVESSPH---ESAYTLPQAIYSAKLLTTLVLNGCRLD- 139
                DKW+   + NG KE+   ++   +   +  Y++P AI++AK +T L L GC +  
Sbjct: 112 -----DKWVQKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKL 166

Query: 140 EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKN 199
           E    I L+SL+ L+L+ V  ++ ++  ++  C  LED+SLR+  GLK   V +  +LK 
Sbjct: 167 EESFCIKLHSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKK 226

Query: 200 MVIVDYSRSSELESIVAPSLQQL-------TLVRVIVVATCPNLKKLHLSEIVLEDQEFH 252
             I  +    E   I +PSL+         ++  ++ V  C  LK L LS   + +    
Sbjct: 227 FEIYSHLSKPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQ 286

Query: 253 ELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVR 312
           +L+ KF +LE L V     L++VK SS  LK +    C ++  ++++TPNLLS  +    
Sbjct: 287 DLVPKFHVLESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSV 346

Query: 313 IPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMP 372
           +P   I+A   C W V F   + +  +  WY+ LKEFL   NQ+  L + +    I    
Sbjct: 347 VPVSLINAP-SCHWQVEFSLMNTLDIL--WYMTLKEFLAKLNQLVYLHVYVYLTTIMS-S 402

Query: 373 FDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQ 432
            +LE+  N +   P+ V N+ L V    PI  Y N MDG+F+   PKNL++ +  +   +
Sbjct: 403 LNLEDLSNNAS--PYVVDNVVLTVHSASPIMTYANFMDGLFFFSRPKNLFI-RSTDEQKR 459

Query: 433 FIEWLLELLWNRNEKCCKSCPIKCWRHYLKNTKTASFLPNGDA 475
           ++E+L      R   CC    +KCWRH LK  K  SF+ + D 
Sbjct: 460 YVEYLCGFS-KRALSCCNHRKVKCWRHDLKEVKLGSFVESADG 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/433 (30%), Positives = 219/433 (50%), Gaps = 36/433 (8%)

Query: 85  SSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG-CRLDEPLI 143
           +S  D  + LA   GV E  +  ++  H   Y LP+A+ SA+ +T L LNG  +L  P  
Sbjct: 134 TSRADHLLELATKCGVYEFDLNFQNISH---YCLPRALLSAEEITVLRLNGNYKLSLPRD 190

Query: 144 AINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIV 203
           AIN  SL+ LSL  V  +E ++ NLI  C  +E L+L Y  G+K   +S   KLK + + 
Sbjct: 191 AINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEVN 250

Query: 204 DYSRSSELESIVAPSLQQLTLVRVIV-------VATCPNLKKLHL-----SEIVLEDQEF 251
           +     E   I  PSL+       +V       +  C NL+ L L     +E++   Q F
Sbjct: 251 EGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVI--GQVF 308

Query: 252 HELISKFPLLEDLSVSS-SQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFES 310
            +LI++FP L+ L+++  +  + R+K S+  L+++  L+  +L  V + +P+L SF   +
Sbjct: 309 QDLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQ-LWSSALTKVTITSPSLHSFKHFT 367

Query: 311 VRIPTISISASHQCPWNVFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQ 370
              P  S  +  Q       +H H      + +L+L+E+LG  NQI  L + +  V IR 
Sbjct: 368 YGFP--SAFSLDQSSLQKATLHVHKGALYSSDFLQLREYLGNFNQIRRLTLRINYVGIRF 425

Query: 371 MPFDLEEFKNRS-PSLPFQVGNMRLIV-------GMEVPIQEYKNLMDGIFWICYPKNLY 422
           +P   E   N S P+LP  + +++L +       G    +++Y++++DG+ W+C+P+ + 
Sbjct: 426 IP---ETLNNISIPALP-DIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVCHPETIL 481

Query: 423 LPKQFNASSQFIEWLLELLWNRNEK--CCKSCPIKCWRHYLKNTKTASFLPNGDARPINI 480
           L   +++ + FI+ L E L    EK  CC S  IKCWRH LK+ +      N +A+    
Sbjct: 482 LISGWSSENLFIQILCEKLMQGGEKQHCCTSSHIKCWRHDLKDIQIEHLQRNAEAKAFTC 541

Query: 481 DNWRDRLPMLPDG 493
               + LP L  G
Sbjct: 542 GTLLESLPNLARG 554

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 132/418 (31%), Positives = 206/418 (49%), Gaps = 37/418 (8%)

Query: 80  DVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD 139
           D+E S SL+D WI  A+   VKEL + +        Y LP  I+S   +T L L  CRL 
Sbjct: 98  DIE-SESLIDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRL- 155

Query: 140 EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKN 199
           E    ++L +L+ L L+++  +EQ +  LI+ C  +EDL +     LK   VS    L  
Sbjct: 156 EICGDVDLPALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHR 215

Query: 200 MVIVDYSRSSELESIVAPSLQ------QLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHE 253
           +V+        +E I APSLQ      Q +L+  +V      L++L L +  + +     
Sbjct: 216 LVVTCCYNLRRIE-IDAPSLQYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQN 274

Query: 254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDL--DTPNLLSFTFESV 311
           L+S  P LE L + S++ L+R++ S + LKR+        R   L  D PNL SFT+   
Sbjct: 275 LVSGVPNLERLEIDSTR-LQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGY 333

Query: 312 RIPTIS-ISASHQCPWNVFFVHEHDVGDIDNWY-LKLKEFLGASN--QIENLLINLRSVN 367
           R+P  S IS+ +        +H  +  D  +++ L+LKEF   S   Q+ NLLI  +   
Sbjct: 334 RMPLTSMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEEL 393

Query: 368 IRQMPFDLEEFKNRSPSLP-FQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQ 426
           I  +P  L       PS P + + ++ LIV        ++ ++D + W+C+P+ L     
Sbjct: 394 I--IPRKLRPI----PSPPVYDIKHLHLIVYY---CSRFQYIIDRMLWMCHPQTL----S 440

Query: 427 FNASSQFIEWLLELLWNRNE--KCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDN 482
              S++F++ L     N+ E  KCC SCP KCWRHYL++ +      +GD   + ID 
Sbjct: 441 IETSAKFLKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQI-----DGDESRLEIDQ 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/418 (31%), Positives = 206/418 (49%), Gaps = 37/418 (8%)

Query: 80  DVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD 139
           D+E S SL+D WI  A+   VKEL + +        Y LP  I+S   +T L L  CRL 
Sbjct: 130 DIE-SESLIDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRL- 187

Query: 140 EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKN 199
           E    ++L +L+ L L+++  +EQ +  LI+ C  +EDL +     LK   VS    L  
Sbjct: 188 EICGDVDLPALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHR 247

Query: 200 MVIVDYSRSSELESIVAPSLQ------QLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHE 253
           +V+        +E I APSLQ      Q +L+  +V      L++L L +  + +     
Sbjct: 248 LVVTCCYNLRRIE-IDAPSLQYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQN 306

Query: 254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDL--DTPNLLSFTFESV 311
           L+S  P LE L + S++ L+R++ S + LKR+        R   L  D PNL SFT+   
Sbjct: 307 LVSGVPNLERLEIDSTR-LQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGY 365

Query: 312 RIPTIS-ISASHQCPWNVFFVHEHDVGDIDNWY-LKLKEFLGASN--QIENLLINLRSVN 367
           R+P  S IS+ +        +H  +  D  +++ L+LKEF   S   Q+ NLLI  +   
Sbjct: 366 RMPLTSMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEEL 425

Query: 368 IRQMPFDLEEFKNRSPSLP-FQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQ 426
           I  +P  L       PS P + + ++ LIV        ++ ++D + W+C+P+ L     
Sbjct: 426 I--IPRKLRPI----PSPPVYDIKHLHLIVYY---CSRFQYIIDRMLWMCHPQTL----S 472

Query: 427 FNASSQFIEWLLELLWNRNE--KCCKSCPIKCWRHYLKNTKTASFLPNGDARPINIDN 482
              S++F++ L     N+ E  KCC SCP KCWRHYL++ +      +GD   + ID 
Sbjct: 473 IETSAKFLKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQI-----DGDESRLEIDQ 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 203/402 (50%), Gaps = 27/402 (6%)

Query: 80  DVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD 139
           D+E S SL+D WI  A+   VKEL + +        Y LP  I+S   +T L L  CRL 
Sbjct: 98  DIE-SESLIDSWIDAALERKVKELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRL- 155

Query: 140 EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKN 199
           E    I+L +L+ L L+++  +EQ +  LI+ C  +EDL +    GL+   VS    L  
Sbjct: 156 EICGDIDLPALRKLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHR 215

Query: 200 MVIVDYSRSSELESIVAPSLQQLT-----LVRVIVVATCPNLKKLHLSEIVLEDQEFHEL 254
           + ++       +E I APSLQ L      L   +V+  C  L++L L +  + +     L
Sbjct: 216 LEVICCYNLRRIE-IDAPSLQHLVYHCGRLPCDMVLTPCEFLRELILHDPHITNDFLQNL 274

Query: 255 ISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFC--RSLRAVDLDTPNLLSFTFESVR 312
            S FP LE L + S++ L+R++ S + LKR+       +    + +D PNL SFT+   R
Sbjct: 275 DSGFPNLERLEIDSTR-LQRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYR 333

Query: 313 IP-TISISASHQCPWNVFFVHEHDVGDIDNWYL-KLKEFLGASN--QIENLLINLRSVNI 368
           +P T +IS+ +        +H  +  D  ++++ +LKEF   S   Q+ NLLI  +   I
Sbjct: 334 MPLTSTISSMNTSSLREAEIHFRNYNDYSHFFIPQLKEFFEKSKNCQVINLLIKSKEELI 393

Query: 369 RQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFN 428
             +P  L      SP + + + ++ L V        ++ ++D + W+C+P+ L +    N
Sbjct: 394 --IPRKLRPIL--SPPV-YDIKHLYLRVSY---CSRFQYIIDRMLWMCHPQTLSILSGTN 445

Query: 429 ASSQFIEWLLELLWNRNE--KCCKSCPIKCWRHYLKNTKTAS 468
              +F++ L     N+ E  KCC SC IKCWRHYLK+ +  S
Sbjct: 446 V--RFLKVLYNKFRNKEENPKCCTSCSIKCWRHYLKDVQIDS 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359451|gb|ABN05895.1| hypothetical protein MtrDRAFT_AC149039g12v2 [Medicago truncatula]

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 230/473 (48%), Gaps = 57/473 (12%)

Query: 52  IQKWILLV--RLKDVEGSSYLVNKWTALVVDVEGSSSL---VDKWIGLAVGNGVKELHIV 106
           IQ +I  V  RL     +  ++ K+   V + E  S +   +D W+ LA   GV+ +H+ 
Sbjct: 14  IQNYIYYVNTRLLRFYDNGLVIKKFKLAVYNGERFSYMLKDIDLWLKLASECGVEGIHLY 73

Query: 107 VESS-PHESAYTLPQAIYSAKLLTTLVL-NGCRLDEPLI--AINLNSLKNLSLQRVYA-N 161
           +      +  Y LP+ +   K +T LVL  G ++D   +  +I   SL+ LSL+ V + +
Sbjct: 74  LPYGLDQDECYVLPKGVIEVKSITELVLMGGIKVDTSFMNHSIKFFSLRVLSLKHVLSRD 133

Query: 162 EQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQ 221
           E  + +LI+ C  +E ++LR+   +K  S+    KLK + +       +   I AP L++
Sbjct: 134 ENAIEHLISCCPLIEHITLRFVDNMKSLSIHGLLKLKTVKV----EGIQEVYIDAPYLEK 189

Query: 222 LTLV-------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLER 274
           L            I    C NLK L L   ++ ++ F EL  KFP LE L + S    E+
Sbjct: 190 LRFCPDDFFAPYKIGFDRCQNLKYLSLESCIIANKWFLELFPKFPFLESLELDSCTMSEK 249

Query: 275 VKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRI----PTISI--SASHQCPWNV 328
           +  SS  LK +   FC  ++ +++D PNLLSF + SV      P IS   S+S    +  
Sbjct: 250 INISSVQLKVLEISFCSDMKEINIDAPNLLSFVYYSVGCGSSDPIISYLRSSSQLKVYMN 309

Query: 329 FFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPF-DLEE---FKNRSPS 384
           FF+      D  +    L+EF+  + + +N+L +L S+ IR+ PF D+++   F+  SP 
Sbjct: 310 FFI------DYYHHLCNLREFV-QNIKPQNVLSSL-SIYIRK-PFEDVQQPVVFQASSP- 359

Query: 385 LPFQVGNMRLIVGMEVPIQE--YKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLW 442
            P  + ++ LI    VP  E  + ++++ +   C P  + L      S  FIE+L E L 
Sbjct: 360 -PPSIKHLHLIC---VPQSETLFSSIVNILLSSCCPAFISLNPH---SKAFIEFLYETLI 412

Query: 443 NR-NEKC-CKSCPIKCWRHYLKNTKTASFLPNGDARPINIDNWRDRLPMLPDG 493
            R  + C C S   KCW H LKN K  S +   D    NID ++  L +LP G
Sbjct: 413 ERKGDDCLCSSSDTKCWWHGLKNVKVISSMKIDD----NID-FKTILELLPIG 460

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502437|ref|XP_003621507.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496522|gb|AES77725.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 223/461 (48%), Gaps = 56/461 (12%)

Query: 52  IQKWILLV--RLKDVEGSSYLVNKWTALVVDVEGSSSL---VDKWIGLAVGNGVKELHIV 106
           IQ +I  V  RL     +  ++ K+   V + E  S +   +D W+ LA   GV+ +H+ 
Sbjct: 14  IQNYIYYVNTRLLRFYDNGLVIKKFKLAVYNGERFSYMLKDIDLWLKLASECGVEGIHLY 73

Query: 107 VESS-PHESAYTLPQAIYSAKLLTTLVL-NGCRLDEPLI--AINLNSLKNLSLQRVYA-N 161
           +      +  Y LP+ +   K +T LVL  G ++D   +  +I   SL+ LSL+ V + +
Sbjct: 74  LPYGLDQDECYVLPKGVIEVKSITELVLMGGIKVDTSFMNHSIKFFSLRVLSLKHVLSRD 133

Query: 162 EQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQ 221
           E  + +LI+ C  +E ++LR+   +K  S+    KLK + +       +   I AP L++
Sbjct: 134 ENAIEHLISCCPLIEHITLRFVDNMKSLSIHGLLKLKTVKV----EGIQEVYIDAPYLEK 189

Query: 222 LTLV-------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLER 274
           L            I    C NLK L L   ++ ++ F EL  KFP LE L + S    E+
Sbjct: 190 LRFCPDDFFAPYKIGFDRCQNLKYLSLESCIIANKWFLELFPKFPFLESLELDSCTMSEK 249

Query: 275 VKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRI----PTISI--SASHQCPWNV 328
           +  SS  LK +   FC  ++ +++D PNLLSF + SV      P IS   S+S    +  
Sbjct: 250 INISSVQLKVLEISFCSDMKEINIDAPNLLSFVYYSVGCGSSDPIISYLRSSSQLKVYMN 309

Query: 329 FFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPF-DLEE---FKNRSPS 384
           FF+      D  +    L+EF+  + + +N+L +L S+ IR+ PF D+++   F+  SP 
Sbjct: 310 FFI------DYYHHLCNLREFV-QNIKPQNVLSSL-SIYIRK-PFEDVQQPVVFQASSP- 359

Query: 385 LPFQVGNMRLIVGMEVPIQE--YKNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLW 442
            P  + ++ LI    VP  E  + ++++ +   C P  + L      S  FIE+L E L 
Sbjct: 360 -PPSIKHLHLIC---VPQSETLFSSIVNILLSSCCPAFISLNPH---SKAFIEFLYETLI 412

Query: 443 NR-NEKC-CKSCPIKCWRHYLKNTKTASFLPNGDARPINID 481
            R  + C C S   KCW H LKN K  S +   D    NID
Sbjct: 413 ERKGDDCLCSSSDTKCWWHGLKNVKVISSMKIDD----NID 449

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 184/367 (50%), Gaps = 21/367 (5%)

Query: 84  SSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLI 143
           S  +VD+WI   + +GV+EL IVV +  +   Y LPQ +++ + LT L +  C+L   L 
Sbjct: 92  SMVVVDRWIDYVLESGVQELEIVV-TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLD 150

Query: 144 AINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIV 203
              L S+K++SL  V+A ++ V  L++ C  ++ + L   LGL+   + + ++L  M + 
Sbjct: 151 GYKLLSMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQ 210

Query: 204 DYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKF 258
           + S   E  +  A +LQ            I +++C NLK L LS + + D  F+   S+F
Sbjct: 211 NNSGLYEFGT-KAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEF 269

Query: 259 PLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISI 318
           PLLE L++S    LE ++ SS+ LK+     C S+  VD+DTP L    F S  + + S+
Sbjct: 270 PLLEILALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEF-SGDVISFSL 328

Query: 319 SASHQCPWNVFFVHEHDVGDIDN-WYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEE 377
           +A      ++    E      DN W +K  EFL   N +++L +  ++     +P +L E
Sbjct: 329 NAPALSQADI----ELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRE 384

Query: 378 FKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWL 437
               SP    +   +R+I  +  P    K+L+  + WI  P+    P+     S F + +
Sbjct: 385 -TFGSPLYGVKHLKLRIIKPLFSP--SLKDLVKALLWIA-PQ----PQTIAVESGFGKKI 436

Query: 438 LELLWNR 444
           L+ ++ +
Sbjct: 437 LKFVYEK 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 183/367 (49%), Gaps = 21/367 (5%)

Query: 84  SSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLI 143
           S  +VD+WI   + +GV+EL IVV +  +   Y LPQ +++ + LT L +  C+L   L 
Sbjct: 92  SMVVVDRWIDYVLESGVQELEIVV-TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLD 150

Query: 144 AINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIV 203
              L S+K++SL  V+A ++ V  L++ C  ++ + L   LGL+   + + ++L  M + 
Sbjct: 151 GYKLLSMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQ 210

Query: 204 DYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKF 258
           + S   E  +  A +LQ            I +++C NLK L LS + + D  F+   S+F
Sbjct: 211 NNSGLYEFGT-KAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEF 269

Query: 259 PLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISI 318
           PLLE L++S    LE ++ SS+ LK+     C S+  VD+D P L    F S  + + S+
Sbjct: 270 PLLEILALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEF-SGDVISFSL 328

Query: 319 SASHQCPWNVFFVHEHDVGDIDN-WYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEE 377
           +A      ++    E      DN W +K  EFL   N +++L +  ++     +P +L E
Sbjct: 329 NAPALSQADI----ELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRE 384

Query: 378 FKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDGIFWICYPKNLYLPKQFNASSQFIEWL 437
               SP    +   +R+I  +  P    K+L+  + WI  P+    P+     S F + +
Sbjct: 385 -TFGSPLYGVKHLKLRIIKPLFSP--SLKDLVKALLWIA-PQ----PQTIAVESGFGKKI 436

Query: 438 LELLWNR 444
           L+ ++ +
Sbjct: 437 LKFVYEK 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503353|ref|XP_003621965.1| F-box/LRR-repeat protein [Medicago truncatula] gi|357503387|ref|XP_003621982.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496980|gb|AES78183.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496997|gb|AES78200.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 188/417 (45%), Gaps = 45/417 (10%)

Query: 85  SSLVDKWIGLAVGNGVKELHIVVESSP------HESAYTLPQAIYSAKLLTTLVL-NGCR 137
           S  VD W+  A G+GV+ + + +   P      H   Y LP  +  AK LT +VL  G R
Sbjct: 120 SKHVDLWLKSASGSGVEVVELCLPCGPNYIEEGHGKCYVLPTGVIEAKSLTKVVLKGGIR 179

Query: 138 LDEPLI--AINLNSLKNLSLQRVY-ANEQMVHNLIAECCSLEDLSLRYTL------GLKF 188
           +D+  +  +I   SL+ LSL  V   +E  + +LI+ C  +E ++L++        G+K 
Sbjct: 180 VDQAFMNQSIKFFSLRVLSLWIVLLEDEHAIEHLISCCPFIEHITLKHCSVLSPGGGVKL 239

Query: 189 FSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVA-------TCPNLKKLHL 241
                 H L  +  VD     E+  I  PSL+ L     ++ A       +C NLK L L
Sbjct: 240 MKSLSMHGLPKLKTVDVHGIQEV-YIDVPSLEYLYYCHDVLNAPYKIHFDSCRNLKGLDL 298

Query: 242 SEI---VLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDL 298
             +    + D+ F EL SKFP LE L        E +  SS  LK +    C +++ V++
Sbjct: 299 FSLEGNTITDKWFLELFSKFPFLERLKFVKCTMSETINISSVQLKVLELSGCHNMKEVNI 358

Query: 299 DTPNLLS--FTFESVRI-PTIS-ISASHQCPWNV-FFVHEHDVGDIDNWYLKLKEFLGAS 353
           D PNLLS  +  ++  + P IS + +S +   +V  ++   D+G+       LKEFL  +
Sbjct: 359 DAPNLLSCEYIIDTQHLEPIISFVRSSSKLKVDVQIYIDYLDLGN-------LKEFL-QN 410

Query: 354 NQIENLLINLR--SVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEYKNLMDG 411
            + EN+L +L      + +  F+   F+  SP  P  V ++ L    +        L   
Sbjct: 411 IKPENVLTSLSLFIFELTEDEFNPAVFQVSSP--PPSVKHLHLHTFPKKETLYSSLLSIL 468

Query: 412 IFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNEKC-CKSCPIKCWRHYLKNTKTA 467
           +   C+            S +FIE+  E L  R + C C S    CW H LKN K A
Sbjct: 469 LSSCCFATISMRMHPCFCSREFIEFFYETLMRRKDDCFCSSSDTNCWWHGLKNLKVA 525

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
TAIR|locus:2082657	373	AT3G54910 "AT3G54910" [Arabido	0.415	0.579	0.280	6.4e-11
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.455	0.509	0.256	8.4e-09
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.457	0.521	0.25	2.9e-08
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.415	0.449	0.240	8.7e-08
TAIR|locus:5019474764	306	AT3G26922 "AT3G26922" [Arabido	0.359	0.611	0.297	2.5e-07
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.359	0.446	0.265	1.4e-06
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.325	0.406	0.282	1e-05
TAIR|locus:2161098	439	AT5G56380 "AT5G56380" [Arabido	0.428	0.507	0.266	1.2e-05
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.434	0.504	0.278	2.6e-05
TAIR|locus:2155327	438	AT5G44950 "AT5G44950" [Arabido	0.253	0.301	0.282	2.8e-05

TAIR|locus:2082657 AT3G54910 "AT3G54910" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 65/232 (28%), Positives = 107/232 (46%)

Query:    70 LVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLT 129
             ++  +   ++D + +   +  W+ +AV + ++EL ++  S P E    LP  +Y+ K L 
Sbjct:    34 VIESFRLYLIDSKCTPENIKMWVVIAVSHCLRELEVIYSSYP-EKPNILPSNLYTCKSLV 92

Query:   130 TLVLNG-CRLDEPLIAINLNSLKNLSLQRV-YANEQMVHNLIAECCSLEDLSLRYTLGLK 187
              L L G  RLD P +A  L SLK L L  V Y NE  +H L++ C  LEDL +   L   
Sbjct:    93 ILELCGEIRLDVPRMAF-LPSLKTLQLHSVRYLNEDSLHRLLSNCPVLEDLLVDLLLSDS 151

Query:   188 FFSVSKAHKLKNMVIVDYSRSSELESIV--APSLQQLTLV------RVIVVATCPNLKKL 239
                ++       ++ +    S E++ IV   PSL+   L+         +V   PNL + 
Sbjct:   152 MEKLTVVVPSLQILSLFIPHSYEIDGIVIETPSLKYFKLIDHNSKSHYCLVKNMPNLIE- 210

Query:   240 HLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCR 291
               ++I +E      LI     ++ LS+ S Q +    F  N LK +    C+
Sbjct:   211 --ADIDVELHSIKSLIGSITSVKRLSICS-QAMYDGGFVFNQLKHLKLCRCK 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 64/250 (25%), Positives = 115/250 (46%)

Query:    77 LVVDVEGSS-SLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG 135
             LV+D+  ++   VD WI  A+   V+ L + V    +   Y  P   Y +  L  L +  
Sbjct:    96 LVMDLNDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTL 155

Query:   136 CRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKA 194
                D  P  A++  SL+NL+L+     ++ +HN+++ C  LE L+L     L+   +SK+
Sbjct:   156 DFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKS 215

Query:   195 HKLKNMVIV-DYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEI-VLEDQEFH 252
               L+ + I   Y R+  + +IVAP +  L L      +T  ++  L  + + ++ D+   
Sbjct:   216 PNLRRLDINRQYRRTGPI-AIVAPHIYYLRLTYSSTPSTIVDVSSLSEANLNIISDRLLS 274

Query:   253 ELIS-KFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTF--E 309
              L + ++  +    +S    ++R+     +L+    L    LR V   T  + + T   E
Sbjct:   275 PLTADRYQTMALEMLSKFHNVKRLTVGETILQ---ILSLAELRGVPFPTLKVQTLTVKTE 331

Query:   310 SVR--IPTIS 317
              VR  IP IS
Sbjct:   332 FVRSVIPGIS 341

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 62/248 (25%), Positives = 108/248 (43%)

Query:    77 LVVDVEGSS-SLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG 135
             LV+D+  ++   VD WI  A+   V+ L + V    +   Y  P   Y +  L  L +  
Sbjct:    95 LVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTL 154

Query:   136 CRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKA 194
                D  P   ++  SL+NL+L+     ++ +HN+++ C  LE L+L     L+   +SK+
Sbjct:   155 DFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKS 214

Query:   195 HKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHEL 254
               L+ + I    R +   +IVAP +  L L      +T  ++  L  + + +       L
Sbjct:   215 PNLRRLDINQQYRRTGPVAIVAPHIYYLRLTYSSTPSTIVDVSSLSEANLTIISSLLSPL 274

Query:   255 ISK-FPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTF--ESV 311
              +  +  +    +S    ++R+     LL+    L    LR V   T  + + T   E V
Sbjct:   275 TADGYQTMALEMLSKFHNVKRLTVGETLLQ---ILSLAELRGVPFPTLKVQTLTVKTEFV 331

Query:   312 R--IPTIS 317
             R  IP IS
Sbjct:   332 RSVIPGIS 339

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 56/233 (24%), Positives = 106/233 (45%)

Query:    88 VDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLN-GCRLD----EPL 142
             +D WI  A+   V+ L + ++    E  Y +P+ +Y    L  L L+ GC+ D     P 
Sbjct:   126 IDSWINFAMSRNVENLSLYLD----EDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPK 181

Query:   143 IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVI 202
              +++  SLKNLSL     +++ +  +++ C  LE L L +   LK   +SK+ +L  + I
Sbjct:   182 CSVSWTSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI 241

Query:   203 VDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISK 257
                 R  E   +VAP ++ L L+       +V  +  +  +L ++   + D +      +
Sbjct:   242 TRRCRM-EPTQLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADFHQ 300

Query:   258 FPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFES 310
               +++ L     Q +E++   +N LK ++    R +    L    L+  T  S
Sbjct:   301 TMVVKMLE--KCQNVEKLTLGANFLKMLSLAELRGVSFPKLKAKALILETMIS 351

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474764 AT3G26922 "AT3G26922" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 60/202 (29%), Positives = 103/202 (50%)

Query:    88 VDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAIN 146
             V  WIG+A    V++L + VES   + ++  P  +Y+ + L +L L    L D P  A  
Sbjct:   103 VGMWIGIAYARHVRDLVLHVESV--KGSFIFPTGLYNCETLESLTLRSWVLVDVPSPAC- 159

Query:   147 LNSLKNLSLQRV-YANEQMVHNLIAECCSLEDLSLRY--TLGLKFFSVSKAHKLKNMVIV 203
             L SL+ L L+ V Y  +  V+NL++ C +LE+L +     L ++ F+++    L+ + I 
Sbjct:   160 LKSLRTLRLENVDYKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIA-VPSLQRLTIY 218

Query:   204 DYSRSSELESIV--APSLQQLTLVRVIVVATC--PNLKKLHLSEIVLEDQEFHE-LISKF 258
             D +        V  APSL+ L +     + +C   N  +L  + I+   +  +E L+   
Sbjct:   219 DDNDGEYCTGYVINAPSLKYLKIDGFKALESCLIENAPELVEATIMNVSKIINEKLLETL 278

Query:   259 PLLEDLSVSSSQPLERVKFSSN 280
               ++ LS++ S PLE +KFS N
Sbjct:   279 TSVKRLSLALS-PLE-LKFSCN 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 53/200 (26%), Positives = 102/200 (51%)

Query:    91 WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTL-VLNGCRLDEPLIAINLNS 149
             WIG A+   +++L I + +S ++++++LP ++Y++  L TL ++N   LD P  ++ L S
Sbjct:    93 WIGFALTRRLRQLKINIRTSSNDASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPS 151

Query:   150 LKNLSLQRV-YANEQMVHNLIAECCSLEDLSL-RYTLGLKF---FSVSKAHKLKNMVIVD 204
             LK L L+ V Y ++  + +L+  C +LE+L + R+   L+    F V    +L +M+  +
Sbjct:   152 LKVLHLKTVDYEDDASLPSLLFGCPNLEELFVERHDQDLEMDVTFVVPSLRRL-SMIDKN 210

Query:   205 YSRSSELESIVAPSLQQLTLV--RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE 262
             Y +      I  PSL+ L +    V  V    N+ +L  + + +     H+ +     + 
Sbjct:   211 YGQCDRYV-IDVPSLKYLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVR 269

Query:   263 DLSVSSSQPLERVKFSSNLL 282
              LS+  S  L  V   S ++
Sbjct:   270 QLSLCLS--LSEVMCPSGII 287

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 52/184 (28%), Positives = 89/184 (48%)

Query:     2 NMITELQIMD--RISELPTFWKEKDEELQK-EFDELKLIDNNLVQFRNELKLGIQKWILL 58
             N++T L I D  R S L + W+ K   L    FDE  +  +N    R  ++  + ++I  
Sbjct:    18 NILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSN---DRCVVETNLVRFITG 74

Query:    59 VRLKDVEGSSYLVNKWTALVVDVEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTL 118
             V L   +G    ++K+  L    +     +D+W+     NG+KEL  V++    E  + +
Sbjct:    75 VLLLH-QGP---IHKFQ-LSTSFKQCRPDIDQWLLFLSRNGIKEL--VLKLG--EGEFRV 125

Query:   119 PQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDL 178
             P  +++   LT L L  C  D P      + LK+L+L ++    +++ +LI+ C  LE L
Sbjct:   126 PACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFL 185

Query:   179 SLRY 182
             SL Y
Sbjct:   186 SLSY 189

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161098 AT5G56380 "AT5G56380" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 67/251 (26%), Positives = 119/251 (47%)

Query:    91 WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSL 150
             W+G+AV  G+ EL +    S +    +LP+++Y+ + L  L L    LD P + + L SL
Sbjct:   101 WVGIAVKRGLMELKLKYTDSYYPKRSSLPRSLYTCETLVVLKLKKGYLDVPDL-VCLRSL 159

Query:   151 KNLSLQRV-YANEQMVHNLIAECCSLEDLSLR---Y-TLGLKFFSVSKAHKLKNMVIVDY 205
             K LSL+ + Y+N   +  L+A C  LE+L ++   Y +  L F  +    K  + +    
Sbjct:   160 KTLSLRDMNYSNASCLLRLLASCPVLEELFIQQGYYDSCALSFKIILPCLKKLSYLPKRK 219

Query:   206 SRSSELE-SIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFH--ELISKFPLLE 262
              + S ++ S V+  +  L L         P+LK LH   IV     F   E+I+   +++
Sbjct:   220 KKYSGIDRSEVSGGISGLVL-------DAPSLKYLH---IVDRSGLFSVSEIININAVVK 269

Query:   263 -DLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISAS 321
               L V++S+P E++ +S   ++ +    C  L A ++  P  L  +F  ++   +    S
Sbjct:   270 ATLEVNASRP-EKLLYSLVSVEHIRL--C--LSATEVVYPVGLGSSFHKLKRLEVCTCKS 324

Query:   322 HQCPWNVFFVH 332
                 W   F+H
Sbjct:   325 E---WLDLFIH 332

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 70/251 (27%), Positives = 115/251 (45%)

Query:    76 ALVVDVEGSSSL--VDKWIGLAVGNGVKELHIVVESSPHES-AYTLPQAIYSAKLLTTLV 132
             +L +  EG +    V  WI  A   GV++L  V++S   E    TLP  ++S      ++
Sbjct:    93 SLHLSFEGRTDCLHVGIWIATAFARGVRKL--VLDSFYQEDQTVTLPSVLFSYNDSLEIL 150

Query:   133 LNGCRLDEPLIA-INLNSLKNLSLQRV-YANEQMVHNLIAECCSLEDLSL-RYT-LGLKF 188
                C +D    + + L SL+ L L +V + +E+ V NL+  C SL+DL + RY+   +  
Sbjct:   151 KLKCAIDLDFPSRVCLKSLRKLYLDQVHFKDEESVCNLLCGCPSLQDLVVHRYSNADVAT 210

Query:   189 FSVSKAHKLKNMVIVDYSRSSELES----IVAPSLQQLTLVRVIVVATCPNLKKLHLSEI 244
             F+++    L+ + I D  +     +    I AP L+ L +  VI + +C   K L L E 
Sbjct:   211 FTIASP-SLQRLTIEDLRQEGGYGNGSYVINAPGLKYLNINGVIDIESCLIDKALELEEA 269

Query:   245 VLEDQEFHELISKFPLLEDLSVSSS-----QPLERVKFSSNLLKRVAFLFCRSLRAVDLD 299
              + +      I+   +LE L+ +        PLE VK  +   K    L C  L   + +
Sbjct:   270 KISNVSG---ITNENILESLTSAKRLILHLSPLE-VKVPTG--KIFDQLGCLELLTHERE 323

Query:   300 TPNLLSFTFES 310
               NLLS   +S
Sbjct:   324 WWNLLSIMLDS 334

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155327 AT5G44950 "AT5G44950" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 39/138 (28%), Positives = 65/138 (47%)

Query:    91 WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSL 150
             WI   V  G++ L +     P  +   +P  I  +K L +L L    LD P   ++L  L
Sbjct:    96 WIATVVDRGIQHLDVTATDCPPWTIDFMPANICKSKTLVSLKLVNVGLDTPKFVVSLPCL 155

Query:   151 KNLSLQRVYANEQMVHNLIAECCSLEDLSL--RYTLGLKFFSVSKAHKLKNMVIV-DYSR 207
             K + L+ ++ +  +  NLI+ C  LEDL++   +   L F  V  +  LKN  +  D+  
Sbjct:   156 KIMHLEDIFYSPLIAENLISGCPVLEDLTIVRNHEDFLNFLRVM-SQTLKNFRLTFDWGM 214

Query:   208 SSELESIV--APSLQQLT 223
              S   S+   AP L+ ++
Sbjct:   215 GSNDFSVEIDAPGLKYMS 232

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1460040 hypothetical protein (528 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.27
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.16
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.07
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.42
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.32
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.13
KOG4341	483	consensus F-box protein containing LRR [General fu	98.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.02
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.97
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.87
KOG4341	483	consensus F-box protein containing LRR [General fu	97.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.72
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.07
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.98
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.66
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.54
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.39
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.34
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.03
PLN03150	623	hypothetical protein; Provisional	94.59
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.52
smart00579	72	FBD domain in FBox and BRCT domain containing plan	94.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.03
PRK15386	426	type III secretion protein GogB; Provisional	94.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.53
PLN03150	623	hypothetical protein; Provisional	93.23
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	93.16
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.96
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	91.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.02
PRK15386	426	type III secretion protein GogB; Provisional	90.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.08
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	80.44

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.27  E-value=2.3e-11  Score=142.33  Aligned_cols=211  Identities=15%  Similarity=0.099  Sum_probs=124.5

Q ss_pred             CCceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      ..++.|++...    .....+|..++ .+++|++|+|++|.+........+++|++|+|+++.+.. .++..+.+++.|+
T Consensus        93 ~~L~~L~Ls~n----~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~  167 (968)
T PLN00113         93 PYIQTINLSNN----QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLK  167 (968)
T ss_pred             CCCCEEECCCC----ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCC
Confidence            46666666543    11235677666 678888888887765321123567888888888777632 2334466778888


Q ss_pred             eeeeeccCCc--ceeccccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecccc
Q 039643          177 DLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIV  245 (520)
Q Consensus       177 ~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~  245 (520)
                      .|+|.+|...  ..-.+.++++|+.|++.+|....  +...-..++|++|.+..       +..+.++++|++|+++++.
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            8888877522  12234457788888887776321  11122456777776641       2345667777777777766


Q ss_pred             cchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCC
Q 039643          246 LEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       246 ~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~  314 (520)
                      +++. +...++++++|+.|.++++......+   ..+.+|++|+++.|....   ..+..+++|+.|++.++.+.
T Consensus       248 l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        248 LTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             eccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            5442 33446677777777777665322111   124567777776543221   34456666777776666443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.16  E-value=1.4e-10  Score=135.63  Aligned_cols=82  Identities=21%  Similarity=0.075  Sum_probs=49.1

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC--CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD--EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~--~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      .++++|++...    .....+|..+..+++|++|+|++|.+.  .|..+.++++|++|+|.++.+.+ .++.-+.+++.|
T Consensus       212 ~~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L  286 (968)
T PLN00113        212 KSLKWIYLGYN----NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKL  286 (968)
T ss_pred             CCccEEECcCC----ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec-cCchhHhhccCc
Confidence            46777776553    122356777777777777777777552  35566677777777777766522 122223445666


Q ss_pred             ceeeeeccC
Q 039643          176 EDLSLRYTL  184 (520)
Q Consensus       176 E~L~L~~c~  184 (520)
                      +.|++++|.
T Consensus       287 ~~L~Ls~n~  295 (968)
T PLN00113        287 ISLDLSDNS  295 (968)
T ss_pred             CEEECcCCe
Confidence            666666553

>PLN03210 Resistant to P

Probab=99.07  E-value=1.2e-09  Score=129.48  Aligned_cols=192  Identities=19%  Similarity=0.226  Sum_probs=87.6

Q ss_pred             ccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--cccc
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SVSK  193 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I~~  193 (520)
                      .+|..+ ...+|+.|+|.++.+.. +.....+++|+.|+|+++..- ..++. ++.+++||.|+|.+|..+..+  .+..
T Consensus       603 ~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~  679 (1153)
T PLN03210        603 CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQY  679 (1153)
T ss_pred             CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhc
Confidence            445443 45566666666655432 444455666666666554320 00111 344566666666665443321  2333


Q ss_pred             ccccceEEEecccCCCC-ceeeeCCceeEEEeccccccC----CCCCcceEEecccccch--------------------
Q 039643          194 AHKLKNMVIVDYSRSSE-LESIVAPSLQQLTLVRVIVVA----TCPNLKKLHLSEIVLED--------------------  248 (520)
Q Consensus       194 ~~~Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~~~~~~~----~l~~L~~L~L~~~~~~~--------------------  248 (520)
                      +++|+.|++.+|..... ...++.++|++|.+.+...+.    ...+|++|+++.+.+..                    
T Consensus       680 L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~  759 (1153)
T PLN03210        680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS  759 (1153)
T ss_pred             cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccch
Confidence            45555555555532100 011233444444443211111    11233333333322110                    


Q ss_pred             --------hHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchhHH--hcCCCCccEeEeccc
Q 039643          249 --------QEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLRAV--DLDTPNLLSFTFESV  311 (520)
Q Consensus       249 --------~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~~l--L~~~P~L~~L~l~~~  311 (520)
                              ..........++|+.|.|++|..+..++   ..+++|+.|+|.+|.++..+  ..++++|+.|+++++
T Consensus       760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c  835 (1153)
T PLN03210        760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC  835 (1153)
T ss_pred             hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence                    0000111234567777777665433222   13456777777777665411  124677777777765

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.74  E-value=1.5e-08  Score=106.46  Aligned_cols=151  Identities=19%  Similarity=0.192  Sum_probs=100.7

Q ss_pred             CcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC--Ccceecccccc
Q 039643          119 PQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL--GLKFFSVSKAH  195 (520)
Q Consensus       119 P~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~--~l~~l~I~~~~  195 (520)
                      +..++.+++|+.+.|..+.+.. |........|+.|+|.++.+..-.-+ -++..|.||.|+|+.+.  .+..-+.....
T Consensus        95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN~is~i~~~sfp~~~  173 (873)
T KOG4194|consen   95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRNLISEIPKPSFPAKV  173 (873)
T ss_pred             HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence            3456778899999999998855 55555556699999999877321111 23556999999999874  23333444457


Q ss_pred             ccceEEEecccCCC-Cceee-eCCceeEEEec-------cccccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643          196 KLKNMVIVDYSRSS-ELESI-VAPSLQQLTLV-------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV  266 (520)
Q Consensus       196 ~Lk~L~I~~~~~~~-~~~~i-~aP~L~~L~l~-------~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L  266 (520)
                      ++++|++.++.... +.-.+ ...+|.+|.+.       ....|.++|+|+.|+|..|.+.... ---|+++++||.|.+
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhh
Confidence            89999999887421 11111 12367777774       1335678999999999877764311 124678888888888


Q ss_pred             ccccc
Q 039643          267 SSSQP  271 (520)
Q Consensus       267 ~~~~~  271 (520)
                      ..+..
T Consensus       253 qrN~I  257 (873)
T KOG4194|consen  253 QRNDI  257 (873)
T ss_pred             hhcCc
Confidence            77653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.67  E-value=4.9e-09  Score=110.08  Aligned_cols=209  Identities=18%  Similarity=0.143  Sum_probs=114.3

Q ss_pred             CCceEEEEEecCCCCCcccccC-cccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecC---hHHHHHH---
Q 039643           98 NGVKELHIVVESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYAN---EQMVHNL---  168 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~---~~~l~~L---  168 (520)
                      -++++|+|....     ...+- .++-++.+|..|+|+.+++.. |. .+..+|.|+.|+|..+++.   .-.|+.+   
T Consensus       173 ~ni~~L~La~N~-----It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl  247 (873)
T KOG4194|consen  173 VNIKKLNLASNR-----ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL  247 (873)
T ss_pred             CCceEEeecccc-----ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence            467888887641     22222 233345677888888776644 43 3455777777777766541   1111111   


Q ss_pred             -----------------HhcCCCcceeeeeccCC--cceeccccccccceEEEecccCCCCceee----eCCceeEEEec
Q 039643          169 -----------------IAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESI----VAPSLQQLTLV  225 (520)
Q Consensus       169 -----------------ls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i----~aP~L~~L~l~  225 (520)
                                       +-+|..+|+|+|..+.-  +..-.+-|+.+|+.|+++.+..  ..+.+    .+++|+.|.++
T Consensus       248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI--~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI--QRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh--heeecchhhhcccceeEecc
Confidence                             22344444444444321  1111122456666666666542  22332    35677777665


Q ss_pred             c-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc---cccccc---ccccccEEEeecCCc
Q 039643          226 R-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP---LERVKF---SSNLLKRVAFLFCRS  292 (520)
Q Consensus       226 ~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~---l~~~~~---~f~~L~~L~L~~c~~  292 (520)
                      .       +.++..+..|++|.|+.|.++. .-...+.++++|++|+|..+..   ++....   ..+.|++|.+.+ ++
T Consensus       326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nq  403 (873)
T KOG4194|consen  326 SNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQ  403 (873)
T ss_pred             ccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ce
Confidence            1       2234556667777777666532 2234566777788887777664   222111   245677777776 33


Q ss_pred             hh----HHhcCCCCccEeEecccCCCC
Q 039643          293 LR----AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       293 l~----~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      +.    .-+...++||.|++.++.+.+
T Consensus       404 lk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  404 LKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             eeecchhhhccCcccceecCCCCccee
Confidence            32    555677788888887775544

>PLN03210 Resistant to P

Probab=98.65  E-value=7.1e-08  Score=114.64  Aligned_cols=210  Identities=20%  Similarity=0.214  Sum_probs=128.1

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEecc-ccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGC-RLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c-~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .++++|++...     ....+|..+..+++|+.|+|+++ .+...+....+++|++|+|.+|..- ..++.-+..++.|+
T Consensus       611 ~~L~~L~L~~s-----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~  684 (1153)
T PLN03210        611 ENLVKLQMQGS-----KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLE  684 (1153)
T ss_pred             cCCcEEECcCc-----cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCC
Confidence            56777777543     23456777777888888888876 3444345677888888888887541 12334456778888


Q ss_pred             eeeeeccCCcceeccc-cccccceEEEecccCCC--Cc-------------------eeeeCCceeEEEeccc-------
Q 039643          177 DLSLRYTLGLKFFSVS-KAHKLKNMVIVDYSRSS--EL-------------------ESIVAPSLQQLTLVRV-------  227 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~-~~~~Lk~L~I~~~~~~~--~~-------------------~~i~aP~L~~L~l~~~-------  227 (520)
                      .|++.+|..++.+... ++++|+.|.+++|....  +.                   ..+..++|++|.+...       
T Consensus       685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        685 DLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             EEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence            8888888765543221 36777777777774210  00                   0112233333333210       


Q ss_pred             -------cccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccccccccccEEEeecCCchhHHhc
Q 039643          228 -------IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSNLLKRVAFLFCRSLRAVDL  298 (520)
Q Consensus       228 -------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~~L~~L~L~~c~~l~~lL~  298 (520)
                             ......++|++|+++++..... +...++++++|+.|.|++|..+.  +.+..+++|++|++++|..+..+..
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence                   0011235777888876543322 33447788999999999887654  3334567888888888876654333


Q ss_pred             CCCCccEeEecccCCC
Q 039643          299 DTPNLLSFTFESVRIP  314 (520)
Q Consensus       299 ~~P~L~~L~l~~~~~~  314 (520)
                      ..++|+.|++.++.+.
T Consensus       844 ~~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        844 ISTNISDLNLSRTGIE  859 (1153)
T ss_pred             cccccCEeECCCCCCc
Confidence            4456777777666544

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.62  E-value=8.1e-08  Score=97.48  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--------CcccCCCCCCCEEEecceecCh---HHHH
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--------PLIAINLNSLKNLSLQRVYANE---QMVH  166 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--------p~~~~~l~sLk~L~L~~v~~~~---~~l~  166 (520)
                      .++++|++....-.......++..+...++|++|+++++.+..        +..+..+++|+.|+|+++.+..   ..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            4588888876421111123466666677788999888865541        2234567889999998887732   3344


Q ss_pred             HHHhcCCCcceeeeeccCCcc----ee--ccccc-cccceEEEecccC
Q 039643          167 NLIAECCSLEDLSLRYTLGLK----FF--SVSKA-HKLKNMVIVDYSR  207 (520)
Q Consensus       167 ~Lls~CP~LE~L~L~~c~~l~----~l--~I~~~-~~Lk~L~I~~~~~  207 (520)
                      .+..+ +.|++|++.+|....    .+  .+..+ ++|+.|++.+|..
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  149 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL  149 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence            45555 679999998885321    11  12234 7888888888874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.7e-09  Score=105.38  Aligned_cols=176  Identities=25%  Similarity=0.283  Sum_probs=91.3

Q ss_pred             ccEEEEeccccCC---CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee----ccccccccceE
Q 039643          128 LTTLVLNGCRLDE---PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF----SVSKAHKLKNM  200 (520)
Q Consensus       128 L~~L~L~~c~l~~---p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l----~I~~~~~Lk~L  200 (520)
                      |++|+|++-.+..   ..-...+..||.|+|.+.+++|. +..-++.-.+|+.|+|+.|+|+...    -++.+..|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5555665532211   01233455566666666655432 2222344455666666666554421    12335556666


Q ss_pred             EEecccCCCCcee--e--eCCceeEEEecccc----------ccCCCCCcceEEecc-cccchhHHHHHHhCCcccceee
Q 039643          201 VIVDYSRSSELES--I--VAPSLQQLTLVRVI----------VVATCPNLKKLHLSE-IVLEDQEFHELISKFPLLEDLS  265 (520)
Q Consensus       201 ~I~~~~~~~~~~~--i--~aP~L~~L~l~~~~----------~~~~l~~L~~L~L~~-~~~~~~~~~~ll~~l~~L~~L~  265 (520)
                      .++.|....+.+.  +  -.++|..|++.+..          -...||+|.+|+|++ ..++++ +...+.+++.|+.|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeee
Confidence            6666553221110  0  12444444443210          125688888888875 345443 444556788888888


Q ss_pred             ccccccccccc----cccccccEEEeecCCc---hhHHhcCCCCccE
Q 039643          266 VSSSQPLERVK----FSSNLLKRVAFLFCRS---LRAVDLDTPNLLS  305 (520)
Q Consensus       266 L~~~~~l~~~~----~~f~~L~~L~L~~c~~---l~~lL~~~P~L~~  305 (520)
                      ++.|..+.+..    ...+.|.+|++.+|-.   +.-+.+.+|+|+.
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            88887654322    1245778887777633   2244456666643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.42  E-value=2.7e-07  Score=93.68  Aligned_cols=206  Identities=17%  Similarity=0.142  Sum_probs=121.3

Q ss_pred             CCceEEEEEecCCC--CCcccccCcccccCCCccEEEEeccccC--CCcccCCC---CCCCEEEecceecChHHHH---H
Q 039643           98 NGVKELHIVVESSP--HESAYTLPQAIYSAKLLTTLVLNGCRLD--EPLIAINL---NSLKNLSLQRVYANEQMVH---N  167 (520)
Q Consensus        98 ~~VkeL~L~~~~~~--~~~~~~LP~~l~~~~sL~~L~L~~c~l~--~p~~~~~l---~sLk~L~L~~v~~~~~~l~---~  167 (520)
                      .+++++.+......  ......++..+..+++|+.|+|++|.+.  .+..+..+   ++|+.|+++++.+++....   .
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            45888887654211  0111234556667889999999998764  22333333   4599999999988544443   3


Q ss_pred             HHhcC-CCcceeeeeccCCc----cee--ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEE
Q 039643          168 LIAEC-CSLEDLSLRYTLGL----KFF--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLH  240 (520)
Q Consensus       168 Lls~C-P~LE~L~L~~c~~l----~~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~  240 (520)
                      .+..+ +.|+.|++.+|...    ..+  .+.++++|+.|++.++.........    +       ...+..+++|++|+
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----l-------~~~l~~~~~L~~L~  199 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA----L-------AEGLKANCNLEVLD  199 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH----H-------HHHHHhCCCCCEEe
Confidence            45566 99999999999632    111  1334578999999888642110000    0       00123345777777


Q ss_pred             ecccccchhH---HHHHHhCCcccceeecccccccc----cccc----ccccccEEEeecCCch-------hHHhcCCCC
Q 039643          241 LSEIVLEDQE---FHELISKFPLLEDLSVSSSQPLE----RVKF----SSNLLKRVAFLFCRSL-------RAVDLDTPN  302 (520)
Q Consensus       241 L~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~~l~----~~~~----~f~~L~~L~L~~c~~l-------~~lL~~~P~  302 (520)
                      ++++.+++..   +...+..+++|+.|++++|..-.    ....    ...+|++|.+.+|.-.       ...+...|+
T Consensus       200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence            7766655432   33445666777777777765311    1111    1256777777766431       144455577


Q ss_pred             ccEeEecccCCC
Q 039643          303 LLSFTFESVRIP  314 (520)
Q Consensus       303 L~~L~l~~~~~~  314 (520)
                      |+.++++++.+.
T Consensus       280 L~~l~l~~N~l~  291 (319)
T cd00116         280 LLELDLRGNKFG  291 (319)
T ss_pred             ccEEECCCCCCc
Confidence            888888777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.32  E-value=2.6e-08  Score=105.27  Aligned_cols=256  Identities=18%  Similarity=0.134  Sum_probs=152.7

Q ss_pred             cccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC-cceecccc
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG-LKFFSVSK  193 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~-l~~l~I~~  193 (520)
                      ..+|..+|.++.|+.|+|+.+.+. +|.....=.++-+|.|+++.++. .-..++-+..-|-.|+|+++.- .-+..+..
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence            457888999999999999998874 46666677788888998887621 1122333445566777777641 11223444


Q ss_pred             ccccceEEEecccCCCCceeeeCCc---eeEEEec--------cccccCCCCCcceEEecccccchhHHHHHHhCCcccc
Q 039643          194 AHKLKNMVIVDYSRSSELESIVAPS---LQQLTLV--------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE  262 (520)
Q Consensus       194 ~~~Lk~L~I~~~~~~~~~~~i~aP~---L~~L~l~--------~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~  262 (520)
                      +..|++|.++++... ....-..|+   |+.|.++        .+.++.++.||.+++++.+....  ++.-+-++++|+
T Consensus       172 L~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~Lr  248 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLR  248 (1255)
T ss_pred             HhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhh
Confidence            678888888877521 000112344   3444443        24567888999999999877642  445667899999


Q ss_pred             eeecccccccc-ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCC--Ccc--cccccCCCcEEE-Eec
Q 039643          263 DLSVSSSQPLE-RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIP--TIS--ISASHQCPWNVF-FVH  332 (520)
Q Consensus       263 ~L~L~~~~~l~-~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~--~~~--~~~l~~~~L~v~-~~~  332 (520)
                      .|.|+++..-+ ..+ ....+|+.|.++. +.+.   .-+-.+|+|+.|...++.+.  +++  +..+.+  |++. ..+
T Consensus       249 rLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~--Levf~aan  325 (1255)
T KOG0444|consen  249 RLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ--LEVFHAAN  325 (1255)
T ss_pred             eeccCcCceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh--hHHHHhhc
Confidence            99999876411 111 1234677777765 3332   34455677777766665433  220  111111  1110 011


Q ss_pred             cccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643          333 EHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                      +        ..++++.-+-.+..|+.|.+.+ |.       -+ .+|.+..-|| +|+.|.+..
T Consensus       326 N--------~LElVPEglcRC~kL~kL~L~~-Nr-------Li-TLPeaIHlL~-~l~vLDlre  371 (1255)
T KOG0444|consen  326 N--------KLELVPEGLCRCVKLQKLKLDH-NR-------LI-TLPEAIHLLP-DLKVLDLRE  371 (1255)
T ss_pred             c--------ccccCchhhhhhHHHHHhcccc-cc-------ee-echhhhhhcC-CcceeeccC
Confidence            1        1456677888888999999886 21       11 1355555566 777776664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.13  E-value=1.6e-05  Score=89.61  Aligned_cols=91  Identities=21%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      +-..|++...     ....+|..+.  ++|+.|.+.++.+.. |.   ..++|++|+|+++.+..  ++.   ..+.|+.
T Consensus       202 ~~~~LdLs~~-----~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~  266 (788)
T PRK15387        202 GNAVLNVGES-----GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE  266 (788)
T ss_pred             CCcEEEcCCC-----CCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence            4455555442     2346787665  378888888877643 32   35788888888887631  111   1356777


Q ss_pred             eeeeccCCcceeccccccccceEEEeccc
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYS  206 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~  206 (520)
                      |++.++. +..+.-. .++|++|.+.++.
T Consensus       267 L~Ls~N~-L~~Lp~l-p~~L~~L~Ls~N~  293 (788)
T PRK15387        267 LSIFSNP-LTHLPAL-PSGLCKLWIFGNQ  293 (788)
T ss_pred             eeccCCc-hhhhhhc-hhhcCEEECcCCc
Confidence            7776653 1111100 2345555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.10  E-value=7.8e-07  Score=90.68  Aligned_cols=267  Identities=17%  Similarity=0.192  Sum_probs=158.6

Q ss_pred             HHHHHHHHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccc-cCC---CcccCCCCCCCEEEecceec-Ch
Q 039643           88 VDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCR-LDE---PLIAINLNSLKNLSLQRVYA-NE  162 (520)
Q Consensus        88 v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~-l~~---p~~~~~l~sLk~L~L~~v~~-~~  162 (520)
                      |...+..+ ...+|+|.+...-  ....-.+-.....|+++++|.+.+|. ++.   -.....++.|+.|.|..|.. ++
T Consensus       129 V~~~~~Rc-gg~lk~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~  205 (483)
T KOG4341|consen  129 VENMISRC-GGFLKELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD  205 (483)
T ss_pred             eehHhhhh-ccccccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence            44444332 2457888887642  12222344445568888888888884 332   12345778888888888655 77


Q ss_pred             HHHHHHHhcCCCcceeeeeccCCcce----eccccccccceEEEecccCCCCc--eeeeC--CceeEEEeccc-----cc
Q 039643          163 QMVHNLIAECCSLEDLSLRYTLGLKF----FSVSKAHKLKNMVIVDYSRSSEL--ESIVA--PSLQQLTLVRV-----IV  229 (520)
Q Consensus       163 ~~l~~Lls~CP~LE~L~L~~c~~l~~----l~I~~~~~Lk~L~I~~~~~~~~~--~~i~a--P~L~~L~l~~~-----~~  229 (520)
                      ..+..+..+||+|++|.++.|..+..    ....|+..|+.+...+|......  ..+.+  +-+..+++...     .+
T Consensus       206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~  285 (483)
T KOG4341|consen  206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED  285 (483)
T ss_pred             HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH
Confidence            78888888888888888888864332    12335667777777777532111  11122  22222222111     01


Q ss_pred             ---c-CCCCCcceEEecc-cccchhHHHHHHhCCcccceeecccccccc-----ccccccccccEEEeecCCchh-----
Q 039643          230 ---V-ATCPNLKKLHLSE-IVLEDQEFHELISKFPLLEDLSVSSSQPLE-----RVKFSSNLLKRVAFLFCRSLR-----  294 (520)
Q Consensus       230 ---~-~~l~~L~~L~L~~-~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-----~~~~~f~~L~~L~L~~c~~l~-----  294 (520)
                         + ..+..|+.+..+. ..+++..+..+.+++++|+.|.+..|..+.     ..+...+.|+.|++..|....     
T Consensus       286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence               1 2366677777764 345555677888999999999999988643     333445689999888875432     


Q ss_pred             HHhcCCCCccEeEecccCCCCc-ccccccC--CCc---EE-EEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          295 AVDLDTPNLLSFTFESVRIPTI-SISASHQ--CPW---NV-FFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       295 ~lL~~~P~L~~L~l~~~~~~~~-~~~~l~~--~~L---~v-~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                      .+-.+||.|++|.++.+....- .+..+..  ++.   ++ +++..-..      .+..-+.+.+.+.||++.++-
T Consensus       366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i------~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI------TDATLEHLSICRNLERIELID  435 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc------hHHHHHHHhhCcccceeeeec
Confidence            5667899999999985532210 0111222  222   21 22222211      233457788899999988775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.10  E-value=1.7e-06  Score=86.52  Aligned_cols=171  Identities=18%  Similarity=0.233  Sum_probs=105.4

Q ss_pred             ccCCCCCCCEEEecceecC---hHHHHHHHhcCCCcceeeeeccCCc----ce-------e----ccccccccceEEEec
Q 039643          143 IAINLNSLKNLSLQRVYAN---EQMVHNLIAECCSLEDLSLRYTLGL----KF-------F----SVSKAHKLKNMVIVD  204 (520)
Q Consensus       143 ~~~~l~sLk~L~L~~v~~~---~~~l~~Lls~CP~LE~L~L~~c~~l----~~-------l----~I~~~~~Lk~L~I~~  204 (520)
                      ...+.|.|++|+|+++-|.   ...+..++++|..|++|.|.+|...    ..       +    .+..-++|+.+....
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            3567778999999998883   3567889999999999999999521    00       1    122357888888887


Q ss_pred             ccCCCCc------eeeeCCceeEEEecc----c-------cccCCCCCcceEEecccccchh---HHHHHHhCCccccee
Q 039643          205 YSRSSEL------ESIVAPSLQQLTLVR----V-------IVVATCPNLKKLHLSEIVLEDQ---EFHELISKFPLLEDL  264 (520)
Q Consensus       205 ~~~~~~~------~~i~aP~L~~L~l~~----~-------~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~l~~L~~L  264 (520)
                      ++.....      ..-..|.|+.+++..    +       ..+..|++|+.|+|.+|.++..   .+...+..+++|+.|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            7643211      111346777777641    1       1345677777777776666532   344566667777777


Q ss_pred             ecccccccc--------ccccccccccEEEeecCCchh-------HHhcCCCCccEeEecccCC
Q 039643          265 SVSSSQPLE--------RVKFSSNLLKRVAFLFCRSLR-------AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       265 ~L~~~~~l~--------~~~~~f~~L~~L~L~~c~~l~-------~lL~~~P~L~~L~l~~~~~  313 (520)
                      .+++|..-.        ...-.+++|+.|.+.+|..-.       .....-|.|++|.+.+|++
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            777776411        111235567777766643311       2223466777777777665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=4.2e-07  Score=88.94  Aligned_cols=186  Identities=21%  Similarity=0.266  Sum_probs=127.9

Q ss_pred             CCccEEEEeccccCCCc---ccCCC-CCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccce
Q 039643          126 KLLTTLVLNGCRLDEPL---IAINL-NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKN  199 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~p~---~~~~l-~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~  199 (520)
                      +...++++.....+.|.   .+.-| ..|+.|+|+...++...++.+++.|..|+.|.|.+..--.  ...|..-.+|++
T Consensus       159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~  238 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR  238 (419)
T ss_pred             CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence            34455555554444432   22222 3699999999888888999999999999999999875322  234555789999


Q ss_pred             EEEecccCCCC----ceeeeCCceeEEEeccc--------ccc-CCCCCcceEEecccc--cchhHHHHHHhCCccccee
Q 039643          200 MVIVDYSRSSE----LESIVAPSLQQLTLVRV--------IVV-ATCPNLKKLHLSEIV--LEDQEFHELISKFPLLEDL  264 (520)
Q Consensus       200 L~I~~~~~~~~----~~~i~aP~L~~L~l~~~--------~~~-~~l~~L~~L~L~~~~--~~~~~~~~ll~~l~~L~~L  264 (520)
                      |+++.|.....    .+.-++..|..|++.-.        +.+ .--++|+.|+|+++.  +....+..+...||+|..|
T Consensus       239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            99999975321    12335677888877511        111 124678888888632  3333466778889999999


Q ss_pred             ecccccccccc----ccccccccEEEeecCCchh----HHhcCCCCccEeEeccc
Q 039643          265 SVSSSQPLERV----KFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESV  311 (520)
Q Consensus       265 ~L~~~~~l~~~----~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~  311 (520)
                      +|+.|.++.+.    -..|+.|++|.++-|..+-    -.+...|.|..|++.|+
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            99998887542    2357789999998887653    33467888888888776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=7.7e-07  Score=91.12  Aligned_cols=190  Identities=21%  Similarity=0.136  Sum_probs=131.9

Q ss_pred             cCCCccEEEEeccccCCCc---ccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCc---ceeccccccc
Q 039643          124 SAKLLTTLVLNGCRLDEPL---IAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGL---KFFSVSKAHK  196 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l~~p~---~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l---~~l~I~~~~~  196 (520)
                      ..+.|++..|.++.+..+.   ....||.++.|+|+++-+ .-..+.+++...|+||.|+|+.+...   ......-++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3578899999998876533   577899999999999988 55678888999999999999988521   1111112789


Q ss_pred             cceEEEecccCCCC---ceeeeCCceeEEEeccc-------cccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643          197 LKNMVIVDYSRSSE---LESIVAPSLQQLTLVRV-------IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV  266 (520)
Q Consensus       197 Lk~L~I~~~~~~~~---~~~i~aP~L~~L~l~~~-------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L  266 (520)
                      ||+|.+.+|.....   .+....|+|+.|.+...       .+...+..|++|+|+.+.+-........+.+|.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            99999999985322   23456789998887532       123456779999998766533222345678899999998


Q ss_pred             ccccc--c-cc-c-----ccccccccEEEeecCCc-hh---HHhcCCCCccEeEecccCC
Q 039643          267 SSSQP--L-ER-V-----KFSSNLLKRVAFLFCRS-LR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       267 ~~~~~--l-~~-~-----~~~f~~L~~L~L~~c~~-l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      +.+..  + .+ .     ...|++|++|.+...+- -|   .-++..++|+-|.+..+.+
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            88764  1 11 1     24588999999876332 13   3345677777777665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.02  E-value=3e-06  Score=84.74  Aligned_cols=191  Identities=18%  Similarity=0.277  Sum_probs=130.3

Q ss_pred             cCCCccEEEEeccccCC------CcccCCCCCCCEEEecceec---ChHH------HHHHHhcCCCcceeeeeccC-C--
Q 039643          124 SAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYA---NEQM------VHNLIAECCSLEDLSLRYTL-G--  185 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~---~~~~------l~~Lls~CP~LE~L~L~~c~-~--  185 (520)
                      ...+++.|+|+|+.+..      ......-+.|+.-++++...   .+..      +..-+.+||.|+.|+|+++- +  
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            35678888888887643      12345566777777776532   1112      23336689999999999983 2  


Q ss_pred             -ccee--ccccccccceEEEecccCCCC---------------ceeeeCCceeEEEecc-----------ccccCCCCCc
Q 039643          186 -LKFF--SVSKAHKLKNMVIVDYSRSSE---------------LESIVAPSLQQLTLVR-----------VIVVATCPNL  236 (520)
Q Consensus       186 -l~~l--~I~~~~~Lk~L~I~~~~~~~~---------------~~~i~aP~L~~L~l~~-----------~~~~~~l~~L  236 (520)
                       ++.+  -|+.+..|+.|.+.+|..++.               ...-+.|.|+.+....           ...+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence             2211  144588999999999975431               0123578999999851           1134667999


Q ss_pred             ceEEecccccchh---HHHHHHhCCcccceeecccccccc-------ccccccccccEEEeecCCchh--------HHhc
Q 039643          237 KKLHLSEIVLEDQ---EFHELISKFPLLEDLSVSSSQPLE-------RVKFSSNLLKRVAFLFCRSLR--------AVDL  298 (520)
Q Consensus       237 ~~L~L~~~~~~~~---~~~~ll~~l~~L~~L~L~~~~~l~-------~~~~~f~~L~~L~L~~c~~l~--------~lL~  298 (520)
                      +++.+..+.+...   .+..-+..|++|+.|+|..+..-.       ..-..+++|+.|.+++|.--.        .+-.
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~  267 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE  267 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence            9999988766433   344567899999999999887511       122356789999999984311        5557


Q ss_pred             CCCCccEeEecccCCC
Q 039643          299 DTPNLLSFTFESVRIP  314 (520)
Q Consensus       299 ~~P~L~~L~l~~~~~~  314 (520)
                      ..|+|+.+.+.++.+.
T Consensus       268 ~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  268 SAPSLEVLELAGNEIT  283 (382)
T ss_pred             cCCCCceeccCcchhH
Confidence            7999999999888654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.00  E-value=1.6e-07  Score=99.46  Aligned_cols=215  Identities=20%  Similarity=0.160  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhCCceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHH
Q 039643           88 VDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMV  165 (520)
Q Consensus        88 v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l  165 (520)
                      +.+=+.+|  +|.-.|.|+..     ..-++|.++| .+..|-.|+|+++.++. ||....+..|++|.|+++.+..-.+
T Consensus       118 vP~~LE~A--Kn~iVLNLS~N-----~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL  190 (1255)
T KOG0444|consen  118 VPTNLEYA--KNSIVLNLSYN-----NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL  190 (1255)
T ss_pred             cchhhhhh--cCcEEEEcccC-----ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence            44444454  34445555443     3446676665 35667777888877754 7777777777777777776533333


Q ss_pred             HHHHhcCCCcceeeeeccCC-cc--eecccc-----------------------ccccceEEEecccCCCCceee-eCCc
Q 039643          166 HNLIAECCSLEDLSLRYTLG-LK--FFSVSK-----------------------AHKLKNMVIVDYSRSSELESI-VAPS  218 (520)
Q Consensus       166 ~~Lls~CP~LE~L~L~~c~~-l~--~l~I~~-----------------------~~~Lk~L~I~~~~~~~~~~~i-~aP~  218 (520)
                      .++ .+..+|+.|.+++... +.  +-++.+                       +++|++|.++++....-...+ .=.+
T Consensus       191 rQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~  269 (1255)
T KOG0444|consen  191 RQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWEN  269 (1255)
T ss_pred             hcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhh
Confidence            322 3334444444443311 00  112222                       455555555554421000000 0124


Q ss_pred             eeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc-cccccc-ccccccEEEeecC
Q 039643          219 LQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP-LERVKF-SSNLLKRVAFLFC  290 (520)
Q Consensus       219 L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~-l~~~~~-~f~~L~~L~L~~c  290 (520)
                      |++|+++.      +..+..++.|+.|.+.++..+-+.++.-++++.+|+.+...++.. +.|.+. .+..|++|.|.. 
T Consensus       270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-  348 (1255)
T KOG0444|consen  270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-  348 (1255)
T ss_pred             hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-
Confidence            44554431      223345556666666555544334444555666666666655543 334443 356677777754 


Q ss_pred             Cch-h--HHhcCCCCccEeEeccc
Q 039643          291 RSL-R--AVDLDTPNLLSFTFESV  311 (520)
Q Consensus       291 ~~l-~--~lL~~~P~L~~L~l~~~  311 (520)
                      +.+ .  .-+.-+|.|+.|++..+
T Consensus       349 NrLiTLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  349 NRLITLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             cceeechhhhhhcCCcceeeccCC
Confidence            332 2  44555777888888766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=2.8e-06  Score=87.13  Aligned_cols=161  Identities=18%  Similarity=0.171  Sum_probs=111.7

Q ss_pred             cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC--Ccce-ec-cccccccceEEEecccCCCCceeeeCC
Q 039643          142 LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL--GLKF-FS-VSKAHKLKNMVIVDYSRSSELESIVAP  217 (520)
Q Consensus       142 ~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~--~l~~-l~-I~~~~~Lk~L~I~~~~~~~~~~~i~aP  217 (520)
                      ..-.++..|+...|+++.+.......-...||++.+|+|+.+-  +... .. +..+|+|+.|.++.+......     .
T Consensus       115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~-----~  189 (505)
T KOG3207|consen  115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI-----S  189 (505)
T ss_pred             HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-----c
Confidence            3456889999999998887443433567789999999999872  2221 12 234899999999988642110     0


Q ss_pred             ceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccc--c-ccccccccccEEEeecCCchh
Q 039643          218 SLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPL--E-RVKFSSNLLKRVAFLFCRSLR  294 (520)
Q Consensus       218 ~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l--~-~~~~~f~~L~~L~L~~c~~l~  294 (520)
                      +.         .-..+++|+.|.|..|.++...+...+..+|+|+.|.+..+..+  . .....+..|+.|+|++.....
T Consensus       190 s~---------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~  260 (505)
T KOG3207|consen  190 SN---------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID  260 (505)
T ss_pred             cc---------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence            11         11356788888888888887778888889999999999887532  1 112235678888888744332


Q ss_pred             ----HHhcCCCCccEeEecccCCCCc
Q 039643          295 ----AVDLDTPNLLSFTFESVRIPTI  316 (520)
Q Consensus       295 ----~lL~~~P~L~~L~l~~~~~~~~  316 (520)
                          .....+|.|..|.++.++++.+
T Consensus       261 ~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  261 FDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             cccccccccccchhhhhccccCcchh
Confidence                5567788999998888877654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.87  E-value=3.7e-05  Score=86.90  Aligned_cols=197  Identities=14%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .+..+|.+...     ....+|..+.  ++|+.|+|++|.+.. |...  +++|++|+|.++.+..  ++.-+  .+.|+
T Consensus       178 ~~~~~L~L~~~-----~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~  244 (754)
T PRK15370        178 NNKTELRLKIL-----GLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQ  244 (754)
T ss_pred             cCceEEEeCCC-----CcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hcccc
Confidence            34566666543     2345666543  578999999987643 4432  4689999999887741  22111  25788


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc-C-CCCCcceEEecccccchhHHH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV-A-TCPNLKKLHLSEIVLEDQEFH  252 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~-~-~l~~L~~L~L~~~~~~~~~~~  252 (520)
                      .|+|++|.. ..+.-.-..+|+.|+++++....-...+ .++|++|.+.+.  ..+ . -.++|+.|++++|.++. .+.
T Consensus       245 ~L~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~  321 (754)
T PRK15370        245 EMELSINRI-TELPERLPSALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPE  321 (754)
T ss_pred             EEECcCCcc-CcCChhHhCCCCEEECcCCccCcccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCcccc-CCc
Confidence            999888752 2221111357888888876532100011 246777766421  011 0 11246666666555432 111


Q ss_pred             HHHhCCcccceeecccccccccccc-ccccccEEEeecCCchhHHh-cCCCCccEeEecccCCCC
Q 039643          253 ELISKFPLLEDLSVSSSQPLERVKF-SSNLLKRVAFLFCRSLRAVD-LDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       253 ~ll~~l~~L~~L~L~~~~~l~~~~~-~f~~L~~L~L~~c~~l~~lL-~~~P~L~~L~l~~~~~~~  315 (520)
                      .   -.++|+.|.+++|.. ..++. ..++|+.|+++++. +..+- .-.++|+.|+++++.+..
T Consensus       322 ~---l~~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        322 T---LPPGLKTLEAGENAL-TSLPASLPPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALTN  381 (754)
T ss_pred             c---ccccceeccccCCcc-ccCChhhcCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCCC
Confidence            1   124666776666542 11111 12466777766542 22000 112466777776665443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.73  E-value=4.3e-06  Score=85.40  Aligned_cols=187  Identities=21%  Similarity=0.277  Sum_probs=117.9

Q ss_pred             CCccEEEEeccc-cCC---CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCcceec----cccccc
Q 039643          126 KLLTTLVLNGCR-LDE---PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGLKFFS----VSKAHK  196 (520)
Q Consensus       126 ~sL~~L~L~~c~-l~~---p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~----I~~~~~  196 (520)
                      .-|+.|.|+||. +..   -....++|+...|.+..|.. ++..+.++-..|+.|+.|.+..|..++...    ..++++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            478899999983 332   12457899999999998876 888999998999999999999998765432    235899


Q ss_pred             cceEEEecccCCCC-c---eeeeCCceeEEEeccccc-----c----CCCCCcceEEecc-cccchhHHHHHHhCCcccc
Q 039643          197 LKNMVIVDYSRSSE-L---ESIVAPSLQQLTLVRVIV-----V----ATCPNLKKLHLSE-IVLEDQEFHELISKFPLLE  262 (520)
Q Consensus       197 Lk~L~I~~~~~~~~-~---~~i~aP~L~~L~l~~~~~-----~----~~l~~L~~L~L~~-~~~~~~~~~~ll~~l~~L~  262 (520)
                      |++|.++.|..... .   ..-.+.+++.+...+...     +    ..++.+.++++.. +.+++..+..+-.++..||
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            99999999973211 1   111222344433332111     1    2334444455433 4455555556666677777


Q ss_pred             eeecccccccc-----ccccccccccEEEeecCCchh-----HHhcCCCCccEeEecccC
Q 039643          263 DLSVSSSQPLE-----RVKFSSNLLKRVAFLFCRSLR-----AVDLDTPNLLSFTFESVR  312 (520)
Q Consensus       263 ~L~L~~~~~l~-----~~~~~f~~L~~L~L~~c~~l~-----~lL~~~P~L~~L~l~~~~  312 (520)
                      .|..++|..+.     ..+-..++|+.|.+.+|..+.     .+-.++|.|+.++..++.
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            77777776532     222334667777777776543     444667777777766553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.72  E-value=4.9e-06  Score=92.26  Aligned_cols=214  Identities=20%  Similarity=0.209  Sum_probs=121.6

Q ss_pred             ccHHHHHHHHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecC--h
Q 039643           86 SLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYAN--E  162 (520)
Q Consensus        86 ~~v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~--~  162 (520)
                      ..+..|+..+  .+|+.|.....     ....+|..++...+|+.|....|.+. .|+...++.+|++|+|..+.+.  .
T Consensus       254 ~~lp~wi~~~--~nle~l~~n~N-----~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  254 SNLPEWIGAC--ANLEALNANHN-----RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             hcchHHHHhc--ccceEecccch-----hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence            3455777754  35666666553     24677888888888888888888773 4778888999999999988761  1


Q ss_pred             HHHHHHHhcCCC-cceeeeeccCC--cceeccccccccceEEEecccCCCC--ceeeeCCceeEEEecc-------cccc
Q 039643          163 QMVHNLIAECCS-LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSE--LESIVAPSLQQLTLVR-------VIVV  230 (520)
Q Consensus       163 ~~l~~Lls~CP~-LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~--~~~i~aP~L~~L~l~~-------~~~~  230 (520)
                      +.+-..   -+. |+.|..+....  .....=...+.|+.|.+.++.....  ......++|+.|.+..       ...+
T Consensus       327 ~~~l~v---~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~  403 (1081)
T KOG0618|consen  327 DNFLAV---LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL  403 (1081)
T ss_pred             hHHHhh---hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence            111111   111 22222211110  0000000145555666665553211  1223456666666542       1124


Q ss_pred             CCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh--HHh--cCCCCccE
Q 039643          231 ATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR--AVD--LDTPNLLS  305 (520)
Q Consensus       231 ~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~--~lL--~~~P~L~~  305 (520)
                      .+++.|++|++++|..+.  +..-+..++.|++|..+++..+. |.-...++|+.++++. +++.  .+.  ...|+|+.
T Consensus       404 ~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~Lky  480 (1081)
T KOG0618|consen  404 RKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKY  480 (1081)
T ss_pred             hchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccce
Confidence            567778888888877643  33456677778888777766432 3333456777777753 5554  111  22367888


Q ss_pred             eEecccC
Q 039643          306 FTFESVR  312 (520)
Q Consensus       306 L~l~~~~  312 (520)
                      |+++|+.
T Consensus       481 LdlSGN~  487 (1081)
T KOG0618|consen  481 LDLSGNT  487 (1081)
T ss_pred             eeccCCc
Confidence            8888774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.72  E-value=0.00011  Score=83.05  Aligned_cols=192  Identities=18%  Similarity=0.148  Sum_probs=109.7

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .+++.|.+...     ....+|..   .++|++|+|++|.+.. |.   ..++|++|+|.++.+.  .++.+   .+.|.
T Consensus       222 ~~L~~L~L~~N-----~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~--~Lp~l---p~~L~  285 (788)
T PRK15387        222 AHITTLVIPDN-----NLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT--HLPAL---PSGLC  285 (788)
T ss_pred             cCCCEEEccCC-----cCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchh--hhhhc---hhhcC
Confidence            36788877654     23346643   4789999999987744 33   3579999999888763  23222   25677


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc--ccccCCC-CCcceEEecccccchhHHHH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR--VIVVATC-PNLKKLHLSEIVLEDQEFHE  253 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~--~~~~~~l-~~L~~L~L~~~~~~~~~~~~  253 (520)
                      .|++.++. +..+... .++|+.|+++++...  .+.-..++|+.|.+..  ...+..+ ++|+.|++++|.++.  +..
T Consensus       286 ~L~Ls~N~-Lt~LP~~-p~~L~~LdLS~N~L~--~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~--LP~  359 (788)
T PRK15387        286 KLWIFGNQ-LTSLPVL-PPGLQELSVSDNQLA--SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS--LPT  359 (788)
T ss_pred             EEECcCCc-ccccccc-ccccceeECCCCccc--cCCCCcccccccccccCccccccccccccceEecCCCccCC--CCC
Confidence            88887774 2322222 478888888887632  1111123566665542  1112222 368888888777653  111


Q ss_pred             HHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCCc
Q 039643          254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTI  316 (520)
Q Consensus       254 ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~~  316 (520)
                         ..++|+.|.++++. +..++....+|+.|+++++ .+..+-...++|+.|+++++.+..+
T Consensus       360 ---lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~LssI  417 (788)
T PRK15387        360 ---LPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSL  417 (788)
T ss_pred             ---CCcccceehhhccc-cccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCCCC
Confidence               23466677766654 2222222346777777653 2322222234677777777765543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.67  E-value=6.3e-06  Score=91.37  Aligned_cols=162  Identities=16%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             CCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEEecccCC-CCceeeeCCceeEEEec
Q 039643          148 NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQLTLV  225 (520)
Q Consensus       148 ~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~  225 (520)
                      .+|+.++++++.+.  .++..+..|++||.|....+.-.. ...|....+|+.|.+..+... .+.......+|++|.+.
T Consensus       241 ~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            46777777777663  344678888999988887765311 123333455555555555421 01111112234444432


Q ss_pred             c--------------------------------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccc-
Q 039643          226 R--------------------------------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPL-  272 (520)
Q Consensus       226 ~--------------------------------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l-  272 (520)
                      .                                ..+=.+++.|+.|++.+|.+++. +...+.++++||.|+|+++..- 
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc-chhhhccccceeeeeeccccccc
Confidence            0                                00012344455666666666543 3355666777777777665420 


Q ss_pred             ccc--ccccccccEEEeecCCc--hhHHhcCCCCccEeEecccC
Q 039643          273 ERV--KFSSNLLKRVAFLFCRS--LRAVDLDTPNLLSFTFESVR  312 (520)
Q Consensus       273 ~~~--~~~f~~L~~L~L~~c~~--l~~lL~~~P~L~~L~l~~~~  312 (520)
                      -+.  -..+..|+.|.|+|.+-  +..-.-+++.|++|..+++.
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc
Confidence            011  11234455555555211  11333445555555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.50  E-value=0.00011  Score=83.11  Aligned_cols=197  Identities=16%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .+++.|++...     ....+|..++  .+|+.|+|++|.+.. |...  .++|+.|+|+++.+..  ++.-+  ...|+
T Consensus       199 ~~L~~L~Ls~N-----~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~--LP~~l--~s~L~  265 (754)
T PRK15370        199 EQITTLILDNN-----ELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITE--LPERL--PSALQ  265 (754)
T ss_pred             cCCcEEEecCC-----CCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccCc--CChhH--hCCCC
Confidence            35777777553     2335776654  478888888886643 3322  3578888888877631  11111  24688


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc--CCCCCcceEEecccccchhHHH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV--ATCPNLKKLHLSEIVLEDQEFH  252 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~--~~l~~L~~L~L~~~~~~~~~~~  252 (520)
                      .|+++++. +..+.-.-.++|+.|++++|....-...+ .++|+.|.+...  ..+  .-.++|+.|.++++.++. ...
T Consensus       266 ~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-p~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~  342 (754)
T PRK15370        266 SLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHL-PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPA  342 (754)
T ss_pred             EEECcCCc-cCccccccCCCCcEEECCCCccccCcccc-hhhHHHHHhcCCccccCCccccccceeccccCCcccc-CCh
Confidence            88887653 32221111357888888877532100001 134555555320  011  123567777777666543 111


Q ss_pred             HHHhCCcccceeecccccccccccc-ccccccEEEeecCCchhHHhcC-CCCccEeEecccCCCC
Q 039643          253 ELISKFPLLEDLSVSSSQPLERVKF-SSNLLKRVAFLFCRSLRAVDLD-TPNLLSFTFESVRIPT  315 (520)
Q Consensus       253 ~ll~~l~~L~~L~L~~~~~l~~~~~-~f~~L~~L~L~~c~~l~~lL~~-~P~L~~L~l~~~~~~~  315 (520)
                      .+   .++|+.|.+++|.. ..++. ..++|++|+|++|. +..+... .+.|+.|+++++.+..
T Consensus       343 ~l---~~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~  402 (754)
T PRK15370        343 SL---PPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVR  402 (754)
T ss_pred             hh---cCcccEEECCCCCC-CcCChhhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCccc
Confidence            11   25778888877653 21111 12467778777643 2211111 1257777777776543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.46  E-value=4.1e-06  Score=76.05  Aligned_cols=58  Identities=22%  Similarity=0.279  Sum_probs=37.3

Q ss_pred             ccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeee
Q 039643          121 AIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSL  180 (520)
Q Consensus       121 ~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L  180 (520)
                      .+|.....+.|.|+.+.+.+ |+..+.+.+|+.|.++++.+.+  ++.-+++.|.|+.|.+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnv   86 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNV   86 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheec
Confidence            56777788888888887744 7777888888888887776521  2222344444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.40  E-value=0.00016  Score=67.30  Aligned_cols=128  Identities=18%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             cCCCccEEEEeccccCCCcccC-CCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--cc-ccccccce
Q 039643          124 SAKLLTTLVLNGCRLDEPLIAI-NLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SV-SKAHKLKN  199 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l~~p~~~~-~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I-~~~~~Lk~  199 (520)
                      .+..+++|+|.|+.+......+ .+.+|+.|+|+++.+..  ++ -+++++.|+.|.+.++.- ..+  .+ ..+|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence            3456788889888664433444 57888899988887631  11 144568888888887752 111  12 13678888


Q ss_pred             EEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecccc
Q 039643          200 MVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVSSS  269 (520)
Q Consensus       200 L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~~~  269 (520)
                      |.++++....         +..     ...+..+|+|+.|++.+|.++..  .-..++..+|+|+.|+-...
T Consensus        93 L~L~~N~I~~---------l~~-----l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   93 LYLSNNKISD---------LNE-----LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EE-TTS---S---------CCC-----CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EECcCCcCCC---------hHH-----hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            8887765210         000     11346788888888887776542  23356778888888876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.31  E-value=0.00014  Score=81.41  Aligned_cols=143  Identities=20%  Similarity=0.228  Sum_probs=97.7

Q ss_pred             CCccEEEEeccc-c--CCCc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643          126 KLLTTLVLNGCR-L--DEPL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV  201 (520)
Q Consensus       126 ~sL~~L~L~~c~-l--~~p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~  201 (520)
                      .+|++|+++|-. +  +.|. ...-||+|++|.+.+..+..++|.++..++|+|..|+++++.--.-..|+.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            578888888842 2  1122 34578999999999999966679999999999999999998521112345567777777


Q ss_pred             EecccCCCCc---eeeeCCceeEEEecc------c-------cccCCCCCcceEEecccccchhHHHHHHhCCcccceee
Q 039643          202 IVDYSRSSEL---ESIVAPSLQQLTLVR------V-------IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLS  265 (520)
Q Consensus       202 I~~~~~~~~~---~~i~aP~L~~L~l~~------~-------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~  265 (520)
                      +.+-.+....   ..++..+|+.|+++.      .       ..-..+|+|+.|+.++..++++.+..++..-|+|+...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            6655432211   134567777777752      0       01135888888888887777777777777777777776


Q ss_pred             ccc
Q 039643          266 VSS  268 (520)
Q Consensus       266 L~~  268 (520)
                      .-.
T Consensus       282 ~~~  284 (699)
T KOG3665|consen  282 ALD  284 (699)
T ss_pred             hhh
Confidence            543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.31  E-value=0.00018  Score=66.89  Aligned_cols=102  Identities=19%  Similarity=0.158  Sum_probs=38.1

Q ss_pred             CceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           99 GVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      +.++|+|....     ...+ ..+. .+.+|+.|+|++|.+..-..+..++.|++|+++++.+..-. +.+..+||+|+.
T Consensus        20 ~~~~L~L~~n~-----I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQ-----ISTI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--E
T ss_pred             ccccccccccc-----cccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCE
Confidence            46778886641     1122 2343 46899999999998865467788999999999999884211 123356899999


Q ss_pred             eeeeccC--Cccee-ccccccccceEEEecccC
Q 039643          178 LSLRYTL--GLKFF-SVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       178 L~L~~c~--~l~~l-~I~~~~~Lk~L~I~~~~~  207 (520)
                      |.+.++.  .+..+ .+..+|+|+.|++.++..
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            9999884  22222 344589999999998763

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.24  E-value=7.7e-05  Score=79.91  Aligned_cols=168  Identities=25%  Similarity=0.308  Sum_probs=95.9

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEecc-cc-C-C----CcccCCCCCCCEEEeccee-cChHHHHHHH
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGC-RL-D-E----PLIAINLNSLKNLSLQRVY-ANEQMVHNLI  169 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c-~l-~-~----p~~~~~l~sLk~L~L~~v~-~~~~~l~~Ll  169 (520)
                      .++++|.+...+.  ...-.+-.....++.|+.|++++| .. . .    ......+++|+.|+|..+. +++..+..+.
T Consensus       188 ~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  188 PLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             chhhHhhhccccc--CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            5677777765421  111113344556788999998873 21 1 1    1234566888899998887 5778888888


Q ss_pred             hcCCCcceeeeeccCCcceec----cccccccceEEEecccCCCC----ceeeeCCceeEEEeccccccCCCCCcceEEe
Q 039643          170 AECCSLEDLSLRYTLGLKFFS----VSKAHKLKNMVIVDYSRSSE----LESIVAPSLQQLTLVRVIVVATCPNLKKLHL  241 (520)
Q Consensus       170 s~CP~LE~L~L~~c~~l~~l~----I~~~~~Lk~L~I~~~~~~~~----~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L  241 (520)
                      ..||.||.|.+.+|..+....    ..++++|+.|++.+|....+    .....+|+|+.|.+..   ...++.++.+.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~---~~~c~~l~~~~l  342 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS---LNGCPSLTDLSL  342 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh---cCCCccHHHHHH
Confidence            889999999888887533211    12378899999988875321    1223466666655421   111444444444


Q ss_pred             cccc-cc-hhHHHHHHhCCcccceeeccccc
Q 039643          242 SEIV-LE-DQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       242 ~~~~-~~-~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      .... .. +........++++++.+.+..+.
T Consensus       343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            3211 11 12233344555555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.07  E-value=0.00021  Score=77.82  Aligned_cols=166  Identities=22%  Similarity=0.175  Sum_probs=101.2

Q ss_pred             CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccC---------------------------------
Q 039643           99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAI---------------------------------  145 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~---------------------------------  145 (520)
                      ..+.|.+...  +...+.. |-.||..++|++|.|.+|.+....+..                                 
T Consensus        85 kt~~lkl~~~--pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~  161 (1096)
T KOG1859|consen   85 KTKVLKLLPS--PARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP  161 (1096)
T ss_pred             hheeeeeccc--CCCCCCC-CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence            3455555443  2223333 889999999999999998663211110                                 


Q ss_pred             CCCCCCEEEecceec--ChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCC-CCceeeeCCceeEE
Q 039643          146 NLNSLKNLSLQRVYA--NEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQL  222 (520)
Q Consensus       146 ~l~sLk~L~L~~v~~--~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L  222 (520)
                      .+..|.+-+...+.+  .|.+++-    .|.||.|+|+++...+.-.+..++.||.|+|+++... .+.+.-.+-.|..|
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~SLql----l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L  237 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDESLQL----LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL  237 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHHHHHH----HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheee
Confidence            111222223333322  2223322    3888999998886433334445899999999988632 12222222347777


Q ss_pred             Eecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643          223 TLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       223 ~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      .+.+     .-+++++.+|..|++++|-+.+..-...+..+..|+.|.|.+++.
T Consensus       238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7763     236788999999999987765543345677788888998888764

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.98  E-value=0.00065  Score=42.25  Aligned_cols=25  Identities=36%  Similarity=0.557  Sum_probs=23.1

Q ss_pred             CCCEEEecceec-ChHHHHHHHhcCC
Q 039643          149 SLKNLSLQRVYA-NEQMVHNLIAECC  173 (520)
Q Consensus       149 sLk~L~L~~v~~-~~~~l~~Lls~CP  173 (520)
                      +||+|+|..|.+ ++..+++++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            699999999999 6778999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.66  E-value=3e-05  Score=78.95  Aligned_cols=198  Identities=20%  Similarity=0.097  Sum_probs=118.9

Q ss_pred             CcccccCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eec
Q 039643          113 ESAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFS  190 (520)
Q Consensus       113 ~~~~~LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~  190 (520)
                      .....+|+.+.....++.|+.+.+.+ ..|+..+..++|+.|+.+++.+.+  +..-++.|..||+|+..++.-.. +-.
T Consensus        78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~  155 (565)
T KOG0472|consen   78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPED  155 (565)
T ss_pred             chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchH
Confidence            45667888888888888888888766 447788888899998888876621  11123455667777665553111 011


Q ss_pred             ccc-----------------------ccccceEEEecccCC-CCceeeeCCceeEEEec-----cccccCCCCCcceEEe
Q 039643          191 VSK-----------------------AHKLKNMVIVDYSRS-SELESIVAPSLQQLTLV-----RVIVVATCPNLKKLHL  241 (520)
Q Consensus       191 I~~-----------------------~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~-----~~~~~~~l~~L~~L~L  241 (520)
                      +..                       ..+|+.|+...+... .+.......+|+.|.+.     ....|++|..|+++++
T Consensus       156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~  235 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV  235 (565)
T ss_pred             HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence            111                       334444443333211 01001111223333222     2236778888888888


Q ss_pred             cccccchhHHHHHHhCCcccceeeccccccc-ccccc-ccccccEEEeecCCc--hhHHhcCCCCccEeEecccCCC
Q 039643          242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPL-ERVKF-SSNLLKRVAFLFCRS--LRAVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l-~~~~~-~f~~L~~L~L~~c~~--l~~lL~~~P~L~~L~l~~~~~~  314 (520)
                      +.+.+. ........+++++..|++..+..- .|.++ ...+|++|+++...-  +-.-+.+. .|++|.+.|+++.
T Consensus       236 g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  236 GENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            776653 234456778999999999887742 34444 356799999986332  22556666 7888888888665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.54  E-value=2.7e-05  Score=79.26  Aligned_cols=150  Identities=20%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             ccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceecccccc
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAH  195 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~  195 (520)
                      .+|..++.|.+|..|.+.++.+. .|+...++.+|+.|+..++-+  +.++.-+++...|+.|+|.++.-..--.+.++.
T Consensus       151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs  228 (565)
T KOG0472|consen  151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPGCS  228 (565)
T ss_pred             cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCccH
Confidence            44554455555555555554332 234444455555555544432  122222455566777777776532222566678


Q ss_pred             ccceEEEecccCCC-C-ceeeeCCceeEEEec------cccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecc
Q 039643          196 KLKNMVIVDYSRSS-E-LESIVAPSLQQLTLV------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVS  267 (520)
Q Consensus       196 ~Lk~L~I~~~~~~~-~-~~~i~aP~L~~L~l~------~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~  267 (520)
                      .|+.|.++.+.... + ...-+.+++..|++.      .+..+.-+.+|+.|+++++.++.  +..-++++ +|+.|.+.
T Consensus       229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~le  305 (565)
T KOG0472|consen  229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALE  305 (565)
T ss_pred             HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhhc
Confidence            88888887765321 1 112256677777764      24455567778888888777654  33345666 77777777


Q ss_pred             cccc
Q 039643          268 SSQP  271 (520)
Q Consensus       268 ~~~~  271 (520)
                      +++.
T Consensus       306 GNPl  309 (565)
T KOG0472|consen  306 GNPL  309 (565)
T ss_pred             CCch
Confidence            7663

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.41  E-value=0.00033  Score=63.87  Aligned_cols=137  Identities=20%  Similarity=0.200  Sum_probs=93.9

Q ss_pred             cccccCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-ee--
Q 039643          114 SAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FF--  189 (520)
Q Consensus       114 ~~~~LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l--  189 (520)
                      ....+|+.+..+.+|++|++.++.+ +.|.+...+|.||.|.+..+++.  .+++-+.++|.||.|+|.++.--+ .+  
T Consensus        44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpg  121 (264)
T KOG0617|consen   44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPG  121 (264)
T ss_pred             ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCc
Confidence            4556788888888999999988877 44778888888988888766541  222335667999999988875211 11  


Q ss_pred             ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccc
Q 039643          190 SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSS  269 (520)
Q Consensus       190 ~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~  269 (520)
                      ..-.+.+|+-|.++++.+.     +-           +.+++.+.+|+.|.+..+..-.  +.+-++.+..|+.|++.++
T Consensus       122 nff~m~tlralyl~dndfe-----~l-----------p~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  122 NFFYMTTLRALYLGDNDFE-----IL-----------PPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             chhHHHHHHHHHhcCCCcc-----cC-----------ChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc
Confidence            1112678888888887752     11           3356778888888887665522  3345667788888888776


Q ss_pred             c
Q 039643          270 Q  270 (520)
Q Consensus       270 ~  270 (520)
                      .
T Consensus       184 r  184 (264)
T KOG0617|consen  184 R  184 (264)
T ss_pred             e
Confidence            5

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.39  E-value=0.0024  Score=68.35  Aligned_cols=155  Identities=26%  Similarity=0.328  Sum_probs=85.5

Q ss_pred             CCCCCEEEeccee--cChHHHHHHHhcCCCcceeeeeccCCcceec----cccccccceEEEecccCCCCceeeeCCcee
Q 039643          147 LNSLKNLSLQRVY--ANEQMVHNLIAECCSLEDLSLRYTLGLKFFS----VSKAHKLKNMVIVDYSRSSELESIVAPSLQ  220 (520)
Q Consensus       147 l~sLk~L~L~~v~--~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~----I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~  220 (520)
                      ...++.+.+..+.  .+......+...||.|+.|.+.+|..+....    ...++.|+.|+++++......    .+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~  235 (482)
T KOG1947|consen  160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL----SPLLL  235 (482)
T ss_pred             HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc----chhHh
Confidence            3444555544432  2445566666667888888777776543211    123677777777764210000    00000


Q ss_pred             EEEeccccccCCCCCcceEEecccc-cchhHHHHHHhCCcccceeecccccccccc-----ccccccccEEEeecCCchh
Q 039643          221 QLTLVRVIVVATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSSQPLERV-----KFSSNLLKRVAFLFCRSLR  294 (520)
Q Consensus       221 ~L~l~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~-----~~~f~~L~~L~L~~c~~l~  294 (520)
                            ......+++|+.+++..+. +++..+..+...|++|+.|.+..|..+...     ....++|++|+++.|....
T Consensus       236 ------~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  236 ------LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             ------hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence                  0012345667777776544 555556666666777777776666643222     2234567777777765532


Q ss_pred             -----HHhcCCCCccEeEeccc
Q 039643          295 -----AVDLDTPNLLSFTFESV  311 (520)
Q Consensus       295 -----~lL~~~P~L~~L~l~~~  311 (520)
                           ....++|+|++|.+...
T Consensus       310 d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  310 DSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHHHHHHHhCcchhhhhhhhc
Confidence                 44667888888776544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.34  E-value=0.00055  Score=67.51  Aligned_cols=123  Identities=16%  Similarity=0.126  Sum_probs=72.6

Q ss_pred             CCCCCCCEEEecceecC--hHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCC-CCceeeeCCceeE
Q 039643          145 INLNSLKNLSLQRVYAN--EQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQ  221 (520)
Q Consensus       145 ~~l~sLk~L~L~~v~~~--~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~  221 (520)
                      ..+..|++|+|+++.+.  ++++    .-.|.++.|+++++.-...-++..+++|..|+++++... ........-|.++
T Consensus       281 dTWq~LtelDLS~N~I~~iDESv----KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESV----KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchhhhhhhh----hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            34567777777777652  2222    223777777777765333223444677777777776521 0111222345555


Q ss_pred             EEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643          222 LTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       222 L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      |.+.+     ..++..+-+|+.|++.+|++..-.-.+-++++|.|+.|.|.+++.
T Consensus       357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            55542     123455667788888877776544445678888888888887763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.25  E-value=0.0016  Score=49.17  Aligned_cols=34  Identities=32%  Similarity=0.322  Sum_probs=16.8

Q ss_pred             CccEEEEeccccCC-C-cccCCCCCCCEEEecceec
Q 039643          127 LLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYA  160 (520)
Q Consensus       127 sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~  160 (520)
                      +|++|.|++|.+.. | ..+.++++|++|+++++.+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l   37 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL   37 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence            45555555554422 2 2344555555555555443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.20  E-value=0.0033  Score=70.70  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=61.9

Q ss_pred             ccccceEEEecccCCCCc---eeeeCCceeEEEecc-----ccccCCCCCcceEEecccccch-hHHHHHHhCCccccee
Q 039643          194 AHKLKNMVIVDYSRSSEL---ESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLED-QEFHELISKFPLLEDL  264 (520)
Q Consensus       194 ~~~Lk~L~I~~~~~~~~~---~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~-~~~~~ll~~l~~L~~L  264 (520)
                      +|+|++|.|.+-.+..+.   ..-+-|||.+|++++     ..++++++||+.|.+.+-.+.. ..+..++ ++++|+.|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCee
Confidence            566666666654432111   122445555555542     1245677777777776544432 2233433 68888888


Q ss_pred             ecccccccc---------ccccccccccEEEeecCCc----hhHHhcCCCCccEeEec
Q 039643          265 SVSSSQPLE---------RVKFSSNLLKRVAFLFCRS----LRAVDLDTPNLLSFTFE  309 (520)
Q Consensus       265 ~L~~~~~l~---------~~~~~f~~L~~L~L~~c~~----l~~lL~~~P~L~~L~l~  309 (520)
                      +++......         ..+...++|+.|+.++-.-    +..++..-|+|+....-
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            887643210         1223356777776665111    22566677777766644

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.93  E-value=0.0065  Score=60.14  Aligned_cols=149  Identities=16%  Similarity=0.169  Sum_probs=78.4

Q ss_pred             HHHHHHhcCCCcceeeeeccCC------cc----eeccccccccceEEEecccCC-CCceeeeCCceeEEEecc------
Q 039643          164 MVHNLIAECCSLEDLSLRYTLG------LK----FFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQLTLVR------  226 (520)
Q Consensus       164 ~l~~Lls~CP~LE~L~L~~c~~------l~----~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~~------  226 (520)
                      ++.+++.-|..|..|.++...+      +.    ++.+....+|+.+.++.|.-. .-.++..-|.|+++....      
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~  252 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV  252 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc
Confidence            4556666667777776666532      11    122333567777777776521 112334456666665520      


Q ss_pred             ----------------------c--cccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccc-ccccc
Q 039643          227 ----------------------V--IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK-FSSNL  281 (520)
Q Consensus       227 ----------------------~--~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~-~~f~~  281 (520)
                                            +  ..+..-..|+++++++|.+++  +..-..-.|.++.|.++.+....-.. ....+
T Consensus       253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~  330 (490)
T KOG1259|consen  253 PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQ  330 (490)
T ss_pred             ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhccc
Confidence                                  0  011223357788888776654  22334456888888888766422111 12456


Q ss_pred             ccEEEeecCCchh--HHhcCCCCccEeEecccCCC
Q 039643          282 LKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       282 L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~  314 (520)
                      |.+|+|++..-..  .+-...-|.++|.+.++.+.
T Consensus       331 L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  331 LQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             ceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence            7777776522111  22233445667777666444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.90  E-value=0.0024  Score=65.31  Aligned_cols=46  Identities=22%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             ccccCcccc-cCCCccEEEEeccccCC--CcccCCCCCCCEEEecc-eec
Q 039643          115 AYTLPQAIY-SAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQR-VYA  160 (520)
Q Consensus       115 ~~~LP~~l~-~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~-v~~  160 (520)
                      .-.+|+..| ..++|+.|+|+.+.+..  |..+.++++|.+|.+-+ +++
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            445676555 46888888888876533  66677888888777765 444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.81  E-value=0.01  Score=44.70  Aligned_cols=56  Identities=23%  Similarity=0.242  Sum_probs=42.7

Q ss_pred             CceEEEEEecCCCCCcccccCccc-ccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee
Q 039643           99 GVKELHIVVESSPHESAYTLPQAI-YSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY  159 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l-~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~  159 (520)
                      ++++|++...     ....+|... ..+++|++|++++|.+..  +..+.++++|+.|+++++.
T Consensus         2 ~L~~L~l~~n-----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN-----KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS-----TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC-----CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            5677777653     345677644 458999999999987744  4567899999999998875

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.69  E-value=0.0049  Score=71.14  Aligned_cols=100  Identities=22%  Similarity=0.055  Sum_probs=51.0

Q ss_pred             CCCccEEEEeccc--c-CC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc-ceeccccccccce
Q 039643          125 AKLLTTLVLNGCR--L-DE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL-KFFSVSKAHKLKN  199 (520)
Q Consensus       125 ~~sL~~L~L~~c~--l-~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l-~~l~I~~~~~Lk~  199 (520)
                      |+.|++|-+.++.  + .. +..+..+|.|++|+|+++. ....++.-|+..=+|++|+++++.-- -+..+..+.+|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            4456666666652  2 22 2235667777777777643 22344555666666777777665411 0223334556666


Q ss_pred             EEEecccCC--CCceeeeCCceeEEEec
Q 039643          200 MVIVDYSRS--SELESIVAPSLQQLTLV  225 (520)
Q Consensus       200 L~I~~~~~~--~~~~~i~aP~L~~L~l~  225 (520)
                      |++......  .+.+.-..++|++|.+.
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             eccccccccccccchhhhcccccEEEee
Confidence            666554421  11111124566666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.32  E-value=0.0052  Score=70.94  Aligned_cols=196  Identities=21%  Similarity=0.189  Sum_probs=110.0

Q ss_pred             cccCccccc-CCCccEEEEecc-cc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee-cc
Q 039643          116 YTLPQAIYS-AKLLTTLVLNGC-RL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF-SV  191 (520)
Q Consensus       116 ~~LP~~l~~-~~sL~~L~L~~c-~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l-~I  191 (520)
                      ..++..+|. ++.|++|+|++| .+ ..|...+.+-+||.|+|.+..+.  .++.-+.....|.+|++..+..+... .+
T Consensus       560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence            345555454 799999999987 44 44778888999999999887763  23333444578889998887654332 22


Q ss_pred             c-cccccceEEEecccCCCCc-ee---eeCCceeEEEecc--c---cccCCCCCcceEEeccc--ccchhHHHHHHhCCc
Q 039643          192 S-KAHKLKNMVIVDYSRSSEL-ES---IVAPSLQQLTLVR--V---IVVATCPNLKKLHLSEI--VLEDQEFHELISKFP  259 (520)
Q Consensus       192 ~-~~~~Lk~L~I~~~~~~~~~-~~---i~aP~L~~L~l~~--~---~~~~~l~~L~~L~L~~~--~~~~~~~~~ll~~l~  259 (520)
                      . .+++||+|.+......... ..   ....+|+.|+...  .   ..+..+..|..+...-.  ..........+..+.
T Consensus       638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~  717 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG  717 (889)
T ss_pred             hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence            2 2788999988776521111 11   1223333333321  1   11222333332221110  000011223456788


Q ss_pred             ccceeecccccccccc--------ccc-cccccEEEeecCCchh--HHhcCCCCccEeEecccCC
Q 039643          260 LLEDLSVSSSQPLERV--------KFS-SNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       260 ~L~~L~L~~~~~l~~~--------~~~-f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~  313 (520)
                      +|+.|++..|...+..        ... |++|..+.+..|....  ....-.|+|++|.+..++.
T Consensus       718 ~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~  782 (889)
T KOG4658|consen  718 NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL  782 (889)
T ss_pred             CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence            8888888887753211        111 5566666665665443  3335678899998887754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.03  E-value=0.015  Score=60.99  Aligned_cols=85  Identities=19%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             ccccCCCccEEEEecccc-CCCcccCCCC-CCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccc-ccccc
Q 039643          121 AIYSAKLLTTLVLNGCRL-DEPLIAINLN-SLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVS-KAHKL  197 (520)
Q Consensus       121 ~l~~~~sL~~L~L~~c~l-~~p~~~~~l~-sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~-~~~~L  197 (520)
                      .+...+.++.|.+.++.+ +.++....+. +|+.|++.++.+..  +..-+..+|.|+.|++.++......... ..++|
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L  188 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence            333446678888887655 3444444453 78888888776522  2133567788888888887632211111 36788


Q ss_pred             ceEEEecccC
Q 039643          198 KNMVIVDYSR  207 (520)
Q Consensus       198 k~L~I~~~~~  207 (520)
                      +.|+++++..
T Consensus       189 ~~L~ls~N~i  198 (394)
T COG4886         189 NNLDLSGNKI  198 (394)
T ss_pred             hheeccCCcc
Confidence            8888887763

>PLN03150 hypothetical protein; Provisional

Probab=94.59  E-value=0.035  Score=62.21  Aligned_cols=80  Identities=20%  Similarity=0.131  Sum_probs=61.3

Q ss_pred             CccEEEEeccccC--CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEE
Q 039643          127 LLTTLVLNGCRLD--EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVI  202 (520)
Q Consensus       127 sL~~L~L~~c~l~--~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I  202 (520)
                      .++.|+|+++.+.  .|..+..+++|+.|+|+++.+.+ .++..+..++.|+.|+|+++..  ...-.+.++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3788899988663  36778899999999999988743 3444578899999999999853  22334556899999999


Q ss_pred             ecccC
Q 039643          203 VDYSR  207 (520)
Q Consensus       203 ~~~~~  207 (520)
                      +++..
T Consensus       498 s~N~l  502 (623)
T PLN03150        498 NGNSL  502 (623)
T ss_pred             cCCcc
Confidence            98864

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.022  Score=56.50  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=107.3

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCc--ccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPL--IAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~--~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      ..|++++|.-...  ...-.+-..+-.++.|++|+|+.+.+..+-  -.....+|++|.|.+..++-......+...|.+
T Consensus        71 ~~v~elDL~~N~i--SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLI--SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchh--ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            5799999976421  111222233345678999999998774311  124667999999998887666777788889999


Q ss_pred             ceeeeeccCC----cceecccc-ccccceEEEecccCC----CCceeeeCCceeEEEec-c-------ccccCCCCCcce
Q 039643          176 EDLSLRYTLG----LKFFSVSK-AHKLKNMVIVDYSRS----SELESIVAPSLQQLTLV-R-------VIVVATCPNLKK  238 (520)
Q Consensus       176 E~L~L~~c~~----l~~l~I~~-~~~Lk~L~I~~~~~~----~~~~~i~aP~L~~L~l~-~-------~~~~~~l~~L~~  238 (520)
                      ++|.++.++.    ...-++.. ++.+++|....|...    .....---||+..+.+. +       ..+.+.+|.+.-
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9998887731    11111111 467777777777531    00111224666665542 1       223456677777


Q ss_pred             EEecccccchhHHHHHHhCCcccceeeccccccc
Q 039643          239 LHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPL  272 (520)
Q Consensus       239 L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l  272 (520)
                      |+|..+.++.=.-..-+.+++.|..|.+...+..
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            7776666643223355778888888888887753

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=94.32  E-value=0.025  Score=44.32  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             HHHHHHHHhccccccceEEEecccc---ccccccccccccccCCC
Q 039643          343 YLKLKEFLGASNQIENLLINLRSVN---IRQMPFDLEEFKNRSPS  384 (520)
Q Consensus       343 ~~~~~~~l~n~~~Le~L~i~~~~~~---~~~i~~~L~~~p~asp~  384 (520)
                      .++++||++|++.||.|+|......   ...+..+|..+|++|+.
T Consensus        22 ~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~   66 (72)
T smart00579       22 KELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSS   66 (72)
T ss_pred             HHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCc
Confidence            7999999999999999999985322   13456678888888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.31  E-value=0.021  Score=55.93  Aligned_cols=219  Identities=15%  Similarity=0.071  Sum_probs=109.1

Q ss_pred             cHHHHHH-HHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-----C-------CcccCCCCCCCEE
Q 039643           87 LVDKWIG-LAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-----E-------PLIAINLNSLKNL  153 (520)
Q Consensus        87 ~v~~Wl~-~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-----~-------p~~~~~l~sLk~L  153 (520)
                      ++...+. .++...+.+++|+....+....-.+...+..-++|+..+++.....     .       .+....+|.|++.
T Consensus        18 Dvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v   97 (388)
T COG5238          18 DVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV   97 (388)
T ss_pred             hhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence            3444443 2334667777776542111111233344444566666666652110     0       1234567777777


Q ss_pred             Eecceec---ChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEec---
Q 039643          154 SLQRVYA---NEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLV---  225 (520)
Q Consensus       154 ~L~~v~~---~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~---  225 (520)
                      +|+++.|   ....+..+|+.-..|++|.+++|...  ..-+|.  ..|..|.  .     ..-.-+.|.|+++...   
T Consensus        98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la--~-----nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA--Y-----NKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH--H-----HhhhccCCCceEEEeccch
Confidence            7777766   23456667777777888877777410  001111  0000000  0     0012234555554442   


Q ss_pred             ---cc-----cccCCCCCcceEEecccccchhHHH----HHHhCCcccceeeccccccc-c------ccccccccccEEE
Q 039643          226 ---RV-----IVVATCPNLKKLHLSEIVLEDQEFH----ELISKFPLLEDLSVSSSQPL-E------RVKFSSNLLKRVA  286 (520)
Q Consensus       226 ---~~-----~~~~~l~~L~~L~L~~~~~~~~~~~----~ll~~l~~L~~L~L~~~~~l-~------~~~~~f~~L~~L~  286 (520)
                         ++     ..+.+-.+|+.+.+..|.+....+.    .-+..+.+|+.|+|..+..- .      ..-...+.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence               00     0122235777788877666544222    22456778888888776641 1      1112334578888


Q ss_pred             eecCCch----hHHh-----cCCCCccEeEecccCCC
Q 039643          287 FLFCRSL----RAVD-----LDTPNLLSFTFESVRIP  314 (520)
Q Consensus       287 L~~c~~l----~~lL-----~~~P~L~~L~l~~~~~~  314 (520)
                      +..|--.    ..++     .-.|+|..|....+.+.
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            8776321    1222     24678887777665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.03  E-value=0.057  Score=38.06  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=17.4

Q ss_pred             CccEEEEeccccCC-CcccCCCCCCCEEEecceec
Q 039643          127 LLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYA  160 (520)
Q Consensus       127 sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~  160 (520)
                      +|++|+|+++.+.. |+.+.++++|+.|+++++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            45666666655432 33355566666666655554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.03  E-value=0.14  Score=53.79  Aligned_cols=133  Identities=12%  Similarity=0.146  Sum_probs=70.2

Q ss_pred             CCCCCCCEEEecceecChHHHHHHHhcCC-CcceeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEE
Q 039643          145 INLNSLKNLSLQRVYANEQMVHNLIAECC-SLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLT  223 (520)
Q Consensus       145 ~~l~sLk~L~L~~v~~~~~~l~~Lls~CP-~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~  223 (520)
                      ..++.++.|++++|.+..  ++    ..| .|+.|.+.+|..+..+.-.-.++|++|.+.+|... .   .-.++|++|.
T Consensus        49 ~~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L-~---sLP~sLe~L~  118 (426)
T PRK15386         49 EEARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEI-S---GLPESVRSLE  118 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccc-c---ccccccceEE
Confidence            345778888888775421  11    233 48888888887654432111357888888877421 1   1124677776


Q ss_pred             ecc--ccccCCCC-CcceEEecccccchhHHHHHHhCC-cccceeeccccccccccccccccccEEEeec
Q 039643          224 LVR--VIVVATCP-NLKKLHLSEIVLEDQEFHELISKF-PLLEDLSVSSSQPLERVKFSSNLLKRVAFLF  289 (520)
Q Consensus       224 l~~--~~~~~~l~-~L~~L~L~~~~~~~~~~~~ll~~l-~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~  289 (520)
                      +..  ...+..+| +|++|.+..+....  ...+-..+ ++|+.|.+++|......+....+|++|.++.
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI  186 (426)
T ss_pred             eCCCCCcccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence            642  12344443 57777664321100  00000112 4688888877765321111224677777754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.02  E-value=0.036  Score=58.17  Aligned_cols=101  Identities=21%  Similarity=0.218  Sum_probs=71.8

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCC-CccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAK-LLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~-sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      ..++.|.+...     ....+|+.....+ +|+.|+++++.+.. |.....++.|+.|.+..+.+.  .+.......+.|
T Consensus       116 ~~l~~L~l~~n-----~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L  188 (394)
T COG4886         116 TNLTSLDLDNN-----NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNL  188 (394)
T ss_pred             cceeEEecCCc-----ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh--hhhhhhhhhhhh
Confidence            45666766553     3567788777774 99999999987754 456789999999999999873  233344467999


Q ss_pred             ceeeeeccCCcceec--cccccccceEEEeccc
Q 039643          176 EDLSLRYTLGLKFFS--VSKAHKLKNMVIVDYS  206 (520)
Q Consensus       176 E~L~L~~c~~l~~l~--I~~~~~Lk~L~I~~~~  206 (520)
                      +.|+++++.- ..+.  +.....|++|.+.++.
T Consensus       189 ~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         189 NNLDLSGNKI-SDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hheeccCCcc-ccCchhhhhhhhhhhhhhcCCc
Confidence            9999999862 2221  2224458888888874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.53  E-value=0.066  Score=53.25  Aligned_cols=195  Identities=15%  Similarity=0.133  Sum_probs=110.3

Q ss_pred             CcccccCCCccEEEEeccccCC----CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCC---cceec
Q 039643          119 PQAIYSAKLLTTLVLNGCRLDE----PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLG---LKFFS  190 (520)
Q Consensus       119 P~~l~~~~sL~~L~L~~c~l~~----p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~---l~~l~  190 (520)
                      |.++++.+-+..|.|.+|.++.    .........++.|+|.++.+ +-..+..++...|.|+.|+|+.+.-   +..+.
T Consensus        38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp  117 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP  117 (418)
T ss_pred             eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence            4455555666777788876643    12234567889999999988 5567888999999999999987642   22232


Q ss_pred             cccccccceEEEecccCCC---CceeeeCCceeEEEecc----ccc-----cCC-CCCcceEEecccccc-hhHHHHHHh
Q 039643          191 VSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR----VIV-----VAT-CPNLKKLHLSEIVLE-DQEFHELIS  256 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~----~~~-----~~~-l~~L~~L~L~~~~~~-~~~~~~ll~  256 (520)
                      .. ..+|+.|.+.+.+..-   ....-+.|.++.|.++.    ...     ++. -+.+.++....|... .....++..
T Consensus       118 ~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r  196 (418)
T KOG2982|consen  118 LP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR  196 (418)
T ss_pred             cc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence            22 5688888888776321   11122344444443320    000     000 012222222211110 012335666


Q ss_pred             CCcccceeeccccccc--c--ccccccccccEEEeecCCc-hh---HHhcCCCCccEeEecccCCC
Q 039643          257 KFPLLEDLSVSSSQPL--E--RVKFSSNLLKRVAFLFCRS-LR---AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       257 ~l~~L~~L~L~~~~~l--~--~~~~~f~~L~~L~L~~c~~-l~---~lL~~~P~L~~L~l~~~~~~  314 (520)
                      -+|++..+-++.|+.-  .  .....|+.+..|.|+.... .|   .-+...|.|..|.+..+++.
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            7888888888888641  1  1122344455555554211 22   56678899988888877554

>PLN03150 hypothetical protein; Provisional

Probab=93.23  E-value=0.077  Score=59.44  Aligned_cols=106  Identities=13%  Similarity=0.043  Sum_probs=71.7

Q ss_pred             CCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEecc
Q 039643          149 SLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR  226 (520)
Q Consensus       149 sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~  226 (520)
                      .++.|+|.++.+.+ .++.-+..++.|+.|+|+++...  .+-.+..+++|+.|+++++.....               .
T Consensus       419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~---------------i  482 (623)
T PLN03150        419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS---------------I  482 (623)
T ss_pred             EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC---------------C
Confidence            47889999887742 34445788999999999998632  222456689999999999874210               1


Q ss_pred             ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          227 VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       227 ~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +..+.++++|+.|+|++|.+++..+..+.....++..+.+.++.
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            23467889999999998888765444433333445555555543

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=93.16  E-value=0.089  Score=38.35  Aligned_cols=29  Identities=14%  Similarity=0.058  Sum_probs=22.6

Q ss_pred             cccccChhhHHHHHHHHHhccccccceEEE
Q 039643          333 EHDVGDIDNWYLKLKEFLGASNQIENLLIN  362 (520)
Q Consensus       333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~  362 (520)
                      .|+.|... ..++++|+++|+++||+|+|.
T Consensus        22 ~~f~g~~~-e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   22 KGFRGEEN-ELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             EeeeCcHH-HHHHHHHHHhhhhhhcEEEEE
Confidence            34444432 279999999999999999986

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.87  E-value=0.025  Score=53.13  Aligned_cols=92  Identities=18%  Similarity=0.143  Sum_probs=62.8

Q ss_pred             ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCccee--
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGLKFF--  189 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--  189 (520)
                      .+.+|-.-..--.++.++-+++.+.-  -..+.++++++.|.+.+|.. ++..+..+-...|+||.|+|++|..++.-  
T Consensus        90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen   90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence            34666554433456777777754321  23567888999999999875 88888888777899999999999765432  


Q ss_pred             -ccccccccceEEEeccc
Q 039643          190 -SVSKAHKLKNMVIVDYS  206 (520)
Q Consensus       190 -~I~~~~~Lk~L~I~~~~  206 (520)
                       .+..+++|++|.+.+-.
T Consensus       170 ~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  170 ACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHHHhhhhHHHHhcCch
Confidence             23346777777776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.82  E-value=0.05  Score=53.04  Aligned_cols=104  Identities=21%  Similarity=0.126  Sum_probs=61.1

Q ss_pred             ceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCccee
Q 039643          100 VKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDL  178 (520)
Q Consensus       100 VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L  178 (520)
                      |+++.++...   .....+....-....|+.|.+.++.+.....+..+|+||+|.++.+.+ ....+.-++..||+|.+|
T Consensus        20 v~~l~lD~~~---s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l   96 (260)
T KOG2739|consen   20 VDELFLDNAR---SGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL   96 (260)
T ss_pred             hhhhhcchhh---hcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence            4555555421   112233333334556777777777665445667788999999988855 334566667778888888


Q ss_pred             eeeccCC--cceec-cccccccceEEEeccc
Q 039643          179 SLRYTLG--LKFFS-VSKAHKLKNMVIVDYS  206 (520)
Q Consensus       179 ~L~~c~~--l~~l~-I~~~~~Lk~L~I~~~~  206 (520)
                      +++++..  +..+. +..+++|+.|++..|.
T Consensus        97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             eecCCccccccccchhhhhcchhhhhcccCC
Confidence            8888752  11111 1124556666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.26  E-value=0.15  Score=50.17  Aligned_cols=187  Identities=13%  Similarity=0.172  Sum_probs=104.5

Q ss_pred             cCCCccEEEEeccccCC------CcccCCCCCCCEEEecceec---ChHH------HHHHHhcCCCcceeeeeccC-Ccc
Q 039643          124 SAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYA---NEQM------VHNLIAECCSLEDLSLRYTL-GLK  187 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~---~~~~------l~~Lls~CP~LE~L~L~~c~-~l~  187 (520)
                      ...+++.++|+|+.+..      .....+-.+|+...+++...   .+..      +-..+..||.|+..+|+++- +.+
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            36789999999987643      12344556777777765532   1111      22335689999999999884 322


Q ss_pred             e---e--ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch---hHHHHHHhCCc
Q 039643          188 F---F--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED---QEFHELISKFP  259 (520)
Q Consensus       188 ~---l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~---~~~~~ll~~l~  259 (520)
                      .   +  -|+....|+.|.+.+|..++..-.--+..|.+|.+.  ....+-|.|+......|.+..   ......++.-.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n--KKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN--KKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH--hhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            1   1  255578899999998874321100001123332221  123567888888776655432   22334555557


Q ss_pred             ccceeecccccccccccc---------ccccccEEEeecCCc-------hhHHhcCCCCccEeEecccCC
Q 039643          260 LLEDLSVSSSQPLERVKF---------SSNLLKRVAFLFCRS-------LRAVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       260 ~L~~L~L~~~~~l~~~~~---------~f~~L~~L~L~~c~~-------l~~lL~~~P~L~~L~l~~~~~  313 (520)
                      +|+.+.+..+.. .|.|+         ...+|+.|+|....-       +...+...|.|..|.+.+|-+
T Consensus       186 ~lk~vki~qNgI-rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         186 NLKEVKIQQNGI-RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             CceeEEeeecCc-CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            888888877652 22221         124566666654211       114445566666666655533

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.96  E-value=0.048  Score=53.16  Aligned_cols=13  Identities=31%  Similarity=0.335  Sum_probs=8.3

Q ss_pred             ccccceEEEeccc
Q 039643          194 AHKLKNMVIVDYS  206 (520)
Q Consensus       194 ~~~Lk~L~I~~~~  206 (520)
                      +|+||+|.++.++
T Consensus        64 Lp~LkkL~lsdn~   76 (260)
T KOG2739|consen   64 LPKLKKLELSDNY   76 (260)
T ss_pred             cchhhhhcccCCc
Confidence            5666666666663

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.72  E-value=0.023  Score=55.85  Aligned_cols=79  Identities=24%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             CCceeEEEec-----cccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccccccccccEEEeecC
Q 039643          216 APSLQQLTLV-----RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFC  290 (520)
Q Consensus       216 aP~L~~L~l~-----~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c  290 (520)
                      .|.|+.|.++     ....+..|.+|++|+|.-|.+.+-.-...+.++|+|+.|-|..++-....|              
T Consensus        40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag--------------  105 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG--------------  105 (388)
T ss_pred             cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc--------------
Confidence            4555555543     122457788999999987766553344567889999999887755111100              


Q ss_pred             Cchh-HHhcCCCCccEeEe
Q 039643          291 RSLR-AVDLDTPNLLSFTF  308 (520)
Q Consensus       291 ~~l~-~lL~~~P~L~~L~l  308 (520)
                      .+.. ..++.+|||++|+=
T Consensus       106 ~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen  106 QNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhHHHHHHHHcccchhccC
Confidence            1222 56777888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=91.18  E-value=0.18  Score=35.44  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=24.6

Q ss_pred             CCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC
Q 039643          148 NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL  184 (520)
Q Consensus       148 ~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~  184 (520)
                      ++|++|+|.++.+.+  ++..++.||.|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578888888888742  44446788888888888874

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.02  E-value=0.27  Score=46.40  Aligned_cols=78  Identities=15%  Similarity=0.099  Sum_probs=45.3

Q ss_pred             CCccEEEEeccccCCCcccCCCCCCCEEEecceecC--hHHHHHHHhcCCCcceeeeeccCC--ccee-ccccccccceE
Q 039643          126 KLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYAN--EQMVHNLIAECCSLEDLSLRYTLG--LKFF-SVSKAHKLKNM  200 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~--~~~l~~Lls~CP~LE~L~L~~c~~--l~~l-~I~~~~~Lk~L  200 (520)
                      .....++|+.+.+..-..+..++.|.+|.|..++++  +..+..   -.|+|..|.|.+++-  +..+ ....+|+|++|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCcccee
Confidence            345666777665433345667777777777777662  223332   247777777777642  1111 12237788888


Q ss_pred             EEeccc
Q 039643          201 VIVDYS  206 (520)
Q Consensus       201 ~I~~~~  206 (520)
                      .+.++.
T Consensus       119 tll~Np  124 (233)
T KOG1644|consen  119 TLLGNP  124 (233)
T ss_pred             eecCCc
Confidence            777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.84  E-value=0.44  Score=50.21  Aligned_cols=128  Identities=16%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCCccEEEEeccccCCCcccCCCC-CCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEe
Q 039643          125 AKLLTTLVLNGCRLDEPLIAINLN-SLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIV  203 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~~p~~~~~l~-sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~  203 (520)
                      |..+..|++++|.+..-+   .+| +|++|.+.+|.-- ..++..+  .+.|+.|.+.+|..+..+    .++|+.|.+.
T Consensus        51 ~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL----P~sLe~L~L~  120 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL----PESVRSLEIK  120 (426)
T ss_pred             hcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc----ccccceEEeC
Confidence            455566666665443211   222 4666666554320 0111111  246777777766544322    2466666665


Q ss_pred             cccCCCCceeeeCCceeEEEecc--c---cccC-CC-CCcceEEecccccchhHHHHHHhCC-cccceeecccc
Q 039643          204 DYSRSSELESIVAPSLQQLTLVR--V---IVVA-TC-PNLKKLHLSEIVLEDQEFHELISKF-PLLEDLSVSSS  269 (520)
Q Consensus       204 ~~~~~~~~~~i~aP~L~~L~l~~--~---~~~~-~l-~~L~~L~L~~~~~~~~~~~~ll~~l-~~L~~L~L~~~  269 (520)
                      ....  ..+..--++|+.|.+..  +   ..+. .+ ++|++|.+.++....     +...+ .+|+.|+++.+
T Consensus       121 ~n~~--~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        121 GSAT--DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCC--cccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-----CcccccccCcEEEeccc
Confidence            4321  11111224566666531  0   0111 12 468888887654321     11122 47888888664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.08  E-value=0.16  Score=47.92  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             HhCCcccceeeccccccc-----cccccccccccEEEeecCCchh----HHhcCCCCccEeEecc
Q 039643          255 ISKFPLLEDLSVSSSQPL-----ERVKFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFES  310 (520)
Q Consensus       255 l~~l~~L~~L~L~~~~~l-----~~~~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~  310 (520)
                      +.+++.++.|.+.+|..+     +.++..+++|+.|+|++|...+    ..|..++||+.|.+.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            445666666666665543     2233345566666666665543    4445566666666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.20  E-value=1.2  Score=42.18  Aligned_cols=60  Identities=30%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             cCCCccEEEEecccc-CC-CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccC
Q 039643          124 SAKLLTTLVLNGCRL-DE-PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTL  184 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l-~~-p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~  184 (520)
                      ..+.|..|.|.++.+ .+ |.-..-+|+|++|.|.++.+ .-+++.. +.+||.|++|++.++.
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            357888999998765 33 33445678899999998876 3344444 4679999999998875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.44  E-value=0.23  Score=49.15  Aligned_cols=58  Identities=21%  Similarity=0.158  Sum_probs=28.2

Q ss_pred             CCCccEEEEeccccCCCcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeecc
Q 039643          125 AKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYT  183 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c  183 (520)
                      ++.|++|.|+-+.+..-..+..+.+||.|+|..+.+ +-+.+. -+-+.|+|..|-|..+
T Consensus        40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWLDEN   98 (388)
T ss_pred             cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhhccC
Confidence            345555555555443323445556666666655554 212221 1345566665555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 79/563 (14%), Positives = 157/563 (27%), Gaps = 206/563 (36%)

Query: 3   MITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWILLVRLK 62
           +++ ++   R   + T  +   E+  + +++ ++     V  R +  L +++   L+ L+
Sbjct: 94  LMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKLRQA--LLELR 148

Query: 63  DVEGSSYLV-------NKWTALVVDVEGSSSLVDK------WIGLAVGNGVKELHIVVES 109
               +  ++        K   + +DV  S  +  K      W+   + N          +
Sbjct: 149 P---AKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLN--LKN---------CN 193

Query: 110 SPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAI--NLNSLKNLSLQRVYANEQMVHN 167
           SP      L       KLL  +  N     +    I   ++S++   L+R+  ++   + 
Sbjct: 194 SPETVLEML------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENC 246

Query: 168 LIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV 227
           L+     L ++          F++      K ++    +R  +    V   L   T   +
Sbjct: 247 LLV----LLNVQNAKAW--NAFNL----SCKILLT---TRFKQ----VTDFLSAATTTHI 289

Query: 228 IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ-PLERVKFSSNLLKRVA 286
            +          H S   L   E   L+ K+     L       P E +  +        
Sbjct: 290 SLD---------HHSM-TLTPDEVKSLLLKY-----LDCRPQDLPREVLTTN-------- 326

Query: 287 FLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWNVFFVHEHDVGDIDNW-YLK 345
                         P  LS   ES+R             W             DNW ++ 
Sbjct: 327 --------------PRRLSIIAESIR--------DGLATW-------------DNWKHVN 351

Query: 346 LKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIVGMEVPIQEY 405
             +    +  IE+ L  L     R+M                                 +
Sbjct: 352 CDKL---TTIIESSLNVLEPAEYRKM---------------------------------F 375

Query: 406 KNLMDGIFWICYPKNLYLPKQFNASSQFIEWLLELLWNRNE---------KCCKSCPIKC 456
             L   +F    P + ++P            LL L+W             K  K   ++ 
Sbjct: 376 DRL--SVF----PPSAHIPTI----------LLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 457 WR-------H--YLKNTKTASFLPNGDARPINIDN------WRDRLPMLPDGY------- 494
                       YL+               ++  N        D +P   D Y       
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 495 -LRERLPTLPDGNFK---LNLEW 513
            L+          F+   L+  +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 72/438 (16%), Positives = 129/438 (29%), Gaps = 109/438 (24%)

Query: 1   MNMITELQIMDRISELPTFWKEKDEELQKEFDELKLIDNNLVQFRNELKLGIQKWI---- 56
           +N+         +  L     + D       D    I   +   + EL+  ++       
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 57  LLVRLKDVE----------GSSYLVNKWTALVVDVEGSS-----SLVDKWIGLAVGNGV- 100
           LLV L +V+              L+      V D   ++     SL    + L       
Sbjct: 247 LLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 101 ---KELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG-CRLD-------EPLIAINLNS 149
              K L    +  P E   T P+ +    ++   + +G    D       + L  I  +S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 150 LKNLS---LQRVYANEQMVHNLIAECCSL--ED-------LSLRYTLGLKFFSVSKAHKL 197
           L  L     ++++           +  S+           LSL +   +K   +   +KL
Sbjct: 363 LNVLEPAEYRKMF-----------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 198 KNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK 257
               +V+        SI  PS+               N   LH   IV    + + +   
Sbjct: 412 HKYSLVEKQPKESTISI--PSIYLELK------VKLENEYALH-RSIV----DHYNIPKT 458

Query: 258 FPLLEDLSVSSSQPLERVKFSSNL---LKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIP 314
           F   +DL      P     F S++   LK            + L     L F F   +I 
Sbjct: 459 FD-SDDLIP----PYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 315 TISISASHQCPWNVFFVHEHDVGDIDNWYLK---------------LKEFLGASNQIENL 359
             S        WN      + +  +   Y                 + +FL    +IE  
Sbjct: 509 HDST------AWNASGSILNTLQQLKF-YKPYICDNDPKYERLVNAILDFL---PKIEEN 558

Query: 360 LINLRSVNIRQMPFDLEE 377
           LI  +  ++ ++    E+
Sbjct: 559 LICSKYTDLLRIALMAED 576

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 41/238 (17%), Positives = 85/238 (35%), Gaps = 26/238 (10%)

Query: 70  LVNK-WTALVVD--VEGSSSLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAK 126
            V K W  L  D  +  +  L  K +   V   +    ++    P           +S  
Sbjct: 34  GVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF 93

Query: 127 LLTTLVLNGCRLDEP---LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYT 183
            +  + L+   ++      I    + L+NLSL+ +  ++ +V+  +A+  +L  L+L   
Sbjct: 94  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGC 152

Query: 184 LGLKFFSVSK-AHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLS 242
            G   F++         +  ++ S   +              V+V V      + +L+LS
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH---------VQVAVAHVSETITQLNLS 203

Query: 243 EIV--LEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDL 298
                L+  +   L+ + P L  L +S S  L      ++  +         L+ + L
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-----KNDCFQEFF--QLNYLQHLSL 254

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 23/157 (14%)

Query: 128 LTTLVLNGCRL--DEPLIAI--NLNSLKNLSLQRVYA-NEQMVHNLIAECC-SLEDLSL- 180
           L  L L+GC    +  L  +  + + L  L+L   +   E+ V   +A    ++  L+L 
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 181 RYTLGLKFFSVSK-AHKLKNMVIVDYSRSSEL--ESIVA----PSLQQLTLVR------- 226
            Y   L+   +S    +  N+V +D S S  L  +          LQ L+L R       
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263

Query: 227 -VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE 262
            ++ +   P LK L +  IV  D     L    P L+
Sbjct: 264 TLLELGEIPTLKTLQVFGIVP-DGTLQLLKEALPHLQ 299

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 31/223 (13%)

Query: 126 KLLTTLVLNGCRL----DEPLIAI--NLNSLKNLSLQRVYANE---QMVHNLIAECCSLE 176
           + + TL++          + L  +  +  SL+ L+       +   + +  +   C SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 177 DLSLRYTLGLKFFSV-SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV-------- 227
            + +     L+       A  L+       +    +       +    L R+        
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 228 ---IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKR 284
              I+      ++KL L   +LE ++   LI K P LE L   +             L+ 
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-------IGDRGLEV 336

Query: 285 VAFLFCRSLRAVDLD-TPNLLSFTFESVRIPTISISA-SHQCP 325
           +A  +C+ L+ + ++   +      E   +    + A +  C 
Sbjct: 337 LA-QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 23/205 (11%)

Query: 101 KELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRL---DEPLIAI--NLNSLKNLSL 155
           KEL +        S + L     +   L +L ++          L  +     +LK+L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 156 QRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIV 215
            R    E++   L+     LE+L          ++      + + + V  S   EL  + 
Sbjct: 219 NRAVPLEKLAT-LLQRAPQLEELGTGG------YTAEVRPDVYSGLSVALSGCKELRCL- 270

Query: 216 APSLQQLTLVRVIVVAT-CPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLER 274
                      +  V + C  L  L+LS   ++  +  +L+ + P L+ L V        
Sbjct: 271 -SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD------ 323

Query: 275 VKFSSNLLKRVAFLFCRSLRAVDLD 299
                  L+ +A   C+ LR + + 
Sbjct: 324 -YIEDAGLEVLA-STCKDLRELRVF 346

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 30/164 (18%)

Query: 149 SLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRS 208
             + + +   YA       +I     +  + L+       F++                 
Sbjct: 44  CRRKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLV---------------P 86

Query: 209 SELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSS 268
                 V P ++ +        ++   L+++ L  +V+ D     +   F   + L +SS
Sbjct: 87  DGWGGYVYPWIEAM-------SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139

Query: 269 SQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVR 312
            +      FS++ L  +A   CR+L+ +DL   ++   +   + 
Sbjct: 140 CE-----GFSTDGLAAIA-ATCRNLKELDLRESDVDDVSGHWLS 177

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 25/173 (14%)

Query: 143 IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRY-----TLGLKFFSVSKAHKL 197
           ++ +   L+ + L+R+   +  +  +     + + L L       T GL   + +    L
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA-ATCRNL 158

Query: 198 KNMVIVD-YSRSSELESIVA-----PSLQQLTLVRV----------IVVATCPNLKKLHL 241
           K + + +          +        SL  L +  +           +V  CPNLK L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLR 294
           +  V   ++   L+ + P LE+L         R    S L    A   C+ LR
Sbjct: 219 NRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV--ALSGCKELR 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.3
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.2
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.2
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.1
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.03
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.03
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.03
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.03
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.02
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.0
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.0
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.99
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.95
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.9
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.35
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.34
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.29
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.02
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.01
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.95
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.79
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.71
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.65
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	93.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	87.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.76

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.59  E-value=4.5e-15  Score=161.69  Aligned_cols=368  Identities=17%  Similarity=0.113  Sum_probs=197.1

Q ss_pred             cccccceeeecccCchhHHHhHHhhcccc----hhhhHHHHHHhhhhcccCCccEEEEEeecCccccccccccceeeeee
Q 039643            4 ITELQIMDRISELPTFWKEKDEELQKEFD----ELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVV   79 (520)
Q Consensus         4 ~~~~~~AvrTsvLSkRWr~lW~~~p~~f~----~~~~vd~~L~~~~~~~~~~I~~F~L~~~~~~~~~~~~~~~~~~~~~f   79 (520)
                      +...+++++|+++||||++++........    +..+++..+.++.     .++++.+..... ....+...        
T Consensus        28 L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~L~~L~L~~~~~-~~~~~~~~--------   93 (592)
T 3ogk_B           28 ITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFP-----NLRSLKLKGKPR-AAMFNLIP--------   93 (592)
T ss_dssp             CCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCT-----TCSEEEEECSCG-GGGGTCSC--------
T ss_pred             cCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCC-----CCeEEEecCCcc-hhhccccc--------
Confidence            34568999999999999999765543211    2234455555433     588888865321 00000000        


Q ss_pred             cccCCCccHHHHHHHHHh--CCceEEEEEecCC------------------------CCCcccccCcccccCCCccEEEE
Q 039643           80 DVEGSSSLVDKWIGLAVG--NGVKELHIVVESS------------------------PHESAYTLPQAIYSAKLLTTLVL  133 (520)
Q Consensus        80 ~l~~~~~~v~~Wl~~a~~--~~VkeL~L~~~~~------------------------~~~~~~~LP~~l~~~~sL~~L~L  133 (520)
                        .........|+.....  +++++|++....-                        .......++..+..|++|++|+|
T Consensus        94 --~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L  171 (592)
T 3ogk_B           94 --ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM  171 (592)
T ss_dssp             --TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEEC
T ss_pred             --ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEEC
Confidence              0011223344443321  3455555543200                        00001112222234556666666


Q ss_pred             eccccCC------CcccCCCCCCCEEEecceecC---hHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEEe
Q 039643          134 NGCRLDE------PLIAINLNSLKNLSLQRVYAN---EQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVIV  203 (520)
Q Consensus       134 ~~c~l~~------p~~~~~l~sLk~L~L~~v~~~---~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I~  203 (520)
                      ++|.+..      +....++++|++|+|.++.+.   ...+..++.+||+|+.|++.+|.... .-.+.++++|+.|.++
T Consensus       172 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred             ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence            6654321      112234566666666655542   45566666666777777766654211 0112335677777776


Q ss_pred             cccCCCC-----ceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc-
Q 039643          204 DYSRSSE-----LESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP-  271 (520)
Q Consensus       204 ~~~~~~~-----~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~-  271 (520)
                      .......     ......++|+.+.+..      +..+..+++|++|+++++.+++..+..+++++++|+.|.+..+.. 
T Consensus       252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~  331 (592)
T 3ogk_B          252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD  331 (592)
T ss_dssp             BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred             ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH
Confidence            4321100     1123456788887742      223467889999999988887777777889999999999984322 


Q ss_pred             --ccccccccccccEEEeec----------CCchh-----HHhcCCCCccEeEecccCCCCcccccc-c-CCCcE-EEEe
Q 039643          272 --LERVKFSSNLLKRVAFLF----------CRSLR-----AVDLDTPNLLSFTFESVRIPTISISAS-H-QCPWN-VFFV  331 (520)
Q Consensus       272 --l~~~~~~f~~L~~L~L~~----------c~~l~-----~lL~~~P~L~~L~l~~~~~~~~~~~~l-~-~~~L~-v~~~  331 (520)
                        +......+++|++|++..          |....     .+...+|+|+.|++..+.+.......+ . ...++ +.+.
T Consensus       332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence              111222457899999994          65543     445679999999997666553101111 1 11233 3332


Q ss_pred             ----ccccccChhhHHHHHHHHHhccccccceEEEeccc-cccccccccccccccCCCCcccccceEEEE
Q 039643          332 ----HEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSV-NIRQMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       332 ----~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~-~~~~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                          .+.+.+.+  +..-+..++.+++.|+.|.++..++ ........+.      ..+| +|++|.+..
T Consensus       412 ~~~~~n~l~~~p--~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~------~~~~-~L~~L~L~~  472 (592)
T 3ogk_B          412 LLDREERITDLP--LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG------QYSP-NVRWMLLGY  472 (592)
T ss_dssp             ECSCCSCCSSCC--CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH------HSCT-TCCEEEECS
T ss_pred             ecCCCccccCch--HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH------HhCc-cceEeeccC
Confidence                23333321  0122467788899999999974111 1222222221      1236 888998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=1e-14  Score=158.83  Aligned_cols=284  Identities=18%  Similarity=0.249  Sum_probs=152.9

Q ss_pred             cccceeeecccCchhHHHhHHhhcccc--hh--hhHHHHHHhhhhcccCCccEEEEEeecCccccccccccceeeeeecc
Q 039643            6 ELQIMDRISELPTFWKEKDEELQKEFD--EL--KLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDV   81 (520)
Q Consensus         6 ~~~~AvrTsvLSkRWr~lW~~~p~~f~--~~--~~vd~~L~~~~~~~~~~I~~F~L~~~~~~~~~~~~~~~~~~~~~f~l   81 (520)
                      ..++++|++.+||||+++.......++  ..  ......+.++     +.++++.+...... ..            +.+
T Consensus        23 ~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~-~~------------~~l   84 (594)
T 2p1m_B           23 LDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF-----PKVRSVELKGKPHF-AD------------FNL   84 (594)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHC-----TTCCEEEEECSCGG-GG------------GTC
T ss_pred             CchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhC-----CCceEEeccCCCch-hh------------ccc
Confidence            467899999999999998332211111  10  0112233332     36888888653210 00            000


Q ss_pred             c--CCCccHHHHHHHHHh--CCceEEEEEecCCCC-----------------------CcccccCcccccCCCccEEEEe
Q 039643           82 E--GSSSLVDKWIGLAVG--NGVKELHIVVESSPH-----------------------ESAYTLPQAIYSAKLLTTLVLN  134 (520)
Q Consensus        82 ~--~~~~~v~~Wl~~a~~--~~VkeL~L~~~~~~~-----------------------~~~~~LP~~l~~~~sL~~L~L~  134 (520)
                      .  .-...++.|+.....  .++++|++....-..                       .....++..+..|++|++|+|+
T Consensus        85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~  164 (594)
T 2p1m_B           85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR  164 (594)
T ss_dssp             SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT
T ss_pred             ccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc
Confidence            0  012345566665432  467777775421000                       0000122222345666666666


Q ss_pred             ccccCC------CcccCCCCCCCEEEeccee--cChHHHHHHHhcCCCcceeeeeccCCccee--ccccccccceEEEec
Q 039643          135 GCRLDE------PLIAINLNSLKNLSLQRVY--ANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SVSKAHKLKNMVIVD  204 (520)
Q Consensus       135 ~c~l~~------p~~~~~l~sLk~L~L~~v~--~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I~~~~~Lk~L~I~~  204 (520)
                      +|.+..      +.....+++|++|+|.++.  +++..+..++.+||+|+.|++.+|.....+  .+..+++|+.|.+..
T Consensus       165 ~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             TCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             CCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence            654321      1122356677777777765  466677777777888888888877432211  112245666665443


Q ss_pred             ccC----------------------------CC----CceeeeCCceeEEEecccc--------ccCCCCCcceEEeccc
Q 039643          205 YSR----------------------------SS----ELESIVAPSLQQLTLVRVI--------VVATCPNLKKLHLSEI  244 (520)
Q Consensus       205 ~~~----------------------------~~----~~~~i~aP~L~~L~l~~~~--------~~~~l~~L~~L~L~~~  244 (520)
                      +..                            ..    +.+.-..++|++|.+....        .+..+++|++|++.++
T Consensus       245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             ccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            321                            00    0001135788888875311        1357888999888876


Q ss_pred             ccchhHHHHHHhCCcccceeeccc--------ccccccc-----ccccccccEEEeecCCchh-----HHhcCCCCccEe
Q 039643          245 VLEDQEFHELISKFPLLEDLSVSS--------SQPLERV-----KFSSNLLKRVAFLFCRSLR-----AVDLDTPNLLSF  306 (520)
Q Consensus       245 ~~~~~~~~~ll~~l~~L~~L~L~~--------~~~l~~~-----~~~f~~L~~L~L~~c~~l~-----~lL~~~P~L~~L  306 (520)
                       +++..+..+..++++|+.|.|..        +..+...     ...+++|++|.+. |..+.     .+...+|+|+.|
T Consensus       325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L  402 (594)
T 2p1m_B          325 -IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRF  402 (594)
T ss_dssp             -GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEE
T ss_pred             -cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCccee
Confidence             54555666777789999998843        2222211     1135678888554 34432     333467888888


Q ss_pred             Eec
Q 039643          307 TFE  309 (520)
Q Consensus       307 ~l~  309 (520)
                      ++.
T Consensus       403 ~L~  405 (594)
T 2p1m_B          403 RLC  405 (594)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            887

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.49  E-value=8.5e-13  Score=134.03  Aligned_cols=246  Identities=14%  Similarity=0.134  Sum_probs=146.8

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      -.++++|++...     ....+|. +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-.  . +..++.|+
T Consensus        65 ~~~L~~L~l~~n-----~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~  135 (347)
T 4fmz_A           65 LTNLEYLNLNGN-----QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMY  135 (347)
T ss_dssp             CTTCCEEECCSS-----CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCC
T ss_pred             cCCccEEEccCC-----ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCcee
Confidence            356777777553     1223444 6667778888888776654455777788888888777763211  1 56778888


Q ss_pred             eeeeeccCCccee-ccccccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhH
Q 039643          177 DLSLRYTLGLKFF-SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQE  250 (520)
Q Consensus       177 ~L~L~~c~~l~~l-~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~  250 (520)
                      .|++.+|.....+ .+.++++|+.|++.++...........++|+.|.+..     ...+..+++|+.++++++.+++..
T Consensus       136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~  215 (347)
T 4fmz_A          136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT  215 (347)
T ss_dssp             EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence            8888777543321 2445677888888777642111123567777777752     122566777777777776655421


Q ss_pred             HHHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccC-CCcE
Q 039643          251 FHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN  327 (520)
Q Consensus       251 ~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~  327 (520)
                      .   +..+++|+.|.+++|.... +....+++|++|+++++.-.. ..+..+|+|+.|+++++.+..+  ..+.. ..++
T Consensus       216 ~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  290 (347)
T 4fmz_A          216 P---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN  290 (347)
T ss_dssp             G---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             h---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence            1   6677788888887766421 112235677888777653222 4456777888888877766543  11111 1233


Q ss_pred             -EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          328 -VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       328 -v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                       +.+.++.+.+.+       ...+.+++.|+.|.+..
T Consensus       291 ~L~L~~n~l~~~~-------~~~l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          291 SLFLNNNQLGNED-------MEVIGGLTNLTTLFLSQ  320 (347)
T ss_dssp             EEECCSSCCCGGG-------HHHHHTCTTCSEEECCS
T ss_pred             EEECcCCcCCCcC-------hhHhhccccCCEEEccC
Confidence             444555554332       34456777788777774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.48  E-value=2.9e-13  Score=137.29  Aligned_cols=197  Identities=19%  Similarity=0.186  Sum_probs=121.7

Q ss_pred             HHHHHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHH
Q 039643           91 WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLI  169 (520)
Q Consensus        91 Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Ll  169 (520)
                      -+..+...+|++|++...     ....+|..++.+++|++|+|++|.+ ..|..+..+++|++|+|+++.+.  .++.-+
T Consensus        74 ~l~~~~~~~l~~L~L~~n-----~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l  146 (328)
T 4fcg_A           74 LLEDATQPGRVALELRSV-----PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASI  146 (328)
T ss_dssp             HHHHHTSTTCCEEEEESS-----CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGG
T ss_pred             HHhcccccceeEEEccCC-----CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHH
Confidence            334444589999999875     2337899999999999999999876 44777899999999999999875  334457


Q ss_pred             hcCCCcceeeeeccCCccee--c---------cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcce
Q 039643          170 AECCSLEDLSLRYTLGLKFF--S---------VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKK  238 (520)
Q Consensus       170 s~CP~LE~L~L~~c~~l~~l--~---------I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~  238 (520)
                      .+++.|+.|+|.+|.....+  .         +.++++|+.|+++++...  .+              +..+..+++|++
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~l--------------p~~l~~l~~L~~  210 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SL--------------PASIANLQNLKS  210 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CC--------------CGGGGGCTTCCE
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cc--------------hHhhcCCCCCCE
Confidence            88999999999998643322  1         223788999999888642  10              112344455555


Q ss_pred             EEecccccchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccC
Q 039643          239 LHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVR  312 (520)
Q Consensus       239 L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~  312 (520)
                      |+++++.+++  +...++++++|+.|++++|.......   ..+++|++|+|++|....   ..+..+|+|+.|+++++.
T Consensus       211 L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          211 LKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             EEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             EEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            5555444432  11124445555555555544322111   123445555555443322   223445555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.44  E-value=1.5e-12  Score=132.19  Aligned_cols=268  Identities=15%  Similarity=0.085  Sum_probs=184.5

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      -.++++|++...     ....+|. +..+++|++|+|++|.+...+.+..+++|++|+|.++.+.+-  + -+.+++.|+
T Consensus        43 l~~L~~L~l~~~-----~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~  113 (347)
T 4fmz_A           43 LESITKLVVAGE-----KVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLR  113 (347)
T ss_dssp             HTTCSEEECCSS-----CCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCS
T ss_pred             cccccEEEEeCC-----ccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCC
Confidence            367888888664     2234443 677899999999999775433388999999999999988431  1 268899999


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCC-ceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSE-LESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQE  250 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~  250 (520)
                      +|++.+|.-.....+.++++|+.|+++++..... ......++|++|.+..     ...+..+++|++++++++.+++..
T Consensus       114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred             EEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc
Confidence            9999998632222255689999999999854221 1234578999999862     223678999999999988776422


Q ss_pred             HHHHHhCCcccceeecccccccccc-ccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccC-CCcE
Q 039643          251 FHELISKFPLLEDLSVSSSQPLERV-KFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN  327 (520)
Q Consensus       251 ~~~ll~~l~~L~~L~L~~~~~l~~~-~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~  327 (520)
                         .+..+++|+.|.++++...... ...+++|++|++++|.... ..+..+|+|+.|++.++.+..+  ..+.. ..++
T Consensus       194 ---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  268 (347)
T 4fmz_A          194 ---PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLK  268 (347)
T ss_dssp             ---GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             ---cccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcC
Confidence               1788999999999987642211 2346789999998864432 3378899999999999877654  22222 2244


Q ss_pred             -EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643          328 -VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       328 -v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                       +.+.++.+.+-         ..+.+++.|+.|.+.. +......+..+.       .++ .|++|.+..
T Consensus       269 ~L~l~~n~l~~~---------~~~~~l~~L~~L~L~~-n~l~~~~~~~l~-------~l~-~L~~L~L~~  320 (347)
T 4fmz_A          269 MLNVGSNQISDI---------SVLNNLSQLNSLFLNN-NQLGNEDMEVIG-------GLT-NLTTLFLSQ  320 (347)
T ss_dssp             EEECCSSCCCCC---------GGGGGCTTCSEEECCS-SCCCGGGHHHHH-------TCT-TCSEEECCS
T ss_pred             EEEccCCccCCC---------hhhcCCCCCCEEECcC-CcCCCcChhHhh-------ccc-cCCEEEccC
Confidence             44555555432         2357888999999884 332333333332       246 888888873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.39  E-value=5.7e-12  Score=133.70  Aligned_cols=143  Identities=19%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             cccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643          122 IYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV  201 (520)
Q Consensus       122 l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~  201 (520)
                      +..+++|++|+|++|.+...+.+.++++|++|+|.++.+.+-.  . +++++.|+.|++.+|.......+.++++|+.|+
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~  140 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE  140 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEE
Confidence            3445555666665554432112555555666665555542111  0 455555555555555311111133455555555


Q ss_pred             EecccCCCCceeeeCCceeEEEecc----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          202 IVDYSRSSELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       202 I~~~~~~~~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      ++++....-......++|+.|.+..    ...+.++++|++|+++++.++..   ..+..+++|+.|.++++.
T Consensus       141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred             CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC---hhhccCCCCCEEEecCCc
Confidence            5555421111112334455554431    11234445555555544443321   123444555555554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=1.3e-11  Score=131.01  Aligned_cols=243  Identities=13%  Similarity=0.112  Sum_probs=146.9

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      -.++++|++...     ....+|+ +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-.  . +..++.|+
T Consensus        67 l~~L~~L~Ls~n-----~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~  137 (466)
T 1o6v_A           67 LNNLTQINFSNN-----QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLN  137 (466)
T ss_dssp             CTTCCEEECCSS-----CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCS
T ss_pred             hcCCCEEECCCC-----ccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCC
Confidence            467899988664     2234455 7788999999999987744233788999999999988873211  1 67889999


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEF  251 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~  251 (520)
                      .|++.+|.....-.+.++++|+.|.+........ .....++|+.|.+..     ...+..+++|++|+++++.+++...
T Consensus       138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  216 (466)
T 1o6v_A          138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP  216 (466)
T ss_dssp             EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             EEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc
Confidence            9999988522111344577888888764332111 123457777777752     2235667777888777766654221


Q ss_pred             HHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccC-CCcE-
Q 039643          252 HELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-  327 (520)
Q Consensus       252 ~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-  327 (520)
                         ++.+++|+.|.++++..-. +.-..+++|++|++++|.... ..+..+|+|+.|+++++.+..+ .. +.. ..++ 
T Consensus       217 ---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~  291 (466)
T 1o6v_A          217 ---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SP-LAGLTALTN  291 (466)
T ss_dssp             ---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSE
T ss_pred             ---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc-cc-ccCCCccCe
Confidence               5667777777777765311 111234567777777653322 2256677777777777765543 11 111 1232 


Q ss_pred             EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          328 VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       328 v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                      +.+..+.+.+-.        . +.+++.|+.|.+..
T Consensus       292 L~L~~n~l~~~~--------~-~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          292 LELNENQLEDIS--------P-ISNLKNLTYLTLYF  318 (466)
T ss_dssp             EECCSSCCSCCG--------G-GGGCTTCSEEECCS
T ss_pred             EEcCCCcccCch--------h-hcCCCCCCEEECcC
Confidence            334444444321        1 45667777777663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=139.18  Aligned_cols=276  Identities=16%  Similarity=0.071  Sum_probs=179.3

Q ss_pred             CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .+++.|++...     ....+ |..+..+++|++|+|++|.+..  |..+.++++|++|+|+++.+.. .....+.+++.
T Consensus        32 ~~l~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKN-----RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSN  105 (477)
T ss_dssp             TTCSEEECCSS-----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTT
T ss_pred             CCCcEEECCCC-----ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCCCC
Confidence            56888888664     12233 4567778999999999986633  5678899999999999887632 11123567899


Q ss_pred             cceeeeeccCCcc--eeccccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecc
Q 039643          175 LEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSE  243 (520)
Q Consensus       175 LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~  243 (520)
                      |+.|+|.++....  .-.+.++++|+.|++.++....  +......++|+.|.+..       ...+.++++|+.|++..
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            9999999886322  2234568899999999876321  11223468899998862       12367888999999988


Q ss_pred             cccchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcc
Q 039643          244 IVLEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTIS  317 (520)
Q Consensus       244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~  317 (520)
                      +.++.. ....+.++++|+.|.++++..+....   ....+|++|+++++.-..   ..+..+++|+.|+++++.+..+.
T Consensus       186 n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          186 LNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             CCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             CcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence            766542 22356788999999999877543222   223489999998864322   46688999999999998766431


Q ss_pred             cccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          318 ISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       318 ~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                      ...+.. ..|+ +.+..+.+.+..       ...+.+++.|+.|.+..  +....++..      .-..++ .|++|.+.
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~--N~l~~~~~~------~~~~l~-~L~~L~l~  328 (477)
T 2id5_A          265 GSMLHELLRLQEIQLVGGQLAVVE-------PYAFRGLNYLRVLNVSG--NQLTTLEES------VFHSVG-NLETLILD  328 (477)
T ss_dssp             TTSCTTCTTCCEEECCSSCCSEEC-------TTTBTTCTTCCEEECCS--SCCSCCCGG------GBSCGG-GCCEEECC
T ss_pred             hhhccccccCCEEECCCCccceEC-------HHHhcCcccCCEEECCC--CcCceeCHh------HcCCCc-ccCEEEcc
Confidence            111221 1243 445555555331       23456788899998884  332223221      122346 88888887


Q ss_pred             E
Q 039643          396 V  396 (520)
Q Consensus       396 ~  396 (520)
                      .
T Consensus       329 ~  329 (477)
T 2id5_A          329 S  329 (477)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.36  E-value=5.2e-13  Score=150.65  Aligned_cols=196  Identities=17%  Similarity=0.108  Sum_probs=108.2

Q ss_pred             ccCcccccCCCccEEEEeccccC--CCc--ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcce--ec
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLD--EPL--IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKF--FS  190 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~--~p~--~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~--l~  190 (520)
                      .+|..+..+++|++|+|++|.+.  .|.  .+..+++|++|+|+++.+.......++..++.|++|++++|.....  ..
T Consensus        91 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence            35566666677777777776553  233  5666677777777666552111111224566677777666642111  11


Q ss_pred             ---cccccccceEEEecccCCCCceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCccc
Q 039643          191 ---VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLL  261 (520)
Q Consensus       191 ---I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L  261 (520)
                         +.++++|+.|+++++...........++|++|.+..      ...+.++++|++|+++++.+++. +...++++++|
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L  249 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTEL  249 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSC
T ss_pred             hhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCC
Confidence               344667777777666531111113456777777641      12256777778888777776543 33556777778


Q ss_pred             ceeeccccccccccc-cccccccEEEeecCCchh----HHhcCCCCccEeEecccCC
Q 039643          262 EDLSVSSSQPLERVK-FSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       262 ~~L~L~~~~~l~~~~-~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~  313 (520)
                      +.|.+++|......+ ..+.+|++|++.+|....    .+...+++|+.|+++++.+
T Consensus       250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred             CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence            888777765422111 145567777766543221    1212246667776666644

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.35  E-value=3.9e-12  Score=140.54  Aligned_cols=273  Identities=8%  Similarity=0.010  Sum_probs=178.8

Q ss_pred             CCceEEEEEecCCCCCcccc-----------------cCcccc--cCCCccEEEEecccc--CCCcccCCCCCCCEEEec
Q 039643           98 NGVKELHIVVESSPHESAYT-----------------LPQAIY--SAKLLTTLVLNGCRL--DEPLIAINLNSLKNLSLQ  156 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~-----------------LP~~l~--~~~sL~~L~L~~c~l--~~p~~~~~l~sLk~L~L~  156 (520)
                      .++++|++....    ....                 +|..+.  .+++|++|+|++|.+  ..|..+.++++|++|+|+
T Consensus       206 ~~L~~L~Ls~n~----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          206 TKLRQFYMGNSP----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             TTCCEEEEESCC----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             cCCCEEECcCCc----cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            689999998752    1111                 899999  999999999999965  347889999999999999


Q ss_pred             cee-cChHHHHHHHh------cCCCcceeeeeccCCcc-ee--ccccccccceEEEecccCC--CCceeeeCCceeEEEe
Q 039643          157 RVY-ANEQMVHNLIA------ECCSLEDLSLRYTLGLK-FF--SVSKAHKLKNMVIVDYSRS--SELESIVAPSLQQLTL  224 (520)
Q Consensus       157 ~v~-~~~~~l~~Lls------~CP~LE~L~L~~c~~l~-~l--~I~~~~~Lk~L~I~~~~~~--~~~~~i~aP~L~~L~l  224 (520)
                      ++. +.+..++.-+.      .++.|+.|++.+|.... +-  .+.++++|+.|+++++...  .+ .....++|++|.+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            998 66534444333      46999999999986322 11  3556899999999998742  12 2234578888887


Q ss_pred             cc------ccccCCCCC-cceEEecccccchhHHHHHHhC--Ccccceeecccccccccccc----------ccccccEE
Q 039643          225 VR------VIVVATCPN-LKKLHLSEIVLEDQEFHELISK--FPLLEDLSVSSSQPLERVKF----------SSNLLKRV  285 (520)
Q Consensus       225 ~~------~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~--l~~L~~L~L~~~~~l~~~~~----------~f~~L~~L  285 (520)
                      ..      +..+..+++ |++|+++++.++.  +...+..  +++|+.|.++++......+.          ...+|++|
T Consensus       361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L  438 (636)
T 4eco_A          361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI  438 (636)
T ss_dssp             CSSEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred             CCCccccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence            52      335677888 9999999887762  2233344  34899999998774221111          23478999


Q ss_pred             EeecCCchh---HHhcCCCCccEeEecccCCCCcccccccCC--------CcE-EEEeccccccChhhHHHHHHHHH--h
Q 039643          286 AFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQC--------PWN-VFFVHEHDVGDIDNWYLKLKEFL--G  351 (520)
Q Consensus       286 ~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~--------~L~-v~~~~~~~~g~~~~l~~~~~~~l--~  351 (520)
                      +++++.-..   ..+..+|+|+.|+++++.+..+........        .++ +.+..+.+. ++       ...+  .
T Consensus       439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-------p~~~~~~  510 (636)
T 4eco_A          439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL-------SDDFRAT  510 (636)
T ss_dssp             ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC-------CGGGSTT
T ss_pred             ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc-------Chhhhhc
Confidence            998754322   555678999999999887664311111110        233 445555555 22       2223  3


Q ss_pred             ccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          352 ASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       352 n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                      +++.|+.|.+.. +...+ ++..+.       .++ .|++|.+.
T Consensus       511 ~l~~L~~L~Ls~-N~l~~-ip~~~~-------~l~-~L~~L~Ls  544 (636)
T 4eco_A          511 TLPYLVGIDLSY-NSFSK-FPTQPL-------NSS-TLKGFGIR  544 (636)
T ss_dssp             TCTTCCEEECCS-SCCSS-CCCGGG-------GCS-SCCEEECC
T ss_pred             cCCCcCEEECCC-CCCCC-cChhhh-------cCC-CCCEEECC
Confidence            777888888774 22222 444432       245 67777763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.35  E-value=1.6e-12  Score=142.04  Aligned_cols=274  Identities=18%  Similarity=0.106  Sum_probs=182.8

Q ss_pred             CceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           99 GVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .+++|++...     ....+|+ .+..+++|++|+|++|.+. .|..+.++++|++|+|.++.+.+ .....+.++|.|+
T Consensus       255 ~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~  328 (606)
T 3t6q_A          255 SVESINLQKH-----YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLT  328 (606)
T ss_dssp             EEEEEECTTC-----CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCS
T ss_pred             ceeEEEeecC-----ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc-CchhhhhccCcCC
Confidence            5777776543     2334544 4667899999999999774 47788899999999999998742 1123467899999


Q ss_pred             eeeeeccCCcc---eeccccccccceEEEecccCCC----CceeeeCCceeEEEecc-------ccccCCCCCcceEEec
Q 039643          177 DLSLRYTLGLK---FFSVSKAHKLKNMVIVDYSRSS----ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLS  242 (520)
Q Consensus       177 ~L~L~~c~~l~---~l~I~~~~~Lk~L~I~~~~~~~----~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~  242 (520)
                      .|++.+|....   .-.+.++++|+.|+++++....    .......++|++|.+..       +..+..+++|++|+++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence            99999986322   2235568999999999987421    11123568999999862       3356789999999999


Q ss_pred             ccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh------HHhcCCCCccEeEecccCC
Q 039643          243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR------AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~------~lL~~~P~L~~L~l~~~~~  313 (520)
                      ++.+++......++++++|+.|.++++....  +. -..+++|++|+++++....      ..+..+++|+.|+++++.+
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence            8877643333457889999999999987522  11 1236789999998865322      3467899999999999877


Q ss_pred             CCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccc
Q 039643          314 PTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGN  391 (520)
Q Consensus       314 ~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~  391 (520)
                      ..+....+.. ..++ +.+..+.+.+.+       ...+.+++.| .|.+.. +...+..+..+.       .++ .|++
T Consensus       489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~-------~l~-~L~~  551 (606)
T 3t6q_A          489 SSIDQHAFTSLKMMNHVDLSHNRLTSSS-------IEALSHLKGI-YLNLAS-NHISIILPSLLP-------ILS-QQRT  551 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCGGG-------GGGGTTCCSC-EEECCS-SCCCCCCGGGHH-------HHH-TSSE
T ss_pred             CccChhhhccccCCCEEECCCCccCcCC-------hhHhCccccc-EEECcC-CcccccCHhhcc-------cCC-CCCE
Confidence            6431111222 2244 556677766543       2344566666 555553 232333333332       246 7888


Q ss_pred             eEEE
Q 039643          392 MRLI  395 (520)
Q Consensus       392 L~l~  395 (520)
                      |.+.
T Consensus       552 L~l~  555 (606)
T 3t6q_A          552 INLR  555 (606)
T ss_dssp             EECT
T ss_pred             EeCC
Confidence            8887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=1.8e-12  Score=130.90  Aligned_cols=215  Identities=19%  Similarity=0.247  Sum_probs=128.1

Q ss_pred             HHHHHHHh-CCceEEEEEecCCCCCcccccCcccccC--CCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHH
Q 039643           90 KWIGLAVG-NGVKELHIVVESSPHESAYTLPQAIYSA--KLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMV  165 (520)
Q Consensus        90 ~Wl~~a~~-~~VkeL~L~~~~~~~~~~~~LP~~l~~~--~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l  165 (520)
                      +|-..+.. ..++.+++....      .. |..+...  +.++.|+++++.+.. ++....+++|++|+|+++.+++..+
T Consensus        38 ~W~~~~~~~~~~~~l~l~~~~------~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~  110 (336)
T 2ast_B           38 RWYRLASDESLWQTLDLTGKN------LH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL  110 (336)
T ss_dssp             HHHHHHTCSTTSSEEECTTCB------CC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred             HHHHHhcCchhheeecccccc------CC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence            45555443 235666553320      00 3333444  677777777765532 3445667777777777777766667


Q ss_pred             HHHHhcCCCcceeeeeccCCcc--eeccccccccceEEEecccCCCC----ceeeeCCceeEEEeccc---------ccc
Q 039643          166 HNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSSE----LESIVAPSLQQLTLVRV---------IVV  230 (520)
Q Consensus       166 ~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~~----~~~i~aP~L~~L~l~~~---------~~~  230 (520)
                      ...+.+||.|+.|++.+|....  .-.+.++++|++|++++|.....    ...-..|+|++|.+.+.         ..+
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  190 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV  190 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence            7777777777777777774211  11233467777777777732111    11223566666665421         113


Q ss_pred             CCCC-CcceEEeccc--ccchhHHHHHHhCCcccceeecccccccccc----ccccccccEEEeecCCchh----HHhcC
Q 039643          231 ATCP-NLKKLHLSEI--VLEDQEFHELISKFPLLEDLSVSSSQPLERV----KFSSNLLKRVAFLFCRSLR----AVDLD  299 (520)
Q Consensus       231 ~~l~-~L~~L~L~~~--~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~----~~~f~~L~~L~L~~c~~l~----~lL~~  299 (520)
                      ..++ +|++|+++++  .+++..+...+.++++|+.|++++|..+...    -..+++|++|++++|....    ..+..
T Consensus       191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~  270 (336)
T 2ast_B          191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  270 (336)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence            5677 8888888776  4555556667777888888888877642211    1234678888887775332    24566


Q ss_pred             CCCccEeEeccc
Q 039643          300 TPNLLSFTFESV  311 (520)
Q Consensus       300 ~P~L~~L~l~~~  311 (520)
                      +|+|+.|++.++
T Consensus       271 ~~~L~~L~l~~~  282 (336)
T 2ast_B          271 IPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeccCc
Confidence            788888888766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.34  E-value=5.9e-14  Score=141.83  Aligned_cols=82  Identities=22%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             cCCCCCcceEEecccc-cchhHHHHHHhCCcccceeeccccccccccc----cccccccEEEeecCCchh---HHhcCCC
Q 039643          230 VATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSSQPLERVK----FSSNLLKRVAFLFCRSLR---AVDLDTP  301 (520)
Q Consensus       230 ~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~----~~f~~L~~L~L~~c~~l~---~lL~~~P  301 (520)
                      +..+++|++|+++++. +++..+ ..+.++++|+.|.+++|..+.+.+    ..+++|++|++.+|-...   .+...+ 
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l-  295 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL-  295 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHS-
T ss_pred             HhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhC-
Confidence            3568899999998877 555433 356788999999999886443221    246789999998872211   222334 


Q ss_pred             CccEeEecccCCCC
Q 039643          302 NLLSFTFESVRIPT  315 (520)
Q Consensus       302 ~L~~L~l~~~~~~~  315 (520)
                        +.|++..+.+..
T Consensus       296 --~~L~l~~n~l~~  307 (336)
T 2ast_B          296 --PHLQINCSHFTT  307 (336)
T ss_dssp             --TTSEESCCCSCC
T ss_pred             --cceEEecccCcc
Confidence              445577776554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.33  E-value=2.7e-12  Score=140.22  Aligned_cols=236  Identities=13%  Similarity=0.028  Sum_probs=163.6

Q ss_pred             CccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEE
Q 039643          127 LLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVI  202 (520)
Q Consensus       127 sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I  202 (520)
                      +|++|+++++.+..  +..+..+++|++|+|+++.+.  .++.-+.+++.|+.|++.+|..  .....+.++++|+.|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            79999999987743  344789999999999999874  2223367899999999999863  22334566899999999


Q ss_pred             ecccCCC---CceeeeCCceeEEEecc---------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          203 VDYSRSS---ELESIVAPSLQQLTLVR---------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       203 ~~~~~~~---~~~~i~aP~L~~L~l~~---------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      .++....   .......++|++|.+..         +..+..+++|++|+++++.+++. ....+.++++|+.|+++++.
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCc
Confidence            9986421   11133578999999862         23578899999999998876542 23457889999999999987


Q ss_pred             ccc--cc--ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCccc---ccccC-CCcE-EEEeccccccC
Q 039643          271 PLE--RV--KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISI---SASHQ-CPWN-VFFVHEHDVGD  338 (520)
Q Consensus       271 ~l~--~~--~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~---~~l~~-~~L~-v~~~~~~~~g~  338 (520)
                      ...  +.  -..+++|+.|++++|....   ..+..+|+|+.|+++++.+.....   ..+.. ..++ +.+.++.+.+.
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            522  11  1245789999998865422   456789999999999997653100   11111 1244 45566666543


Q ss_pred             hhhHHHHHHHHHhccccccceEEEecccccccccc
Q 039643          339 IDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPF  373 (520)
Q Consensus       339 ~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~  373 (520)
                      +       ...+.+++.|+.|.+.. +...+..+.
T Consensus       492 ~-------~~~~~~l~~L~~L~Ls~-N~l~~~~~~  518 (606)
T 3t6q_A          492 D-------QHAFTSLKMMNHVDLSH-NRLTSSSIE  518 (606)
T ss_dssp             C-------TTTTTTCTTCCEEECCS-SCCCGGGGG
T ss_pred             C-------hhhhccccCCCEEECCC-CccCcCChh
Confidence            2       23457889999999985 333343333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.32  E-value=3.3e-12  Score=139.60  Aligned_cols=254  Identities=14%  Similarity=0.061  Sum_probs=173.4

Q ss_pred             cccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643          122 IYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV  201 (520)
Q Consensus       122 l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~  201 (520)
                      +..+++|+.|+++++.+...+.+..+++|++|++.++.+.  .++.+  .+|.|+.|++.+|.......+.++++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            6667899999999987754337788999999999999872  23333  8999999999999766666666789999999


Q ss_pred             EecccCCC----CceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643          202 IVDYSRSS----ELESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       202 I~~~~~~~----~~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      ++++....    +......++|++|.+..      +..+..+++|++|+++++.+++......+.++++|+.|++++|..
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            99886311    11123568999999862      345678999999999988776533324678899999999999875


Q ss_pred             cccc---ccccccccEEEeecCCchh----HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhH
Q 039643          272 LERV---KFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNW  342 (520)
Q Consensus       272 l~~~---~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l  342 (520)
                      ....   -..+++|++|++.++....    ..+..+++|+.|+++++.+..+....+.. ..++ +.+.++.+.+.+   
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---  513 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD---  513 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---
T ss_pred             CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---
Confidence            3211   1245789999998764322    34577899999999998765431111222 1243 455666666542   


Q ss_pred             HHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          343 YLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       343 ~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                          ...+.+++.|+.|.+..  +....++..+..       +|.+|++|.+.
T Consensus       514 ----~~~~~~l~~L~~L~l~~--N~l~~~p~~~~~-------l~~~L~~l~l~  553 (606)
T 3vq2_A          514 ----SSHYNQLYSLSTLDCSF--NRIETSKGILQH-------FPKSLAFFNLT  553 (606)
T ss_dssp             ----GGGTTTCTTCCEEECTT--SCCCCEESCGGG-------SCTTCCEEECC
T ss_pred             ----HHHccCCCcCCEEECCC--CcCcccCHhHhh-------hcccCcEEEcc
Confidence                33456788888888874  433344444332       22047777777

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.32  E-value=8.7e-12  Score=140.67  Aligned_cols=147  Identities=14%  Similarity=0.079  Sum_probs=99.5

Q ss_pred             ccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643          123 YSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV  201 (520)
Q Consensus       123 ~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~  201 (520)
                      ..+++|++|+|++|.+.. ++.+..+++|++|+|.++.+.+ .+...+..|+.|+.|++.+|..........+++|++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            567889999998886633 3448889999999999988753 34556788999999999988632222222478888888


Q ss_pred             EecccCC--CCceeee-CCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          202 IVDYSRS--SELESIV-APSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       202 I~~~~~~--~~~~~i~-aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +.++...  .+..... .++|++|.+..       +..+.++++|++|+++.+.+++......+.++++|+.|.++++.
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            8887631  1111122 37888887752       33466777888888877766543344456677777777777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.30  E-value=2.3e-11  Score=128.02  Aligned_cols=279  Identities=14%  Similarity=0.068  Sum_probs=161.9

Q ss_pred             CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHH-HHHhcCC
Q 039643           98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVH-NLIAECC  173 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~-~Lls~CP  173 (520)
                      .+++.|++....    ....+ |..+..+++|++|+|++|.+..  |..+.++++|++|+|.++.+.+.... ..+..++
T Consensus        54 ~~L~~L~L~~n~----~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           54 QDLQFLKVEQQT----PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             TTCCEEECCCCS----TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             ccccEEECcCCc----ccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence            456666665431    11133 3445567778888887776532  45667778888888887776432222 2356678


Q ss_pred             CcceeeeeccCC--cceec-cccccccceEEEecccCCC--Cc--eeeeCCceeEEEeccc---------------cccC
Q 039643          174 SLEDLSLRYTLG--LKFFS-VSKAHKLKNMVIVDYSRSS--EL--ESIVAPSLQQLTLVRV---------------IVVA  231 (520)
Q Consensus       174 ~LE~L~L~~c~~--l~~l~-I~~~~~Lk~L~I~~~~~~~--~~--~~i~aP~L~~L~l~~~---------------~~~~  231 (520)
                      .|+.|+|.++..  ..... +.++++|+.|+++++....  +.  .....++|+.|.+...               ..+.
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  209 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF  209 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence            888888887752  21111 4457788888887776321  11  1122357777776421               0123


Q ss_pred             CCCCcceEEecccccchhHHHHHHh--CCcccceeecccccccc------------c---cccccccccEEEeecCCchh
Q 039643          232 TCPNLKKLHLSEIVLEDQEFHELIS--KFPLLEDLSVSSSQPLE------------R---VKFSSNLLKRVAFLFCRSLR  294 (520)
Q Consensus       232 ~l~~L~~L~L~~~~~~~~~~~~ll~--~l~~L~~L~L~~~~~l~------------~---~~~~f~~L~~L~L~~c~~l~  294 (520)
                      .+++|++|+++++.+++.....+..  ..++++.|.++++....            .   .+....+|++|+++++....
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence            4578999999988887654433332  23788888888764311            0   01123578888888754322


Q ss_pred             ---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEecccccc
Q 039643          295 ---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIR  369 (520)
Q Consensus       295 ---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~  369 (520)
                         ..+..+++|+.|+++++.+..+....+.. ..++ +.+..+.+.+.+       ...+.+++.|+.|.+.. +....
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~-N~l~~  361 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-------SRMFENLDKLEVLDLSY-NHIRA  361 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-------GGGGTTCTTCCEEECCS-SCCCE
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-------hhHhcCcccCCEEECCC-Ccccc
Confidence               45677889999999888766431111211 1243 445555554331       33457788888888874 22222


Q ss_pred             ccccccccccccCCCCcccccceEEEE
Q 039643          370 QMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       370 ~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                      ..+       .+-..++ .|++|.+..
T Consensus       362 ~~~-------~~~~~l~-~L~~L~L~~  380 (455)
T 3v47_A          362 LGD-------QSFLGLP-NLKELALDT  380 (455)
T ss_dssp             ECT-------TTTTTCT-TCCEEECCS
T ss_pred             cCh-------hhccccc-cccEEECCC
Confidence            222       2333456 888888874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.29  E-value=7.3e-12  Score=129.50  Aligned_cols=117  Identities=13%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             Ccccceeeccccccccc-cccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCccccccc-CCCcE-EEEe
Q 039643          258 FPLLEDLSVSSSQPLER-VKFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASH-QCPWN-VFFV  331 (520)
Q Consensus       258 l~~L~~L~L~~~~~l~~-~~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~-~~~L~-v~~~  331 (520)
                      .++|+.|.++++..-.. .-..+++|++|+++++....   ..+..+|+|+.|+++++.+..+ ..... ...++ +.+.
T Consensus       225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECC
T ss_pred             cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECC
Confidence            35666666666543211 11234567777776643221   4456677777777777765543 11111 11233 3445


Q ss_pred             ccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          332 HEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       332 ~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                      ++.+.+-        ...+.+++.|+.|.+..  +....+       +  ...++ .|++|.+.
T Consensus       304 ~n~l~~~--------~~~~~~l~~L~~L~L~~--N~i~~~-------~--~~~~~-~L~~L~l~  347 (390)
T 3o6n_A          304 HNHLLHV--------ERNQPQFDRLENLYLDH--NSIVTL-------K--LSTHH-TLKNLTLS  347 (390)
T ss_dssp             SSCCCCC--------GGGHHHHTTCSEEECCS--SCCCCC-------C--CCTTC-CCSEEECC
T ss_pred             CCcceec--------CccccccCcCCEEECCC--Ccccee-------C--chhhc-cCCEEEcC
Confidence            5554432        11234567777777763  321111       1  22345 77777777

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.28  E-value=9.5e-12  Score=132.04  Aligned_cols=262  Identities=13%  Similarity=0.019  Sum_probs=175.3

Q ss_pred             ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS  190 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~  190 (520)
                      ...+|..+.  ++|++|+|+++.+..  +..+.++++|++|+|+++.+.+ .....+.+++.|+.|+|.++.-  +..-.
T Consensus        23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   99 (477)
T 2id5_A           23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGV   99 (477)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred             cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCccc
Confidence            345676553  589999999987743  4578899999999999987732 1122357899999999999852  21122


Q ss_pred             cccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCccc
Q 039643          191 VSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLL  261 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L  261 (520)
                      +.++++|+.|+++++....  +...-..++|++|.+..       +..+.++++|++|+++.+.++. .....+.++++|
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L  178 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGL  178 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTC
T ss_pred             ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCC
Confidence            4568999999999987421  11223568999999862       3357889999999999887764 234568899999


Q ss_pred             ceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEecc
Q 039643          262 EDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHE  333 (520)
Q Consensus       262 ~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~  333 (520)
                      +.|.+.++..-.  +. -..+.+|++|++++|....   ......++|+.|+++++.+..+....+.. ..|+ +.+.++
T Consensus       179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            999999877422  11 1235689999999875543   22234459999999998776541111222 2243 445555


Q ss_pred             ccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643          334 HDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       334 ~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                      .+.+..       ...+.+++.|+.|.+.. +......+       .+-..++ .|++|.+..
T Consensus       259 ~l~~~~-------~~~~~~l~~L~~L~L~~-n~l~~~~~-------~~~~~l~-~L~~L~L~~  305 (477)
T 2id5_A          259 PISTIE-------GSMLHELLRLQEIQLVG-GQLAVVEP-------YAFRGLN-YLRVLNVSG  305 (477)
T ss_dssp             CCCEEC-------TTSCTTCTTCCEEECCS-SCCSEECT-------TTBTTCT-TCCEEECCS
T ss_pred             cCCccC-------hhhccccccCCEEECCC-CccceECH-------HHhcCcc-cCCEEECCC
Confidence            555331       23456788899998874 23222222       2333457 888888874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=2.4e-11  Score=138.28  Aligned_cols=217  Identities=11%  Similarity=0.031  Sum_probs=149.3

Q ss_pred             CCceEEEEEecCCCCC----ccc---------ccCcccc--cCCCccEEEEecccc--CCCcccCCCCCCCEEEeccee-
Q 039643           98 NGVKELHIVVESSPHE----SAY---------TLPQAIY--SAKLLTTLVLNGCRL--DEPLIAINLNSLKNLSLQRVY-  159 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~----~~~---------~LP~~l~--~~~sL~~L~L~~c~l--~~p~~~~~l~sLk~L~L~~v~-  159 (520)
                      .+++.|+|........    ...         .+|..+.  .+++|++|+|++|.+  ..|..+.++++|+.|+|+++. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            6899999987521000    000         3899987  999999999999865  347889999999999999998 


Q ss_pred             cChHHHHHHH-------hcCCCcceeeeeccCCcc-ee--ccccccccceEEEecccCCCCceeeeCCceeEEEecc---
Q 039643          160 ANEQMVHNLI-------AECCSLEDLSLRYTLGLK-FF--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR---  226 (520)
Q Consensus       160 ~~~~~l~~Ll-------s~CP~LE~L~L~~c~~l~-~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~---  226 (520)
                      +.+..++.-+       ..+|.|+.|+|.+|.... +-  .+.++++|+.|+++++....-......++|+.|.+..   
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l  607 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI  607 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCC
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCcc
Confidence            6652333322       356799999999986332 11  3556899999999998753111223568899998862   


Q ss_pred             ---ccccCCCCC-cceEEecccccchhHHHHHHhCCc--ccceeecccccccccc---c-----cccccccEEEeecCCc
Q 039643          227 ---VIVVATCPN-LKKLHLSEIVLEDQEFHELISKFP--LLEDLSVSSSQPLERV---K-----FSSNLLKRVAFLFCRS  292 (520)
Q Consensus       227 ---~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~l~--~L~~L~L~~~~~l~~~---~-----~~f~~L~~L~L~~c~~  292 (520)
                         +..+..+++ |+.|+++++.++.  +...+..++  +|+.|.++++......   .     ....+|+.|+|+++..
T Consensus       608 ~~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L  685 (876)
T 4ecn_A          608 EEIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI  685 (876)
T ss_dssp             SCCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred             ccchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence               334677888 9999999887762  223444444  4999999887642211   1     1224788999887543


Q ss_pred             hh---HHhcCCCCccEeEecccCCCCc
Q 039643          293 LR---AVDLDTPNLLSFTFESVRIPTI  316 (520)
Q Consensus       293 l~---~lL~~~P~L~~L~l~~~~~~~~  316 (520)
                      ..   .+...+|+|+.|+++++.+..+
T Consensus       686 ~~lp~~~~~~l~~L~~L~Ls~N~L~~i  712 (876)
T 4ecn_A          686 QKFPTELFATGSPISTIILSNNLMTSI  712 (876)
T ss_dssp             CSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred             CccCHHHHccCCCCCEEECCCCcCCcc
Confidence            22   4556788999999988876643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.27  E-value=1.2e-11  Score=124.52  Aligned_cols=211  Identities=16%  Similarity=0.085  Sum_probs=136.5

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEec-ccc--CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG-CRL--DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~-c~l--~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .+|++|++....  -...+.+|..+..+++|++|+|++ +.+  ..|..+..+++|++|+|+++.+.+ .++..+..++.
T Consensus        50 ~~l~~L~L~~~~--l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCC--CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTT
T ss_pred             ceEEEEECCCCC--ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCC
Confidence            579999997752  112237899999999999999995 555  347788999999999999987731 22234678899


Q ss_pred             cceeeeeccCC--cceeccccccccceEEEecccCC--CCceeeeCC-ceeEEEecc-------ccccCCCCCcceEEec
Q 039643          175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRS--SELESIVAP-SLQQLTLVR-------VIVVATCPNLKKLHLS  242 (520)
Q Consensus       175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~--~~~~~i~aP-~L~~L~l~~-------~~~~~~l~~L~~L~L~  242 (520)
                      |+.|+++++..  ...-.+.++++|+.|+++++...  .+......+ +|++|.+..       +..+..++ |+.|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999999852  22234556899999999998742  111122333 677777642       22344454 7777777


Q ss_pred             ccccchhHHHHHHhCCcccceeecccccccc--ccccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643          243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      ++.+++. ....+.++++|+.|.++++....  +.....++|++|+++++....   ..+..+|+|+.|+++++.+
T Consensus       206 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             SSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             CCcccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            7665432 23456677777777777765321  111224567777776643321   3445666777777666643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.26  E-value=1e-11  Score=136.06  Aligned_cols=248  Identities=14%  Similarity=0.097  Sum_probs=124.0

Q ss_pred             ccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccc
Q 039643          121 AIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHK  196 (520)
Q Consensus       121 ~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~  196 (520)
                      .+..+++|++|+|++|.+.. | ..+.++++|++|+|+++.+.. ....++++++.|+.|+|++|..  +..-.+.++++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence            44455555555555554422 2 233555555555555554421 1111234555555555555531  11112334555


Q ss_pred             cceEEEecccCCCCceeeeCCceeEEEecc--ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccc
Q 039643          197 LKNMVIVDYSRSSELESIVAPSLQQLTLVR--VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLER  274 (520)
Q Consensus       197 Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~  274 (520)
                      |+.|+++++.... ......|+|+.|.+..  ...+...++|+.|+++++.++...    ....++|+.|.++++..-..
T Consensus       173 L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          173 LQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDT  247 (597)
T ss_dssp             CCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE----CSCCSCCCEEECCSSCCCCC
T ss_pred             CcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc----cccCCCCCEEECCCCCCCCC
Confidence            5556555554210 0111245555555542  112334455666666655443210    01235677777777653221


Q ss_pred             c-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHH
Q 039643          275 V-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKE  348 (520)
Q Consensus       275 ~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~  348 (520)
                      . -..+++|+.|+|+++....   ..+..+|+|+.|+++++.+..+ ...... ..|+ +.+.++.+.+-        ..
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i--------~~  318 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV--------ER  318 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC--------GG
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc--------Cc
Confidence            1 1235678888887754322   4557788888888888876644 111111 1243 44555655532        22


Q ss_pred             HHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          349 FLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       349 ~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                      .+.+++.|+.|.+..  +....+       +  ...++ .|++|.+.
T Consensus       319 ~~~~l~~L~~L~L~~--N~l~~~-------~--~~~~~-~L~~L~l~  353 (597)
T 3oja_B          319 NQPQFDRLENLYLDH--NSIVTL-------K--LSTHH-TLKNLTLS  353 (597)
T ss_dssp             GHHHHTTCSEEECCS--SCCCCC-------C--CCTTC-CCSEEECC
T ss_pred             ccccCCCCCEEECCC--CCCCCc-------C--hhhcC-CCCEEEee
Confidence            235678888888874  321111       2  22346 88888887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.25  E-value=1e-11  Score=123.92  Aligned_cols=222  Identities=14%  Similarity=0.051  Sum_probs=146.2

Q ss_pred             ccccCcccccCCCccEEEEeccccCC-Ccc-cCCCCCCCEEEecceecCh-HHHHHHHhcCCCcceeeeeccCCcc-eec
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PLI-AINLNSLKNLSLQRVYANE-QMVHNLIAECCSLEDLSLRYTLGLK-FFS  190 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~-~~~l~sLk~L~L~~v~~~~-~~l~~Lls~CP~LE~L~L~~c~~l~-~l~  190 (520)
                      ...+|..+.  ++|++|+|+++.+.. |.. +.++++|++|+|+++.+.. +.....+.+++.|+.|+++++.... .-.
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~   96 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN   96 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred             cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence            345666543  588999999987643 443 5789999999999887732 1112234568999999998885221 112


Q ss_pred             cccccccceEEEecccCCC-C--ceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcc
Q 039643          191 VSKAHKLKNMVIVDYSRSS-E--LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPL  260 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~-~--~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~  260 (520)
                      +.++++|+.|+++++.... .  ......++|++|.+..       +..+..+++|++|+++++.+++......+.++++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            4458899999998875321 1  1233568899988862       2346778999999999887765334456788999


Q ss_pred             cceeecccccccc--ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC--CCcE-EEEe
Q 039643          261 LEDLSVSSSQPLE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ--CPWN-VFFV  331 (520)
Q Consensus       261 L~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~--~~L~-v~~~  331 (520)
                      |+.|+++++....  +.. ..+++|++|+++++....   ..+..+|+|+.|+++++.+.......+..  ..++ +.+.
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence            9999999886422  111 235689999998754322   35678899999999998776431111221  1343 5566


Q ss_pred             ccccccC
Q 039643          332 HEHDVGD  338 (520)
Q Consensus       332 ~~~~~g~  338 (520)
                      .+.+.++
T Consensus       257 ~N~~~~~  263 (306)
T 2z66_A          257 QNDFACT  263 (306)
T ss_dssp             TCCEECS
T ss_pred             CCCeecc
Confidence            6666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.25  E-value=3.7e-11  Score=124.19  Aligned_cols=269  Identities=14%  Similarity=0.071  Sum_probs=166.8

Q ss_pred             CCceEEEEEecCCCCCcccccCccc-ccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAI-YSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l-~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .+++.|++...     ....+|..+ ..+++|++|+|+++.+..  +..+..+++|++|+|+++.+.. .....+.+++.
T Consensus        45 ~~l~~l~l~~~-----~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  118 (390)
T 3o6n_A           45 NNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL  118 (390)
T ss_dssp             CCCSEEEEESC-----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCceEEEecCC-----chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCC
Confidence            67788887653     234567654 457888888888876633  3467788888888888887632 11223567788


Q ss_pred             cceeeeeccCCcc--eeccccccccceEEEecccCCC--CceeeeCCceeEEEecc----ccccCCCCCcceEEeccccc
Q 039643          175 LEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVL  246 (520)
Q Consensus       175 LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~  246 (520)
                      |+.|++.++.-..  .-.+.++++|+.|+++++....  +......++|++|.+..    ...+..+++|+.++++.+.+
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence            8888888875211  1113457888888888876421  11123457888888752    23456788888888887766


Q ss_pred             chhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCccccccc-CC
Q 039643          247 EDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASH-QC  324 (520)
Q Consensus       247 ~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~-~~  324 (520)
                      +.      +...++|+.|.++++..-.-....+.+|+.|++.++.-.. ..+..+|+|+.|+++++.+..+....+. ..
T Consensus       199 ~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          199 ST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             SE------EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cc------cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence            43      2345688888888876422122335689999988754322 5567888999999988876543111111 11


Q ss_pred             CcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643          325 PWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       325 ~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                      .++ +.+..+.+.+-        .....+++.|+.|.+..  +....++..+.       .++ .|++|.+..
T Consensus       273 ~L~~L~L~~n~l~~~--------~~~~~~l~~L~~L~L~~--n~l~~~~~~~~-------~l~-~L~~L~L~~  327 (390)
T 3o6n_A          273 RLERLYISNNRLVAL--------NLYGQPIPTLKVLDLSH--NHLLHVERNQP-------QFD-RLENLYLDH  327 (390)
T ss_dssp             SCCEEECCSSCCCEE--------ECSSSCCTTCCEEECCS--SCCCCCGGGHH-------HHT-TCSEEECCS
T ss_pred             cCCEEECCCCcCccc--------CcccCCCCCCCEEECCC--CcceecCcccc-------ccC-cCCEEECCC
Confidence            243 44555554432        12235678888888874  43333443332       346 778888773

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.25  E-value=2.2e-11  Score=123.42  Aligned_cols=221  Identities=14%  Similarity=0.085  Sum_probs=151.5

Q ss_pred             CCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEE
Q 039643          125 AKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVI  202 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I  202 (520)
                      ...++.|+|+++.+. .|+....+++|++|+|+++.+.  .++.-+..++.|+.|+|++|.... .-.+.++++|+.|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            478999999998774 4777888999999999999875  333446789999999999986321 123556899999999


Q ss_pred             ecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccccccc
Q 039643          203 VDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSN  280 (520)
Q Consensus       203 ~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~  280 (520)
                      ++|.... .+   ...+....+  ...+.++++|++|+++++.++.  +...++++++|+.|.++++....  +.-..++
T Consensus       158 ~~n~~~~-~~---p~~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~  229 (328)
T 4fcg_A          158 RACPELT-EL---PEPLASTDA--SGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSALGPAIHHLP  229 (328)
T ss_dssp             EEETTCC-CC---CSCSEEEC---CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred             CCCCCcc-cc---ChhHhhccc--hhhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence            9986321 00   011211111  1235678999999999888762  33457899999999999987422  2122457


Q ss_pred             cccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhcccc
Q 039643          281 LLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQ  355 (520)
Q Consensus       281 ~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~  355 (520)
                      +|++|++++|....   ..+..+|+|+.|+++++.........+.. ..|+ +.+.++...+.+       +..+.+++.
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i-------P~~l~~L~~  302 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-------PSLIAQLPA  302 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC-------CGGGGGSCT
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc-------cHHHhhccC
Confidence            89999999876543   45678999999999997654320111211 2244 556676777765       334677888


Q ss_pred             ccceEEE
Q 039643          356 IENLLIN  362 (520)
Q Consensus       356 Le~L~i~  362 (520)
                      |+.+.+.
T Consensus       303 L~~l~l~  309 (328)
T 4fcg_A          303 NCIILVP  309 (328)
T ss_dssp             TCEEECC
T ss_pred             ceEEeCC
Confidence            8877766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.24  E-value=3.5e-11  Score=126.56  Aligned_cols=83  Identities=18%  Similarity=0.116  Sum_probs=60.7

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--Ccc--cCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLI--AINLNSLKNLSLQRVYANEQMVHNLIAECC  173 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~--~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP  173 (520)
                      .++++|++....    .....|..+..+++|++|+|++|.+..  |..  +..+++|++|+|+++.+.+.....++.+++
T Consensus        79 ~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           79 SSLIILKLDYNQ----FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTCCEEECTTCT----TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccCCEEeCCCCc----cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            678889886641    122346777888999999999987753  333  778999999999998874322223467889


Q ss_pred             CcceeeeeccC
Q 039643          174 SLEDLSLRYTL  184 (520)
Q Consensus       174 ~LE~L~L~~c~  184 (520)
                      .|+.|++.++.
T Consensus       155 ~L~~L~L~~n~  165 (455)
T 3v47_A          155 RFHVLDLTFNK  165 (455)
T ss_dssp             TCCEEECTTCC
T ss_pred             cccEEeCCCCc
Confidence            99999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.23  E-value=1e-11  Score=130.74  Aligned_cols=270  Identities=14%  Similarity=0.162  Sum_probs=168.9

Q ss_pred             HHH-HHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--C-cccCCCC----CCCEEEecceecCh
Q 039643           91 WIG-LAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--P-LIAINLN----SLKNLSLQRVYANE  162 (520)
Q Consensus        91 Wl~-~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p-~~~~~l~----sLk~L~L~~v~~~~  162 (520)
                      |.. ...-+++++|++....-.......+|..+..+++|++|+|+++.+..  + .....++    +|++|+|+++.+++
T Consensus        20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~   99 (461)
T 1z7x_W           20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   99 (461)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence            544 33457899999987521111123567788888999999999986632  1 1223444    79999999998854


Q ss_pred             ---HHHHHHHhcCCCcceeeeeccCCc----ceec---cccccccceEEEecccCCCCc------eeeeCCceeEEEecc
Q 039643          163 ---QMVHNLIAECCSLEDLSLRYTLGL----KFFS---VSKAHKLKNMVIVDYSRSSEL------ESIVAPSLQQLTLVR  226 (520)
Q Consensus       163 ---~~l~~Lls~CP~LE~L~L~~c~~l----~~l~---I~~~~~Lk~L~I~~~~~~~~~------~~i~aP~L~~L~l~~  226 (520)
                         ..+...+..|+.|++|++++|..-    ..+.   ....++|++|++++|......      ..-..|+|++|.+..
T Consensus       100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence               356677889999999999988621    1110   111457999999988642211      112358999998863


Q ss_pred             c-------ccc-----CCCCCcceEEecccccchhH---HHHHHhCCcccceeecccccccc----cc----cccccccc
Q 039643          227 V-------IVV-----ATCPNLKKLHLSEIVLEDQE---FHELISKFPLLEDLSVSSSQPLE----RV----KFSSNLLK  283 (520)
Q Consensus       227 ~-------~~~-----~~l~~L~~L~L~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~~l~----~~----~~~f~~L~  283 (520)
                      .       ..+     ...++|++|+++++.+++..   +...+..+++|+.|.++++..-.    ..    ....++|+
T Consensus       180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~  259 (461)
T 1z7x_W          180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR  259 (461)
T ss_dssp             SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence            1       111     13568999999888776542   45667788999999998876311    01    01256889


Q ss_pred             EEEeecCCch-------hHHhcCCCCccEeEecccCCCCcc----ccccc--CCCcE-EEEeccccccChhhHHHHHHHH
Q 039643          284 RVAFLFCRSL-------RAVDLDTPNLLSFTFESVRIPTIS----ISASH--QCPWN-VFFVHEHDVGDIDNWYLKLKEF  349 (520)
Q Consensus       284 ~L~L~~c~~l-------~~lL~~~P~L~~L~l~~~~~~~~~----~~~l~--~~~L~-v~~~~~~~~g~~~~l~~~~~~~  349 (520)
                      +|++++|.-.       ...+..+|+|+.|+++++.+....    ...+.  ...++ +.+..+.+.+..   ...+...
T Consensus       260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~  336 (461)
T 1z7x_W          260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC---CSHFSSV  336 (461)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---HHHHHHH
T ss_pred             EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH---HHHHHHH
Confidence            9998876331       144556888999999888654210    00011  11343 445555555442   2233556


Q ss_pred             HhccccccceEEEe
Q 039643          350 LGASNQIENLLINL  363 (520)
Q Consensus       350 l~n~~~Le~L~i~~  363 (520)
                      +.+.+.|+.|.+..
T Consensus       337 l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          337 LAQNRFLLELQISN  350 (461)
T ss_dssp             HHHCSSCCEEECCS
T ss_pred             HhhCCCccEEEccC
Confidence            67778888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.23  E-value=2.4e-10  Score=116.48  Aligned_cols=238  Identities=14%  Similarity=0.082  Sum_probs=164.1

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+|. .+..+++|++|+|++|.+..  |..+.++++|++|+|+++.+.+ .....+.+++.
T Consensus        52 ~~L~~L~l~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~  125 (353)
T 2z80_A           52 EAVKSLDLSNN-----RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSS  125 (353)
T ss_dssp             TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTT
T ss_pred             ccCcEEECCCC-----cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCcc
Confidence            57899998664     2334555 67789999999999987743  4568899999999999998742 22234678999


Q ss_pred             cceeeeeccCC--cce-eccccccccceEEEecccCCC---CceeeeCCceeEEEecc-------ccccCCCCCcceEEe
Q 039643          175 LEDLSLRYTLG--LKF-FSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHL  241 (520)
Q Consensus       175 LE~L~L~~c~~--l~~-l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L  241 (520)
                      |+.|++.++.-  +.. -.+.++++|+.|+++++....   +......++|++|.+..       +..+..+++|++|++
T Consensus       126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            99999999852  222 234568999999999984211   11123468899998862       345788999999999


Q ss_pred             cccccchhHHHHHHhCCcccceeecccccccc--cc----ccccccccEEEeecCCch-------hHHhcCCCCccEeEe
Q 039643          242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV----KFSSNLLKRVAFLFCRSL-------RAVDLDTPNLLSFTF  308 (520)
Q Consensus       242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~----~~~f~~L~~L~L~~c~~l-------~~lL~~~P~L~~L~l  308 (520)
                      +++.++. ....++..+++|+.|+++++..-.  ..    ......++.+.+..+.-.       ...+..+|+|+.|++
T Consensus       206 ~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L  284 (353)
T 2z80_A          206 HMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF  284 (353)
T ss_dssp             ECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence            9888753 344567789999999999887421  11    112345777777764321       145678999999999


Q ss_pred             cccCCCCcccccccC-CCcE-EEEeccccccChhhH
Q 039643          309 ESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNW  342 (520)
Q Consensus       309 ~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l  342 (520)
                      +++.+..+....+.. ..++ +.+..+.+.++.+.+
T Consensus       285 s~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             CCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            999877541111122 2354 567788888875544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.21  E-value=1.8e-10  Score=123.52  Aligned_cols=278  Identities=14%  Similarity=0.065  Sum_probs=156.0

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .++++|++....    .....|..+..+++|++|+|+++.+.. |..  .+++|++|+|+++.+..-.++..+.+++.|+
T Consensus        45 ~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           45 SKLRILIISHNR----IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             TTCCEEECCSSC----CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             ccccEEecCCCc----cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence            578888876541    122236677778888888888886643 333  7888888888888774322333467788888


Q ss_pred             eeeeeccCCcceecccccccc--ceEEEecccC--CC---Cce-------------------------eeeCCceeEEEe
Q 039643          177 DLSLRYTLGLKFFSVSKAHKL--KNMVIVDYSR--SS---ELE-------------------------SIVAPSLQQLTL  224 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~L--k~L~I~~~~~--~~---~~~-------------------------~i~aP~L~~L~l  224 (520)
                      .|++.++.- ....+.++++|  +.|++.++..  ..   ..+                         .-..++|+.+.+
T Consensus       119 ~L~L~~n~l-~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l  197 (520)
T 2z7x_B          119 FLGLSTTHL-EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI  197 (520)
T ss_dssp             EEEEEESSC-CGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred             EEEecCccc-chhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence            888888752 22334456677  8888887753  10   000                         002455555554


Q ss_pred             ccc-------------cccCCCCCcceEEecccccchhHHHHHHh--CCcccceeeccccccccccc--------ccccc
Q 039643          225 VRV-------------IVVATCPNLKKLHLSEIVLEDQEFHELIS--KFPLLEDLSVSSSQPLERVK--------FSSNL  281 (520)
Q Consensus       225 ~~~-------------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~--~l~~L~~L~L~~~~~l~~~~--------~~f~~  281 (520)
                      ...             ..+..+++|+.+++..+.+++..+..+..  ..++|+.|.++++......+        ....+
T Consensus       198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~  277 (520)
T 2z7x_B          198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA  277 (520)
T ss_dssp             EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred             cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence            321             13566777777777766665543333222  24578888887765321111        11223


Q ss_pred             --------------------------ccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccCC-CcE-EEEec
Q 039643          282 --------------------------LKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQC-PWN-VFFVH  332 (520)
Q Consensus       282 --------------------------L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~-~L~-v~~~~  332 (520)
                                                |+.|.+.++.... .....+|+|+.|+++++.+.......+... .++ +.+.+
T Consensus       278 L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             EEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred             eEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence                                      4444444432211 112678889999998887664201112211 243 45566


Q ss_pred             cccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          333 EHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                      +.+.+     ...+...+.+++.|+.|.+.. +...+.++..      ....++ .|++|.+.
T Consensus       358 N~l~~-----l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~------~~~~l~-~L~~L~Ls  407 (520)
T 2z7x_B          358 NQLKE-----LSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKG------DCSWTK-SLLSLNMS  407 (520)
T ss_dssp             SCCCB-----HHHHHHHHTTCTTCCEEECCS-SCCBCCGGGC------SCCCCT-TCCEEECC
T ss_pred             CccCc-----cccchHHHhhCCCCCEEECCC-CcCCcccccc------hhccCc-cCCEEECc
Confidence            66553     112356678899999999984 3333323322      122335 66666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.20  E-value=3e-11  Score=129.12  Aligned_cols=221  Identities=12%  Similarity=0.078  Sum_probs=121.4

Q ss_pred             CccEEEEeccccCC--CcccCCCCCCCEEEecceecC-hHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEe
Q 039643          127 LLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYAN-EQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIV  203 (520)
Q Consensus       127 sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~-~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~  203 (520)
                      +|++|+|++|.+..  |..+..+++|++|+|+++.+. ...    +.+++.|+.|+|++|. +..+.  ..++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECc
Confidence            55555555554422  234455555555555555542 111    4455555555555553 11111  13556666655


Q ss_pred             cccCCCCceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-cc
Q 039643          204 DYSRSSELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RV  275 (520)
Q Consensus       204 ~~~~~~~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~  275 (520)
                      ++.... ......|+|++|.+..       +..+..+++|+.|+++++.+++..+..+..++++|+.|+|+++..-. +.
T Consensus       108 ~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          108 NNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            554311 1111235566665541       23456788888888888877654444455578889999988877422 22


Q ss_pred             ccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHh
Q 039643          276 KFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLG  351 (520)
Q Consensus       276 ~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~  351 (520)
                      ...+++|++|+|+++.-..  .-+..+|+|+.|+++++.+..+ ...+.. ..++ +.+..+.+..      ..+..++.
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c------~~~~~~~~  259 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHC------GTLRDFFS  259 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCH------HHHHHHHT
T ss_pred             cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcC------cchHHHHH
Confidence            2236788888888753321  3356788899999988877654 111221 1233 3444454441      11345666


Q ss_pred             ccccccceEEE
Q 039643          352 ASNQIENLLIN  362 (520)
Q Consensus       352 n~~~Le~L~i~  362 (520)
                      ..+.|+.+.+.
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            67777766654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.20  E-value=2.6e-11  Score=122.02  Aligned_cols=243  Identities=16%  Similarity=0.099  Sum_probs=135.4

Q ss_pred             cHHHHHHHHHh--CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChH
Q 039643           87 LVDKWIGLAVG--NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQ  163 (520)
Q Consensus        87 ~v~~Wl~~a~~--~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~  163 (520)
                      .+...+.....  .++++|++...     ....+ |..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+ 
T Consensus        21 ~l~~~~~~~~~~~~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-   94 (317)
T 3o53_A           21 SLKQALASLRQSAWNVKELDLSGN-----PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-   94 (317)
T ss_dssp             THHHHHHHHHTTGGGCSEEECTTS-----CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-
T ss_pred             chhhhHHHHhccCCCCCEEECcCC-----ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-
Confidence            34444443322  35666666543     11122 23455566677777776655321125666677777776666532 


Q ss_pred             HHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecc
Q 039643          164 MVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSE  243 (520)
Q Consensus       164 ~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~  243 (520)
                           +..++.|+.|++.++.- ..+....+++|+.|+++++....  +             .+..+..+++|++|++++
T Consensus        95 -----l~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~N~l~~--~-------------~~~~~~~l~~L~~L~Ls~  153 (317)
T 3o53_A           95 -----LLVGPSIETLHAANNNI-SRVSCSRGQGKKNIYLANNKITM--L-------------RDLDEGCRSRVQYLDLKL  153 (317)
T ss_dssp             -----EEECTTCCEEECCSSCC-SEEEECCCSSCEEEECCSSCCCS--G-------------GGBCTGGGSSEEEEECTT
T ss_pred             -----ccCCCCcCEEECCCCcc-CCcCccccCCCCEEECCCCCCCC--c-------------cchhhhccCCCCEEECCC
Confidence                 22346666666666542 11112224566666666554210  0             122356677888888887


Q ss_pred             cccchhHHHHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCCCccccc
Q 039643          244 IVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIPTISISA  320 (520)
Q Consensus       244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~~~~~~~  320 (520)
                      +.+++..+..+...+++|+.|.++++..-. +....+++|++|+++++.-..  ..+..+|+|+.|+++++.+..+ ...
T Consensus       154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~  232 (317)
T 3o53_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKA  232 (317)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTT
T ss_pred             CCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-hhH
Confidence            776653333455677888888888876421 222236678888887753321  3356778888888888876643 111


Q ss_pred             ccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          321 SHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       321 l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                      +.. ..++ +.+..+.+..      .....++.+.+.|+.+.+..
T Consensus       233 ~~~l~~L~~L~l~~N~~~~------~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          233 LRFSQNLEHFDLRGNGFHC------GTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CCCCTTCCEEECTTCCCBH------HHHHHHHHTCHHHHHHHHHH
T ss_pred             hhcCCCCCEEEccCCCccC------cCHHHHHhccccceEEECCC
Confidence            211 1243 4455555541      12366777888888887763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.18  E-value=4.1e-11  Score=126.57  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=37.8

Q ss_pred             cCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCc
Q 039643          230 VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNL  303 (520)
Q Consensus       230 ~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L  303 (520)
                      +.++++|++|+++++.+++-   .-+..+++|+.|+|+++....  +. -..+++|++|.+.++....   ..+..+|+|
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCCCCEEECCCCccccc---ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            34555555555555544321   123455555555555554311  11 1123455555555432211   233455566


Q ss_pred             cEeEecccCCC
Q 039643          304 LSFTFESVRIP  314 (520)
Q Consensus       304 ~~L~l~~~~~~  314 (520)
                      +.|+++++.+.
T Consensus       269 ~~L~L~~N~l~  279 (452)
T 3zyi_A          269 VELNLAHNNLS  279 (452)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECCCCcCC
Confidence            66666655544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.18  E-value=6.9e-11  Score=130.48  Aligned_cols=270  Identities=10%  Similarity=0.048  Sum_probs=158.2

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccc-cC---CCcccCCC------CCCCEEEecceecChHHHHH
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCR-LD---EPLIAINL------NSLKNLSLQRVYANEQMVHN  167 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~-l~---~p~~~~~l------~sLk~L~L~~v~~~~~~l~~  167 (520)
                      .++++|++...    .....+|..+..+++|++|+|++|. +.   .|.....+      ++|++|+|.++.+.  .++.
T Consensus       249 ~~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~  322 (636)
T 4eco_A          249 KDLTDVEVYNC----PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPV  322 (636)
T ss_dssp             TTCCEEEEECC----TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCC
T ss_pred             CCCCEEEecCC----cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCc
Confidence            67889999774    1234678888888888888888876 53   34444444      78888888887764  3333


Q ss_pred             --HHhcCCCcceeeeeccCCccee-ccc-----------------------cccc-cceEEEecccCCC-Cceee--eCC
Q 039643          168 --LIAECCSLEDLSLRYTLGLKFF-SVS-----------------------KAHK-LKNMVIVDYSRSS-ELESI--VAP  217 (520)
Q Consensus       168 --Lls~CP~LE~L~L~~c~~l~~l-~I~-----------------------~~~~-Lk~L~I~~~~~~~-~~~~i--~aP  217 (520)
                        .+..++.|+.|++.+|.....+ .+.                       ++++ |+.|+++++.... +....  ..+
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~  402 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS  402 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred             hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence              5667788888887776421011 222                       2344 5555555554310 11001  123


Q ss_pred             ceeEEEecc-------ccccC-------CCCCcceEEecccccchhHHHHHHhCCcccceeecccccccccccc-cc---
Q 039643          218 SLQQLTLVR-------VIVVA-------TCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKF-SS---  279 (520)
Q Consensus       218 ~L~~L~l~~-------~~~~~-------~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~-~f---  279 (520)
                      +|++|.+..       +..+.       .+++|+.|+++++.++. ....++..+++|+.|.++++... .++. .+   
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            677777642       12233       55678888888777653 34456677888888888887642 1111 11   


Q ss_pred             -------ccccEEEeecCCchh--HHhc--CCCCccEeEecccCCCCcccccccC-CCcE-EEEe------ccccccChh
Q 039643          280 -------NLLKRVAFLFCRSLR--AVDL--DTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFV------HEHDVGDID  340 (520)
Q Consensus       280 -------~~L~~L~L~~c~~l~--~lL~--~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~------~~~~~g~~~  340 (520)
                             .+|++|+|+++.-..  ..+.  .+|+|+.|+++++.+..+ ...+.. ..|+ +.+.      .+.+.+.+ 
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~-  558 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREW-  558 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCC-
T ss_pred             cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccC-
Confidence                   278888888753322  3333  788899999988876644 111111 1243 3342      23334432 


Q ss_pred             hHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          341 NWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       341 ~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                            ...+.+++.|+.|.+..  +..+.++..+       .  + .|++|.+.
T Consensus       559 ------p~~l~~l~~L~~L~Ls~--N~l~~ip~~~-------~--~-~L~~L~Ls  595 (636)
T 4eco_A          559 ------PEGITLCPSLTQLQIGS--NDIRKVNEKI-------T--P-NISVLDIK  595 (636)
T ss_dssp             ------CTTGGGCSSCCEEECCS--SCCCBCCSCC-------C--T-TCCEEECC
T ss_pred             ------hHHHhcCCCCCEEECCC--CcCCccCHhH-------h--C-cCCEEECc
Confidence                  33456788888888874  4334444332       1  5 77888877

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.17  E-value=1.2e-10  Score=127.55  Aligned_cols=206  Identities=16%  Similarity=0.091  Sum_probs=111.8

Q ss_pred             CCceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .+++.+++...     ....+|+.++ .+++|++|+|++|.+..  |..+..+++|++|+|+++.+.. .....+++++.
T Consensus        51 ~~l~~l~l~~~-----~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  124 (597)
T 3oja_B           51 NNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL  124 (597)
T ss_dssp             CCCSEEEESSC-----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCceEEEeeCC-----CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCC
Confidence            45555655432     2334555433 46677777777765532  3356667777777777666522 11123456677


Q ss_pred             cceeeeeccCCcc--eeccccccccceEEEecccCCC--CceeeeCCceeEEEecc----ccccCCCCCcceEEeccccc
Q 039643          175 LEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVL  246 (520)
Q Consensus       175 LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~  246 (520)
                      |+.|+|.+|.-..  .-.+.++++|+.|+++++....  +......++|++|.+.+    ...+..+++|+.++++++.+
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence            7777777664211  1112346677777777665321  11122456677776652    22345566777777766555


Q ss_pred             chhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCC
Q 039643          247 EDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       247 ~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      +.      +...++|+.|.++++..-.-.+..+.+|+.|.|+++.... ..+..+|+|+.|+++++.+..
T Consensus       205 ~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          205 ST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             SE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred             cc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC
Confidence            43      2344567777776665321112233567777776643222 445666777777777766543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.17  E-value=6e-11  Score=134.99  Aligned_cols=271  Identities=10%  Similarity=0.019  Sum_probs=149.6

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccc-cC---CCc-------ccCCCCCCCEEEecceecChHHH
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCR-LD---EPL-------IAINLNSLKNLSLQRVYANEQMV  165 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~-l~---~p~-------~~~~l~sLk~L~L~~v~~~~~~l  165 (520)
                      -.+++.|+|....    ....+|..+..+++|++|+|++|. +.   .|.       .+..+++|+.|+|+++.+.  .+
T Consensus       490 L~~L~~L~Ls~N~----l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~i  563 (876)
T 4ecn_A          490 LKDLTDVELYNCP----NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EF  563 (876)
T ss_dssp             CTTCCEEEEESCT----TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BC
T ss_pred             CCCCCEEECcCCC----CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--cc
Confidence            3578888887641    234567777777777777777765 42   232       2234457777777776664  23


Q ss_pred             HH--HHhcCCCcceeeeeccCCccee-ccccccc------------------------cceEEEecccCCC-Ccee--ee
Q 039643          166 HN--LIAECCSLEDLSLRYTLGLKFF-SVSKAHK------------------------LKNMVIVDYSRSS-ELES--IV  215 (520)
Q Consensus       166 ~~--Lls~CP~LE~L~L~~c~~l~~l-~I~~~~~------------------------Lk~L~I~~~~~~~-~~~~--i~  215 (520)
                      +.  .+.+++.|+.|+|++|... .+ .+.++++                        |+.|+++++.... +...  ..
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~  642 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS  642 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC
T ss_pred             CChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccc
Confidence            33  4556666666666665321 11 2223344                        5555555544210 0000  11


Q ss_pred             CCceeEEEeccc------c----ccC--CCCCcceEEecccccchhHHHHHHhCCcccceeecccccccccccc------
Q 039643          216 APSLQQLTLVRV------I----VVA--TCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKF------  277 (520)
Q Consensus       216 aP~L~~L~l~~~------~----~~~--~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~------  277 (520)
                      .++|+.|.+...      .    .+.  .+++|+.|+++++.++. ....++..+++|+.|.|+++..- .++.      
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~  720 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPK  720 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence            133666665410      0    111  23477888887777653 34456678888888888887632 1111      


Q ss_pred             -----ccccccEEEeecCCchh--HHhc--CCCCccEeEecccCCCCcccccccC-CCcE-EEEec------cccccChh
Q 039643          278 -----SSNLLKRVAFLFCRSLR--AVDL--DTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVH------EHDVGDID  340 (520)
Q Consensus       278 -----~f~~L~~L~L~~c~~l~--~lL~--~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~------~~~~g~~~  340 (520)
                           .+++|+.|+|++|.-..  ..+.  .+|+|+.|+++++.+..+ ...+.. ..|+ +.+..      +.+.+.+ 
T Consensus       721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-  798 (876)
T 4ecn_A          721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQW-  798 (876)
T ss_dssp             TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCC-
T ss_pred             cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccC-
Confidence                 11278888888753322  3333  788999999988876654 111111 1243 33433      3344443 


Q ss_pred             hHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643          341 NWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       341 ~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                            ...+.+++.|+.|.+..  +..+.++..+       .  + .|+.|.+..
T Consensus       799 ------p~~l~~L~~L~~L~Ls~--N~L~~Ip~~l-------~--~-~L~~LdLs~  836 (876)
T 4ecn_A          799 ------PTGITTCPSLIQLQIGS--NDIRKVDEKL-------T--P-QLYILDIAD  836 (876)
T ss_dssp             ------CTTGGGCSSCCEEECCS--SCCCBCCSCC-------C--S-SSCEEECCS
T ss_pred             ------hHHHhcCCCCCEEECCC--CCCCccCHhh-------c--C-CCCEEECCC
Confidence                  33456788888888874  4334444432       1  4 777888773

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.17  E-value=6.8e-11  Score=129.12  Aligned_cols=208  Identities=14%  Similarity=0.056  Sum_probs=111.6

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      ..++++|++...     ....+| .+..+++|++|++++|.+...+.. .+++|++|++.++......   -+..+|.|+
T Consensus       284 l~~L~~L~l~~~-----~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~  353 (606)
T 3vq2_A          284 LANVSAMSLAGV-----SIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLS  353 (606)
T ss_dssp             GTTCSEEEEESC-----CCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCC
T ss_pred             CCCCCEEEecCc-----cchhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCC
Confidence            367888888664     123455 566677788888887766332233 7777777777766431111   234567777


Q ss_pred             eeeeeccCC--cc--eeccccccccceEEEecccCCC-CceeeeCCceeEEEecc-------c-cccCCCCCcceEEecc
Q 039643          177 DLSLRYTLG--LK--FFSVSKAHKLKNMVIVDYSRSS-ELESIVAPSLQQLTLVR-------V-IVVATCPNLKKLHLSE  243 (520)
Q Consensus       177 ~L~L~~c~~--l~--~l~I~~~~~Lk~L~I~~~~~~~-~~~~i~aP~L~~L~l~~-------~-~~~~~l~~L~~L~L~~  243 (520)
                      .|++.+|..  ..  ...+.++++|+.|+++++.... +......++|+.|.+..       + ..+..+++|++|++++
T Consensus       354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             EEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence            777776641  11  1123345667777776664210 11122346666666641       1 2345566666666666


Q ss_pred             cccchhHHHHHHhCCcccceeecccccccc---ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCC
Q 039643          244 IVLEDQEFHELISKFPLLEDLSVSSSQPLE---RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~---~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      +.+++. ....++++++|+.|.++++....   +.. ..+++|+.|++++|....   ..+..+++|+.|+++++.+..
T Consensus       434 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  511 (606)
T 3vq2_A          434 TNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF  511 (606)
T ss_dssp             SCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence            554431 22335566666666666654321   111 123566666666543221   334556666666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.17  E-value=1.1e-10  Score=116.99  Aligned_cols=188  Identities=17%  Similarity=0.131  Sum_probs=112.3

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|++...     ....+| .+..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-  . -+..++.|+.
T Consensus        41 ~~L~~L~l~~~-----~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~  111 (308)
T 1h6u_A           41 DGITTLSAFGT-----GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKT  111 (308)
T ss_dssp             HTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCE
T ss_pred             CCcCEEEeeCC-----CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCE
Confidence            45666666442     122344 4556677777777777664322267777777777777766321  1 2556777777


Q ss_pred             eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhC
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK  257 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~  257 (520)
                      |++.+|.--....+.++++|+.|+++++....                 ...+..+++|+.|+++++.+++-.  . +.+
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~--~-l~~  171 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-----------------ISPLAGLTNLQYLSIGNAQVSDLT--P-LAN  171 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-----------------CGGGGGCTTCCEEECCSSCCCCCG--G-GTT
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCc-----------------CccccCCCCccEEEccCCcCCCCh--h-hcC
Confidence            77777642111124456777777777665310                 112456777788888777665421  1 677


Q ss_pred             Ccccceeecccccccc-ccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCC
Q 039643          258 FPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       258 l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~  314 (520)
                      +++|+.|.++++..-. +.-..+++|++|+++++.-.. ..+..+|+|+.|+++++.+.
T Consensus       172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             CCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence            7888888887765321 111235678888887653321 23677888888888887654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.16  E-value=1.8e-10  Score=125.23  Aligned_cols=252  Identities=13%  Similarity=0.121  Sum_probs=114.1

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-----CCcccCCCCCCCEEEecceecChHHHHHHHhcC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-----EPLIAINLNSLKNLSLQRVYANEQMVHNLIAEC  172 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-----~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C  172 (520)
                      .++++|++...     ....+|..+..+++|++|.++++...     .+.....+++|+.|.+.++.  ...++.++..|
T Consensus       220 ~~L~~L~L~~~-----~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~  292 (592)
T 3ogk_B          220 RSLVSVKVGDF-----EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFA  292 (592)
T ss_dssp             TTCCEEECSSC-----BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGG
T ss_pred             CCCcEEeccCc-----cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhc
Confidence            67888877553     12235555556666666666542111     01223344445554444421  22233334444


Q ss_pred             CCcceeeeeccCCcce--e--ccccccccceEEEecccCCC--CceeeeCCceeEEEecc----------ccc-------
Q 039643          173 CSLEDLSLRYTLGLKF--F--SVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR----------VIV-------  229 (520)
Q Consensus       173 P~LE~L~L~~c~~l~~--l--~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~----------~~~-------  229 (520)
                      ++|++|+|.+|. +..  +  .+.++++|++|++..+....  ..+.-.+|+|++|.+..          ...       
T Consensus       293 ~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          293 AQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             GGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             CCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            555555554443 110  0  01234445554444221000  00111234444444441          100       


Q ss_pred             --cCCCCCcceEEecccccchhHHHHHHhCCcccceeeccc---ccccccc---------ccccccccEEEeecCCc-h-
Q 039643          230 --VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSS---SQPLERV---------KFSSNLLKRVAFLFCRS-L-  293 (520)
Q Consensus       230 --~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~---~~~l~~~---------~~~f~~L~~L~L~~c~~-l-  293 (520)
                        ...+++|++|++..+.+++..+..+..++++|+.|.+++   +..+...         ...+++|++|+++.|.+ + 
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~  451 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT  451 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence              123566666666555555544544445566666666653   2222110         11245566666654432 1 


Q ss_pred             ----hHHhcCCCCccEeEecccCCCCcc-cccccCC-CcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          294 ----RAVDLDTPNLLSFTFESVRIPTIS-ISASHQC-PWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       294 ----~~lL~~~P~L~~L~l~~~~~~~~~-~~~l~~~-~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                          ..+...+|+|+.|++..+++.... ...+..+ .|+ +.+..+.+.+      ..+..+.++++.|+.|.+..
T Consensus       452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE------RAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH------HHHHHHHHHCSSCCEEEEES
T ss_pred             HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH------HHHHHHHHhcCccCeeECcC
Confidence                133344666666666655543210 0111111 133 3444444332      22356667888899988884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.16  E-value=7.2e-10  Score=119.39  Aligned_cols=209  Identities=15%  Similarity=0.107  Sum_probs=144.9

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      ..+++|++....    .....|..+..+++|++|+|++|.+..  |..+.++++|++|+|+++.+.+ .....+++++.|
T Consensus        26 ~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNK----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSC----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTC
T ss_pred             CCccEEECcCCc----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCC
Confidence            579999987641    122335678889999999999997743  4568899999999999998843 223346889999


Q ss_pred             ceeeeeccCCc--c-eeccccccccceEEEecccCCC--C-ceeeeCCceeEEEecc-------ccccCCCCCcceEEec
Q 039643          176 EDLSLRYTLGL--K-FFSVSKAHKLKNMVIVDYSRSS--E-LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLS  242 (520)
Q Consensus       176 E~L~L~~c~~l--~-~l~I~~~~~Lk~L~I~~~~~~~--~-~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~  242 (520)
                      ++|++++|.-.  . .-.+.++++|+.|+++++....  + ......++|++|.+..       +..+..+++|++|+++
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            99999998632  1 1235568999999999986311  1 1123468899999852       3456788999999998


Q ss_pred             ccccchhHHHHHHhCCcccceeecccccccc----c--cccccccccEEEeecCCchh-------HHhcCCCCccEeEec
Q 039643          243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLE----R--VKFSSNLLKRVAFLFCRSLR-------AVDLDTPNLLSFTFE  309 (520)
Q Consensus       243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~----~--~~~~f~~L~~L~L~~c~~l~-------~lL~~~P~L~~L~l~  309 (520)
                      .+..+. ....++..+++|+.|.++++....    +  ......+|++|++.++....       ..+...++|+.+++.
T Consensus       181 ~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~  259 (549)
T 2z81_A          181 LSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD  259 (549)
T ss_dssp             CSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred             cCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence            876643 344456789999999999876421    1  11234678888887643211       333556667777766


Q ss_pred             ccC
Q 039643          310 SVR  312 (520)
Q Consensus       310 ~~~  312 (520)
                      ++.
T Consensus       260 ~~~  262 (549)
T 2z81_A          260 DCT  262 (549)
T ss_dssp             SCE
T ss_pred             ccc
Confidence            654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.15  E-value=6.7e-11  Score=127.86  Aligned_cols=191  Identities=13%  Similarity=0.060  Sum_probs=96.4

Q ss_pred             cCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccc
Q 039643          118 LPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHK  196 (520)
Q Consensus       118 LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~  196 (520)
                      +|..+..+++|++|+++++.+ ..|.....+ +|++|++.++.+..  ++.  ..++.|+.|++.++..........+++
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCC
Confidence            344555566777777777654 335555555 77777776666531  111  356667777776665333222234666


Q ss_pred             cceEEEecccCCCC----ceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643          197 LKNMVIVDYSRSSE----LESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV  266 (520)
Q Consensus       197 Lk~L~I~~~~~~~~----~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L  266 (520)
                      |+.|+++++.....    ......++|++|.+..      +..+..+++|++|+++++.+++......+.++++|+.|++
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            77777666652100    0111345666666541      1124556666666666554433211123455666666666


Q ss_pred             ccccccccc---ccccccccEEEeecCCch----hHHhcCCCCccEeEecccCC
Q 039643          267 SSSQPLERV---KFSSNLLKRVAFLFCRSL----RAVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       267 ~~~~~l~~~---~~~f~~L~~L~L~~c~~l----~~lL~~~P~L~~L~l~~~~~  313 (520)
                      ++|......   -..+++|++|++.+|...    ...+..+|+|+.|+++++.+
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l  482 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  482 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence            665432111   112345666666554321    13344556666666655543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.15  E-value=6.1e-11  Score=124.75  Aligned_cols=194  Identities=16%  Similarity=0.084  Sum_probs=101.4

Q ss_pred             ccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccc
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVS  192 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~  192 (520)
                      .+|..+.  ++++.|+|+++.+..  +..+.++++|++|+|+++.+..- ....+.+++.|+.|+|.++.-  +..-.+.
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  133 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFV  133 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred             cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence            4454443  456666666655432  34455666666666666654210 011234566666666666531  1111233


Q ss_pred             cccccceEEEecccCCC--CceeeeCCceeEEEecc--------ccccCCCCCcceEEecccccchhHHHHHHhCCcccc
Q 039643          193 KAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR--------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE  262 (520)
Q Consensus       193 ~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~--------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~  262 (520)
                      ++++|+.|+++++....  ....-..++|++|.+..        ...+.++++|++|+++++.++.-   .-+..+++|+
T Consensus       134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~  210 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLD  210 (440)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCTTCSSCC
T ss_pred             ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cccCCCcccC
Confidence            45666666666654310  00112345666666542        12355677777777776665431   1255667777


Q ss_pred             eeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCc
Q 039643          263 DLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTI  316 (520)
Q Consensus       263 ~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~  316 (520)
                      .|+|+++....  +. -..+.+|++|.|.++....   ..+..+|+|+.|+++++.+..+
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            77777765321  11 1134567777776643211   3445677777777777766543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.14  E-value=2.1e-10  Score=127.09  Aligned_cols=146  Identities=15%  Similarity=0.025  Sum_probs=75.9

Q ss_pred             hcCCCcceeeeeccCC--cceeccccccccceEEEecccCCCCce------eeeCCceeEEEecc-------ccccCCCC
Q 039643          170 AECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELE------SIVAPSLQQLTLVR-------VIVVATCP  234 (520)
Q Consensus       170 s~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~------~i~aP~L~~L~l~~-------~~~~~~l~  234 (520)
                      ..|+.|+.|++.++.-  ...-.+.++++|+.|+++++......+      ....++|+.|.+..       +..+..++
T Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence            3455555555555431  111123345666666666554211000      11124666666641       23456677


Q ss_pred             CcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCch-----hHHhcCCCCccEe
Q 039643          235 NLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSL-----RAVDLDTPNLLSF  306 (520)
Q Consensus       235 ~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l-----~~lL~~~P~L~~L  306 (520)
                      +|+.|+++.+.+++......+.++++|+.|.++++....  +. ...+++|++|.+.++...     ...+..+++|+.|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            788888877665432222446677777887777765321  11 112456777776654321     1334566777777


Q ss_pred             EecccCCCC
Q 039643          307 TFESVRIPT  315 (520)
Q Consensus       307 ~l~~~~~~~  315 (520)
                      +++++.+..
T Consensus       486 ~Ls~N~l~~  494 (680)
T 1ziw_A          486 DLSNNNIAN  494 (680)
T ss_dssp             ECCSSCCCC
T ss_pred             ECCCCCCCc
Confidence            777665553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.13  E-value=1.2e-10  Score=114.87  Aligned_cols=185  Identities=13%  Similarity=0.010  Sum_probs=101.1

Q ss_pred             CCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee---ccccccccceE
Q 039643          126 KLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF---SVSKAHKLKNM  200 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l---~I~~~~~Lk~L  200 (520)
                      ++|++|+|+++.+..  +..+..+++|++|+|+++.+.+- ....+.+++.|+.|++.++..+..+   .+.++++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            466777777765532  23456677777777776655311 1122455677777777766422221   23346677777


Q ss_pred             EEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643          201 VIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       201 ~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      ++.++....  +...-..++|++|.+..       ...+..+++|++|+++++.++. .....+.++++|+.|.++++..
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcc
Confidence            777665321  01111245555555531       1124567777777777766543 1223456677777777777653


Q ss_pred             cc--ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccC
Q 039643          272 LE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVR  312 (520)
Q Consensus       272 l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~  312 (520)
                      ..  +.. ..+++|++|+++++.-..   ..+..+|+|+.|++.++.
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            21  111 124567777776643211   445667777777776664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.13  E-value=2.8e-10  Score=122.58  Aligned_cols=257  Identities=16%  Similarity=0.106  Sum_probs=142.4

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      .++++|++....    .....|..+..+++|++|+|++|.+.. ++ .+.++++|++|+|+++.+..-.....+.+++.|
T Consensus        50 ~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           50 ANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CcccEEECCCCC----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            567777775531    112234566677888888888876633 33 367788888888888776322222245677888


Q ss_pred             ceeeeeccCCccee---ccccccccceEEEecccCCC--Cceee------------------------eCCceeEEEecc
Q 039643          176 EDLSLRYTLGLKFF---SVSKAHKLKNMVIVDYSRSS--ELESI------------------------VAPSLQQLTLVR  226 (520)
Q Consensus       176 E~L~L~~c~~l~~l---~I~~~~~Lk~L~I~~~~~~~--~~~~i------------------------~aP~L~~L~l~~  226 (520)
                      +.|++.+|.....+   .+.++++|+.|+++++....  +...-                        ..++|++|.+..
T Consensus       126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  205 (549)
T 2z81_A          126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD  205 (549)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred             cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence            88888877533322   34456777777777765320  00011                        135555555531


Q ss_pred             c---------cc-cCCCCCcceEEecccccchhHH---HHHHhCCcccceeecccccccc--cc-------ccc------
Q 039643          227 V---------IV-VATCPNLKKLHLSEIVLEDQEF---HELISKFPLLEDLSVSSSQPLE--RV-------KFS------  278 (520)
Q Consensus       227 ~---------~~-~~~l~~L~~L~L~~~~~~~~~~---~~ll~~l~~L~~L~L~~~~~l~--~~-------~~~------  278 (520)
                      .         .. ...+++|+.+++.++.+++..+   ...+..+++++.|.+.+|....  ..       ...      
T Consensus       206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~  285 (549)
T 2z81_A          206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET  285 (549)
T ss_dssp             CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred             CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence            0         01 1235667777776665554332   2345667777888777664210  00       001      


Q ss_pred             -----------------------cccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcc---cccccC-CCcE-
Q 039643          279 -----------------------SNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTIS---ISASHQ-CPWN-  327 (520)
Q Consensus       279 -----------------------f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~---~~~l~~-~~L~-  327 (520)
                                             ..+|++|++.++.-..   .+...+++|+.|+++++.+....   ...+.. ..++ 
T Consensus       286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~  365 (549)
T 2z81_A          286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT  365 (549)
T ss_dssp             EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred             ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence                                   1346666665533211   33356888888888888765320   011111 1243 


Q ss_pred             EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          328 VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       328 v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                      +.+.++.+.+-     ......+.+++.|+.|.+..
T Consensus       366 L~Ls~N~l~~~-----~~~~~~~~~l~~L~~L~Ls~  396 (549)
T 2z81_A          366 LVLSQNHLRSM-----QKTGEILLTLKNLTSLDISR  396 (549)
T ss_dssp             EECTTSCCCCH-----HHHHHHGGGCTTCCEEECTT
T ss_pred             EEccCCccccc-----ccchhhhhcCCCCCEEECCC
Confidence            44556655531     11134578888999888874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.13  E-value=3e-10  Score=120.46  Aligned_cols=201  Identities=13%  Similarity=0.031  Sum_probs=121.6

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|++....     ...+| .+..+++|++|+|++|.+...+ +..+++|++|+|+++.+.+-.    +.+++.|+.
T Consensus        42 ~~L~~L~Ls~n~-----l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSS-----ITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSC-----CCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCE
T ss_pred             CCCCEEEccCCC-----cccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCE
Confidence            567777775531     12344 5667788888888887664422 667788888888877773321    567788888


Q ss_pred             eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHH
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFH  252 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~  252 (520)
                      |++.++. +..+.+..+++|+.|+++++.... ......++|+.|.+..     ...+..+++|++|+++.+.+++-  .
T Consensus       111 L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~  186 (457)
T 3bz5_A          111 LNCDTNK-LTKLDVSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--D  186 (457)
T ss_dssp             EECCSSC-CSCCCCTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--C
T ss_pred             EECCCCc-CCeecCCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--c
Confidence            8887774 222345567778888877776321 1122456777777642     22456677777777777666542  1


Q ss_pred             HHHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643          253 ELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       253 ~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~  315 (520)
                        ++.+++|+.|.++++..-...-..+++|++|+++++.-....+..+|+|+.|+++++.+..
T Consensus       187 --l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC
T ss_pred             --cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCC
Confidence              5667777777777665311111134567777776643222124566777777777665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.11  E-value=2.4e-10  Score=130.27  Aligned_cols=123  Identities=14%  Similarity=-0.027  Sum_probs=68.5

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEecccc--CC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRL--DE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l--~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|+|....    .....|..+..+++|++|+|++|..  .. |..+.++++|++|+|+++.+.. ..+..+.+++.
T Consensus        24 ~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~   98 (844)
T 3j0a_A           24 NTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFH   98 (844)
T ss_dssp             TTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSS
T ss_pred             CCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCcc
Confidence            567888887641    1222355666677777777777632  22 4456677777777777766521 11223456677


Q ss_pred             cceeeeeccCCcc----eeccccccccceEEEecccCCCC---ceeeeCCceeEEEec
Q 039643          175 LEDLSLRYTLGLK----FFSVSKAHKLKNMVIVDYSRSSE---LESIVAPSLQQLTLV  225 (520)
Q Consensus       175 LE~L~L~~c~~l~----~l~I~~~~~Lk~L~I~~~~~~~~---~~~i~aP~L~~L~l~  225 (520)
                      |+.|+|++|....    ...+.++++|+.|+++++.....   ...-..++|++|.+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            7777777764211    11144566777777776653210   112245666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.10  E-value=8.1e-10  Score=125.83  Aligned_cols=98  Identities=16%  Similarity=0.067  Sum_probs=63.8

Q ss_pred             CceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEE
Q 039643          217 PSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVA  286 (520)
Q Consensus       217 P~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~  286 (520)
                      ++|+.|.+..       +..+..+++|+.|+++.+.++.. ....+.++++|+.|.|+++....  +. -..+++|++|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            5777777752       23457788889998888776542 22456788899999988876421  11 12356788888


Q ss_pred             eecCCchh---HHhcCCCCccEeEecccCCCC
Q 039643          287 FLFCRSLR---AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       287 L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      ++++.-..   ..+..+|+|+.|+++++.+..
T Consensus       345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            87643211   335667888888887776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.09  E-value=6.9e-11  Score=118.80  Aligned_cols=209  Identities=13%  Similarity=0.043  Sum_probs=148.9

Q ss_pred             hCCceEEEEEe-cCCCCCcccccCcccccCCCccEEEEeccccC--CCcccCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643           97 GNGVKELHIVV-ESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD--EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECC  173 (520)
Q Consensus        97 ~~~VkeL~L~~-~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~--~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP  173 (520)
                      -..++.|++.. .    .....+|..+..+++|++|+|+++.+.  .|..+..+++|++|+|+++.+.+ .++..+..++
T Consensus        75 l~~L~~L~L~~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~  149 (313)
T 1ogq_A           75 LPYLNFLYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLP  149 (313)
T ss_dssp             CTTCSEEEEEEET----TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCT
T ss_pred             CCCCCeeeCCCCC----cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCC
Confidence            47899999983 3    123467889999999999999999774  47778999999999999998732 2233467899


Q ss_pred             CcceeeeeccCCc--ceecccccc-ccceEEEecccCC-CCceeeeCCceeEEEecc-------ccccCCCCCcceEEec
Q 039643          174 SLEDLSLRYTLGL--KFFSVSKAH-KLKNMVIVDYSRS-SELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLS  242 (520)
Q Consensus       174 ~LE~L~L~~c~~l--~~l~I~~~~-~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~  242 (520)
                      .|+.|++.++...  ....+..++ +|+.|+++++... .....+...+|+.|.+..       +..+..+++|+.|+++
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            9999999998632  122344466 9999999988642 111122222499998852       3456889999999999


Q ss_pred             ccccchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh--HHhcCCCCccEeEecccC
Q 039643          243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVR  312 (520)
Q Consensus       243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~  312 (520)
                      .+.+++...  .+..+++|+.|+++++......+   ..+++|++|+++++.-..  ......|+|+.+++.+++
T Consensus       230 ~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          230 KNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CCceeeecC--cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            988765322  26788999999999987532222   245789999998753321  112567788888887774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.08  E-value=2.1e-09  Score=115.04  Aligned_cols=147  Identities=14%  Similarity=0.083  Sum_probs=90.7

Q ss_pred             CCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc---ccccccccEEEeecCCchh----HHhcCCC
Q 039643          231 ATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV---KFSSNLLKRVAFLFCRSLR----AVDLDTP  301 (520)
Q Consensus       231 ~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~---~~~f~~L~~L~L~~c~~l~----~lL~~~P  301 (520)
                      ..+++|++|+++++.+++. ....++++++|+.|.++++....  ..   -..+++|++|+++++....    ..+...+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChh-hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            5778899999988877653 22456788999999998877422  11   1245789999998754322    2346678


Q ss_pred             CccEeEecccCCCCcccccccCCCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccc
Q 039643          302 NLLSFTFESVRIPTISISASHQCPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKN  380 (520)
Q Consensus       302 ~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~  380 (520)
                      +|+.|+++++.+.......+. ..++ +.+..+.+. .+       ..-+.+++.|+.|.+..  +.-..++..      
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~i-------p~~~~~l~~L~~L~L~~--N~l~~l~~~------  462 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SI-------PKQVVKLEALQELNVAS--NQLKSVPDG------  462 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC-CC-------CGGGGGCTTCCEEECCS--SCCCCCCTT------
T ss_pred             cCCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc-cc-------chhhhcCCCCCEEECCC--CcCCccCHH------
Confidence            999999988876532011121 2343 445555554 22       22234788999998874  432233322      


Q ss_pred             cCCCCcccccceEEEE
Q 039643          381 RSPSLPFQVGNMRLIV  396 (520)
Q Consensus       381 asp~l~~~l~~L~l~~  396 (520)
                      +...++ .|++|.+..
T Consensus       463 ~~~~l~-~L~~L~l~~  477 (520)
T 2z7x_B          463 IFDRLT-SLQKIWLHT  477 (520)
T ss_dssp             TTTTCT-TCCEEECCS
T ss_pred             HhccCC-cccEEECcC
Confidence            234457 888888773

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.08  E-value=3.8e-10  Score=119.12  Aligned_cols=210  Identities=14%  Similarity=0.040  Sum_probs=140.9

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      .+++.|+|....    .....|..+..+++|++|+|++|.+..  +..+.++++|++|+|+++.+.. .....+.+++.|
T Consensus        75 ~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMENN----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTC
T ss_pred             CCccEEECcCCc----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCC
Confidence            578888886641    122235567778899999999886643  4567788999999998887631 111235678899


Q ss_pred             ceeeeeccCCc--ceeccccccccceEEEecccCCC---CceeeeCCceeEEEecc-----ccccCCCCCcceEEecccc
Q 039643          176 EDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIV  245 (520)
Q Consensus       176 E~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~  245 (520)
                      +.|+|+++...  ....+.++++|++|+++++....   ....-..++|++|.+..     ...+..+++|++|+++++.
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence            99999888522  11234457899999998864311   11122467889888862     2346778899999998887


Q ss_pred             cchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643          246 LEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       246 ~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      +++. ....+.++++|+.|.++++....  +. -..+++|+.|+|+++.-..   ..+..+++|+.|++.++..
T Consensus       230 l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          230 FPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             Cccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            7642 23557888999999998876422  11 1235689999998753221   4456788899999888743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.08  E-value=4.3e-10  Score=118.25  Aligned_cols=209  Identities=15%  Similarity=0.047  Sum_probs=149.0

Q ss_pred             CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .+++.|+|...     ....+ |..+..+++|++|+|++|.+..  +..+.++++|++|+|+++.+.. .....+.+++.
T Consensus        64 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  137 (440)
T 3zyj_A           64 TNTRLLNLHEN-----QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSK  137 (440)
T ss_dssp             TTCSEEECCSC-----CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSS
T ss_pred             CCCcEEEccCC-----cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhcccc
Confidence            67888888664     12233 4567788999999999987743  3567899999999999988732 11123577899


Q ss_pred             cceeeeeccCCc--ceeccccccccceEEEecccCCC---CceeeeCCceeEEEecc-----ccccCCCCCcceEEeccc
Q 039643          175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEI  244 (520)
Q Consensus       175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~  244 (520)
                      |+.|+|.++...  ....+.++++|+.|++.++....   ....-..++|++|.+..     ...+..+++|++|+++++
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence            999999998632  12235568999999999865321   11122468999999862     234678899999999998


Q ss_pred             ccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643          245 VLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       245 ~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      .++.. ....+.++++|+.|.++++..-.  +. -..+++|++|+|+++.-..   ..+..+++|+.|++.++..
T Consensus       218 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          218 HLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            87642 23567899999999999987422  11 1235789999998853322   5567889999999988853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.08  E-value=3e-10  Score=122.71  Aligned_cols=232  Identities=16%  Similarity=0.106  Sum_probs=162.3

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .++++|++...     ....+|..+..+ +|++|++++|.+.. |.  ..+++|++|++.++......-   ...+|.|+
T Consensus       282 ~~L~~L~l~~~-----~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~  350 (570)
T 2z63_A          282 TNVSSFSLVSV-----TIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS---EVDLPSLE  350 (570)
T ss_dssp             TTCSEEEEESC-----EECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC---CCBCTTCC
T ss_pred             CcccEEEecCc-----cchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccccccc---cccCCCCC
Confidence            68999999764     233688888888 99999999997754 43  589999999999887622110   16789999


Q ss_pred             eeeeeccCCcc----eeccccccccceEEEecccCCC-CceeeeCCceeEEEecc-------c-cccCCCCCcceEEecc
Q 039643          177 DLSLRYTLGLK----FFSVSKAHKLKNMVIVDYSRSS-ELESIVAPSLQQLTLVR-------V-IVVATCPNLKKLHLSE  243 (520)
Q Consensus       177 ~L~L~~c~~l~----~l~I~~~~~Lk~L~I~~~~~~~-~~~~i~aP~L~~L~l~~-------~-~~~~~l~~L~~L~L~~  243 (520)
                      .|++++|....    ...+.++++|+.|+++++.... +......++|++|.+..       + ..+.++++|++|++++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  430 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  430 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence            99999886321    1234458999999999886321 11133578999999862       1 2467899999999998


Q ss_pred             cccchhHHHHHHhCCcccceeecccccccc-ccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCc
Q 039643          244 IVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTI  316 (520)
Q Consensus       244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~  316 (520)
                      +.+++. ....+.++++|+.|.+++|.... ..+   ..+++|+.|++++|....   ..+..+|+|+.|+++++.+..+
T Consensus       431 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          431 THTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             SCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             Cccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            776542 33567889999999999987431 111   235789999998864422   4567889999999999877654


Q ss_pred             ccccccCC-CcE-EEEeccccccChhh
Q 039643          317 SISASHQC-PWN-VFFVHEHDVGDIDN  341 (520)
Q Consensus       317 ~~~~l~~~-~L~-v~~~~~~~~g~~~~  341 (520)
                      ....+... .++ +.+.++.+.++.+.
T Consensus       510 ~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          510 PDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CHHHhhcccCCcEEEecCCcccCCCcc
Confidence            11112222 244 56777877777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.07  E-value=4.5e-10  Score=114.46  Aligned_cols=252  Identities=13%  Similarity=0.127  Sum_probs=152.4

Q ss_pred             ccccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS  190 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~  190 (520)
                      ...+|..++  ++|++|+|+++.+.. ++ .+.++++|++|+|+++.+.+ .....+.+++.|+.|+++++.-  +..-.
T Consensus        43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  119 (353)
T 2z80_A           43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSW  119 (353)
T ss_dssp             CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred             ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence            445677655  489999999987643 33 67889999999999887642 1122356789999999988752  21112


Q ss_pred             cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccc-cchhHHHHHHhCCcccceeecccc
Q 039643          191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSS  269 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~  269 (520)
                      +.++++|+.|+++++....  +    |        ....+..+++|++|+++++. ++. .....++++++|+.|.++++
T Consensus       120 ~~~l~~L~~L~L~~n~l~~--l----~--------~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNPYKT--L----G--------ETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             HTTCTTCSEEECTTCCCSS--S----C--------SSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEET
T ss_pred             hCCCccCCEEECCCCCCcc--c----C--------chhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCC
Confidence            4457888888888876310  0    0        00135667788888887653 322 22244677888888888877


Q ss_pred             cccc--ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCccccccc---C-CCcE-EEEeccccccC
Q 039643          270 QPLE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASH---Q-CPWN-VFFVHEHDVGD  338 (520)
Q Consensus       270 ~~l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~---~-~~L~-v~~~~~~~~g~  338 (520)
                      ....  +.. ..+++|++|+++++....   .....+++|+.|+++++.+.......+.   . ..++ +.+......+.
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            6421  111 234578888887754321   3445688999999988876643111111   1 1122 33444444432


Q ss_pred             hhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643          339 IDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV  396 (520)
Q Consensus       339 ~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~  396 (520)
                        . ...+...+.+++.|+.|.+..  +....++..+      -..++ .|++|.+..
T Consensus       265 --~-l~~l~~~l~~l~~L~~L~Ls~--N~l~~i~~~~------~~~l~-~L~~L~L~~  310 (353)
T 2z80_A          265 --S-LFQVMKLLNQISGLLELEFSR--NQLKSVPDGI------FDRLT-SLQKIWLHT  310 (353)
T ss_dssp             --H-HHHHHHHHHTCTTCCEEECCS--SCCCCCCTTT------TTTCT-TCCEEECCS
T ss_pred             --c-hhhhHHHHhcccCCCEEECCC--CCCCccCHHH------HhcCC-CCCEEEeeC
Confidence              2 223456678899999999984  4333333322      13457 888888873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.06  E-value=3.8e-11  Score=126.42  Aligned_cols=214  Identities=17%  Similarity=0.104  Sum_probs=134.5

Q ss_pred             CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEEecceecChHHHHHHHhcC
Q 039643           99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYANEQMVHNLIAEC  172 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C  172 (520)
                      .+++|++....   .....+...+..+++|++|+|++|.+..      +..+..+++|++|+|+++.+++..+..+...+
T Consensus         4 ~l~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            4 DIQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEESCC---CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             cceehhhhhcc---cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            46677775531   1122223335567899999999987642      34466789999999999888666677777766


Q ss_pred             C----CcceeeeeccCCcc------eeccccccccceEEEecccCCCCc---e----eeeCCceeEEEeccc--------
Q 039643          173 C----SLEDLSLRYTLGLK------FFSVSKAHKLKNMVIVDYSRSSEL---E----SIVAPSLQQLTLVRV--------  227 (520)
Q Consensus       173 P----~LE~L~L~~c~~l~------~l~I~~~~~Lk~L~I~~~~~~~~~---~----~i~aP~L~~L~l~~~--------  227 (520)
                      +    .|++|++.+|.-..      .-.+.++++|++|+++++......   +    .-..++|++|.+...        
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            6    69999999885221      112445789999999988632110   0    111357888887521        


Q ss_pred             ---cccCCCCCcceEEecccccchhHHHHHHh----CCcccceeeccccccccc----cc---cccccccEEEeecCCch
Q 039643          228 ---IVVATCPNLKKLHLSEIVLEDQEFHELIS----KFPLLEDLSVSSSQPLER----VK---FSSNLLKRVAFLFCRSL  293 (520)
Q Consensus       228 ---~~~~~l~~L~~L~L~~~~~~~~~~~~ll~----~l~~L~~L~L~~~~~l~~----~~---~~f~~L~~L~L~~c~~l  293 (520)
                         ..+..+++|++|+++++.+++..+..+..    ..++|+.|.+++|..-..    ..   ...++|++|+++++.-.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence               12345688888888887776543333332    456888888888763210    11   12467888888775321


Q ss_pred             h--------HHhcCCCCccEeEecccCCCC
Q 039643          294 R--------AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       294 ~--------~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      .        .+...+++|+.|+++++.+..
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            1        222357888888888876553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.05  E-value=7.5e-11  Score=117.59  Aligned_cols=209  Identities=17%  Similarity=0.089  Sum_probs=147.1

Q ss_pred             CCceEEEEEecCCCCCcccccCccc-ccCCCccEEEEeccccCC----CcccCCCCCCCEEEecceecChHHHHHHHhcC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAI-YSAKLLTTLVLNGCRLDE----PLIAINLNSLKNLSLQRVYANEQMVHNLIAEC  172 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l-~~~~sL~~L~L~~c~l~~----p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C  172 (520)
                      .++++|++...     ....+|..+ ..+++|++|+|+++.+..    +....++++|++|+|+++.+..  +..-+.++
T Consensus        28 ~~l~~L~L~~n-----~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETC
T ss_pred             CCCCEEECCCC-----ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCC
Confidence            57889988664     233677654 578999999999986642    3456679999999999987631  11125678


Q ss_pred             CCcceeeeeccCC--cce-eccccccccceEEEecccCC--CCceeeeCCceeEEEecc--------ccccCCCCCcceE
Q 039643          173 CSLEDLSLRYTLG--LKF-FSVSKAHKLKNMVIVDYSRS--SELESIVAPSLQQLTLVR--------VIVVATCPNLKKL  239 (520)
Q Consensus       173 P~LE~L~L~~c~~--l~~-l~I~~~~~Lk~L~I~~~~~~--~~~~~i~aP~L~~L~l~~--------~~~~~~l~~L~~L  239 (520)
                      +.|+.|++.++..  ... -.+.++++|+.|+++++...  .+...-..++|++|.+.+        +..+..+++|++|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            9999999998852  221 13445899999999988642  111122468999999852        2346789999999


Q ss_pred             EecccccchhHHHHHHhCCcccceeecccccccc--ccc-cccccccEEEeecCCchh---HHhcCCC-CccEeEecccC
Q 039643          240 HLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTP-NLLSFTFESVR  312 (520)
Q Consensus       240 ~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P-~L~~L~l~~~~  312 (520)
                      +++++.+++. ....+.++++|+.|.++++....  +.. ..+++|++|+++++....   ..+...| +|+.|+++++.
T Consensus       181 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          181 DLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCCcCCc-CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            9999887652 23457889999999999987422  111 235789999998864322   3445665 89999999886


Q ss_pred             CC
Q 039643          313 IP  314 (520)
Q Consensus       313 ~~  314 (520)
                      +.
T Consensus       260 ~~  261 (306)
T 2z66_A          260 FA  261 (306)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.04  E-value=3.4e-10  Score=120.93  Aligned_cols=201  Identities=20%  Similarity=0.155  Sum_probs=144.6

Q ss_pred             CceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           99 GVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      ++++|+|....     ...+ |..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+      +...|.|+.
T Consensus        35 ~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNP-----LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIET  103 (487)
T ss_dssp             GCCEEECCSSC-----CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCE
T ss_pred             CccEEEeeCCc-----CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCE
Confidence            79999997741     2234 45777899999999999977432238899999999999998743      334599999


Q ss_pred             eeeeccCCcceeccccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccC-CCCCcceEEecccccc
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVA-TCPNLKKLHLSEIVLE  247 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~-~l~~L~~L~L~~~~~~  247 (520)
                      |++.+|.... +....+++|+.|+++++....  +......++|++|.+..       +..+. .+++|+.|+++++.++
T Consensus       104 L~L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          104 LHAANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             EECCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EECcCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            9999986322 222347899999999987532  11223568999999862       22343 6899999999998876


Q ss_pred             hhHHHHHHhCCcccceeecccccccc--ccccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCC
Q 039643          248 DQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       248 ~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~  314 (520)
                      +.   .....+++|+.|.|+++..-.  +.-..+++|+.|+|+++.-..  ..+..+|+|+.|++.++.+.
T Consensus       183 ~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DV---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EE---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cc---cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            53   123358999999999987421  222245789999998854322  44567899999999998765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.04  E-value=4.3e-10  Score=113.05  Aligned_cols=198  Identities=14%  Similarity=0.020  Sum_probs=120.0

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      -.+++.|++...     ....+++ +..+++|++|+|++|.+..   ....++|++|+++++.+.+-.    ...++.|+
T Consensus        57 l~~L~~L~Ls~n-----~l~~~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~  123 (317)
T 3o53_A           57 FTKLELLNLSSN-----VLYETLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKK  123 (317)
T ss_dssp             CTTCCEEECTTS-----CCEEEEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCE
T ss_pred             CCcCCEEECCCC-----cCCcchh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCC
Confidence            368999998664     1223333 7788999999999997743   223499999999999874321    23579999


Q ss_pred             eeeeeccCC--cceeccccccccceEEEecccCCC-Ccee--eeCCceeEEEecc-----ccccCCCCCcceEEeccccc
Q 039643          177 DLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS-ELES--IVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVL  246 (520)
Q Consensus       177 ~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~-~~~~--i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~  246 (520)
                      .|++.++..  +....+.++++|+.|+++++.... ....  -..++|++|.+..     ......+++|++|+++++.+
T Consensus       124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcC
Confidence            999999863  333345568999999999987421 0111  1346777777652     11223466777777776665


Q ss_pred             chhHHHHHHhCCcccceeecccccccc-cc-ccccccccEEEeecCCch----hHHhcCCCCccEeEec
Q 039643          247 EDQEFHELISKFPLLEDLSVSSSQPLE-RV-KFSSNLLKRVAFLFCRSL----RAVDLDTPNLLSFTFE  309 (520)
Q Consensus       247 ~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~-~~~f~~L~~L~L~~c~~l----~~lL~~~P~L~~L~l~  309 (520)
                      ++- . ..+..+++|+.|.++++..-. +. -..+++|+.|+++++.-.    ...+...|+|+.|++.
T Consensus       204 ~~l-~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          204 AFM-G-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CEE-C-GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             Ccc-h-hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            431 1 125566777777776665311 11 112345666666553222    1444555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.04  E-value=1.3e-09  Score=115.62  Aligned_cols=175  Identities=17%  Similarity=0.088  Sum_probs=92.9

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      -.++++|++....     ...+|  +..+++|++|+|++|.+...+ +.++++|++|+|+++.+.+-  +  ++.++.|+
T Consensus        63 l~~L~~L~Ls~n~-----l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~  130 (457)
T 3bz5_A           63 LTGLTKLICTSNN-----ITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLT  130 (457)
T ss_dssp             CTTCSEEECCSSC-----CSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCC
T ss_pred             cCCCCEEEccCCc-----CCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCC
Confidence            3677888776541     12233  556677778877777664322 56777777777777766321  1  56677777


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc----ccccCCCCCcceEEecccccchhHHH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVLEDQEFH  252 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~~~~~~~  252 (520)
                      .|++.++. +..+.+.++++|+.|+++++...........++|++|.+..    ...+..+++|+.|+++.+.+++.   
T Consensus       131 ~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---  206 (457)
T 3bz5_A          131 YLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---  206 (457)
T ss_dssp             EEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---
T ss_pred             EEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---
Confidence            77777664 22234445666666666666321111112345566665541    12244555555555555544432   


Q ss_pred             HHHhCCcccceeeccccccccccc-cccccccEEEeec
Q 039643          253 ELISKFPLLEDLSVSSSQPLERVK-FSSNLLKRVAFLF  289 (520)
Q Consensus       253 ~ll~~l~~L~~L~L~~~~~l~~~~-~~f~~L~~L~L~~  289 (520)
                       -++.+++|+.|.++++..-. ++ ..+++|++|++++
T Consensus       207 -~l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          207 -DLNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSV  242 (457)
T ss_dssp             -CCTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCS
T ss_pred             -ccccCCCCCEEECcCCcccc-cCccccCCCCEEEeeC
Confidence             14455555555555544211 11 1234455555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.03  E-value=8.6e-10  Score=111.19  Aligned_cols=208  Identities=13%  Similarity=0.071  Sum_probs=111.7

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      ..++.|++...     ....+|. .+..+++|++|+|++|.+..  |..+.++++|++|+|+++.+..  ++.  ...+.
T Consensus        52 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~  122 (330)
T 1xku_A           52 PDTALLDLQNN-----KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKT  122 (330)
T ss_dssp             TTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTT
T ss_pred             CCCeEEECCCC-----cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhccc
Confidence            45666666443     1223333 45566777777777765532  4456677777777777665521  000  11366


Q ss_pred             cceeeeeccCCc--ceeccccccccceEEEecccCCC----CceeeeCCceeEEEeccc----cccCCCCCcceEEeccc
Q 039643          175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS----ELESIVAPSLQQLTLVRV----IVVATCPNLKKLHLSEI  244 (520)
Q Consensus       175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~----~~~~i~aP~L~~L~l~~~----~~~~~l~~L~~L~L~~~  244 (520)
                      |+.|++.++...  ..-.+.++++|+.|+++++....    ....-..++|++|.+...    ....-.++|++|+++++
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n  202 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN  202 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCC
Confidence            777777766421  11123346777777777665321    111223566777766421    11112366777777766


Q ss_pred             ccchhHHHHHHhCCcccceeecccccccc--c-cccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCCC
Q 039643          245 VLEDQEFHELISKFPLLEDLSVSSSQPLE--R-VKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       245 ~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~-~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      .+++. ....+.++++|+.|.++++..-.  + .-..+++|++|+++++.-..  ..+..+|+|+.|++.++.+..
T Consensus       203 ~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          203 KITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             CCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence            65432 12345667777777777765321  1 11134567777776643221  334566777777777766554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.03  E-value=1.4e-09  Score=108.91  Aligned_cols=102  Identities=19%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      ..++++|++...     ....+|+ +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-  .. +..++.|+
T Consensus        62 l~~L~~L~L~~n-----~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~  132 (308)
T 1h6u_A           62 LNNLIGLELKDN-----QITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQ  132 (308)
T ss_dssp             CTTCCEEECCSS-----CCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCC
T ss_pred             cCCCCEEEccCC-----cCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCC
Confidence            478999999764     2334555 778899999999999886656788999999999999988431  12 68899999


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccC
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~  207 (520)
                      .|++.+|..-....+.++++|+.|+++++..
T Consensus       133 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A          133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEECCCCccCcCccccCCCCccEEEccCCcC
Confidence            9999998632222255689999999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.03  E-value=2.3e-09  Score=116.28  Aligned_cols=147  Identities=10%  Similarity=0.052  Sum_probs=94.6

Q ss_pred             CCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccc---cccccccEEEeecCCchh----HHhcCCC
Q 039643          231 ATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVK---FSSNLLKRVAFLFCRSLR----AVDLDTP  301 (520)
Q Consensus       231 ~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~---~~f~~L~~L~L~~c~~l~----~lL~~~P  301 (520)
                      ..+++|++|+++++.+++. ....++++++|+.|.++++..-.  ...   ..+++|++|+++++....    ..+...+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            5678899999988877653 23456889999999999876421  111   245789999998754322    3456789


Q ss_pred             CccEeEecccCCCCcccccccCCCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccc
Q 039643          302 NLLSFTFESVRIPTISISASHQCPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKN  380 (520)
Q Consensus       302 ~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~  380 (520)
                      +|+.|+++++.+.......+. ..++ +.+.++.+. ++       ..-+.+++.|+.|.+..  +....++..      
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~i-------p~~~~~l~~L~~L~L~~--N~l~~l~~~------  491 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SI-------PKDVTHLQALQELNVAS--NQLKSVPDG------  491 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CC-------CTTTTSSCCCSEEECCS--SCCCCCCTT------
T ss_pred             cCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-cc-------ChhhcCCCCCCEEECCC--CCCCCCCHH------
Confidence            999999999987542011221 2343 455666555 22       22233889999999984  433344433      


Q ss_pred             cCCCCcccccceEEEE
Q 039643          381 RSPSLPFQVGNMRLIV  396 (520)
Q Consensus       381 asp~l~~~l~~L~l~~  396 (520)
                      +-..++ .|++|.+..
T Consensus       492 ~~~~l~-~L~~L~l~~  506 (562)
T 3a79_B          492 VFDRLT-SLQYIWLHD  506 (562)
T ss_dssp             STTTCT-TCCCEECCS
T ss_pred             HHhcCC-CCCEEEecC
Confidence            134457 889999884

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.03  E-value=3.7e-10  Score=116.55  Aligned_cols=218  Identities=17%  Similarity=0.158  Sum_probs=133.4

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-----CCccc-------CCCCCCCEEEecceecChH-
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-----EPLIA-------INLNSLKNLSLQRVYANEQ-  163 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-----~p~~~-------~~l~sLk~L~L~~v~~~~~-  163 (520)
                      ..++++|++............++..+..+++|++|+|++|.+.     .|...       ..+++|++|+|+++.+++. 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            3678988886531111112235555667899999999987442     12222       6889999999999988443 


Q ss_pred             --HHHHHHhcCCCcceeeeeccCCc----ceec--cccc---------cccceEEEecccCCCCce------eeeCCcee
Q 039643          164 --MVHNLIAECCSLEDLSLRYTLGL----KFFS--VSKA---------HKLKNMVIVDYSRSSELE------SIVAPSLQ  220 (520)
Q Consensus       164 --~l~~Lls~CP~LE~L~L~~c~~l----~~l~--I~~~---------~~Lk~L~I~~~~~~~~~~------~i~aP~L~  220 (520)
                        .+...+..|+.|+.|+|.+|...    ..+.  +..+         ++|+.|+++++......+      ....++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              45666788999999999998631    1110  1122         799999999887431111      12456777


Q ss_pred             EEEeccc------------cccCCCCCcceEEecccccchh---HHHHHHhCCcccceeeccccccccc----c--c---
Q 039643          221 QLTLVRV------------IVVATCPNLKKLHLSEIVLEDQ---EFHELISKFPLLEDLSVSSSQPLER----V--K---  276 (520)
Q Consensus       221 ~L~l~~~------------~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~l~~L~~L~L~~~~~l~~----~--~---  276 (520)
                      +|.+...            ..+..+++|+.|+|+++.+++.   .+...+..+++|+.|.|++|..-..    +  .   
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            7777520            1345677777777777766532   2345567777777777777663110    1  1   


Q ss_pred             cccccccEEEeecCCchh-------HHh-cCCCCccEeEecccCCC
Q 039643          277 FSSNLLKRVAFLFCRSLR-------AVD-LDTPNLLSFTFESVRIP  314 (520)
Q Consensus       277 ~~f~~L~~L~L~~c~~l~-------~lL-~~~P~L~~L~l~~~~~~  314 (520)
                      ...++|++|+|++|.-..       ..+ .++|+|+.|++.++.+.
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            114567777777653211       222 44677777777766543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.02  E-value=1.7e-09  Score=108.91  Aligned_cols=208  Identities=15%  Similarity=0.125  Sum_probs=145.0

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .++++|++....    .....|..+..+++|++|+|+++.+.. |...  +++|++|++.++.+.. .....+.+++.|+
T Consensus        76 ~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~  148 (330)
T 1xku_A           76 KNLHTLILINNK----ISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMI  148 (330)
T ss_dssp             TTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCC
T ss_pred             CCCCEEECCCCc----CCeeCHHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCcccc-cCHhHhcCCcccc
Confidence            679999986641    122337778889999999999987743 4433  3899999999998742 2234568899999


Q ss_pred             eeeeeccCC----cceeccccccccceEEEecccCCCCceeeeCCceeEEEecc-------ccccCCCCCcceEEecccc
Q 039643          177 DLSLRYTLG----LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIV  245 (520)
Q Consensus       177 ~L~L~~c~~----l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~  245 (520)
                      .|++.++..    .....+.++++|+.|+++++....-... ..++|++|.+..       +..+..+++|++|+++++.
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            999999853    2223355689999999999874211111 138999999862       3457889999999999887


Q ss_pred             cchhHHHHHHhCCcccceeecccccccc-ccc-cccccccEEEeecCCchh---HH------hcCCCCccEeEecccCCC
Q 039643          246 LEDQEFHELISKFPLLEDLSVSSSQPLE-RVK-FSSNLLKRVAFLFCRSLR---AV------DLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       246 ~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~-~~f~~L~~L~L~~c~~l~---~l------L~~~P~L~~L~l~~~~~~  314 (520)
                      +++. ....+.++++|+.|+++++.... +.. ..+++|++|++.++.-..   ..      ....+.|+.+++.++.+.
T Consensus       228 l~~~-~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          228 ISAV-DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCEE-CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             Ccee-ChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            7642 22356789999999999987421 111 245789999998753211   11      123477888888887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.00  E-value=1.9e-09  Score=118.45  Aligned_cols=248  Identities=18%  Similarity=0.128  Sum_probs=150.8

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .+++.|++...     ....+|..+.  ++|++|+|++|.+.. |.   .+++|++|+|+++.+..  ++   ..+++|+
T Consensus        40 ~~l~~L~ls~n-----~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L~  104 (622)
T 3g06_A           40 NGNAVLNVGES-----GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LP---VLPPGLL  104 (622)
T ss_dssp             HCCCEEECCSS-----CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CC---CCCTTCC
T ss_pred             CCCcEEEecCC-----CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CC---CCCCCCC
Confidence            46888888664     2347787765  799999999997754 43   68999999999998732  11   1679999


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc-CCCCCcceEEecccccchhHHHH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV-ATCPNLKKLHLSEIVLEDQEFHE  253 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~-~~l~~L~~L~L~~~~~~~~~~~~  253 (520)
                      .|+|++|.. ..+.- ..++|+.|+++++...  .+....++|++|.+...  ..+ ..+++|+.|+++++.++.-    
T Consensus       105 ~L~Ls~N~l-~~l~~-~l~~L~~L~L~~N~l~--~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l----  176 (622)
T 3g06_A          105 ELSIFSNPL-THLPA-LPSGLCKLWIFGNQLT--SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL----  176 (622)
T ss_dssp             EEEECSCCC-CCCCC-CCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC----
T ss_pred             EEECcCCcC-CCCCC-CCCCcCEEECCCCCCC--cCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCC----
Confidence            999998852 22222 3688999999888632  12223488888888631  112 2456788888887766541    


Q ss_pred             HHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCCcccccccCCCcE-EEEec
Q 039643          254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWN-VFFVH  332 (520)
Q Consensus       254 ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~  332 (520)
                       -..+++|+.|.++++.. ..++....+|+.|.+.++. +..+-...++|+.|+++++.+..+ ...+  ..++ +.+.+
T Consensus       177 -~~~~~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~l-p~~l--~~L~~L~Ls~  250 (622)
T 3g06_A          177 -PMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSL-PVLP--SELKELMVSG  250 (622)
T ss_dssp             -CCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCC-CCCC--TTCCEEECCS
T ss_pred             -cccCCCCcEEECCCCCC-CCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcC-CCCC--CcCcEEECCC
Confidence             15567888888887663 2233334677777776642 222223446777777777765544 1111  1233 34444


Q ss_pred             cccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          333 EHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                      +.+.+-        ..   ..+.|+.|.+..  |....++..+.       .++ +|++|.+.
T Consensus       251 N~L~~l--------p~---~~~~L~~L~Ls~--N~L~~lp~~l~-------~l~-~L~~L~L~  292 (622)
T 3g06_A          251 NRLTSL--------PM---LPSGLLSLSVYR--NQLTRLPESLI-------HLS-SETTVNLE  292 (622)
T ss_dssp             SCCSCC--------CC---CCTTCCEEECCS--SCCCSCCGGGG-------GSC-TTCEEECC
T ss_pred             CCCCcC--------Cc---ccccCcEEeCCC--CCCCcCCHHHh-------hcc-ccCEEEec
Confidence            444421        11   456677776663  33233443332       345 66777766

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.00  E-value=6.2e-10  Score=112.42  Aligned_cols=124  Identities=10%  Similarity=0.026  Sum_probs=61.3

Q ss_pred             cCCCCCcceEEecccccchh-HHHHHHhCCcccceeeccccccccccc-cccccccEEEeecCCchh---HHhcCCCCcc
Q 039643          230 VATCPNLKKLHLSEIVLEDQ-EFHELISKFPLLEDLSVSSSQPLERVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLL  304 (520)
Q Consensus       230 ~~~l~~L~~L~L~~~~~~~~-~~~~ll~~l~~L~~L~L~~~~~l~~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~  304 (520)
                      +..+++|++|+++++.++.. .....+.++ +|+.|.++++..-. ++ ..+.+|++|+++++....   ..+..+++|+
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~  220 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY  220 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            45666777777766655421 112233444 66777776655311 11 123466777666542211   3345666777


Q ss_pred             EeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          305 SFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       305 ~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                      .|+++++.+..+....+.. ..++ +.+..+.+. .+       ...+.+++.|+.|.+..
T Consensus       221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l-------p~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV-------PAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC-------CTTGGGCTTCCEEECCS
T ss_pred             EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec-------ChhhhcCccCCEEECCC
Confidence            7777766554331001111 1232 334444443 11       22246677788877774

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.00  E-value=2.1e-10  Score=115.11  Aligned_cols=181  Identities=16%  Similarity=0.106  Sum_probs=114.2

Q ss_pred             cCCCccEEEEeccccC--CCccc--CCCCCCCEEEecceecCh--HHHHHHHh-cCCCcceeeeeccCC--cceeccccc
Q 039643          124 SAKLLTTLVLNGCRLD--EPLIA--INLNSLKNLSLQRVYANE--QMVHNLIA-ECCSLEDLSLRYTLG--LKFFSVSKA  194 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l~--~p~~~--~~l~sLk~L~L~~v~~~~--~~l~~Lls-~CP~LE~L~L~~c~~--l~~l~I~~~  194 (520)
                      .+++|++|+|++|.+.  .|...  ..+++|++|+|+++.+.+  ..+..+.. .++.|++|++.++.-  ...-.+.++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            6789999999998774  25544  789999999999988732  23333311 138899999988853  222234557


Q ss_pred             cccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch--hHHHHHHhCCcccceeeccccccc
Q 039643          195 HKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED--QEFHELISKFPLLEDLSVSSSQPL  272 (520)
Q Consensus       195 ~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~ll~~l~~L~~L~L~~~~~l  272 (520)
                      ++|+.|+++++... ....+  |        ....+..+++|++|+++++.++.  .....++.++++|+.|+++++..-
T Consensus       173 ~~L~~L~Ls~N~l~-~~~~~--~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  241 (312)
T 1wwl_A          173 PALSTLDLSDNPEL-GERGL--I--------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR  241 (312)
T ss_dssp             SSCCEEECCSCTTC-HHHHH--H--------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred             CCCCEEECCCCCcC-cchHH--H--------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            88888888887631 00000  0        00113677888888888877763  334466778888888888887642


Q ss_pred             ccc--c--cccccccEEEeecCCchhHHhcC-CCCccEeEecccCCCCc
Q 039643          273 ERV--K--FSSNLLKRVAFLFCRSLRAVDLD-TPNLLSFTFESVRIPTI  316 (520)
Q Consensus       273 ~~~--~--~~f~~L~~L~L~~c~~l~~lL~~-~P~L~~L~l~~~~~~~~  316 (520)
                      ...  .  ....+|++|+++++.- ..+-.. .++|+.|+++++.+..+
T Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          242 DAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             SSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCCSEEEEEECCSSCCCSC
T ss_pred             cccchhhhhhcCCCCEEECCCCcc-ChhhhhccCCceEEECCCCCCCCC
Confidence            211  1  1246788888877432 211111 16888888888876654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.99  E-value=4.7e-10  Score=110.17  Aligned_cols=186  Identities=16%  Similarity=0.066  Sum_probs=89.6

Q ss_pred             CCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceEE
Q 039643          126 KLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNMV  201 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L~  201 (520)
                      ++|++|+|+++.+..  +..+.++++|++|+|+++.+.. .....+.+++.|+.|++.++.-..  .-.+.++++|+.|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            356666666655422  2245556666666666655421 001123455666666666654211  11233456666666


Q ss_pred             EecccCCC-Cc-eeeeCCceeEEEecc--------ccccCCCCCcceEEecccccchhHHHHHHhCCcccc----eeecc
Q 039643          202 IVDYSRSS-EL-ESIVAPSLQQLTLVR--------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE----DLSVS  267 (520)
Q Consensus       202 I~~~~~~~-~~-~~i~aP~L~~L~l~~--------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~----~L~L~  267 (520)
                      +.++.... .. .....++|++|.+..        +..+.++++|++|+++++.+++. ....+..+++++    .|.++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCEEEECC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhccccceeeecC
Confidence            66554211 00 111234444444421        22356677777777777665431 111222233333    56666


Q ss_pred             cccccc--ccccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643          268 SSQPLE--RVKFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       268 ~~~~l~--~~~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      ++..-.  +......+|++|+++++.-..   ..+..+|+|+.|+++++.+
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            655311  111122367777776643211   3445677777777766643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.98  E-value=1.6e-09  Score=119.96  Aligned_cols=251  Identities=17%  Similarity=0.129  Sum_probs=120.9

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+|+ .+..+++|++|+|+++.+..  |..+.++++|++|+|+++.+.. .....+++|+.
T Consensus        25 ~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~   98 (680)
T 1ziw_A           25 TNITVLNLTHN-----QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTN   98 (680)
T ss_dssp             TTCSEEECCSS-----CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCcEEECCCC-----CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCC
Confidence            45666666543     1223333 45556777777777665532  3345566777777777665521 00112456677


Q ss_pred             cceeeeeccCC--cceeccccccccceEEEecccCCC--CceeeeCCceeEEEeccc-------cc--cCCCCCcceEEe
Q 039643          175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVRV-------IV--VATCPNLKKLHL  241 (520)
Q Consensus       175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~~-------~~--~~~l~~L~~L~L  241 (520)
                      |++|++.+|..  +..-.+.++++|+.|+++++....  .......++|++|.+...       ..  ...+++|++|++
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence            77777776642  111224446677777777665311  111123455666555310       01  123355666666


Q ss_pred             cccccchhHHHHHHhCCcccceeecccccccc----c--cccccccccEEEeecCCchh---HHhcCC--CCccEeEecc
Q 039643          242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPLE----R--VKFSSNLLKRVAFLFCRSLR---AVDLDT--PNLLSFTFES  310 (520)
Q Consensus       242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~----~--~~~~f~~L~~L~L~~c~~l~---~lL~~~--P~L~~L~l~~  310 (520)
                      +.+.+++. ....++.+++|+.|.+..+....    .  ......+|++|.+.++....   ..+..+  ++|+.|++++
T Consensus       179 ~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          179 SSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             TTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred             CCCccccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence            55444321 12234455555555555443210    0  00122467777776543211   222233  3477777777


Q ss_pred             cCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEE
Q 039643          311 VRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLIN  362 (520)
Q Consensus       311 ~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~  362 (520)
                      +.+..+....+.. ..++ +.+.++.+.+.+       ...+.+++.|+.+.+.
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~  304 (680)
T 1ziw_A          258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-------SHSLHGLFNVRYLNLK  304 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSCCBSEEC-------TTTTTTCTTCCEEECT
T ss_pred             CCcCccCcccccCcccccEeeCCCCccCccC-------hhhhcCCCCccEEecc
Confidence            7654321111111 1233 344444444321       2334567777777775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.96  E-value=4.6e-10  Score=121.92  Aligned_cols=239  Identities=15%  Similarity=0.143  Sum_probs=151.3

Q ss_pred             ccCcccccCCCccEE-EEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee-cc-c
Q 039643          117 TLPQAIYSAKLLTTL-VLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF-SV-S  192 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L-~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l-~I-~  192 (520)
                      .++..+..|++|+.| .+..... ..+.....+++|++|+|.++.+++..+..++.+||+|+.|++.+|.....+ .+ .
T Consensus       256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~  335 (594)
T 2p1m_B          256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS  335 (594)
T ss_dssp             HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHH
Confidence            355677889999998 3433221 123334478999999999999888888888999999999999998321111 11 1


Q ss_pred             cccccceEEEecc--------cCCCCc----eeeeCCceeEEEecc-------cccc-CCCCCcceEEec--c----ccc
Q 039643          193 KAHKLKNMVIVDY--------SRSSEL----ESIVAPSLQQLTLVR-------VIVV-ATCPNLKKLHLS--E----IVL  246 (520)
Q Consensus       193 ~~~~Lk~L~I~~~--------~~~~~~----~~i~aP~L~~L~l~~-------~~~~-~~l~~L~~L~L~--~----~~~  246 (520)
                      ++++|++|++.++        ......    +.-.+|+|++|.+.+       ...+ ..+++|++|++.  +    +.+
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  415 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL  415 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence            3789999999653        111110    112379999996642       1122 358999999998  3    455


Q ss_pred             c----hhHHHHHHhCCcccceeecccccc---ccccccccccccEEEeecCCchh----HHhcCCCCccEeEecccCCCC
Q 039643          247 E----DQEFHELISKFPLLEDLSVSSSQP---LERVKFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       247 ~----~~~~~~ll~~l~~L~~L~L~~~~~---l~~~~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      +    +..+..++.++++|+.|.|++...   +.......++|++|.|+.|....    .+...+|+|+.|+++++.+..
T Consensus       416 ~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          416 TLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             TCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             cCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            5    445677889999999999976211   01111236789999998876422    444779999999999998742


Q ss_pred             ccc-ccccCC-CcE-EEEeccccccChhhHHHHHHHHHhccccccceEE
Q 039643          316 ISI-SASHQC-PWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLI  361 (520)
Q Consensus       316 ~~~-~~l~~~-~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i  361 (520)
                      ... .....+ .|+ +.+.++....      ..++.+....+.|+...+
T Consensus       496 ~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~~lp~l~i~~~  538 (594)
T 2p1m_B          496 KALLANASKLETMRSLWMSSCSVSF------GACKLLGQKMPKLNVEVI  538 (594)
T ss_dssp             HHHHHTGGGGGGSSEEEEESSCCBH------HHHHHHHHHCTTEEEEEE
T ss_pred             HHHHHHHHhCCCCCEEeeeCCCCCH------HHHHHHHHhCCCCEEEEe
Confidence            101 111211 244 5566666542      223445455566654333

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.95  E-value=8.7e-10  Score=108.76  Aligned_cols=187  Identities=13%  Similarity=0.008  Sum_probs=131.4

Q ss_pred             hCCceEEEEEecCCCCCcccccC-cccccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee-cChHHHHHHHhcC
Q 039643           97 GNGVKELHIVVESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY-ANEQMVHNLIAEC  172 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~C  172 (520)
                      ..++++|++...     ....+| ..+..+++|++|+|+++.+..  |..+.++++|++|+|+++. +.. .....+.++
T Consensus        31 ~~~l~~L~l~~n-----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l  104 (285)
T 1ozn_A           31 PAASQRIFLHGN-----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGL  104 (285)
T ss_dssp             CTTCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTC
T ss_pred             CCCceEEEeeCC-----cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCC
Confidence            357888888653     223344 456778999999999986632  5678889999999999886 422 112235678


Q ss_pred             CCcceeeeeccCC--cceeccccccccceEEEecccCCC-C-ceeeeCCceeEEEecc-------ccccCCCCCcceEEe
Q 039643          173 CSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS-E-LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHL  241 (520)
Q Consensus       173 P~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~-~-~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L  241 (520)
                      +.|+.|++.++..  ...-.+.++++|+.|+++++.... + ...-..++|++|.+..       ...+..+++|++|++
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            9999999999853  222235568999999999987421 1 1123568999999862       223678999999999


Q ss_pred             cccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecC
Q 039643          242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFC  290 (520)
Q Consensus       242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c  290 (520)
                      +++.+++. ....+.++++|+.|+++++....  +. -..+++|++|++.++
T Consensus       185 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          185 HQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CSSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             CCCccccc-CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            98877652 23457789999999999986422  11 124578999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.95  E-value=9.9e-10  Score=113.31  Aligned_cols=93  Identities=11%  Similarity=0.148  Sum_probs=66.8

Q ss_pred             ccccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEEecceecC------hHHH---HHHHhcCCCcceee
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYAN------EQMV---HNLIAECCSLEDLS  179 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~~------~~~l---~~Lls~CP~LE~L~  179 (520)
                      ...++..+..+++|++|+|++|.+..      +..+..+++|++|+|+++.+.      +..+   ...+..|+.|+.|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34677788888999999999987643      123568999999999987442      1233   23357899999999


Q ss_pred             eeccCCcc----ee--ccccccccceEEEecccC
Q 039643          180 LRYTLGLK----FF--SVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       180 L~~c~~l~----~l--~I~~~~~Lk~L~I~~~~~  207 (520)
                      |++|....    .+  .+..+++|+.|++++|..
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            99985221    11  234578999999999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.94  E-value=2.2e-09  Score=105.23  Aligned_cols=179  Identities=16%  Similarity=0.062  Sum_probs=112.5

Q ss_pred             cccCcccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceecc
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSV  191 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I  191 (520)
                      ..+|..+.  ++|++|+|+++.+.. + ..+.++++|++|+|+++.+.. .....+.+++.|+.|++.++.-.  ..-.+
T Consensus        29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  105 (270)
T 2o6q_A           29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVF  105 (270)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence            34665543  578999999887643 3 357788999999998887631 11123466888888888887521  11123


Q ss_pred             ccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643          192 SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       192 ~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      .++++|+.|+++++....    +           .+..+..+++|++|+++++.++. .....++++++|+.|.++++..
T Consensus       106 ~~l~~L~~L~l~~n~l~~----~-----------~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQLKS----L-----------PPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             TTCSSCCEEECCSSCCCC----C-----------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccCCCEEECCCCccCe----e-----------CHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcC
Confidence            446788888888775310    0           01234667788888887766653 1223466778888888877653


Q ss_pred             cc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643          272 LE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       272 l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      ..  +. -..+++|++|+++++.-..   ..+..+|+|+.|++.++++
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            21  11 1134678888887643211   3456788888888887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.93  E-value=6.6e-09  Score=112.61  Aligned_cols=100  Identities=17%  Similarity=0.068  Sum_probs=59.7

Q ss_pred             CCceEEEEEecCCCCCcccccC-cccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+| ..+..+++|++|+|++|.+..  |..+.++++|++|+|+++.+..  ++..  .++.
T Consensus        52 ~~L~~L~Ls~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~  122 (562)
T 3a79_B           52 PRTKALSLSQN-----SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PMAS  122 (562)
T ss_dssp             TTCCEEECCSS-----CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CCTT
T ss_pred             CCcCEEECCCC-----CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--cccc
Confidence            56777777654     122333 456667777888887776532  4456677777777777776531  1111  5677


Q ss_pred             cceeeeeccCCcc-e--eccccccccceEEEeccc
Q 039643          175 LEDLSLRYTLGLK-F--FSVSKAHKLKNMVIVDYS  206 (520)
Q Consensus       175 LE~L~L~~c~~l~-~--l~I~~~~~Lk~L~I~~~~  206 (520)
                      |+.|+++++.... .  -.+.++++|+.|+++++.
T Consensus       123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            7777777765211 1  234446667777766654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.91  E-value=8.7e-10  Score=110.54  Aligned_cols=125  Identities=14%  Similarity=0.036  Sum_probs=84.6

Q ss_pred             cccCCCCCcceEEecccccchhH-HHHH--HhCCcccceeecccccccc--ccc----cccccccEEEeecCCchh----
Q 039643          228 IVVATCPNLKKLHLSEIVLEDQE-FHEL--ISKFPLLEDLSVSSSQPLE--RVK----FSSNLLKRVAFLFCRSLR----  294 (520)
Q Consensus       228 ~~~~~l~~L~~L~L~~~~~~~~~-~~~l--l~~l~~L~~L~L~~~~~l~--~~~----~~f~~L~~L~L~~c~~l~----  294 (520)
                      ..+..+++|++|+++++.+.+.. ...-  ++++++|+.|.++++..-.  ...    ..+++|++|+++++.-..    
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence            35678999999999998866531 2222  3889999999999987421  111    134789999998754322    


Q ss_pred             HHhcCCCCccEeEecccCCCCcccccccCCCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643          295 AVDLDTPNLLSFTFESVRIPTISISASHQCPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL  363 (520)
Q Consensus       295 ~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~  363 (520)
                      ......++|+.|+++++.+..+ ...+. ..++ +.+.++.+.+.        .. +.+++.|+.+.+..
T Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-~~L~~L~Ls~N~l~~~--------p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTGLKQV-PKGLP-AKLSVLDLSYNRLDRN--------PS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             SCCCCCTTCCEEECTTSCCSSC-CSSCC-SEEEEEECCSSCCCSC--------CC-TTTSCEEEEEECTT
T ss_pred             hhhhhcCCCCEEECCCCccChh-hhhcc-CCceEEECCCCCCCCC--------hh-HhhCCCCCEEeccC
Confidence            2334578999999999987754 22222 3354 55677777654        22 56788899888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.91  E-value=1.3e-09  Score=110.13  Aligned_cols=189  Identities=16%  Similarity=0.049  Sum_probs=85.7

Q ss_pred             ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccc
Q 039643          121 AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHK  196 (520)
Q Consensus       121 ~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~  196 (520)
                      .+..+++|++|+|++|.+..  |..+.++++|++|+|+++.+..  ++.  ...+.|++|++.++..  +..-.+.++++
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRN  148 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEEECCCCccCccCHhHhCCCcc
Confidence            44555666666666654422  3345556666666666555421  000  0125566666655531  11111334556


Q ss_pred             cceEEEecccCC---CCceeeeCCceeEEEeccc----cccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccc
Q 039643          197 LKNMVIVDYSRS---SELESIVAPSLQQLTLVRV----IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSS  269 (520)
Q Consensus       197 Lk~L~I~~~~~~---~~~~~i~aP~L~~L~l~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~  269 (520)
                      |+.|+++++...   .....+...+|++|.+...    ....-.++|++|+++++.+++. ....+.++++|+.|.++++
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSS
T ss_pred             CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCC
Confidence            666666655421   0011111124555444310    0001124566666665554431 1123455666666666665


Q ss_pred             cccc--c-cccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCC
Q 039643          270 QPLE--R-VKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       270 ~~l~--~-~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~  314 (520)
                      ..-.  + .-..+++|++|+++++.-..  ..+..+|+|+.|+++++.+.
T Consensus       228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred             cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence            4311  1 11123456666665532211  22455666666666666544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.90  E-value=4.3e-09  Score=103.31  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             cCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccceEE
Q 039643          124 SAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKNMV  201 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~L~  201 (520)
                      .+++|+.|.++++.+...+....+++|++|+|.++.+.+-  . -+..++.|+.|++.+|.--  ..-.+.++++|+.|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3456666666666554434456666777777766665321  1 2456666677666666421  111133456666666


Q ss_pred             Eeccc
Q 039643          202 IVDYS  206 (520)
Q Consensus       202 I~~~~  206 (520)
                      ++++.
T Consensus       116 L~~n~  120 (272)
T 3rfs_A          116 LVENQ  120 (272)
T ss_dssp             CTTSC
T ss_pred             CCCCc
Confidence            66665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.90  E-value=5e-09  Score=104.12  Aligned_cols=166  Identities=16%  Similarity=0.080  Sum_probs=75.1

Q ss_pred             CCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEec
Q 039643          125 AKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVD  204 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~  204 (520)
                      +++|+.|.+++|.+...+.+..+++|++|+|+++.+.+-.  . ++.++.|+.|++.++.--..-.+.++++|+.|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence            4455566665554433233455566666666655552111  1 455566666666555321111133355566666655


Q ss_pred             ccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-cccccccccc
Q 039643          205 YSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLK  283 (520)
Q Consensus       205 ~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~  283 (520)
                      +....  +               ..+..+++|+.|+++++.+++-   ..+.++++|+.|.++++..-. +.-..+++|+
T Consensus       122 n~i~~--~---------------~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~  181 (291)
T 1h6t_A          122 NGISD--I---------------NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  181 (291)
T ss_dssp             SCCCC--C---------------GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             CcCCC--C---------------hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchhhcCCCccC
Confidence            54210  0               0123344444444444443321   234444555555554443211 0011234455


Q ss_pred             EEEeecCCchh-HHhcCCCCccEeEecccCC
Q 039643          284 RVAFLFCRSLR-AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       284 ~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~  313 (520)
                      +|+++++.-.. ..+..+|+|+.|++.++.+
T Consensus       182 ~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          182 NLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             EEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence            55554432111 2245666777777766643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.87  E-value=4.3e-09  Score=101.05  Aligned_cols=171  Identities=12%  Similarity=0.070  Sum_probs=89.1

Q ss_pred             CCccEEEEeccccCC-Cc-ccCCCCCCCEEEeccee-cChHHHHHHHhcCCCcceeeeeccCCccee---ccccccccce
Q 039643          126 KLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVY-ANEQMVHNLIAECCSLEDLSLRYTLGLKFF---SVSKAHKLKN  199 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l---~I~~~~~Lk~  199 (520)
                      .+|++|+|+++.+.. |+ .+.++++|++|+|+++. +.. .....+.+++.|+.|++.+|..+..+   .+.++++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            377788888776633 33 46677888888887775 421 00112456778888888774434332   2334677777


Q ss_pred             EEEecccCCCCceeeeCCceeEEEeccccccCCCCCcc---eEEeccc-ccchhHHHHHHhCCcccc-eeeccccccc--
Q 039643          200 MVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLK---KLHLSEI-VLEDQEFHELISKFPLLE-DLSVSSSQPL--  272 (520)
Q Consensus       200 L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~---~L~L~~~-~~~~~~~~~ll~~l~~L~-~L~L~~~~~l--  272 (520)
                      |+++++....      .|           .+..+++|+   .++++++ .++. .....++++++|+ .|.++++..-  
T Consensus       110 L~l~~n~l~~------lp-----------~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C          110 LGIFNTGLKM------FP-----------DLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             EEEEEECCCS------CC-----------CCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             EeCCCCCCcc------cc-----------ccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCccc
Confidence            7777775310      01           123333443   5555554 4332 1112345566666 6666554421  


Q ss_pred             cccccccccccEEEeecCCchh----HHhcCC-CCccEeEecccCCCC
Q 039643          273 ERVKFSSNLLKRVAFLFCRSLR----AVDLDT-PNLLSFTFESVRIPT  315 (520)
Q Consensus       273 ~~~~~~f~~L~~L~L~~c~~l~----~lL~~~-P~L~~L~l~~~~~~~  315 (520)
                      ........+|++|++.++..+.    ..+..+ ++|+.|+++++.+..
T Consensus       172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            1101111356666665543222    334455 666666666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.87  E-value=3.3e-09  Score=116.28  Aligned_cols=144  Identities=20%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             ccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceE
Q 039643          121 AIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNM  200 (520)
Q Consensus       121 ~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L  200 (520)
                      .+..+++|+.|+|++|.+...+.+..+++|+.|+|+++.+.+-  + -+..++.|+.|+|.+|.....-.+.++++|+.|
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  136 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL  136 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred             HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence            3556677777777776654322266677777777777666321  1 245667777777776642111123446677777


Q ss_pred             EEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          201 VIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       201 ~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      ++++|....-......++|+.|.+..     ...+..+++|+.|+|+++.+++-   ..+..+++|+.|.|+++.
T Consensus       137 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          137 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred             ECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence            77666532111111334444444431     11134444444444444444321   123444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.82  E-value=1.4e-09  Score=108.90  Aligned_cols=180  Identities=14%  Similarity=0.079  Sum_probs=95.2

Q ss_pred             CCCccEEEEeccccC-C-Cccc--CCCCCCCEEEecceecChH--HHH-HHHhcCCCcceeeeeccCCcc--eecccccc
Q 039643          125 AKLLTTLVLNGCRLD-E-PLIA--INLNSLKNLSLQRVYANEQ--MVH-NLIAECCSLEDLSLRYTLGLK--FFSVSKAH  195 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~-~-p~~~--~~l~sLk~L~L~~v~~~~~--~l~-~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~  195 (520)
                      +++|++|+|++|.+. . |..+  ..+++|++|+|+++.+.+.  .+. .-+..++.|+.|+|.+|.-..  .-.+.+++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            356888888887653 2 4444  6788888888888776321  111 223467888888888775311  12334567


Q ss_pred             ccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch--hHHHHHHhCCcccceeecccccccc
Q 039643          196 KLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED--QEFHELISKFPLLEDLSVSSSQPLE  273 (520)
Q Consensus       196 ~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~ll~~l~~L~~L~L~~~~~l~  273 (520)
                      +|+.|+++++.... ...+.          ....+..+++|++|+++++.++.  .....+++++++|+.|+|+++....
T Consensus       170 ~L~~L~Ls~N~l~~-~~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          170 ALTSLDLSDNPGLG-ERGLM----------AALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             TCCEEECCSCTTCH-HHHHH----------TTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred             CCCEEECCCCCCcc-chhhh----------HHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence            78888887775210 00000          00112456666666666665542  2222345666677777776665321


Q ss_pred             --cccc-cc---ccccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643          274 --RVKF-SS---NLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       274 --~~~~-~f---~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~  315 (520)
                        +... .+   ++|++|+++++.-..-.-.-.++|+.|+++++.+..
T Consensus       239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          239 TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred             cchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC
Confidence              1111 11   466666666532211000112566777776665554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.82  E-value=1.3e-08  Score=101.15  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             cCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          230 VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       230 ~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +..+++|++|+++++.++. .....+.++++|+.|.++++.
T Consensus       120 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G          120 LRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             TTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSC
T ss_pred             HcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCc
Confidence            4555566666666555432 122334555666666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.81  E-value=5.1e-09  Score=102.76  Aligned_cols=190  Identities=17%  Similarity=0.060  Sum_probs=125.8

Q ss_pred             hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      -.++++|.+...     ....+ +.+..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+ .....+.+++.|+
T Consensus        40 l~~L~~L~l~~~-----~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  112 (272)
T 3rfs_A           40 LNSIDQIIANNS-----DIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLK  112 (272)
T ss_dssp             HTTCCEEECTTS-----CCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCC
T ss_pred             ccceeeeeeCCC-----Ccccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCC
Confidence            356888887553     11223 3567789999999999988665678899999999999998742 1123357889999


Q ss_pred             eeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHH
Q 039643          177 DLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHEL  254 (520)
Q Consensus       177 ~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l  254 (520)
                      .|++.+|...  ..-.+.++++|+.|+++++....  +  .           +..+..+++|++|+++++.+++ .....
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~--~-----------~~~~~~l~~L~~L~l~~n~l~~-~~~~~  176 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--L--P-----------KGVFDKLTNLTELDLSYNQLQS-LPEGV  176 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--C--C-----------TTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--c--C-----------HHHhccCccCCEEECCCCCcCc-cCHHH
Confidence            9999998632  12224557899999999886311  0  0           1124567778888887776653 22344


Q ss_pred             HhCCcccceeecccccccc--cc-ccccccccEEEeecCCchhHHhcCCCCccEeEecccCC
Q 039643          255 ISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       255 l~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~  313 (520)
                      ++++++|+.|.++++..-.  +. -..+++|++|++.++.    +...+|+|+.|.+..+.+
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWINKH  234 (272)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHHHHT
T ss_pred             hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHHHhC
Confidence            6677888888888776422  11 1235678888887643    124567777777665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.78  E-value=1.5e-08  Score=94.41  Aligned_cols=147  Identities=17%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|++...     ....+| .+..+++|++|++++|.+..++.+..+++|++|+|+++.+.+.... .++.+|.|+.
T Consensus        44 ~~L~~L~l~~n-----~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~  116 (197)
T 4ezg_A           44 NSLTYITLANI-----NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTL  116 (197)
T ss_dssp             HTCCEEEEESS-----CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCE
T ss_pred             CCccEEeccCC-----CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCE
Confidence            45777777653     122455 5666777888888877665555667778888888877766432221 2456777888


Q ss_pred             eeeeccCCcc--eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHH
Q 039643          178 LSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELI  255 (520)
Q Consensus       178 L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll  255 (520)
                      |++.+|....  .-.+.++++|+.|++++|.....                ...+..+++|++|+++++.+++-   ..+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~----------------~~~l~~l~~L~~L~l~~n~i~~~---~~l  177 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD----------------IMPLKTLPELKSLNIQFDGVHDY---RGI  177 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC----------------CGGGGGCSSCCEEECTTBCCCCC---TTG
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc----------------cHhhcCCCCCCEEECCCCCCcCh---HHh
Confidence            8777775321  12234467777777777751000                01356788888888888777652   156


Q ss_pred             hCCcccceeeccccc
Q 039643          256 SKFPLLEDLSVSSSQ  270 (520)
Q Consensus       256 ~~l~~L~~L~L~~~~  270 (520)
                      .++++|+.|.++++.
T Consensus       178 ~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGCSSCCEEEECBC-
T ss_pred             ccCCCCCEEEeeCcc
Confidence            788889999888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.77  E-value=3.1e-08  Score=98.30  Aligned_cols=163  Identities=17%  Similarity=0.174  Sum_probs=104.1

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|++...     ....+| .+..+++|++|+|++|.+...+.+..+++|+.|+|+++.+.+  +.. +..++.|+.
T Consensus        46 ~~L~~L~l~~~-----~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~  116 (291)
T 1h6t_A           46 NSIDQIIANNS-----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKS  116 (291)
T ss_dssp             HTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCE
T ss_pred             CcccEEEccCC-----CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCE
Confidence            45788877553     122344 367789999999999987542338899999999999998843  122 678999999


Q ss_pred             eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhC
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK  257 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~  257 (520)
                      |++.+|.--..-.+..+++|+.|+++++....-                 ..+..+++|++|+++++.+++...   +.+
T Consensus       117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~l~~l~~L~~L~L~~N~l~~~~~---l~~  176 (291)
T 1h6t_A          117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-----------------TVLSRLTKLDTLSLEDNQISDIVP---LAG  176 (291)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----------------GGGGGCTTCSEEECCSSCCCCCGG---GTT
T ss_pred             EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-----------------hhhccCCCCCEEEccCCccccchh---hcC
Confidence            999998632222355689999999998864211                 123455666666666655543211   556


Q ss_pred             Ccccceeecccccccc-ccccccccccEEEeec
Q 039643          258 FPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLF  289 (520)
Q Consensus       258 l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~  289 (520)
                      +++|+.|.++++..-. +.-..+++|+.|++.+
T Consensus       177 l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (291)
T ss_dssp             CTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             CCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence            6666666666654211 1112344566666655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.77  E-value=1.1e-08  Score=100.32  Aligned_cols=170  Identities=20%  Similarity=0.123  Sum_probs=106.3

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC-Ccc-cCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE-PLI-AINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~-p~~-~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+|. .+..+++|++|+|+++.+.. |+. +.++++|++|+|+++.+.. .....+.+++.
T Consensus        37 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~  110 (270)
T 2o6q_A           37 ADTKKLDLQSN-----KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVN  110 (270)
T ss_dssp             TTCSEEECCSS-----CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSS
T ss_pred             CCCCEEECcCC-----CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccC
Confidence            57889988664     2234554 66788999999999987743 443 5789999999999988732 11134577899


Q ss_pred             cceeeeeccCC--cceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHH
Q 039643          175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFH  252 (520)
Q Consensus       175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~  252 (520)
                      |+.|++.++..  +..-.+.++++|+.|+++++....  +  .           ...+..+++|++|+++++.++.. ..
T Consensus       111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~--~-----------~~~~~~l~~L~~L~L~~n~l~~~-~~  174 (270)
T 2o6q_A          111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--L--P-----------KGVFDKLTSLKELRLYNNQLKRV-PE  174 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--C--C-----------TTTTTTCTTCCEEECCSSCCSCC-CT
T ss_pred             CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--c--C-----------HhHccCCcccceeEecCCcCcEe-Ch
Confidence            99999999852  222224558999999999886321  0  0           11234566666666665554331 11


Q ss_pred             HHHhCCcccceeecccccccc-cc--ccccccccEEEeec
Q 039643          253 ELISKFPLLEDLSVSSSQPLE-RV--KFSSNLLKRVAFLF  289 (520)
Q Consensus       253 ~ll~~l~~L~~L~L~~~~~l~-~~--~~~f~~L~~L~L~~  289 (520)
                      ..+.++++|+.|.++++..-. +.  -..+++|+.|++.+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            234556666666666654311 11  11234566666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.75  E-value=3.4e-08  Score=104.51  Aligned_cols=196  Identities=16%  Similarity=0.067  Sum_probs=118.6

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .++++|++...     ....+| .+..+++|++|++++|.+.. |.   ..++|++|+|.++.+.+  ++. +.+++.|+
T Consensus       131 ~~L~~L~L~~n-----~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~  198 (454)
T 1jl5_A          131 PLLEYLGVSNN-----QLEKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEE--LPE-LQNLPFLT  198 (454)
T ss_dssp             TTCCEEECCSS-----CCSSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS--CCC-CTTCTTCC
T ss_pred             CCCCEEECcCC-----CCCCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCc--Ccc-ccCCCCCC
Confidence            57899988764     122477 57888999999999987743 32   34689999999888733  222 57789999


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc-CCCCCcceEEecccccchhHHHH
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV-ATCPNLKKLHLSEIVLEDQEFHE  253 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~-~~l~~L~~L~L~~~~~~~~~~~~  253 (520)
                      .|++.+|.-.. +.-. .++|+.|+++++....-......++|++|.+...  ..+ ..+++|+.|+++++.+++     
T Consensus       199 ~L~l~~N~l~~-l~~~-~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-----  271 (454)
T 1jl5_A          199 AIYADNNSLKK-LPDL-PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-----  271 (454)
T ss_dssp             EEECCSSCCSS-CCCC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-----
T ss_pred             EEECCCCcCCc-CCCC-cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-----
Confidence            99998875221 1111 3578888888876421011225677888877531  111 234677888887766543     


Q ss_pred             HHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCC-CCccEeEecccCCCC
Q 039643          254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDT-PNLLSFTFESVRIPT  315 (520)
Q Consensus       254 ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~-P~L~~L~l~~~~~~~  315 (520)
                      +-...++|+.|+++++.. ...+...++|++|+++++.- .. +... ++|+.|+++++.+..
T Consensus       272 l~~~~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N~l-~~-i~~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          272 LPELPQSLTFLDVSENIF-SGLSELPPNLYYLNASSNEI-RS-LCDLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             CCCCCTTCCEEECCSSCC-SEESCCCTTCCEEECCSSCC-SE-ECCCCTTCCEEECCSSCCSC
T ss_pred             cCcccCcCCEEECcCCcc-CcccCcCCcCCEEECcCCcC-Cc-ccCCcCcCCEEECCCCcccc
Confidence            112346777777777652 21111225677777765322 11 1123 367777776665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.75  E-value=1.5e-08  Score=97.18  Aligned_cols=190  Identities=13%  Similarity=0.027  Sum_probs=108.6

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccc-cCC-C-cccCCCCCCCEEEecc-eecChHHHHHHHhcC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCR-LDE-P-LIAINLNSLKNLSLQR-VYANEQMVHNLIAEC  172 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~-l~~-p-~~~~~l~sLk~L~L~~-v~~~~~~l~~Lls~C  172 (520)
                      .++++|++...     ....+|+ .+..+++|++|+|+++. +.. + ..+.++++|++|+|++ +.+.. .....+.++
T Consensus        31 ~~l~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l  104 (239)
T 2xwt_C           31 PSTQTLKLIET-----HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKEL  104 (239)
T ss_dssp             TTCCEEEEESC-----CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECC
T ss_pred             CcccEEEEeCC-----cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCC
Confidence            47899999774     2335555 56678999999999985 643 3 3578999999999998 65531 111235679


Q ss_pred             CCcceeeeeccCCcceeccccccccc---eEEEecc-cCCCCceeeeCCceeEEEeccccccCCCCCcc-eEEecccccc
Q 039643          173 CSLEDLSLRYTLGLKFFSVSKAHKLK---NMVIVDY-SRSSELESIVAPSLQQLTLVRVIVVATCPNLK-KLHLSEIVLE  247 (520)
Q Consensus       173 P~LE~L~L~~c~~l~~l~I~~~~~Lk---~L~I~~~-~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~-~L~L~~~~~~  247 (520)
                      +.|+.|++.++.-..--.+.++++|+   .|+++++ ...    .+.           ...+.++++|+ +++++++.++
T Consensus       105 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~----~i~-----------~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT----SIP-----------VNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             TTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC----EEC-----------TTTTTTTBSSEEEEECCSCCCC
T ss_pred             CCCCEEeCCCCCCccccccccccccccccEEECCCCcchh----hcC-----------cccccchhcceeEEEcCCCCCc
Confidence            99999999998521111144467777   9999988 421    110           11244555666 6666555443


Q ss_pred             hhHHHHHHhCCcccceeecccccccccc---c-ccc-ccccEEEeecCCchhHHhcCCCCccEeEecc
Q 039643          248 DQEFHELISKFPLLEDLSVSSSQPLERV---K-FSS-NLLKRVAFLFCRSLRAVDLDTPNLLSFTFES  310 (520)
Q Consensus       248 ~~~~~~ll~~l~~L~~L~L~~~~~l~~~---~-~~f-~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~  310 (520)
                      . .....+.. ++|+.|.++++..+..+   . ... ++|+.|+++++.-........++|+.|.+.+
T Consensus       170 ~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          170 S-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN  235 (239)
T ss_dssp             E-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTT
T ss_pred             c-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccC
Confidence            1 11122333 56666666655322111   1 123 4566666655221111112455666666544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.75  E-value=1.5e-08  Score=100.70  Aligned_cols=161  Identities=19%  Similarity=0.082  Sum_probs=108.7

Q ss_pred             CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .++++++...     ....+|..+.  ++|++|+|+++.+..  +..+.++++|+.|+|+++.+..-..   ...++.|+
T Consensus        11 ~l~~l~~~~~-----~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~   80 (290)
T 1p9a_G           11 SHLEVNCDKR-----NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLG   80 (290)
T ss_dssp             TCCEEECTTS-----CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCC
T ss_pred             CccEEECCCC-----CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCC
Confidence            4556655432     2345666654  688899998886643  4567888999999998887732111   15788899


Q ss_pred             eeeeeccCCcc-eeccccccccceEEEecccCCC-C-ceeeeCCceeEEEecc-------ccccCCCCCcceEEeccccc
Q 039643          177 DLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRSS-E-LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVL  246 (520)
Q Consensus       177 ~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~~-~-~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~  246 (520)
                      .|+++++.--. ...+.++++|+.|+++++.... + ...-..++|++|.+..       ...+..+++|+.|+++++.+
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            99998875211 1123457889999998886421 1 1123467888888862       22356789999999999887


Q ss_pred             chhHHHHHHhCCcccceeeccccc
Q 039643          247 EDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       247 ~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +. .....+.++++|+.|.|+++.
T Consensus       161 ~~-l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          161 TE-LPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             SC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             Cc-cCHHHhcCcCCCCEEECCCCc
Confidence            64 233456788999999998876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.74  E-value=1.6e-08  Score=110.87  Aligned_cols=163  Identities=16%  Similarity=0.123  Sum_probs=112.3

Q ss_pred             ccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEE
Q 039643          123 YSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVI  202 (520)
Q Consensus       123 ~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I  202 (520)
                      ..+++|+.|.|++|.+...+.+..+++|+.|+|+++.+.+-.  . +..++.|+.|+|.+|..-..-.+..+++|+.|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence            345678888888887755456778889999999888873211  1 6788899999988885322224556788889988


Q ss_pred             ecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-ccc
Q 039643          203 VDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVK  276 (520)
Q Consensus       203 ~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~  276 (520)
                      +++...........|+|+.|.+..     ...+..+++|+.|+|+.+.+++...   +..+++|+.|.|++|..-. +.-
T Consensus       117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~l  193 (605)
T 1m9s_A          117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRAL  193 (605)
T ss_dssp             TTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGGG
T ss_pred             cCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCChHH
Confidence            888743212233568888888862     2346778889999988887765322   7788889999988876421 112


Q ss_pred             cccccccEEEeecCC
Q 039643          277 FSSNLLKRVAFLFCR  291 (520)
Q Consensus       277 ~~f~~L~~L~L~~c~  291 (520)
                      ..+++|+.|+|.+|.
T Consensus       194 ~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          194 AGLKNLDVLELFSQE  208 (605)
T ss_dssp             TTCTTCSEEECCSEE
T ss_pred             ccCCCCCEEEccCCc
Confidence            245688888887743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.74  E-value=7.5e-09  Score=105.91  Aligned_cols=187  Identities=12%  Similarity=0.028  Sum_probs=115.3

Q ss_pred             ccCcccccCCCccEEEEeccccCC-C-----cccCCCC-CCCEEEecceecC---hHHHHHHHhcC-CCcceeeeeccCC
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE-P-----LIAINLN-SLKNLSLQRVYAN---EQMVHNLIAEC-CSLEDLSLRYTLG  185 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~-p-----~~~~~l~-sLk~L~L~~v~~~---~~~l~~Lls~C-P~LE~L~L~~c~~  185 (520)
                      .+|..+...++|++|+|++|.+.. +     ..+..++ +|++|+|+++.++   ...+..++..+ +.|++|+|++|.-
T Consensus        13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            345554555669999999987743 2     3456788 8999999998873   34566666665 8999999998862


Q ss_pred             cc--eec----cccc-cccceEEEecccCCCCceeeeCCceeEEEeccccccCC-CCCcceEEecccccchh---HHHHH
Q 039643          186 LK--FFS----VSKA-HKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVAT-CPNLKKLHLSEIVLEDQ---EFHEL  254 (520)
Q Consensus       186 l~--~l~----I~~~-~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~-l~~L~~L~L~~~~~~~~---~~~~l  254 (520)
                      -.  ...    +... ++|+.|+++++........    .+       ...+.. .++|++|+++++.+++.   .+...
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l-------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS----EF-------KQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH----HH-------HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH----HH-------HHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            11  111    2223 6888888888763110000    00       001234 35899999998887642   34455


Q ss_pred             HhCCc-ccceeeccccccccccc-------ccc-ccccEEEeecCCchh-------HHhcC-CCCccEeEecccCCC
Q 039643          255 ISKFP-LLEDLSVSSSQPLERVK-------FSS-NLLKRVAFLFCRSLR-------AVDLD-TPNLLSFTFESVRIP  314 (520)
Q Consensus       255 l~~l~-~L~~L~L~~~~~l~~~~-------~~f-~~L~~L~L~~c~~l~-------~lL~~-~P~L~~L~l~~~~~~  314 (520)
                      +..++ +|+.|.|++|..-....       ..+ .+|++|+|+++.-..       ..+.. .++|+.|+++++.+.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            66666 89999999886421110       112 478888887753211       23333 458888888777544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.72  E-value=1.9e-08  Score=93.73  Aligned_cols=147  Identities=16%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             ccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceE
Q 039643          123 YSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNM  200 (520)
Q Consensus       123 ~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L  200 (520)
                      ..+++|++|+++++.+...+....+++|++|++.++.+..-.   -++.+|.|+.|++.+|.--.  .-.+.++++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            456789999999987754236888999999999998763211   36778999999999885321  2335567888988


Q ss_pred             EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccc-cchhHHHHHHhCCcccceeecccccccc-ccccc
Q 039643          201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFS  278 (520)
Q Consensus       201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~  278 (520)
                      +++++....  .             .+..+..+++|++|+++++. ++.-   ..+.++++|+.|.+++|..-. +.-..
T Consensus       118 ~Ls~n~i~~--~-------------~~~~l~~l~~L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n~i~~~~~l~~  179 (197)
T 4ezg_A          118 DISHSAHDD--S-------------ILTKINTLPKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDGVHDYRGIED  179 (197)
T ss_dssp             ECCSSBCBG--G-------------GHHHHTTCSSCCEEECCSCTBCCCC---GGGGGCSSCCEEECTTBCCCCCTTGGG
T ss_pred             EecCCccCc--H-------------hHHHHhhCCCCCEEEccCCCCcccc---HhhcCCCCCCEEECCCCCCcChHHhcc
Confidence            888876310  0             12246788999999999886 6542   257899999999999987422 11224


Q ss_pred             cccccEEEeecC
Q 039643          279 SNLLKRVAFLFC  290 (520)
Q Consensus       279 f~~L~~L~L~~c  290 (520)
                      +++|++|++.+.
T Consensus       180 l~~L~~L~l~~N  191 (197)
T 4ezg_A          180 FPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSCCEEEECBC
T ss_pred             CCCCCEEEeeCc
Confidence            678999999873

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.71  E-value=1.2e-08  Score=100.01  Aligned_cols=184  Identities=17%  Similarity=0.097  Sum_probs=125.7

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+|. .+..+++|++|+|++|.+..  +..+.++++|++|+|+++.+..- ....+.+++.
T Consensus        28 ~~l~~L~ls~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  101 (276)
T 2z62_A           28 FSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSS  101 (276)
T ss_dssp             TTCCEEECTTC-----CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTT
T ss_pred             CCccEEECCCC-----cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCcc
Confidence            57899988653     2334444 67778999999999987643  34678899999999999987321 1123578899


Q ss_pred             cceeeeeccCC--cceeccccccccceEEEecccCCC---CceeeeCCceeEEEecc-------ccccCCCCCcc----e
Q 039643          175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-------VIVVATCPNLK----K  238 (520)
Q Consensus       175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~----~  238 (520)
                      |+.|++.++..  +....+.++++|+.|+++++....   +...-..++|++|.+..       ...+..+++|+    +
T Consensus       102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred             ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence            99999998853  333346668999999999987532   22233568999999862       22344555666    7


Q ss_pred             EEecccccchhHHHHHHhCCcccceeecccccccc-ccc--cccccccEEEeec
Q 039643          239 LHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVK--FSSNLLKRVAFLF  289 (520)
Q Consensus       239 L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~--~~f~~L~~L~L~~  289 (520)
                      ++++++.++.. ....+ ...+|+.|+++++..-. +..  ..+++|++|++++
T Consensus       182 L~ls~n~l~~~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          182 LDLSLNPMNFI-QPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             EECCSSCCCEE-CTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             eecCCCccccc-Ccccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            88888776541 11222 34489999999887421 111  2357899999986

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.68  E-value=1.6e-07  Score=103.20  Aligned_cols=216  Identities=19%  Similarity=0.130  Sum_probs=119.5

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .+++.|++...     ....+|.   .+++|++|+|++|.+.. |.   .+++|++|+|+++.+..  +   -...+.|+
T Consensus        61 ~~L~~L~L~~N-----~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l---~~~l~~L~  124 (622)
T 3g06_A           61 AHITTLVIPDN-----NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--L---PALPSGLC  124 (622)
T ss_dssp             TTCSEEEECSC-----CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--C---CCCCTTCC
T ss_pred             CCCcEEEecCC-----CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--C---CCCCCCcC
Confidence            46777777654     1224555   35677777777776643 33   66777777777776522  0   01356666


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCC------------------CceeeeCCceeEEEeccc--ccc-CCCCC
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSS------------------ELESIVAPSLQQLTLVRV--IVV-ATCPN  235 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~------------------~~~~i~aP~L~~L~l~~~--~~~-~~l~~  235 (520)
                      .|++.+|. +..+... .++|+.|++++|....                  ..+....++|+.|.+...  ..+ ..+++
T Consensus       125 ~L~L~~N~-l~~lp~~-l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~  202 (622)
T 3g06_A          125 KLWIFGNQ-LTSLPVL-PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE  202 (622)
T ss_dssp             EEECCSSC-CSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             EEECCCCC-CCcCCCC-CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccch
Confidence            66666653 2212111 3556666665554210                  001112355666665421  111 23456


Q ss_pred             cceEEecccccchhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643          236 LKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       236 L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      |+.|+++++.++.     +-..+++|+.|.++++. +..++..+++|++|+++++ .+..+-...++|+.|+++++.+..
T Consensus       203 L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~  275 (622)
T 3g06_A          203 LYKLWAYNNRLTS-----LPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTR  275 (622)
T ss_dssp             CCEEECCSSCCSS-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCS
T ss_pred             hhEEECcCCcccc-----cCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCc
Confidence            6666666655542     11235778888888775 3333345678999999875 333222367889999999987765


Q ss_pred             cccccccC-CCcE-EEEeccccccCh
Q 039643          316 ISISASHQ-CPWN-VFFVHEHDVGDI  339 (520)
Q Consensus       316 ~~~~~l~~-~~L~-v~~~~~~~~g~~  339 (520)
                      + ...+.. ..++ +.+.++.+.+.+
T Consensus       276 l-p~~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          276 L-PESLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             C-CGGGGGSCTTCEEECCSCCCCHHH
T ss_pred             C-CHHHhhccccCEEEecCCCCCCcC
Confidence            4 122222 2243 556677777543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.66  E-value=2.1e-08  Score=96.99  Aligned_cols=156  Identities=17%  Similarity=0.094  Sum_probs=96.4

Q ss_pred             ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceec
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFS  190 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~  190 (520)
                      ...+|..+.  ++|+.|+|+++.+..  +..+.++++|++|+|+++.+.+ .....+.+++.|+.|+|.++...  ..-.
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  102 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGV  102 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhH
Confidence            345666654  588999999987643  3457788999999999887732 11223567889999999887521  1112


Q ss_pred             cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +.++++|+.|+++++....  +  .           ...+..+++|++|+++++.++. .....++++++|+.|+|+++.
T Consensus       103 ~~~l~~L~~L~L~~N~l~~--~--~-----------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          103 FDHLTQLDKLYLGGNQLKS--L--P-----------SGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCC--C--C-----------TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccCCCCEEEcCCCcCCC--c--C-----------hhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCc
Confidence            3457888888888876310  0  0           1124556777777777666543 122345667777777777765


Q ss_pred             ccc--c-cccccccccEEEeec
Q 039643          271 PLE--R-VKFSSNLLKRVAFLF  289 (520)
Q Consensus       271 ~l~--~-~~~~f~~L~~L~L~~  289 (520)
                      .-.  + .-..+++|++|++.+
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCccCHHHHhCCCCCCEEEeeC
Confidence            321  1 111345677777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.66  E-value=2.3e-08  Score=102.23  Aligned_cols=212  Identities=16%  Similarity=0.142  Sum_probs=123.4

Q ss_pred             CCceEEEEEecCCCCCcccccC-----cccccCC-CccEEEEeccccCC--CcccCC-----CCCCCEEEecceecC---
Q 039643           98 NGVKELHIVVESSPHESAYTLP-----QAIYSAK-LLTTLVLNGCRLDE--PLIAIN-----LNSLKNLSLQRVYAN---  161 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP-----~~l~~~~-sL~~L~L~~c~l~~--p~~~~~-----l~sLk~L~L~~v~~~---  161 (520)
                      +++++|++....     ....+     ..+..++ +|++|+|++|.+..  +..+..     +++|++|+|+++.++   
T Consensus        22 ~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           22 HGVTSLDLSLNN-----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             TTCCEEECTTSC-----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CCceEEEccCCC-----CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            569999997641     22233     4555677 89999999997743  223333     399999999999883   


Q ss_pred             hHHHHHHHhcC-CCcceeeeeccCCcc--eec----ccc-ccccceEEEecccCCCCce-e-----eeC-CceeEEEecc
Q 039643          162 EQMVHNLIAEC-CSLEDLSLRYTLGLK--FFS----VSK-AHKLKNMVIVDYSRSSELE-S-----IVA-PSLQQLTLVR  226 (520)
Q Consensus       162 ~~~l~~Lls~C-P~LE~L~L~~c~~l~--~l~----I~~-~~~Lk~L~I~~~~~~~~~~-~-----i~a-P~L~~L~l~~  226 (520)
                      ...+...+..+ +.|+.|+|++|.--.  .-.    +.. .++|++|+++++....... .     ... ++|++|.+..
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence            34566667777 899999999996211  101    111 2599999999987421110 1     122 3777777652


Q ss_pred             c-------c----ccCCC-CCcceEEecccccchh---HHHHHHhC-Ccccceeeccccccccc-------ccccccccc
Q 039643          227 V-------I----VVATC-PNLKKLHLSEIVLEDQ---EFHELISK-FPLLEDLSVSSSQPLER-------VKFSSNLLK  283 (520)
Q Consensus       227 ~-------~----~~~~l-~~L~~L~L~~~~~~~~---~~~~ll~~-l~~L~~L~L~~~~~l~~-------~~~~f~~L~  283 (520)
                      .       .    .+..+ ++|++|+++++.+++.   .+...+.. .++|+.|+|+++..-..       ......+|+
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~  256 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ  256 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence            1       0    12233 4777777777666542   12233333 35777777777653110       011235677


Q ss_pred             EEEeecCC---c----hh---HHhcCCCCccEeEecccCCC
Q 039643          284 RVAFLFCR---S----LR---AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       284 ~L~L~~c~---~----l~---~lL~~~P~L~~L~l~~~~~~  314 (520)
                      .|++++|.   .    ..   ..+...++|+.|+++++.+.
T Consensus       257 ~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            77776643   1    11   22334555666666655443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.65  E-value=1.2e-08  Score=101.95  Aligned_cols=209  Identities=17%  Similarity=0.115  Sum_probs=134.4

Q ss_pred             cHHHHHHHHHhCCceEEEEEecCCCCCcccccCccc--ccCCCccEEEEeccccCC--C----cccCCCCCCCEEEecce
Q 039643           87 LVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAI--YSAKLLTTLVLNGCRLDE--P----LIAINLNSLKNLSLQRV  158 (520)
Q Consensus        87 ~v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l--~~~~sL~~L~L~~c~l~~--p----~~~~~l~sLk~L~L~~v  158 (520)
                      .+..........++++|++....    .....|..+  ..+++|++|+|++|.+..  +    .....+++|++|+|+++
T Consensus        80 ~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           80 LLVGALRVLAYSRLKELTLEDLK----ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             HHHHHHHHHHHSCCCEEEEESCC----CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             HHHHHHHhcccCceeEEEeeCCE----eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            34455555555779999997741    233456666  678999999999987643  2    23357999999999999


Q ss_pred             ecChHHHHHHHhcCCCcceeeeeccCCcc------eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCC
Q 039643          159 YANEQMVHNLIAECCSLEDLSLRYTLGLK------FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVAT  232 (520)
Q Consensus       159 ~~~~~~l~~Lls~CP~LE~L~L~~c~~l~------~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~  232 (520)
                      .+.. .....+++++.|+.|+|+++....      ...+.++++|++|++++|....  ..    ..      ....+..
T Consensus       156 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~------~~~l~~~  222 (310)
T 4glp_A          156 HSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PT----GV------CAALAAA  222 (310)
T ss_dssp             SSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HH----HH------HHHHHHH
T ss_pred             Ccch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hH----HH------HHHHHhc
Confidence            8732 122345688999999999996322      1223457899999999886310  00    00      0001346


Q ss_pred             CCCcceEEecccccchhHHHHHHhCC---cccceeeccccccccccc-cccccccEEEeecCCchh-HHhcCCCCccEeE
Q 039643          233 CPNLKKLHLSEIVLEDQEFHELISKF---PLLEDLSVSSSQPLERVK-FSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFT  307 (520)
Q Consensus       233 l~~L~~L~L~~~~~~~~~~~~ll~~l---~~L~~L~L~~~~~l~~~~-~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~  307 (520)
                      +++|++|+++++.+++..+ ..+..+   ++|+.|.++++..- .++ ..+++|++|+|+++.-.. ..+..+|+|+.|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred             CCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence            6788888888777654211 112333   68888888877642 221 123688888888753322 3357789999999


Q ss_pred             ecccCCC
Q 039643          308 FESVRIP  314 (520)
Q Consensus       308 l~~~~~~  314 (520)
                      ++++.+.
T Consensus       301 L~~N~l~  307 (310)
T 4glp_A          301 LDGNPFL  307 (310)
T ss_dssp             CSSTTTS
T ss_pred             CcCCCCC
Confidence            9988653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.62  E-value=5.1e-08  Score=95.36  Aligned_cols=145  Identities=11%  Similarity=0.055  Sum_probs=87.1

Q ss_pred             ccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceE
Q 039643          121 AIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNM  200 (520)
Q Consensus       121 ~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L  200 (520)
                      .+..+++|++|++++|.+...+.+..+++|+.|+|+++.+.+-.  . +.+++.|+.|+++++.--..-.+.. ++|+.|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L  111 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL  111 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEE
T ss_pred             chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEE
Confidence            34557788888888887644346678888888888888773211  1 6778888888888875211112222 778888


Q ss_pred             EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccc-ccccc
Q 039643          201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLER-VKFSS  279 (520)
Q Consensus       201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~-~~~~f  279 (520)
                      +++++....  +               ..+..+++|+.|+++++.+++-   ..++.+++|+.|.++++..-.. .-..+
T Consensus       112 ~L~~N~l~~--~---------------~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l~~l  171 (263)
T 1xeu_A          112 FLDNNELRD--T---------------DSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGLTRL  171 (263)
T ss_dssp             ECCSSCCSB--S---------------GGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTSTTC
T ss_pred             EccCCccCC--C---------------hhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHhccC
Confidence            888775311  0               1245566666666666555442   1355666666666666553111 11134


Q ss_pred             ccccEEEeec
Q 039643          280 NLLKRVAFLF  289 (520)
Q Consensus       280 ~~L~~L~L~~  289 (520)
                      ++|+.|++.+
T Consensus       172 ~~L~~L~l~~  181 (263)
T 1xeu_A          172 KKVNWIDLTG  181 (263)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCCCEEeCCC
Confidence            5566666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.61  E-value=2.4e-07  Score=97.89  Aligned_cols=176  Identities=16%  Similarity=0.056  Sum_probs=92.7

Q ss_pred             CCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecc
Q 039643          126 KLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDY  205 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~  205 (520)
                      ++|++|+|++|.+...+.+.++++|++|+++++.+.+  ++   ...+.|+.|++.+|.....-.+.++++|+.|+++++
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            4566666666654321245666666666666665521  11   112466666666653211113445667777777666


Q ss_pred             cCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccccccc
Q 039643          206 SRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSN  280 (520)
Q Consensus       206 ~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~  280 (520)
                      ...  .+.-..++|++|.+..     ...+..+++|++|+++++.+++     +-...++|+.|.++++.. ...+....
T Consensus       206 ~l~--~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~l-~~l~~~~~  277 (454)
T 1jl5_A          206 SLK--KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYL-TDLPELPQ  277 (454)
T ss_dssp             CCS--SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSCC-SCCCCCCT
T ss_pred             cCC--cCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCcc-cccCcccC
Confidence            531  1111224677776642     1135566777777777665543     112346777777776652 22222345


Q ss_pred             cccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643          281 LLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       281 ~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      +|++|+++++. +..+-...++|+.|+++++.+..
T Consensus       278 ~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~  311 (454)
T 1jl5_A          278 SLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRS  311 (454)
T ss_dssp             TCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSE
T ss_pred             cCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCc
Confidence            67777777643 22111123577888877776544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.57  E-value=9.2e-08  Score=92.48  Aligned_cols=169  Identities=15%  Similarity=0.051  Sum_probs=110.4

Q ss_pred             CCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEE
Q 039643          126 KLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVI  202 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I  202 (520)
                      .+.+++++++..+.. |...  .++|+.|+|.++.+..- ....+.+++.|+.|+|+++..  ...-.+.++++|+.|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            567888888877643 4433  37899999999887321 112356789999999998852  21222445788888888


Q ss_pred             ecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-cccc
Q 039643          203 VDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSS  279 (520)
Q Consensus       203 ~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f  279 (520)
                      +++...  .  +           ....+..+++|++|+++++.++. .....+.++++|+.|.|+++..-.  +. -..+
T Consensus        91 ~~n~l~--~--~-----------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  154 (251)
T 3m19_A           91 ANNQLA--S--L-----------PLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL  154 (251)
T ss_dssp             TTSCCC--C--C-----------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCccc--c--c-----------ChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence            887631  0  0           01235678899999998887753 233456788999999998876421  11 1134


Q ss_pred             ccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643          280 NLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       280 ~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      ++|++|+|+++.-..   ..+..+++|+.|++.++.+
T Consensus       155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            678888887643211   3456677888888777754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.50  E-value=1.5e-07  Score=95.66  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=23.6

Q ss_pred             HHhCCcccceeecccccccccc-ccccccccEEEeecCCchh--HHhcCCCCccEeEe
Q 039643          254 LISKFPLLEDLSVSSSQPLERV-KFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTF  308 (520)
Q Consensus       254 ll~~l~~L~~L~L~~~~~l~~~-~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l  308 (520)
                      .++++++|+.|+++++.. ..+ ...|.+|++|.+.++.++.  ..+.++++|+.+++
T Consensus       197 ~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             TTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             HhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence            345555555555555542 111 1124455555554443332  11233444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.43  E-value=5.4e-07  Score=97.91  Aligned_cols=151  Identities=12%  Similarity=0.061  Sum_probs=79.7

Q ss_pred             cCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--c-cccccccccEEEeecCCchh----HHhcCCCC
Q 039643          230 VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--R-VKFSSNLLKRVAFLFCRSLR----AVDLDTPN  302 (520)
Q Consensus       230 ~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~-~~~~f~~L~~L~L~~c~~l~----~lL~~~P~  302 (520)
                      +..+++|+.+++..+..........+.++++++.+.++.+....  + ......+|+.|.+.++....    ..+..+++
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~  495 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  495 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence            45566677666654332221122345566777777776655311  1 11234567777777654322    34566778


Q ss_pred             ccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccc
Q 039643          303 LLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKN  380 (520)
Q Consensus       303 L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~  380 (520)
                      |+.|+++++.+..+....+.. ..|+ +.+.++.+.+-+       ...+++++.|+.|.+.. +...+..+..+..+| 
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-------~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~-  566 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-------TFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFP-  566 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-------CGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCC-
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-------hhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhh-
Confidence            888888877665431111111 1243 445555555432       23456778888888874 333444444333111 


Q ss_pred             cCCCCcccccceEEE
Q 039643          381 RSPSLPFQVGNMRLI  395 (520)
Q Consensus       381 asp~l~~~l~~L~l~  395 (520)
                           + +|++|.+.
T Consensus       567 -----~-~L~~L~L~  575 (635)
T 4g8a_A          567 -----S-SLAFLNLT  575 (635)
T ss_dssp             -----T-TCCEEECT
T ss_pred             -----C-cCCEEEee
Confidence                 3 67777766

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.42  E-value=1.4e-07  Score=92.28  Aligned_cols=166  Identities=11%  Similarity=0.027  Sum_probs=116.3

Q ss_pred             CCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEec
Q 039643          125 AKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVD  204 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~  204 (520)
                      ++.++.+.++++.+...+....+++|++|+++++.+..  ++ -+..++.|+.|++.+|.--....+.++++|+.|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence            34566666776665432356788999999999998732  11 3678899999999988522111256689999999998


Q ss_pred             ccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-cccccccccc
Q 039643          205 YSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLK  283 (520)
Q Consensus       205 ~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~  283 (520)
                      +....      .|           .+.. ++|+.|+++++.+++.   ..+.++++|+.|.++++..-. +.-..+++|+
T Consensus        95 N~l~~------l~-----------~~~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~  153 (263)
T 1xeu_A           95 NRLKN------LN-----------GIPS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE  153 (263)
T ss_dssp             SCCSC------CT-----------TCCC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCC
T ss_pred             CccCC------cC-----------cccc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCChHHccCCCCC
Confidence            86311      01           1222 7889999998887652   247899999999999987421 2122467899


Q ss_pred             EEEeecCCchh-HHhcCCCCccEeEecccCCC
Q 039643          284 RVAFLFCRSLR-AVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       284 ~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~  314 (520)
                      +|+++++.-.. ..+..+++|+.|+++++.+.
T Consensus       154 ~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          154 VLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             EEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred             EEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence            99998854322 55678999999999988654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.41  E-value=2.6e-07  Score=83.39  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=90.4

Q ss_pred             CCccEEEEeccccC---CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceE
Q 039643          126 KLLTTLVLNGCRLD---EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNM  200 (520)
Q Consensus       126 ~sL~~L~L~~c~l~---~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L  200 (520)
                      ++|++|+|++|.+.   .|..+..+++|+.|+|.++.+.+-   ..+..++.|+.|++++|....  ...+.++++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            68999999998775   366668889999999998887432   346678888888888886322  1112237788888


Q ss_pred             EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecccccc
Q 039643          201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      +++++....  +    |        ....+..+++|+.|+++++.++..  .....+..+++|+.|++..+..
T Consensus       101 ~Ls~N~l~~--~----~--------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKD--I----S--------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCS--S----G--------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCc--c----h--------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            888876311  0    0        012457788999999988877642  1235788899999999988763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.40  E-value=4e-07  Score=85.15  Aligned_cols=87  Identities=22%  Similarity=0.177  Sum_probs=48.0

Q ss_pred             ccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceeccc
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVS  192 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~  192 (520)
                      .+|..+  .++|++|+|+++.+.. ++ .+..+++|++|+|.++.+.. .....+.+++.|+.|+|.++.-.  ..-.+.
T Consensus        21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   97 (208)
T 2o6s_A           21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD   97 (208)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence            344443  2467777777765533 22 34567777777777766531 11123456677777777766421  111133


Q ss_pred             cccccceEEEeccc
Q 039643          193 KAHKLKNMVIVDYS  206 (520)
Q Consensus       193 ~~~~Lk~L~I~~~~  206 (520)
                      ++++|+.|+++++.
T Consensus        98 ~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           98 KLTQLKELALNTNQ  111 (208)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CccCCCEEEcCCCc
Confidence            46677777776665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.35  E-value=1e-06  Score=95.80  Aligned_cols=176  Identities=16%  Similarity=0.069  Sum_probs=91.7

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .+++.|++...     ....+|..++  ++|++|+|++|.+...+  ..+++|++|+|+++.++.  ++. +.  ..|+.
T Consensus        59 ~~L~~L~Ls~n-----~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~  124 (571)
T 3cvr_A           59 NQFSELQLNRL-----NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKH  124 (571)
T ss_dssp             TTCSEEECCSS-----CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCE
T ss_pred             CCccEEEeCCC-----CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCE
Confidence            47777777653     1223666554  67888888887664312  457788888888777632  222 22  27777


Q ss_pred             eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhC
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK  257 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~  257 (520)
                      |+|+++.. ..+.- .+++|+.|+++++...  .+    |             ..+++|++|++++|.++.  +.. +. 
T Consensus       125 L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~l~--~l----p-------------~~l~~L~~L~Ls~N~L~~--lp~-l~-  179 (571)
T 3cvr_A          125 LDVDNNQL-TMLPE-LPALLEYINADNNQLT--ML----P-------------ELPTSLEVLSVRNNQLTF--LPE-LP-  179 (571)
T ss_dssp             EECCSSCC-SCCCC-CCTTCCEEECCSSCCS--CC----C-------------CCCTTCCEEECCSSCCSC--CCC-CC-
T ss_pred             EECCCCcC-CCCCC-cCccccEEeCCCCccC--cC----C-------------CcCCCcCEEECCCCCCCC--cch-hh-
Confidence            77777642 11111 3567777777766531  00    0             034566666666655543  111 22 


Q ss_pred             Ccccceeeccccccccccccccccc-------cEEEeecCCch--hHHhcCCCCccEeEecccCCC
Q 039643          258 FPLLEDLSVSSSQPLERVKFSSNLL-------KRVAFLFCRSL--RAVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       258 l~~L~~L~L~~~~~l~~~~~~f~~L-------~~L~L~~c~~l--~~lL~~~P~L~~L~l~~~~~~  314 (520)
                       ++|+.|.|+++.. ..++....+|       +.|+|+++.-.  ..-+..+|+|+.|+++++.+.
T Consensus       180 -~~L~~L~Ls~N~L-~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          180 -ESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             -TTCCEEECCSSCC-SSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             -CCCCEEECcCCCC-CchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence             5666666666542 1111111144       55555543211  122233566666666655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.34  E-value=8.3e-07  Score=80.03  Aligned_cols=133  Identities=18%  Similarity=0.045  Sum_probs=94.7

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|++....   .....+|..+..+++|++|+|++|.+.....+..+++|++|+|+++.+... ++..+..+|.|+.
T Consensus        24 ~~L~~L~l~~n~---l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCK---SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCB---CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCC---CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCE
Confidence            579999997641   111368888888999999999999775446788999999999999998432 5566778999999


Q ss_pred             eeeeccCC--cce-eccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEeccccc
Q 039643          178 LSLRYTLG--LKF-FSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVL  246 (520)
Q Consensus       178 L~L~~c~~--l~~-l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~  246 (520)
                      |++.+|.-  +.. -.+.++++|+.|+++++.....      |..      ....+..+++|+.|++..+..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~------~~~------~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL------NDY------RESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS------TTH------HHHHHTTCSSCCEETTEETTS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch------HHH------HHHHHHhCccCcEecCCCCCh
Confidence            99999952  211 2345688999999998863110      000      001356677788887776544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.33  E-value=1.4e-06  Score=94.59  Aligned_cols=194  Identities=13%  Similarity=0.036  Sum_probs=101.2

Q ss_pred             CCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEEecccCC--C-CceeeeCCce
Q 039643          145 INLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRS--S-ELESIVAPSL  219 (520)
Q Consensus       145 ~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~--~-~~~~i~aP~L  219 (520)
                      ..+++|+.|++..+.+ ...........++.|+.|++..+.... ...+.++++|+.+++..+...  . .......+++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            3455666666655543 111112223345566666655543211 111223566666666554321  0 0112234566


Q ss_pred             eEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccc-cccccccEEEeec
Q 039643          220 QQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVK-FSSNLLKRVAFLF  289 (520)
Q Consensus       220 ~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~  289 (520)
                      +.+.+..       +..+..+++|+.++++++..........++.+++|+.|+|++|..-.  +.. ..+++|+.|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            6666541       22345677888888876654332233456778888888888876421  111 1346788888877


Q ss_pred             CCchh---HHhcCCCCccEeEecccCCCCcccccccC--CCcE-EEEeccccccC
Q 039643          290 CRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ--CPWN-VFFVHEHDVGD  338 (520)
Q Consensus       290 c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~--~~L~-v~~~~~~~~g~  338 (520)
                      +.-..   ..+..+++|+.|+++++.+..+....+..  .+++ +.+..+.+..+
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            43211   45677888888888888766431111211  1243 44555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.32  E-value=4.6e-07  Score=86.51  Aligned_cols=136  Identities=16%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS  190 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~  190 (520)
                      ...+|..+.  ++|++|+|+++.+..  |..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|+++.-  +..-.
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCccChhH
Confidence            445666553  788899999887643  4557788889999998887621 1112346678888888887742  11112


Q ss_pred             cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +.++++|+.|+++++...    .+            +..+..+++|+.|+++++.++. .....+.++++|+.|.+.+++
T Consensus       108 ~~~l~~L~~L~Ls~N~l~----~l------------p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLT----EL------------PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTCTTCCEEECCSSCCC----SC------------CTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSC
T ss_pred             hCcchhhCeEeccCCccc----cc------------CcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCC
Confidence            334677777777776531    00            1234566677777777666543 122345666677777766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.30  E-value=5.8e-07  Score=85.30  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=77.2

Q ss_pred             ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS  190 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~  190 (520)
                      ...+|..+.  ++|+.|+|+++.+..  +..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|+++.-  +..-.
T Consensus        23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~   99 (220)
T 2v9t_B           23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITELPKSL   99 (220)
T ss_dssp             CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence            345565543  578888888876643  3356778888888888876632 1112245667777777777642  11111


Q ss_pred             cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +.++++|+.|+++++....    +           .+..+..+++|+.|+++++.++.. ....+..+++|+.|.|++++
T Consensus       100 f~~l~~L~~L~L~~N~l~~----~-----------~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANKINC----L-----------RVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCC----C-----------CTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCCCCCCE----e-----------CHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence            2346677777777665210    0           012345566666666666555431 12234556666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.29  E-value=2.7e-07  Score=81.57  Aligned_cols=125  Identities=17%  Similarity=0.092  Sum_probs=81.0

Q ss_pred             CCccEEEEeccccC---CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceE
Q 039643          126 KLLTTLVLNGCRLD---EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNM  200 (520)
Q Consensus       126 ~sL~~L~L~~c~l~---~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L  200 (520)
                      ++|++|++++|.+.   .|..+..+++|+.|+|+++.+.+-   ..++.++.|+.|++++|.-..  .-.+.++++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            67899999998775   366678889999999998887432   345677888888888775221  1112236777777


Q ss_pred             EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecc
Q 039643          201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVS  267 (520)
Q Consensus       201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~  267 (520)
                      +++++....  .  .          .+..+..+++|++|+++++.+++.  .....+..+++|+.|+++
T Consensus        94 ~ls~N~i~~--~--~----------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKD--L--S----------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCS--H--H----------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCC--h--H----------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777765310  0  0          012356677788888877766542  122466777777777764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.25  E-value=7e-07  Score=83.49  Aligned_cols=144  Identities=20%  Similarity=0.191  Sum_probs=98.0

Q ss_pred             CCceEEEEEecCCCCCcccccCcc-cccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQA-IYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~-l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+|.. +..+++|++|+|+++.+.. ++ .+..+++|++|+|+++.+.. .....+.+++.
T Consensus        28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~  101 (208)
T 2o6s_A           28 AQTTYLDLETN-----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQ  101 (208)
T ss_dssp             TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCcEEEcCCC-----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccC
Confidence            47888988764     12345554 4578999999999987744 33 35789999999999998732 11223578899


Q ss_pred             cceeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHH
Q 039643          175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFH  252 (520)
Q Consensus       175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~  252 (520)
                      |+.|++.++.-.  ..-.+.++++|+.|+++++....    +.           ...+..+++|+.++++++.+.     
T Consensus       102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~-----------~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS----VP-----------DGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CC-----------TTTTTTCTTCCEEECCSCCBC-----
T ss_pred             CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce----eC-----------HHHhccCCCccEEEecCCCee-----
Confidence            999999988521  11124457899999999886311    00           112456777888888776554     


Q ss_pred             HHHhCCcccceeeccccc
Q 039643          253 ELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       253 ~ll~~l~~L~~L~L~~~~  270 (520)
                         ..+++|+.|.++.+.
T Consensus       162 ---~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          162 ---CTCPGIRYLSEWINK  176 (208)
T ss_dssp             ---CCTTTTHHHHHHHHH
T ss_pred             ---cCCCCHHHHHHHHHh
Confidence               346677777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.24  E-value=1.3e-06  Score=80.03  Aligned_cols=94  Identities=10%  Similarity=0.058  Sum_probs=71.8

Q ss_pred             cccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee-cChHHHHHHHhc---CCCcceeeeeccCCcc
Q 039643          114 SAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY-ANEQMVHNLIAE---CCSLEDLSLRYTLGLK  187 (520)
Q Consensus       114 ~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~---CP~LE~L~L~~c~~l~  187 (520)
                      ....||......-.|++|+|++|.+..  .....++++|++|+|++|. +++..+..+-..   |+.||+|+|++|..++
T Consensus        49 ~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            345677654445689999999997633  3446789999999999996 599999988763   7899999999997654


Q ss_pred             e---eccccccccceEEEecccC
Q 039643          188 F---FSVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       188 ~---l~I~~~~~Lk~L~I~~~~~  207 (520)
                      .   ..+..+++|++|++++|..
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTT
T ss_pred             HHHHHHHhcCCCCCEEECCCCCC
Confidence            3   1234588999999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.22  E-value=9.3e-07  Score=78.01  Aligned_cols=106  Identities=21%  Similarity=0.132  Sum_probs=81.8

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|++....   .....+|..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+. ++..+.+++.|+.
T Consensus        17 ~~l~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSR---SNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCB---CBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred             ccCeEEEccCCc---CChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence            568888886641   111367888888999999999999775446788999999999999998432 5667778999999


Q ss_pred             eeeeccCCcc--e-eccccccccceEEEecccC
Q 039643          178 LSLRYTLGLK--F-FSVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       178 L~L~~c~~l~--~-l~I~~~~~Lk~L~I~~~~~  207 (520)
                      |++++|.-..  . -.+.++++|+.|+++++..
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            9999986322  1 3355689999999999863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.17  E-value=1.4e-06  Score=79.26  Aligned_cols=132  Identities=12%  Similarity=0.025  Sum_probs=80.3

Q ss_pred             cccCCCccEEEEeccccCCCcccCC-CCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--c-ccccccc
Q 039643          122 IYSAKLLTTLVLNGCRLDEPLIAIN-LNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--S-VSKAHKL  197 (520)
Q Consensus       122 l~~~~sL~~L~L~~c~l~~p~~~~~-l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~-I~~~~~L  197 (520)
                      +..+.+|++|+|++|.+...+.... .++|+.|+|+++.+.+-   .-+.+++.|+.|+++++.- ..+  . +.++++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence            4456788888888876643223333 34888888888776431   2356677777887777752 211  1 2346777


Q ss_pred             ceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecccccc
Q 039643          198 KNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       198 k~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      +.|+++++....      .|.        ...+..+++|+.++++++.++..  .-...+..+++|+.|+++.+..
T Consensus        91 ~~L~L~~N~i~~------~~~--------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLVE------LGD--------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCCC------GGG--------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCCc------chh--------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            777777775310      010        01356677888888877766431  1223577788888888877653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=3.4e-06  Score=86.43  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             HHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCCCCce-e---eeCCceeEEEe
Q 039643          164 MVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELE-S---IVAPSLQQLTL  224 (520)
Q Consensus       164 ~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~-~---i~aP~L~~L~l  224 (520)
                      .+..++..+|.|+.|.|.++.++....+. +++|++|++..|....... .   ...|+|++|.+
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL  226 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence            46678899999999999887544322344 7899999998776321111 1   13566666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.15  E-value=1.3e-07  Score=88.13  Aligned_cols=134  Identities=19%  Similarity=0.214  Sum_probs=90.2

Q ss_pred             cccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceecccccc
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAH  195 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~  195 (520)
                      ..+|..+..+++|++|+|++|.+...+.+..+++|+.|+|+++.+.  .++..+..+|.|+.|++.+|.-...-.+.+++
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~  115 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV  115 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence            3456688888999999999987744237778899999999988874  23345556688899988888521111344577


Q ss_pred             ccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh---------HHHHHHhCCcccceee
Q 039643          196 KLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ---------EFHELISKFPLLEDLS  265 (520)
Q Consensus       196 ~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~---------~~~~ll~~l~~L~~L~  265 (520)
                      +|+.|+++++....  +    |        ....+..+++|++++++++.+++.         .....+..+++|+.|+
T Consensus       116 ~L~~L~l~~N~i~~--~----~--------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          116 NLRVLYMSNNKITN--W----G--------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCC--H----H--------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCEEECCCCcCCc--h----h--------HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            88888888776310  0    0        001356788888888887766432         2234577888888876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.14  E-value=9.4e-07  Score=90.24  Aligned_cols=87  Identities=18%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             ccCcccccCCCccEEEEeccccCC-C-cccC-CCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eecc
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE-P-LIAI-NLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSV  191 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~-~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I  191 (520)
                      .+|..+.  +.++.|+|+++.+.. + ..+. ++++|++|+|+++.+..- ....+.+++.|+.|+|+++.--.  .-.+
T Consensus        32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  108 (361)
T 2xot_A           32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTLDEFLF  108 (361)
T ss_dssp             SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence            4555443  346677777765532 2 2233 677777777776665210 01124556777777777664211  1123


Q ss_pred             ccccccceEEEeccc
Q 039643          192 SKAHKLKNMVIVDYS  206 (520)
Q Consensus       192 ~~~~~Lk~L~I~~~~  206 (520)
                      .++++|+.|+++++.
T Consensus       109 ~~l~~L~~L~L~~N~  123 (361)
T 2xot_A          109 SDLQALEVLLLYNNH  123 (361)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             CCCcCCCEEECCCCc
Confidence            346677777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.14  E-value=1.5e-06  Score=82.31  Aligned_cols=136  Identities=11%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             cccCcccccCCCccEEEEeccccCC--C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDE--P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS  190 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~--p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~  190 (520)
                      ..+|..+.  ..+++|+|+++.+..  + ..+..+++|++|+|+++.+.. .....+.+++.|+.|+|+++..  +..-.
T Consensus        24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  100 (220)
T 2v70_A           24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLENVQHKM  100 (220)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred             ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence            34666543  356788888876633  2 235678888888888776632 0111245667777777777642  11112


Q ss_pred             cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      +.++++|++|+++++....    +           .+..+..+++|+.|+++++.++.. ....+..+++|+.|.+++++
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~----~-----------~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITC----V-----------GNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCC----B-----------CTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             hcCCcCCCEEECCCCcCCe----E-----------CHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcC
Confidence            3446777777777665310    0           012345566666666666555431 12334556666666665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.02  E-value=1.3e-05  Score=81.40  Aligned_cols=182  Identities=10%  Similarity=0.096  Sum_probs=99.1

Q ss_pred             ccccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee---
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF---  189 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l---  189 (520)
                      ...+|..+.  +++++|+|+++.+.. |+ .+.++++|++|+|+++.+.+..-...+.+++.|.++.+.++..+..+   
T Consensus        21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            346777663  589999999987744 44 47889999999999887521111123456788777666665555443   


Q ss_pred             ccccccccceEEEecccCCC--CceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCC-cccceeec
Q 039643          190 SVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKF-PLLEDLSV  266 (520)
Q Consensus       190 ~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l-~~L~~L~L  266 (520)
                      .+.++++|+.|+++++....  +.......++..+.+..                .+.++. .....+.++ ..++.|.+
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~----------------~~~i~~-l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD----------------NINIHT-IERNSFVGLSFESVILWL  161 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES----------------CTTCCE-ECTTSSTTSBSSCEEEEC
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhcc----------------cccccc-ccccchhhcchhhhhhcc
Confidence            24457899999998886321  11112223333333321                111111 000112222 24555555


Q ss_pred             cccccc--cccccccccccEEEeecCCchh----HHhcCCCCccEeEecccCCCC
Q 039643          267 SSSQPL--ERVKFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       267 ~~~~~l--~~~~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      +++..-  .+......+|++|.+.+++.+.    ..+..+++|+.|+++++.+..
T Consensus       162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence            554421  1111122356666665544433    345667788888887776544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.01  E-value=6.5e-06  Score=77.96  Aligned_cols=130  Identities=20%  Similarity=0.212  Sum_probs=93.0

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+|+ .+..+++|++|+|+++.+..  |..+.++++|++|+|+++.+.. .....+.+++.
T Consensus        32 ~~l~~L~l~~n-----~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~  105 (220)
T 2v9t_B           32 ETITEIRLEQN-----TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFS  105 (220)
T ss_dssp             TTCCEEECCSS-----CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             cCCCEEECCCC-----cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCC
Confidence            57888988664     2334554 56678999999999997743  5678999999999999998741 11223567899


Q ss_pred             cceeeeeccCC--cceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643          175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED  248 (520)
Q Consensus       175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~  248 (520)
                      |+.|+|.++.-  +..-.+.++++|+.|+++++....    +.           ...+..+++|+.+++++|.+..
T Consensus       106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~-----------~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT----IA-----------KGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CC-----------TTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE----EC-----------HHHHhCCCCCCEEEeCCCCcCC
Confidence            99999999852  222235568899999999886311    00           1235678899999998876643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.00  E-value=2.2e-06  Score=95.84  Aligned_cols=114  Identities=18%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             cCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eecccccc
Q 039643          118 LPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAH  195 (520)
Q Consensus       118 LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~  195 (520)
                      .|..+..++.|+.|+|++|.+ ..|.....+++|++|+|+++.+.  .++.-+.+++.|+.|+|++|..-. .-.+.+++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~  293 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF  293 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence            355666778888888888765 34666667888888888887764  233335677888888888775211 22345577


Q ss_pred             ccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh
Q 039643          196 KLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ  249 (520)
Q Consensus       196 ~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~  249 (520)
                      +|+.|+++++...    .            -+..+.++++|+.|+|++|.+++.
T Consensus       294 ~L~~L~L~~N~l~----~------------lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          294 QLKYFYFFDNMVT----T------------LPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             TCSEEECCSSCCC----C------------CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CCCEEECCCCCCC----c------------cChhhhcCCCccEEeCCCCccCCC
Confidence            7888888777531    0            123478899999999999888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.98  E-value=4.7e-06  Score=85.02  Aligned_cols=82  Identities=16%  Similarity=0.120  Sum_probs=35.3

Q ss_pred             cCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccce
Q 039643          124 SAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKN  199 (520)
Q Consensus       124 ~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~  199 (520)
                      .+++|++|+|+++.+..  +..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|.++....  .-.+.++++|+.
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence            44555555555554422  2234455555555555554421 001123344555555555543111  112233455555


Q ss_pred             EEEeccc
Q 039643          200 MVIVDYS  206 (520)
Q Consensus       200 L~I~~~~  206 (520)
                      |+++++.
T Consensus       141 L~L~~N~  147 (361)
T 2xot_A          141 LYLSQNQ  147 (361)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            5555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.95  E-value=3.5e-05  Score=78.80  Aligned_cols=159  Identities=21%  Similarity=0.228  Sum_probs=87.2

Q ss_pred             CCceEEEEEecCCCC-C----cccccCcccccCCCccEEEEecc-ccCCCcccCCCCCCCEEEecceecChHHHHHHHh-
Q 039643           98 NGVKELHIVVESSPH-E----SAYTLPQAIYSAKLLTTLVLNGC-RLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIA-  170 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~-~----~~~~LP~~l~~~~sL~~L~L~~c-~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls-  170 (520)
                      .++++|.+....... .    ....++..+-.+++|+.|.|+++ .+..++  ...++|++|.|..+.+....+..+.. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHc
Confidence            688888774321000 0    01134555566788888888876 344433  24788888888877776666666643 


Q ss_pred             cCCCcceeeeeccC---C----cce----eccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceE
Q 039643          171 ECCSLEDLSLRYTL---G----LKF----FSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKL  239 (520)
Q Consensus       171 ~CP~LE~L~L~~c~---~----l~~----l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L  239 (520)
                      .+|+|+.|+|..+.   +    +..    +....+|+|+.|.+.+|........    .        ......+++|++|
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~----~--------la~a~~~~~L~~L  284 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE----M--------FLESDILPQLETM  284 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH----H--------HHHCSSGGGCSEE
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH----H--------HHhCccCCCCCEE
Confidence            68888888875321   1    110    1111256666666665542100000    0        0001246677777


Q ss_pred             EecccccchhHHHHHH---hCCcccceeeccccc
Q 039643          240 HLSEIVLEDQEFHELI---SKFPLLEDLSVSSSQ  270 (520)
Q Consensus       240 ~L~~~~~~~~~~~~ll---~~l~~L~~L~L~~~~  270 (520)
                      +|+.+.+++.....+.   ..+++|+.|+|+.|.
T Consensus       285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             ECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            7776666654433333   345667777766554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.93  E-value=1.4e-05  Score=75.68  Aligned_cols=130  Identities=13%  Similarity=0.071  Sum_probs=91.9

Q ss_pred             CCceEEEEEecCCCCCccccc-Cc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643           98 NGVKELHIVVESSPHESAYTL-PQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECC  173 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~L-P~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP  173 (520)
                      ..+++|++...     ....+ |. .+..+++|++|+|+++.+..  +..+.++++|++|+|+++.+.. .....+.+++
T Consensus        32 ~~~~~L~L~~N-----~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~  105 (220)
T 2v70_A           32 QYTAELRLNNN-----EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLE  105 (220)
T ss_dssp             TTCSEEECCSS-----CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCS
T ss_pred             CCCCEEEcCCC-----cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCc
Confidence            45678887664     22333 33 35678999999999997743  3468899999999999998732 1123467899


Q ss_pred             CcceeeeeccCC--cceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643          174 SLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED  248 (520)
Q Consensus       174 ~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~  248 (520)
                      .|+.|+|+++.-  +..-.+.++++|+.|+++++....    +           .+..+..+++|+.++++++.+.+
T Consensus       106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~-----------~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT----V-----------APGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC----B-----------CTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE----E-----------CHHHhcCCCCCCEEEecCcCCcC
Confidence            999999999863  222335568899999999886311    0           12346778999999999877654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.87  E-value=1.1e-05  Score=87.50  Aligned_cols=134  Identities=14%  Similarity=0.118  Sum_probs=82.4

Q ss_pred             cCcccccCCCccEEE-EeccccC-CC--------cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc
Q 039643          118 LPQAIYSAKLLTTLV-LNGCRLD-EP--------LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK  187 (520)
Q Consensus       118 LP~~l~~~~sL~~L~-L~~c~l~-~p--------~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~  187 (520)
                      +|..+..+++|+.|+ ++.+.+. .+        -.......|+.|+|+++.+..  ++. +..++.|+.|+|+++.--.
T Consensus       401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~  477 (567)
T 1dce_A          401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRA  477 (567)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCC
T ss_pred             CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccc
Confidence            455566667777777 3332110 00        000112358888888887742  333 6778888888888875211


Q ss_pred             -eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643          188 -FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV  266 (520)
Q Consensus       188 -~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L  266 (520)
                       +-.+.++++|+.|+++++....    +            + .+..+++|+.|++++|.+++......++++++|+.|.|
T Consensus       478 lp~~~~~l~~L~~L~Ls~N~l~~----l------------p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          478 LPPALAALRCLEVLQASDNALEN----V------------D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCC----C------------G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cchhhhcCCCCCEEECCCCCCCC----C------------c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence             1245567888888888876310    0            1 35677888888888777654211345677888888888


Q ss_pred             ccccc
Q 039643          267 SSSQP  271 (520)
Q Consensus       267 ~~~~~  271 (520)
                      +++..
T Consensus       541 ~~N~l  545 (567)
T 1dce_A          541 QGNSL  545 (567)
T ss_dssp             TTSGG
T ss_pred             cCCcC
Confidence            87764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.86  E-value=3.1e-05  Score=73.60  Aligned_cols=131  Identities=15%  Similarity=0.054  Sum_probs=92.3

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      .+++.|++....    .....|..+..+++|++|+|+++.+.. | ..+.++++|+.|+|+++.+.. .....+..++.|
T Consensus        40 ~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQ----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCCEEEcCCCc----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhh
Confidence            678999987641    122235667788999999999997744 4 346899999999999998732 112235678999


Q ss_pred             ceeeeeccCCcc-eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643          176 EDLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED  248 (520)
Q Consensus       176 E~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~  248 (520)
                      +.|+|.++.-.. .-.+.++++|+.|+++++...    .+.           ...+..+++|+.+++.++.+.+
T Consensus       115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~----~~~-----------~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLK----SIP-----------HGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC----CCC-----------TTTTTTCTTCCEEECTTSCBCT
T ss_pred             CeEeccCCcccccCcccccCCCCCEEECCCCcCC----ccC-----------HHHHhCCCCCCEEEeeCCCccC
Confidence            999999986321 123455899999999988631    010           1235678899999998877653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.80  E-value=3.1e-05  Score=84.04  Aligned_cols=149  Identities=15%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      .+++.|++...     ....+|   ..+++|++|+|++|.+.. |. +.+  +|+.|+|+++.+..  ++.   .++.|+
T Consensus        80 ~~L~~L~Ls~N-----~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~  143 (571)
T 3cvr_A           80 PQITVLEITQN-----ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLE  143 (571)
T ss_dssp             TTCSEEECCSS-----CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCC
T ss_pred             CCCCEEECcCC-----CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC--CCC---cCcccc
Confidence            56888988764     123567   236889999999987743 44 333  89999999988743  222   578899


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCC-CceeeeCCceeEEEeccc-----cccCCCCCc-------ceEEecc
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSS-ELESIVAPSLQQLTLVRV-----IVVATCPNL-------KKLHLSE  243 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~-~~~~i~aP~L~~L~l~~~-----~~~~~l~~L-------~~L~L~~  243 (520)
                      .|+|+++.. ..+.- .+++|+.|+++++.... +.  +. ++|++|.+...     ..+..  +|       +.|++++
T Consensus       144 ~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          144 YINADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             EEECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCCCC----------CCEEEECCS
T ss_pred             EEeCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCC
Confidence            999988852 21221 36789999998887421 22  22 77777777521     01211  55       7777777


Q ss_pred             cccchhHHHHHHhCCcccceeecccccc
Q 039643          244 IVLEDQEFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      |.++.  +..-+..+++|+.|.|+++..
T Consensus       217 N~l~~--lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          217 NRITH--IPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             SCCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred             Cccee--cCHHHhcCCCCCEEEeeCCcC
Confidence            66653  222233477777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.79  E-value=9.8e-06  Score=73.66  Aligned_cols=138  Identities=15%  Similarity=0.117  Sum_probs=70.1

Q ss_pred             cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeE
Q 039643          142 LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQ  221 (520)
Q Consensus       142 ~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~  221 (520)
                      +.+..+++|+.|+|+++.+..  ++.+...+|.|+.|+++++.--..-.+.++++|+.|+++++...    .+.      
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~----~~~------   80 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC----RIG------   80 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC----EEC------
T ss_pred             HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc----ccC------
Confidence            345667788888888777632  12233334577777777664211112334566666666665421    000      


Q ss_pred             EEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCch-hHHhcCC
Q 039643          222 LTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSL-RAVDLDT  300 (520)
Q Consensus       222 L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l-~~lL~~~  300 (520)
                           +..+..+++|+.|+++++.++.-.....+.++++|+.|.++++.... .               ... ...+..+
T Consensus        81 -----~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~---------------~~~~~~~~~~l  139 (176)
T 1a9n_A           81 -----EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-K---------------KHYRLYVIYKV  139 (176)
T ss_dssp             -----SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-S---------------TTHHHHHHHHC
T ss_pred             -----cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-c---------------HhHHHHHHHHC
Confidence                 01124566666666666655431111234556666666666554210 0               000 0245667


Q ss_pred             CCccEeEecccC
Q 039643          301 PNLLSFTFESVR  312 (520)
Q Consensus       301 P~L~~L~l~~~~  312 (520)
                      |+|+.|++..+.
T Consensus       140 ~~L~~Ld~~~n~  151 (176)
T 1a9n_A          140 PQVRVLDFQKVK  151 (176)
T ss_dssp             TTCSEETTEECC
T ss_pred             CccceeCCCcCC
Confidence            777777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.77  E-value=1.3e-05  Score=82.36  Aligned_cols=82  Identities=12%  Similarity=0.064  Sum_probs=37.8

Q ss_pred             CCCcceEEecccccchhH---HHHHHhCCcccceeecccccccc----ccc---cccccccEEEeecCCch-------hH
Q 039643          233 CPNLKKLHLSEIVLEDQE---FHELISKFPLLEDLSVSSSQPLE----RVK---FSSNLLKRVAFLFCRSL-------RA  295 (520)
Q Consensus       233 l~~L~~L~L~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~~l~----~~~---~~f~~L~~L~L~~c~~l-------~~  295 (520)
                      .++|++|+|++|.+++..   +...+..+++|+.|+|++|..-.    ...   ....+|+.|+|++|.-.       ..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            344555555554443321   22333445555555555544210    000   11234555555554221       13


Q ss_pred             HhcCCCCccEeEecccCCC
Q 039643          296 VDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       296 lL~~~P~L~~L~l~~~~~~  314 (520)
                      .+...|+|+.|+++++.+.
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCC
T ss_pred             HHHhCCCCCEEeccCCCCC
Confidence            3445677777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.72  E-value=2.6e-05  Score=72.02  Aligned_cols=116  Identities=20%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             ccccCcccccCCCccEEEEeccccCC-Cc--ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--ee
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PL--IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FF  189 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~--~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l  189 (520)
                      ...+|..++.  +|++|.|+++.+.. ++  .+..+++|++|+|+++.+.. .....+.+++.|+.|+|+++.-..  .-
T Consensus        20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   96 (192)
T 1w8a_A           20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-cCHhHcCCcccCCEEECCCCcCCccCHH
Confidence            3456766543  88889898887643 33  26788888888888887632 112234567888888888775211  11


Q ss_pred             ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643          190 SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED  248 (520)
Q Consensus       190 ~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~  248 (520)
                      .+.++++|+.|+++++...    .+           .+..+..+++|++++++++.+++
T Consensus        97 ~~~~l~~L~~L~L~~N~l~----~~-----------~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDNQIS----CV-----------MPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCC----EE-----------CTTSSTTCTTCCEEECTTCCBCC
T ss_pred             HhcCCCCCCEEECCCCcCC----ee-----------CHHHhhcCCCCCEEEeCCCCccC
Confidence            2445677777777776531    00           02235667788888887766653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.71  E-value=1.6e-05  Score=73.40  Aligned_cols=124  Identities=17%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             cEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEEecc
Q 039643          129 TTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDY  205 (520)
Q Consensus       129 ~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~  205 (520)
                      ++|+++++.+.. |...  .++|+.|+|+++.+..-.....+..++.|+.|+|+++.-  +..-.+.++++|+.|+++++
T Consensus        11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            678888877643 4432  349999999998773211112356778888888888752  22223445778888888877


Q ss_pred             cCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          206 SRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       206 ~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      ...    .+.           +..+.++++|++|+++++.+++. ....+..+++|+.|.+++++
T Consensus        89 ~l~----~~~-----------~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 KIK----EIS-----------NKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCC----EEC-----------SSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred             cCC----ccC-----------HHHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCC
Confidence            631    110           12356788888888888776542 22446677888888887765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=5e-06  Score=85.47  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=17.2

Q ss_pred             CCCCEEEecceecChHHHHHHHhcCCCcceeeeecc
Q 039643          148 NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYT  183 (520)
Q Consensus       148 ~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c  183 (520)
                      ++|++|+|+++.+++..+..+...++.|+.|+|++|
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            345555555554444444444444444555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.66  E-value=3.3e-05  Score=71.51  Aligned_cols=64  Identities=23%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             ccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeecc
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYT  183 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c  183 (520)
                      .+|..+.  ++|++|.|+++.+. .|..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|+++
T Consensus        24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCC
Confidence            4554433  45666666666553 24455566666666666655421 00111334455555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.60  E-value=3.1e-05  Score=70.77  Aligned_cols=61  Identities=8%  Similarity=0.053  Sum_probs=43.4

Q ss_pred             CCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceec---ccc----ccccceEEEeccc
Q 039643          145 INLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFS---VSK----AHKLKNMVIVDYS  206 (520)
Q Consensus       145 ~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~---I~~----~~~Lk~L~I~~~~  206 (520)
                      ..-..|+.|+|+++.+++..+..+ ++|+.|+.|+|.+|..++.-.   |..    +++|+.|++++|.
T Consensus        58 ~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           58 LDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             TTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             CCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            334579999999999888788776 789999999999997654321   221    2456677776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.59  E-value=0.00018  Score=74.58  Aligned_cols=191  Identities=13%  Similarity=0.133  Sum_probs=108.6

Q ss_pred             ccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceec---ChHHHHHHHhcCCCcceeeeecc-CCcceecc
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYA---NEQMVHNLIAECCSLEDLSLRYT-LGLKFFSV  191 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~---~~~~l~~Lls~CP~LE~L~L~~c-~~l~~l~I  191 (520)
                      .++...|...+|+.+.|....-.+ ...+.++++|+.+.|..+.+   ....|.     |..|+.+.|... ..+..-..
T Consensus       148 ~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~l~~I~~~aF  222 (401)
T 4fdw_A          148 SIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVTLKEIGSQAF  222 (401)
T ss_dssp             EECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTTCCEECTTTT
T ss_pred             EECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCchheehhhHh
Confidence            344433433457777766521111 23466777788887765433   333332     577777777533 11111223


Q ss_pred             ccccccceEEEecccCCCCceeeeCCceeEEEecc------ccccCCCCCcceEEecccccch----hHHHHHHhCCccc
Q 039643          192 SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLED----QEFHELISKFPLL  261 (520)
Q Consensus       192 ~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~----~~~~~ll~~l~~L  261 (520)
                      .++++|+.+.+...-...+...+...+|+.+.++.      ...|.+|++|+.+.+..+....    ......|.+|++|
T Consensus       223 ~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L  302 (401)
T 4fdw_A          223 LKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL  302 (401)
T ss_dssp             TTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred             hCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence            45778888887654211111222335788888752      3457889999999987643320    0122467889999


Q ss_pred             ceeeccccccccccc----cccccccEEEeecC-Cchh-HHhcCCCCccEeEecccCCCC
Q 039643          262 EDLSVSSSQPLERVK----FSSNLLKRVAFLFC-RSLR-AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       262 ~~L~L~~~~~l~~~~----~~f~~L~~L~L~~c-~~l~-~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      +.+.|...  +..++    ..+.+|+.+.|... ..+. ..+.++ +|+++.+.++..+.
T Consensus       303 ~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          303 ARFEIPES--IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CEECCCTT--CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             CeEEeCCc--eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            99998753  22222    12357888888532 1111 455677 89999998876554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.56  E-value=6.8e-05  Score=69.39  Aligned_cols=80  Identities=23%  Similarity=0.114  Sum_probs=56.6

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      .++++|++...     ....+|..+..+++|++|+|+++.+..  +..+.++++|++|+|+++.+..-. ...+.+++.|
T Consensus        31 ~~l~~L~L~~n-----~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGN-----QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSS-----CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTC
T ss_pred             CCCCEEECCCC-----cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCC
Confidence            57899988764     234678888889999999999997744  345889999999999998873200 1123445555


Q ss_pred             ceeeeecc
Q 039643          176 EDLSLRYT  183 (520)
Q Consensus       176 E~L~L~~c  183 (520)
                      +.|+|.++
T Consensus       105 ~~L~L~~N  112 (193)
T 2wfh_A          105 RLLSLHGN  112 (193)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            55555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.55  E-value=6.5e-05  Score=81.52  Aligned_cols=101  Identities=21%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      ..++.|++...     ....+|. +..+++|+.|+|++|.+. .|..+.++++|++|+|+++.+..  ++ -+++++.|+
T Consensus       441 ~~L~~L~Ls~n-----~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~  511 (567)
T 1dce_A          441 ADVRVLHLAHK-----DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQ  511 (567)
T ss_dssp             TTCSEEECTTS-----CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCC
T ss_pred             cCceEEEecCC-----CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCc
Confidence            35677776543     2234665 777888888888887663 47777888888888888887743  33 467788888


Q ss_pred             eeeeeccCC--cc-eeccccccccceEEEecccC
Q 039643          177 DLSLRYTLG--LK-FFSVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       177 ~L~L~~c~~--l~-~l~I~~~~~Lk~L~I~~~~~  207 (520)
                      .|+|+++.-  +. .-.+.++++|+.|+++++..
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            888888742  21 23455678888888887763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.53  E-value=0.00014  Score=65.82  Aligned_cols=115  Identities=18%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             cccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceecc
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSV  191 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I  191 (520)
                      ..+|..+.  ++|++|+|+++.+.. ++ .+..+++|++|+|.++.+.. .....+.+++.|+.|++.++.--  ..-.+
T Consensus        20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~   96 (177)
T 2o6r_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVF   96 (177)
T ss_dssp             SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCCccccCHHHh
Confidence            34555443  578888888876643 33 35678888888888877631 11123456778888888776421  11113


Q ss_pred             ccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643          192 SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED  248 (520)
Q Consensus       192 ~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~  248 (520)
                      .++++|+.|+++++...  .  +.           ...+..+++|++++++++.+++
T Consensus        97 ~~l~~L~~L~l~~N~l~--~--~~-----------~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           97 DKLTQLKELALDTNQLK--S--VP-----------DGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTCTTCCEEECCSSCCS--C--CC-----------TTTTTTCTTCCEEECCSSCBCC
T ss_pred             hCCcccCEEECcCCcce--E--eC-----------HHHhcCCcccCEEEecCCCeec
Confidence            34677777777766531  0  00           1124567777778877766654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.51  E-value=8.7e-05  Score=74.38  Aligned_cols=154  Identities=13%  Similarity=0.090  Sum_probs=90.0

Q ss_pred             CCCccEEEEeccccC-C-CcccCCCCCCCEEEecceec---ChHHHHHHHhcCCCcceeeeec-----------------
Q 039643          125 AKLLTTLVLNGCRLD-E-PLIAINLNSLKNLSLQRVYA---NEQMVHNLIAECCSLEDLSLRY-----------------  182 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~-~-p~~~~~l~sLk~L~L~~v~~---~~~~l~~Lls~CP~LE~L~L~~-----------------  182 (520)
                      |++|+.|.|.. .+. + ...+.++++|+.|.|..+.+   .+..|    .+|..+..+.+..                 
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF----~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSS----CTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhh----cCCCceEEecCcchhhhhcccccccccccc
Confidence            79999999988 442 2 34578899999999977642   22222    3455555444322                 


Q ss_pred             cCCcc--------------------------eeccc-------------cccccceEEEecccCC-CC-ceeeeCCceeE
Q 039643          183 TLGLK--------------------------FFSVS-------------KAHKLKNMVIVDYSRS-SE-LESIVAPSLQQ  221 (520)
Q Consensus       183 c~~l~--------------------------~l~I~-------------~~~~Lk~L~I~~~~~~-~~-~~~i~aP~L~~  221 (520)
                      |..++                          .+.+.             .+++|+.+++.++... .+ ..--.+++|+.
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            11111                          00000             1678999998876421 11 11224678888


Q ss_pred             EEec------cccccCCCCCcc-eEEecccccchhHHHHHHhCCcccceeeccccccccccc-cc---cccccEEE
Q 039643          222 LTLV------RVIVVATCPNLK-KLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK-FS---SNLLKRVA  286 (520)
Q Consensus       222 L~l~------~~~~~~~l~~L~-~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~-~~---f~~L~~L~  286 (520)
                      +.++      +...|.+|++|+ .+.+.. .++. .....|.+|++|+.|.+..+.. ..++ ..   ..+|+.++
T Consensus       255 l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i-~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKI-TTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCC-CEECTTTTCTTCCCCEEE
T ss_pred             EECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCcc-CccchhhhcCCcchhhhc
Confidence            8875      244578899999 999975 2221 1124578999999999866542 2221 12   34666664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.0004  Score=69.53  Aligned_cols=14  Identities=14%  Similarity=0.192  Sum_probs=8.0

Q ss_pred             CCCccEEEEecccc
Q 039643          125 AKLLTTLVLNGCRL  138 (520)
Q Consensus       125 ~~sL~~L~L~~c~l  138 (520)
                      +++|++|+|+++.+
T Consensus        48 l~~L~~LdLs~n~i   61 (329)
T 3sb4_A           48 FPSLKVLDISNAEI   61 (329)
T ss_dssp             CTTCCEEEEEEEEE
T ss_pred             hccCeEEecCccee
Confidence            45566666666544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.24  E-value=7.7e-05  Score=83.35  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      ..++.|+|...     ....+|..++.+++|++|+|++|.+. .|..+.++++|++|+|+++.+.  .++.-+.+++.|+
T Consensus       224 ~~L~~L~Ls~n-----~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~  296 (727)
T 4b8c_D          224 QLWHALDLSNL-----QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLK  296 (727)
T ss_dssp             CCCCEEECTTS-----CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCS
T ss_pred             CCCcEEECCCC-----CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCC
Confidence            56778877553     23478999999999999999999774 4778899999999999999885  3344467899999


Q ss_pred             eeeeeccCCcc-eeccccccccceEEEecccC
Q 039643          177 DLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       177 ~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~  207 (520)
                      .|+|.+|..-. ...+.++++|+.|+++++..
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            99999985211 22366689999999999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.23  E-value=0.00028  Score=63.80  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             CCceEEEEEecCCCCCcccccCcc-cccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQA-IYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~-l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+|.. +..+++|++|+|+++.+.. ++ .+..+++|+.|+|+++.+.. .....+..++.
T Consensus        28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~  101 (177)
T 2o6r_A           28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQ  101 (177)
T ss_dssp             TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCcEEEeCCC-----cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcc
Confidence            57899998764     22345554 4568999999999997744 33 36899999999999998742 11223567899


Q ss_pred             cceeeeeccCCc--ceeccccccccceEEEecccC
Q 039643          175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSR  207 (520)
Q Consensus       175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~  207 (520)
                      |+.|++.++.-.  ..-.+.++++|+.|+++++..
T Consensus       102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            999999998521  111134478899999888763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.23  E-value=8.9e-05  Score=68.58  Aligned_cols=107  Identities=21%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--ccccccccceEEEecccCCCCceeeeCCcee
Q 039643          143 IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQ  220 (520)
Q Consensus       143 ~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~  220 (520)
                      .+..+++|++|+|+++.+.+  ++ .+.+++.|+.|++.+|.- ..+  .+..+++|+.|+++++....    +      
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~----l------  108 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS----L------  108 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCC----H------
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCc----C------
Confidence            56778888888888877732  22 345667788888877741 111  12224677777777765210    0      


Q ss_pred             EEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          221 QLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       221 ~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                             ..+..+++|+.|+++++.++.-.....+..+++|+.|.++++.
T Consensus       109 -------~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          109 -------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -------HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             -------CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence                   1245677788888877777642222456777888888877765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.17  E-value=0.00027  Score=63.78  Aligned_cols=42  Identities=21%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             ccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceec
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYA  160 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~  160 (520)
                      .+|..+.  ++|++|+|+++.+..  |..+.++++|++|+|+++.+
T Consensus        23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   66 (170)
T 3g39_A           23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL   66 (170)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc
Confidence            3454442  556666666665522  33355566666666665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.12  E-value=0.00034  Score=63.46  Aligned_cols=42  Identities=21%  Similarity=0.229  Sum_probs=22.4

Q ss_pred             ccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceec
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYA  160 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~  160 (520)
                      .+|..+.  ++|++|+|+++.+..  |..+.++++|++|+|+++.+
T Consensus        26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   69 (174)
T 2r9u_A           26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL   69 (174)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC
Confidence            4454443  556666666655422  33445566666666665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.75  E-value=0.0012  Score=60.37  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=22.8

Q ss_pred             CCCCCcceEEe--cccccchhH---HHHHHhCCcccceeeccccc
Q 039643          231 ATCPNLKKLHL--SEIVLEDQE---FHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       231 ~~l~~L~~L~L--~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~  270 (520)
                      ...++|++|+|  +.+.+++..   +...+...++|+.|+|+++.
T Consensus       118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            34455666666  555555432   33455556667777766654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.71  E-value=0.00053  Score=62.87  Aligned_cols=93  Identities=11%  Similarity=0.099  Sum_probs=45.7

Q ss_pred             CCCCCCCEEEecceecChHH---HHHHHhcCCCcceeeeeccCCc----cee--ccccccccceEEE--ecccCCCCcee
Q 039643          145 INLNSLKNLSLQRVYANEQM---VHNLIAECCSLEDLSLRYTLGL----KFF--SVSKAHKLKNMVI--VDYSRSSELES  213 (520)
Q Consensus       145 ~~l~sLk~L~L~~v~~~~~~---l~~Lls~CP~LE~L~L~~c~~l----~~l--~I~~~~~Lk~L~I--~~~~~~~~~~~  213 (520)
                      ...++|++|+|+++.+++..   +...+..++.|++|+|.+|.--    ..+  .+...++|+.|++  .++........
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            34556666666666664433   3334555666777766666421    111  1223466777777  44543211000


Q ss_pred             eeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643          214 IVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED  248 (520)
Q Consensus       214 i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~  248 (520)
                      .    |       ...+...++|++|+++++.++.
T Consensus       142 ~----l-------~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          142 E----I-------ANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             H----H-------HHHHHHCSSCCEEECCCSSHHH
T ss_pred             H----H-------HHHHHhCCCcCEEeccCCCCCh
Confidence            0    0       0123445667777777666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.65  E-value=0.0076  Score=62.21  Aligned_cols=162  Identities=11%  Similarity=0.130  Sum_probs=99.2

Q ss_pred             ccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecce-e-cChHHHHHHHhcCCCcceeeeecc-CCcceeccccccc
Q 039643          121 AIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRV-Y-ANEQMVHNLIAECCSLEDLSLRYT-LGLKFFSVSKAHK  196 (520)
Q Consensus       121 ~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v-~-~~~~~l~~Lls~CP~LE~L~L~~c-~~l~~l~I~~~~~  196 (520)
                      .+..|.+|+.++|..+.+.. +.......+|+.+.|... . +.+.    .+.+|+.|+.+.+... ..+..-...+ .+
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~  249 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPENVSTIGQEAFRE-SG  249 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTTCCEECTTTTTT-CC
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCEEecCCCccCcccccccc-CC
Confidence            44568999999999865532 444444689999999643 2 2333    3578999999999763 1111112332 67


Q ss_pred             cceEEEecccCCCC-ceeeeCCceeEEEecc------------ccccCCCCCcceEEecccccchhHHHHHHhCCcccce
Q 039643          197 LKNMVIVDYSRSSE-LESIVAPSLQQLTLVR------------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLED  263 (520)
Q Consensus       197 Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~~------------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~  263 (520)
                      |+.+.+...-...+ ..--.+++|+.+.+..            ...|.+|++|+.+.+..+ ++. .-...|.+|++|+.
T Consensus       250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~-I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI-LGQGLLGGNRKVTQ  327 (401)
T ss_dssp             CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCCSCCE
T ss_pred             ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE-EhhhhhcCCCCccE
Confidence            88888854321111 1122567888888742            234678999999998642 211 11245788999999


Q ss_pred             eecccccc-ccccc-cccccccEEEeecC
Q 039643          264 LSVSSSQP-LERVK-FSSNLLKRVAFLFC  290 (520)
Q Consensus       264 L~L~~~~~-l~~~~-~~f~~L~~L~L~~c  290 (520)
                      +.|..... +.... ... +|+.+.+.+.
T Consensus       328 l~lp~~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          328 LTIPANVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             EEECTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred             EEECccccEEcHHhCCCC-CCCEEEEcCC
Confidence            99965421 11111 123 7888888763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.40  E-value=0.002  Score=64.60  Aligned_cols=68  Identities=19%  Similarity=0.175  Sum_probs=44.7

Q ss_pred             ccccCcccccCCCccEEEEec-cccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC
Q 039643          115 AYTLPQAIYSAKLLTTLVLNG-CRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL  184 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~-c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~  184 (520)
                      ...+|. +..+++|++|+|++ +.+.. + ..+.++++|+.|+|+++.+.. ..+..+.+++.|+.|+|+++.
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc
Confidence            345777 77778888888885 66643 3 456778888888888877632 112234566777777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.05  E-value=0.0038  Score=56.10  Aligned_cols=81  Identities=21%  Similarity=0.177  Sum_probs=56.6

Q ss_pred             CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .+++.|++...     ....+ |..+..+++|++|+|+++.+.. |+ .+.++++|++|+|+++.+.. .....+..++.
T Consensus        30 ~~l~~L~L~~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~  103 (170)
T 3g39_A           30 TTTQVLYLYDN-----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKS  103 (170)
T ss_dssp             TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCcEEEcCCC-----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCC
Confidence            67888888664     23344 5566788999999999997744 44 35789999999999988731 11122455677


Q ss_pred             cceeeeeccC
Q 039643          175 LEDLSLRYTL  184 (520)
Q Consensus       175 LE~L~L~~c~  184 (520)
                      |+.|+|.++.
T Consensus       104 L~~L~L~~N~  113 (170)
T 3g39_A          104 LTHIWLLNNP  113 (170)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEeCCCC
Confidence            7777777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.97  E-value=0.0049  Score=55.67  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=57.2

Q ss_pred             CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC-Ccc-cCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE-PLI-AINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~-p~~-~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      .++++|++...     ....+ |..+..+++|++|+|+++.+.. |+. +.++++|++|+|+++.+.. .....+..++.
T Consensus        33 ~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~  106 (174)
T 2r9u_A           33 TDKQRLWLNNN-----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKS  106 (174)
T ss_dssp             TTCSEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCcEEEeCCC-----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccC
Confidence            67899988764     23344 5566788999999999998744 444 5789999999999987731 11122455677


Q ss_pred             cceeeeeccC
Q 039643          175 LEDLSLRYTL  184 (520)
Q Consensus       175 LE~L~L~~c~  184 (520)
                      |+.|+|.++.
T Consensus       107 L~~L~L~~N~  116 (174)
T 2r9u_A          107 LTHIYLYNNP  116 (174)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEEeCCCC
Confidence            7777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.23  E-value=0.054  Score=52.60  Aligned_cols=86  Identities=26%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             HHHHHhcCCCcceeeeeccCC--cceec--cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEE
Q 039643          165 VHNLIAECCSLEDLSLRYTLG--LKFFS--VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLH  240 (520)
Q Consensus       165 l~~Lls~CP~LE~L~L~~c~~--l~~l~--I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~  240 (520)
                      ++....++|.|+.|+|+++.-  +..+.  +..+++|+.|+++++....  .    ..+        ..+..+ +|++|.
T Consensus       162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~----~~l--------~~l~~l-~L~~L~  226 (267)
T 3rw6_A          162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E----REL--------DKIKGL-KLEELW  226 (267)
T ss_dssp             HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G----GGG--------GGGTTS-CCSEEE
T ss_pred             HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c----hhh--------hhcccC-CcceEE
Confidence            333446789999999998852  22221  2247888888888876311  0    001        012233 888899


Q ss_pred             ecccccch------hHHHHHHhCCcccceee
Q 039643          241 LSEIVLED------QEFHELISKFPLLEDLS  265 (520)
Q Consensus       241 L~~~~~~~------~~~~~ll~~l~~L~~L~  265 (520)
                      +++|.+.+      .....++..+|+|+.|+
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            98877653      23346788889988886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.76  E-value=0.043  Score=53.29  Aligned_cols=58  Identities=26%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             CCCccEEEEeccccCC----CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccC
Q 039643          125 AKLLTTLVLNGCRLDE----PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTL  184 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~~----p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~  184 (520)
                      +++|+.|+|+++.+..    |..+..+++|+.|+|+++.+ +-..+..+ .+. .|++|.|.++.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNS  231 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTST
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCc
Confidence            4567777777765532    22234667777777777766 32233332 223 67777776664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=93.19  E-value=0.035  Score=55.34  Aligned_cols=80  Identities=18%  Similarity=0.101  Sum_probs=55.5

Q ss_pred             CCceEEEEEe-cCCCCCcccccC-cccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643           98 NGVKELHIVV-ESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECC  173 (520)
Q Consensus        98 ~~VkeL~L~~-~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP  173 (520)
                      .++++|+|.. .     ....+| ..+..+++|+.|+|+++.+..  |..+.++++|+.|+|+++.+.. .....+...+
T Consensus        31 ~~L~~L~l~~~n-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~  104 (347)
T 2ifg_A           31 ENLTELYIENQQ-----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLS  104 (347)
T ss_dssp             SCCSEEECCSCS-----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCC
T ss_pred             CCeeEEEccCCC-----CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCC
Confidence            4699999964 3     234555 456788999999999997743  4467899999999999998732 0011222233


Q ss_pred             CcceeeeeccC
Q 039643          174 SLEDLSLRYTL  184 (520)
Q Consensus       174 ~LE~L~L~~c~  184 (520)
                       |+.|+|.++.
T Consensus       105 -L~~l~l~~N~  114 (347)
T 2ifg_A          105 -LQELVLSGNP  114 (347)
T ss_dssp             -CCEEECCSSC
T ss_pred             -ceEEEeeCCC
Confidence             7777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.20  E-value=0.46  Score=48.22  Aligned_cols=177  Identities=11%  Similarity=0.109  Sum_probs=88.0

Q ss_pred             cccCCCccEEEEecc--ccCCCcccCCCCCCCEEEecceec--ChHHHHHHHhcCCCcceeeeeccC-Ccceeccccccc
Q 039643          122 IYSAKLLTTLVLNGC--RLDEPLIAINLNSLKNLSLQRVYA--NEQMVHNLIAECCSLEDLSLRYTL-GLKFFSVSKAHK  196 (520)
Q Consensus       122 l~~~~sL~~L~L~~c--~l~~p~~~~~l~sLk~L~L~~v~~--~~~~l~~Lls~CP~LE~L~L~~c~-~l~~l~I~~~~~  196 (520)
                      +..|.+|+.+.+...  .+. ...+.+++.|+.+.+.....  .+     ....|..|+.+.+.... .+..-...++..
T Consensus       181 F~~c~~L~~i~l~~~~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~-----~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~  254 (394)
T 4fs7_A          181 FSGCGKLKSIKLPRNLKIIR-DYCFAECILLENMEFPNSLYYLGD-----FALSKTGVKNIIIPDSFTELGKSVFYGCTD  254 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCEEC-TTTTTTCTTCCBCCCCTTCCEECT-----TTTTTCCCCEEEECTTCCEECSSTTTTCSS
T ss_pred             ccCCCCceEEEcCCCceEeC-chhhccccccceeecCCCceEeeh-----hhcccCCCceEEECCCceeccccccccccc
Confidence            345788888888664  121 23466777888777754432  22     12346677777765431 111112223566


Q ss_pred             cceEEEecccCCCC-ceeeeCCceeEEEec----cccccCCCCCcceEEeccc--ccchhHHHHHHhCCcccceeecccc
Q 039643          197 LKNMVIVDYSRSSE-LESIVAPSLQQLTLV----RVIVVATCPNLKKLHLSEI--VLEDQEFHELISKFPLLEDLSVSSS  269 (520)
Q Consensus       197 Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~----~~~~~~~l~~L~~L~L~~~--~~~~~~~~~ll~~l~~L~~L~L~~~  269 (520)
                      |+.+.+........ ..-..+++++.+.+.    ....+..+.+|+++.+..+  .+.+    ..+.+|++|+.+.|...
T Consensus       255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             CCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCTT
T ss_pred             ceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccceech----hhhcCCCCCCEEEeCCc
Confidence            66666654321000 011123445544443    1223456667777766431  1211    23566777777776432


Q ss_pred             ccccccc-cc---cccccEEEeecC-Cchh-HHhcCCCCccEeEecc
Q 039643          270 QPLERVK-FS---SNLLKRVAFLFC-RSLR-AVDLDTPNLLSFTFES  310 (520)
Q Consensus       270 ~~l~~~~-~~---f~~L~~L~L~~c-~~l~-~lL~~~P~L~~L~l~~  310 (520)
                        +..++ ..   ..+|+.+.+... .... ..+.+|++|+++++..
T Consensus       331 --v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          331 --VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             --CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred             --ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence              22221 11   245666666431 1111 4456777777777743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.56  E-value=0.27  Score=49.99  Aligned_cols=140  Identities=12%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             cccccCCCccEEEEecc--ccCCCcccCCCCCCCEEEeccee--cChHHHHHHHhcCCCcceeeeeccCCcceecccccc
Q 039643          120 QAIYSAKLLTTLVLNGC--RLDEPLIAINLNSLKNLSLQRVY--ANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAH  195 (520)
Q Consensus       120 ~~l~~~~sL~~L~L~~c--~l~~p~~~~~l~sLk~L~L~~v~--~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~  195 (520)
                      ...+.+..|+.+.+...  .+. ...+.++..|+.+.+....  +...    .+..|+.|+.+...... .......++.
T Consensus       224 ~~~~~~~~l~~i~ip~~~~~i~-~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~  297 (394)
T 4fs7_A          224 DFALSKTGVKNIIIPDSFTELG-KSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCS  297 (394)
T ss_dssp             TTTTTTCCCCEEEECTTCCEEC-SSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCT
T ss_pred             hhhcccCCCceEEECCCceecc-cccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-eccccccccc
Confidence            34455677888877653  222 1345677778877775432  1222    23567777766554321 1111122356


Q ss_pred             ccceEEEecccCCCCcee-eeCCceeEEEec------cccccCCCCCcceEEeccc--ccchhHHHHHHhCCcccceeec
Q 039643          196 KLKNMVIVDYSRSSELES-IVAPSLQQLTLV------RVIVVATCPNLKKLHLSEI--VLEDQEFHELISKFPLLEDLSV  266 (520)
Q Consensus       196 ~Lk~L~I~~~~~~~~~~~-i~aP~L~~L~l~------~~~~~~~l~~L~~L~L~~~--~~~~~~~~~ll~~l~~L~~L~L  266 (520)
                      +|+.+.+...-...+... -.+.+|+.+.++      +...|.+|.+|+.+.+..+  .+..    ..|.+|++|+.+.+
T Consensus       298 ~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          298 SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGA----NAFQGCINLKKVEL  373 (394)
T ss_dssp             TCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECT----TTBTTCTTCCEEEE
T ss_pred             cccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccEehH----HHhhCCCCCCEEEE
Confidence            677666644321011111 134666666664      2345678888888888542  2222    35778888998888


Q ss_pred             ccc
Q 039643          267 SSS  269 (520)
Q Consensus       267 ~~~  269 (520)
                      ...
T Consensus       374 p~~  376 (394)
T 4fs7_A          374 PKR  376 (394)
T ss_dssp             EGG
T ss_pred             CCC
Confidence            654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=87.16  E-value=0.83  Score=46.24  Aligned_cols=116  Identities=11%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             HhcCCCcceeeeeccC-CcceeccccccccceEEEecccCCCCce-eeeCCceeEEEec------cccccCCCCCcceEE
Q 039643          169 IAECCSLEDLSLRYTL-GLKFFSVSKAHKLKNMVIVDYSRSSELE-SIVAPSLQQLTLV------RVIVVATCPNLKKLH  240 (520)
Q Consensus       169 ls~CP~LE~L~L~~c~-~l~~l~I~~~~~Lk~L~I~~~~~~~~~~-~i~aP~L~~L~l~------~~~~~~~l~~L~~L~  240 (520)
                      +.+|..|+.+.+.+.. .+..-...++++|+.+.+...-...+.. --.+++|+.+.++      +...|.+|.+|+++.
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence            4567777777765431 1111122336667766664322101111 1235677777765      234567888888888


Q ss_pred             ecc--cccchhHHHHHHhCCcccceeeccccccccccccccccccEEEee
Q 039643          241 LSE--IVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFL  288 (520)
Q Consensus       241 L~~--~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~  288 (520)
                      |..  ..+..    ..|.+|++|+.+++.+.......-....+|+.+.+.
T Consensus       341 ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          341 IPSSVTKIPE----SAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA  386 (394)
T ss_dssp             ECTTCCBCCG----GGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred             ECcccCEEhH----hHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence            853  22322    357788888888887654211111123456666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.64  E-value=0.67  Score=46.94  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=67.2

Q ss_pred             ccccccceEEEecccCCCC-ceeeeCCceeEEEec------cccccCCCCCcceEEecc--cccchhHHHHHHhCCcccc
Q 039643          192 SKAHKLKNMVIVDYSRSSE-LESIVAPSLQQLTLV------RVIVVATCPNLKKLHLSE--IVLEDQEFHELISKFPLLE  262 (520)
Q Consensus       192 ~~~~~Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~------~~~~~~~l~~L~~L~L~~--~~~~~~~~~~ll~~l~~L~  262 (520)
                      .++.+|+.+.+.......+ ....++++|+.+.++      +...|.+|.+|+++.|..  ..+.+    ..|.+|.+|+
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~  337 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLE  337 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCC
T ss_pred             eecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCC
Confidence            3578888888754431111 112246788888875      234578899999999964  23322    3578999999


Q ss_pred             eeeccccccccccc----cccccccEEEeecCCchhHHhcCCCCccEeEecc
Q 039643          263 DLSVSSSQPLERVK----FSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFES  310 (520)
Q Consensus       263 ~L~L~~~~~l~~~~----~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~  310 (520)
                      .+.|...  +..++    ..+.+|+.+.+.+..........+.+|+.+.+..
T Consensus       338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          338 RIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             EEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred             EEEECcc--cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence            9999653  22222    1246799999876333334446677888887753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.76  E-value=0.33  Score=44.70  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             CCccHHHHHHHHHh--CCceEEEEEec-CCCCCcccccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEE
Q 039643           84 SSSLVDKWIGLAVG--NGVKELHIVVE-SSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLS  154 (520)
Q Consensus        84 ~~~~v~~Wl~~a~~--~~VkeL~L~~~-~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~  154 (520)
                      ...+++..+..+..  ..+++|+|... .........|-..+-.-.+|+.|+|++|.+..      ......=..|++|+
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence            45678888888765  45777777531 11111122333444445677777777765532      01112335677777


Q ss_pred             ecceecChHHHHHHHh---cCCCcceeeeec
Q 039643          155 LQRVYANEQMVHNLIA---ECCSLEDLSLRY  182 (520)
Q Consensus       155 L~~v~~~~~~l~~Lls---~CP~LE~L~L~~  182 (520)
                      |.++.+++.....+..   .-..|++|+|.+
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            7776665555444432   223355555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	520
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.16
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.06
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.97
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.84
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.67
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.55
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.27
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.18
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.17
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.86
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.2
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.95
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6e-12  Score=122.63  Aligned_cols=175  Identities=21%  Similarity=0.275  Sum_probs=113.6

Q ss_pred             ccCCCccEEEEeccccCC---CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceec----ccccc
Q 039643          123 YSAKLLTTLVLNGCRLDE---PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFS----VSKAH  195 (520)
Q Consensus       123 ~~~~sL~~L~L~~c~l~~---p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~----I~~~~  195 (520)
                      +....|++|+|++|.+..   ...+..+++|++|+|.++.+++..+.. ++.||+|+.|++++|.++....    ..+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHH
Confidence            344578888888775532   233567788888888888776655554 4567888888888876654211    22367


Q ss_pred             ccceEEEecccCCCCceeeeCCceeEEEecccccc-CCCCCcceEEeccc--ccchhHHHHHHhCCcccceeeccccccc
Q 039643          196 KLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVV-ATCPNLKKLHLSEI--VLEDQEFHELISKFPLLEDLSVSSSQPL  272 (520)
Q Consensus       196 ~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~-~~l~~L~~L~L~~~--~~~~~~~~~ll~~l~~L~~L~L~~~~~l  272 (520)
                      +|++|++++|....+...             ...+ ..+++|++++++++  .+++..+..+..++|+|+.|++++|..+
T Consensus       122 ~L~~L~ls~c~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHV-------------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             TCCEEECCCCTTCCHHHH-------------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             hccccccccccccccccc-------------hhhhcccccccchhhhcccccccccccccccccccccccccccccccCC
Confidence            788888877753111000             0011 23567888888753  4566667778888999999999888765


Q ss_pred             cccc----cccccccEEEeecCCchh----HHhcCCCCccEeEeccc
Q 039643          273 ERVK----FSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESV  311 (520)
Q Consensus       273 ~~~~----~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~  311 (520)
                      ...+    ..+++|++|.+++|.++.    ..+..+|+|+.|++.++
T Consensus       189 td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3222    235689999998887643    34567899999988765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.6e-12  Score=124.29  Aligned_cols=191  Identities=21%  Similarity=0.296  Sum_probs=129.1

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee-cChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY-ANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~CP~  174 (520)
                      .++++|++....   ...-.++..+..|++|++|.|++|.+..  +.....+++|++|+|++|. +++..+..+..+||.
T Consensus        46 ~~L~~LdLs~~~---i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          46 FRVQHMDLSNSV---IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             BCCCEEECTTCE---ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCEEECCCCc---cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            368888875421   1122344456678999999999997643  4456789999999999985 488899999999999


Q ss_pred             cceeeeeccCCcceec----c-ccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEeccc-ccch
Q 039643          175 LEDLSLRYTLGLKFFS----V-SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEI-VLED  248 (520)
Q Consensus       175 LE~L~L~~c~~l~~l~----I-~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~-~~~~  248 (520)
                      |++|++++|..+..-.    + ..+++|++|.+.++........     +.       .-+.++|+|++|+++++ .+++
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~-----l~-------~l~~~~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD-----LS-------TLVRRCPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH-----HH-------HHHHHCTTCSEEECTTCTTCCG
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccccc-----cc-------ccccccccccccccccccCCCc
Confidence            9999999997653211    1 1257899999988752111000     00       01245778888888764 4555


Q ss_pred             hHHHHHHhCCcccceeeccccccccccc----cccccccEEEeecCCc---hhHHhcCCCCcc
Q 039643          249 QEFHELISKFPLLEDLSVSSSQPLERVK----FSSNLLKRVAFLFCRS---LRAVDLDTPNLL  304 (520)
Q Consensus       249 ~~~~~ll~~l~~L~~L~L~~~~~l~~~~----~~f~~L~~L~L~~c~~---l~~lL~~~P~L~  304 (520)
                      ..+ ..+.++++|++|.|++|..+.+.+    ...++|+.|++.+|-.   +..+...+|+|+
T Consensus       191 ~~~-~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         191 DCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             GGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             hhh-hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            433 345678999999999887653222    2357899999988732   235556788875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=4.3e-10  Score=105.13  Aligned_cols=178  Identities=17%  Similarity=0.115  Sum_probs=100.2

Q ss_pred             CCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEec
Q 039643          125 AKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVD  204 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~  204 (520)
                      +.+|+.|.+.+|.+...+....+++|++|+|+++.+.+-.   -+..++.|+.|.+.++..-..-.+.++++|+.+.+.+
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc---ccccccccccccccccccccccccccccccccccccc
Confidence            4566666666665533234556677777777666652211   0456667777766665421111234466666666666


Q ss_pred             ccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccc--c
Q 039643          205 YSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK--F  277 (520)
Q Consensus       205 ~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~--~  277 (520)
                      +...........+.++.+.+..     ...+..+++|+++.+.++.+++.   .-++++++|+.|+++++. +..+.  .
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~-l~~l~~l~  192 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNK-ISDISPLA  192 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC-CCCCGGGG
T ss_pred             ccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc---hhhcccccceecccCCCc-cCCChhhc
Confidence            5431111112344555555431     22356677788888777665432   125677888888887764 22221  2


Q ss_pred             ccccccEEEeecCCchh-HHhcCCCCccEeEec
Q 039643          278 SSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFE  309 (520)
Q Consensus       278 ~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~  309 (520)
                      .+++|++|+|++|.-.. ..+.++|+|+.|+++
T Consensus       193 ~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             CCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            35678888887753211 346788888888875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=3.8e-09  Score=105.33  Aligned_cols=177  Identities=16%  Similarity=0.124  Sum_probs=105.8

Q ss_pred             ccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccc
Q 039643          194 AHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSS  268 (520)
Q Consensus       194 ~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~  268 (520)
                      +++++.+.+.++....-......++|+.|.+.+     ...+..+++|+.+++..+.+++..   -++.+++|+.|.+++
T Consensus       196 l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~  272 (384)
T d2omza2         196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGA  272 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCS
T ss_pred             ccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC---cccccccCCEeeccC
Confidence            467777777766532111123467899998862     234577889999999887776521   267889999999987


Q ss_pred             ccccc-ccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccCC-CcE-EEEeccccccChhhHHH
Q 039643          269 SQPLE-RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQC-PWN-VFFVHEHDVGDIDNWYL  344 (520)
Q Consensus       269 ~~~l~-~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~-~L~-v~~~~~~~~g~~~~l~~  344 (520)
                      +.... +.......++.+.+..+.... ..+..+++++.|+++++.+..+  ..+... .++ +.+..+.+++-      
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L~~n~l~~l------  344 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDV------  344 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC--GGGGGCTTCCEEECCSSCCCCC------
T ss_pred             cccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC--cccccCCCCCEEECCCCCCCCC------
Confidence            66321 111234567777766543222 3457778888888888876654  112222 244 44555554421      


Q ss_pred             HHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643          345 KLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       345 ~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                        . .+.+++.|+.+.+.. +...+ ++      |.  ..++ .|+.|.+.
T Consensus       345 --~-~l~~l~~L~~L~l~~-N~l~~-l~------~l--~~l~-~L~~L~L~  381 (384)
T d2omza2         345 --S-SLANLTNINWLSAGH-NQISD-LT------PL--ANLT-RITQLGLN  381 (384)
T ss_dssp             --G-GGGGCTTCCEEECCS-SCCCB-CG------GG--TTCT-TCSEEECC
T ss_pred             --h-hHcCCCCCCEEECCC-CcCCC-Ch------hh--ccCC-CCCEeeCC
Confidence              2 256788999999874 33222 21      21  2345 77777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.88  E-value=8e-09  Score=96.22  Aligned_cols=179  Identities=17%  Similarity=0.154  Sum_probs=130.9

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|.+...     ..-.++ .+..+++|++|+|++|.+.....+..+++|+.|.+.++.+..  +. -+.+++.|+.
T Consensus        41 ~~L~~L~l~~~-----~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~  111 (227)
T d1h6ua2          41 DGITTLSAFGT-----GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKT  111 (227)
T ss_dssp             HTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCE
T ss_pred             CCcCEEECCCC-----CCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--cc-cccccccccc
Confidence            57888888653     123453 577899999999999977554558999999999999887732  11 1578999999


Q ss_pred             eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHH
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFH  252 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~  252 (520)
                      |.+.++.......+...+.++.+.+..+...........++|++|.+..     ...+.++++|++++++++.+++-   
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l---  188 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI---  188 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---
T ss_pred             cccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCC---
Confidence            9999886433333344788899998887643222235678999999863     34578899999999999887652   


Q ss_pred             HHHhCCcccceeeccccccccccc--cccccccEEEeec
Q 039643          253 ELISKFPLLEDLSVSSSQPLERVK--FSSNLLKRVAFLF  289 (520)
Q Consensus       253 ~ll~~l~~L~~L~L~~~~~l~~~~--~~f~~L~~L~L~~  289 (520)
                      ..++++++|+.|.|++|. +..+.  ..+++|+.|++++
T Consensus       189 ~~l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 SPLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             hhhcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            237899999999999986 43222  2467899998863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=5.3e-09  Score=95.67  Aligned_cols=78  Identities=12%  Similarity=0.114  Sum_probs=32.7

Q ss_pred             CCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecc
Q 039643          126 KLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDY  205 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~  205 (520)
                      ++|++|.++++.+........+++|++|+|+++.+.+-.  . ++++|.|+.|.+.++.....-.+.++++|+.|++.++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccccccccccccccccc
Confidence            344455555444322223344455555555554442100  0 3444555555555443211112333445555555444


Q ss_pred             c
Q 039643          206 S  206 (520)
Q Consensus       206 ~  206 (520)
                      .
T Consensus       117 ~  117 (199)
T d2omxa2         117 Q  117 (199)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.84  E-value=5.4e-09  Score=102.15  Aligned_cols=209  Identities=16%  Similarity=0.099  Sum_probs=124.2

Q ss_pred             CceEEEEEecCCCCCcccccCcccccCCCccEEEEecc-cc--CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643           99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGC-RL--DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL  175 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c-~l--~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L  175 (520)
                      +|.+|+|....  ......+|..+..+++|++|+|++| .+  ..|+.+.++++|++|+|+++.+.. .....+..++.|
T Consensus        51 ~v~~L~L~~~~--l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCC--CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTC
T ss_pred             EEEEEECCCCC--CCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc-cccccccchhhh
Confidence            58889887652  2345679999999999999999974 55  458889999999999999998732 112235678999


Q ss_pred             ceeeeeccCCcc--eeccccccccceEEEecccCC--CCceeeeCCce-eEEEecc-------ccccCCCCCcceEEecc
Q 039643          176 EDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRS--SELESIVAPSL-QQLTLVR-------VIVVATCPNLKKLHLSE  243 (520)
Q Consensus       176 E~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~--~~~~~i~aP~L-~~L~l~~-------~~~~~~l~~L~~L~L~~  243 (520)
                      +.+++.++....  .-.+.++++|+.++++++...  .+......+++ +.+.+..       +..+..+. +..+++..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~  206 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            999999875322  234666899999999888641  11111122232 4444321       11222222 22344443


Q ss_pred             cccchhHHHHHHhCCcccceeecccccccccc--ccccccccEEEeecCCchh---HHhcCCCCccEeEecccC
Q 039643          244 IVLEDQEFHELISKFPLLEDLSVSSSQPLERV--KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVR  312 (520)
Q Consensus       244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~--~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~  312 (520)
                      +...+. +...+..+++++.|.+..+......  .....+|+.|+|+++.-..   ..+.++|+|+.|+++++.
T Consensus       207 ~~~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         207 NMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             SEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            332221 2234556667777776665532111  1123466666666543221   344566666666666553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=1e-08  Score=94.58  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=36.4

Q ss_pred             CCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee-ccccccccceEEEec
Q 039643          126 KLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF-SVSKAHKLKNMVIVD  204 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l-~I~~~~~Lk~L~I~~  204 (520)
                      .+|++|.+++|.+........+++|++|+|+++.+++  +. -++.++.|+.|++.+|. ++.+ .+.++++|+.|++.+
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTT
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccc-cccccccccccccccccccc
Confidence            4555555555544332334455556666555555421  11 12445555555555553 1111 133355555555555


Q ss_pred             cc
Q 039643          205 YS  206 (520)
Q Consensus       205 ~~  206 (520)
                      +.
T Consensus       122 ~~  123 (210)
T d1h6ta2         122 NG  123 (210)
T ss_dssp             SC
T ss_pred             cc
Confidence            44

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=9.7e-09  Score=93.86  Aligned_cols=143  Identities=16%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecCh-HHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANE-QMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~-~~l~~Lls~CP~LE  176 (520)
                      .++++|++....     ...++ .+..+++|++|+|++|.+...+.+.++++|++|++..+.+.. ..    +++++.|+
T Consensus        40 ~~l~~L~l~~~~-----i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~----l~~l~~L~  109 (199)
T d2omxa2          40 DQVTTLQADRLG-----IKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLT  109 (199)
T ss_dssp             TTCCEEECTTSC-----CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----GTTCTTCS
T ss_pred             cCCCEEECCCCC-----CCCcc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccccc----cccccccc
Confidence            578888875531     22333 466789999999999988554558899999999999987732 22    67899999


Q ss_pred             eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHh
Q 039643          177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELIS  256 (520)
Q Consensus       177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~  256 (520)
                      .|++.++.......+.++++|+.|+++++....                 ...+..+++|+++++.++.+++-   .-++
T Consensus       110 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~l~~~~~L~~L~l~~n~l~~l---~~l~  169 (199)
T d2omxa2         110 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISD-----------------ISALSGLTSLQQLNFSSNQVTDL---KPLA  169 (199)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-----------------CGGGTTCTTCSEEECCSSCCCCC---GGGT
T ss_pred             cccccccccccccccchhhhhHHhhhhhhhhcc-----------------cccccccccccccccccccccCC---cccc
Confidence            999998865433335558999999998876311                 01245566667777766655431   1256


Q ss_pred             CCcccceeeccccc
Q 039643          257 KFPLLEDLSVSSSQ  270 (520)
Q Consensus       257 ~l~~L~~L~L~~~~  270 (520)
                      ++++|+.|+++++.
T Consensus       170 ~l~~L~~L~ls~N~  183 (199)
T d2omxa2         170 NLTTLERLDISSNK  183 (199)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCC
Confidence            67777777777764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=2.2e-08  Score=99.63  Aligned_cols=186  Identities=15%  Similarity=0.078  Sum_probs=99.9

Q ss_pred             cccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccce
Q 039643          120 QAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKN  199 (520)
Q Consensus       120 ~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~  199 (520)
                      .....++.+..|.++++.+.........++|++|++.++.+.+-  + -+..++.|+.|++.++.......+.++++|+.
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~  267 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTKLTE  267 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             cccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccccCCE
Confidence            33445566777777776553322345567777777777766221  1 24566777777777764222223445677777


Q ss_pred             EEEecccCCCCceeeeCCceeEEEec-----cccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-
Q 039643          200 MVIVDYSRSSELESIVAPSLQQLTLV-----RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-  273 (520)
Q Consensus       200 L~I~~~~~~~~~~~i~aP~L~~L~l~-----~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-  273 (520)
                      |+++++....-......+.++.+...     ....+..+++++.++++++.+++-   .-++.+++|++|.+++|..-. 
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l---~~l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC---GGGGGCTTCCEEECCSSCCCCC
T ss_pred             eeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC---cccccCCCCCEEECCCCCCCCC
Confidence            77766653111111234455555543     122345566777777776665542   125667777777777664211 


Q ss_pred             ccccccccccEEEeecCCchh-HHhcCCCCccEeEeccc
Q 039643          274 RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESV  311 (520)
Q Consensus       274 ~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~  311 (520)
                      +.-..+++|++|+++++.-.. ..+.++|+|++|+++++
T Consensus       345 ~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         345 SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             hhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            111124567777766532211 23566667777766543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=1.3e-08  Score=93.86  Aligned_cols=161  Identities=17%  Similarity=0.181  Sum_probs=101.0

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      ..+++|++...     ....++ .+..+++|++|+|++|.+...+....+++|+.|++.++.+.+  ++ -+.++|.|+.
T Consensus        46 ~~L~~L~l~~~-----~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~  116 (210)
T d1h6ta2          46 NSIDQIIANNS-----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKS  116 (210)
T ss_dssp             HTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCE
T ss_pred             cCccEEECcCC-----CCCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-cccccccccc
Confidence            36788877543     112233 466789999999999977543456889999999999998843  22 2577899999


Q ss_pred             eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhC
Q 039643          178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK  257 (520)
Q Consensus       178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~  257 (520)
                      |++.++.....-.+.++++|+.+.+.++.....                 ..+..+++|+.+.++++.+++-   .-+.+
T Consensus       117 L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~-----------------~~~~~l~~L~~l~l~~n~l~~i---~~l~~  176 (210)
T d1h6ta2         117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-----------------TVLSRLTKLDTLSLEDNQISDI---VPLAG  176 (210)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----------------GGGGGCTTCSEEECCSSCCCCC---GGGTT
T ss_pred             ccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccccccc---ccccC
Confidence            999998643322344578888888887753211                 1123455566666655554431   11455


Q ss_pred             Ccccceeeccccccccccc--cccccccEEEee
Q 039643          258 FPLLEDLSVSSSQPLERVK--FSSNLLKRVAFL  288 (520)
Q Consensus       258 l~~L~~L~L~~~~~l~~~~--~~f~~L~~L~L~  288 (520)
                      +++|+.|.++++.. ..+.  ..+++|++|+|+
T Consensus       177 l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         177 LTKLQNLYLSKNHI-SDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCEEECCCCCC-CCChhhcCCCCCCEEEcc
Confidence            66666666666542 2111  124566666664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.7e-08  Score=97.29  Aligned_cols=193  Identities=14%  Similarity=0.032  Sum_probs=115.4

Q ss_pred             cccCcccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcce---ec
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKF---FS  190 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~---l~  190 (520)
                      ..+|..+.  +++++|+|+++.+.. | ..+.++++|+.|+++++.+..- ......+++.++.+.+.....+..   ..
T Consensus        24 ~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          24 QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             SSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-ccccccccccccccccccccccccccchh
Confidence            35565543  467888898887743 3 3577888899999887765211 112345677888877765544332   23


Q ss_pred             cccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCccc
Q 039643          191 VSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLL  261 (520)
Q Consensus       191 I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L  261 (520)
                      +.++++|+.|++.++....  .......++|+.+.+..       ...+..+++|++|++.++.++. .....+.++++|
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l~~L  179 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSL  179 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cchhhhcccccc
Confidence            5557888888888876321  11122345666666641       1234566777777777766543 122456677777


Q ss_pred             ceeecccccccc--ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccC
Q 039643          262 EDLSVSSSQPLE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVR  312 (520)
Q Consensus       262 ~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~  312 (520)
                      +.|.++.+....  +.. ..+++|++|+++.+.-..   ..+..+++|+.|+++++.
T Consensus       180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            777777765422  111 123567777776643211   455677777777776664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=3.1e-08  Score=96.14  Aligned_cols=86  Identities=20%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             cccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceecccc
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSK  193 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~  193 (520)
                      ..+|..+.  +++++|+|+++.+.. |+ .+.++++|++|++.++.+.. .....+.+++.|+.|++.++. ++.+.-..
T Consensus        23 ~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~-i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~   98 (305)
T d1xkua_          23 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQ-LKELPEKM   98 (305)
T ss_dssp             CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSC-CSBCCSSC
T ss_pred             CccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccc-cchhhhhCCCccCEecccCCc-cCcCccch
Confidence            34565553  467777777776533 33 45667777777777665521 001224566777777776664 22211111


Q ss_pred             ccccceEEEecc
Q 039643          194 AHKLKNMVIVDY  205 (520)
Q Consensus       194 ~~~Lk~L~I~~~  205 (520)
                      .+.|+.|....+
T Consensus        99 ~~~l~~L~~~~n  110 (305)
T d1xkua_          99 PKTLQELRVHEN  110 (305)
T ss_dssp             CTTCCEEECCSS
T ss_pred             hhhhhhhhcccc
Confidence            345555555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.67  E-value=1.1e-08  Score=99.85  Aligned_cols=220  Identities=14%  Similarity=0.054  Sum_probs=122.3

Q ss_pred             CccEEEEeccccC----CCcccCCCCCCCEEEecce-ecChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccce
Q 039643          127 LLTTLVLNGCRLD----EPLIAINLNSLKNLSLQRV-YANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKN  199 (520)
Q Consensus       127 sL~~L~L~~c~l~----~p~~~~~l~sLk~L~L~~v-~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~  199 (520)
                      .++.|+|+++.+.    .|+.+.++++|++|+|+++ .+.+ .++.-++++++|++|+|+++...  ....+...++|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhcc
Confidence            5899999997653    4788899999999999864 4421 23344678899999999988532  1222334677888


Q ss_pred             EEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCccc-ceeeccccccccccccc
Q 039643          200 MVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLL-EDLSVSSSQPLERVKFS  278 (520)
Q Consensus       200 L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L-~~L~L~~~~~l~~~~~~  278 (520)
                      +++..+....     .          .+..+.++++|+.++++.+.+++.. ...+..++.+ +.+.++.+.........
T Consensus       130 l~l~~N~~~~-----~----------~p~~l~~l~~L~~l~l~~n~l~~~i-p~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         130 LDFSYNALSG-----T----------LPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             EECCSSEEES-----C----------CCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             cccccccccc-----c----------CchhhccCcccceeecccccccccc-cccccccccccccccccccccccccccc
Confidence            8877764210     0          1223566677777777666554321 1223344443 55655554421111112


Q ss_pred             cc--cccEEEeecCCch---hHHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHh
Q 039643          279 SN--LLKRVAFLFCRSL---RAVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLG  351 (520)
Q Consensus       279 f~--~L~~L~L~~c~~l---~~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~  351 (520)
                      +.  ++..+.+..+...   .......++|+.+.+.++.+... +..+.. ..++ +.+..+.+.|.+       +..+.
T Consensus       194 ~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~i-------P~~l~  265 (313)
T d1ogqa_         194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTL-------PQGLT  265 (313)
T ss_dssp             GGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECC-------CGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccCccCeecccC-------ChHHh
Confidence            22  2333444332211   14445667777777776655432 111111 1232 345566666654       23356


Q ss_pred             ccccccceEEEeccccccccc
Q 039643          352 ASNQIENLLINLRSVNIRQMP  372 (520)
Q Consensus       352 n~~~Le~L~i~~~~~~~~~i~  372 (520)
                      +++.|++|.+.. +...+.++
T Consensus       266 ~L~~L~~L~Ls~-N~l~g~iP  285 (313)
T d1ogqa_         266 QLKFLHSLNVSF-NNLCGEIP  285 (313)
T ss_dssp             GCTTCCEEECCS-SEEEEECC
T ss_pred             CCCCCCEEECcC-CcccccCC
Confidence            778888888774 44444454

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2e-08  Score=95.93  Aligned_cols=176  Identities=17%  Similarity=0.031  Sum_probs=96.3

Q ss_pred             cccCcccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eeccc
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVS  192 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~  192 (520)
                      ..+|..+.  ++|++|+|+++.+.. | ..+.++++|++|+|+++.+..  ++ ..+.+|.|+.|+|+++..-. ...+.
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~   97 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQSLPLLGQ   97 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCSSCCCCTT
T ss_pred             CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccccccccccccc
Confidence            45666553  478888888876643 3 456778888888888876632  11 12457778888887764211 11233


Q ss_pred             cccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccc
Q 039643          193 KAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPL  272 (520)
Q Consensus       193 ~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l  272 (520)
                      ++++|+.|+++++....  +             ....+..+++++++.+..+.++. .....+..+++++.|.++++..-
T Consensus        98 ~l~~L~~L~l~~~~~~~--~-------------~~~~~~~l~~l~~L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTS--L-------------PLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             TCTTCCEEECCSSCCCC--C-------------CSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccccccccce--e-------------eccccccccccccccccccccce-eccccccccccchhccccccccc
Confidence            46777777777665311  0             01123445555556555544432 12233455566666666655421


Q ss_pred             c--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643          273 E--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI  313 (520)
Q Consensus       273 ~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~  313 (520)
                      .  +. -..+.+|++|+|+++. +.   .-+...++|+.|.++++..
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCC
Confidence            1  11 1124556666665532 22   2234567778888877743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=2.5e-07  Score=89.46  Aligned_cols=208  Identities=13%  Similarity=0.065  Sum_probs=110.9

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS  174 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~  174 (520)
                      ++++.|++...     ....+|+ .+..+++|++|+++++.+..  |..+.+++.|++|+|.++.+..  ++  -..++.
T Consensus        31 ~~l~~L~Ls~N-----~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~--~~~~~~  101 (305)
T d1xkua_          31 PDTALLDLQNN-----KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKT  101 (305)
T ss_dssp             TTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTT
T ss_pred             CCCCEEECcCC-----cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Cc--cchhhh
Confidence            57888888664     3456776 46678999999999986633  4567889999999999887631  00  123466


Q ss_pred             cceeeeeccCC--cceeccccccccceEEEecccCCCC----ceeeeCCceeEEEeccc----cccCCCCCcceEEeccc
Q 039643          175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSE----LESIVAPSLQQLTLVRV----IVVATCPNLKKLHLSEI  244 (520)
Q Consensus       175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~----~~~i~aP~L~~L~l~~~----~~~~~l~~L~~L~L~~~  244 (520)
                      |+.|.+.++..  +..........+..+....+.....    ......++|+.+.+...    .....+++|++|+++++
T Consensus       102 l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n  181 (305)
T d1xkua_         102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN  181 (305)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred             hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCC
Confidence            77777666532  1111111233444444443321100    01122345555555421    11123456666666654


Q ss_pred             ccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCCC
Q 039643          245 VLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIPT  315 (520)
Q Consensus       245 ~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~~  315 (520)
                      ..+.. ....+.+++.++.|.++++....  +. ...+++|+.|+|+++.-..  .-+..+|+|+.|+++++.+..
T Consensus       182 ~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         182 KITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cCCCC-ChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCc
Confidence            43321 12335566666666666554311  11 1123466666666542211  234556666666666665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.7e-08  Score=95.03  Aligned_cols=168  Identities=18%  Similarity=0.158  Sum_probs=111.0

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE  176 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE  176 (520)
                      +++++|+|...     ....+|. .+..+++|++|+|+++.+...+....+++|++|+|+++.+..  +...+.+.+.|+
T Consensus        31 ~~l~~L~Ls~N-----~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSEN-----LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTS-----CCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCC
T ss_pred             cCCCEEECcCC-----cCCCcCHHHhhccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            57899988654     2345665 455789999999999977543446789999999999998732  122356789999


Q ss_pred             eeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHH
Q 039643          177 DLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHEL  254 (520)
Q Consensus       177 ~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l  254 (520)
                      .|+++++...  .......+++|+.|.+.++....  +             ....+..+++|+.++++++.++. .....
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~--l-------------~~~~~~~l~~l~~l~l~~N~l~~-~~~~~  167 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--L-------------PPGLLTPTPKLEKLSLANNNLTE-LPAGL  167 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--C-------------CTTTTTTCTTCCEEECTTSCCSC-CCTTT
T ss_pred             cccccccccceeeccccccccccccccccccccce--e-------------ccccccccccchhcccccccccc-cCccc
Confidence            9999988632  22233447888999888876310  0             01123556677777777766543 22244


Q ss_pred             HhCCcccceeecccccccccc--c-cccccccEEEeec
Q 039643          255 ISKFPLLEDLSVSSSQPLERV--K-FSSNLLKRVAFLF  289 (520)
Q Consensus       255 l~~l~~L~~L~L~~~~~l~~~--~-~~f~~L~~L~L~~  289 (520)
                      ++++++|+.|+|+++.. ..+  + ....+|++|.|.+
T Consensus       168 ~~~l~~L~~L~Ls~N~L-~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCS
T ss_pred             cccccccceeecccCCC-cccChhHCCCCCCCEEEecC
Confidence            66777778887777653 212  1 2345677777775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5e-07  Score=86.56  Aligned_cols=185  Identities=14%  Similarity=0.036  Sum_probs=124.4

Q ss_pred             CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee-cChHHHHHHHhcCC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY-ANEQMVHNLIAECC  173 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~CP  173 (520)
                      .++++|+|...     ....+|+ .+..++.|++|+++++.+..  +....+++.++.+...... +.. .-...+++++
T Consensus        32 ~~~~~L~Ls~N-----~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~-l~~~~~~~l~  105 (284)
T d1ozna_          32 AASQRIFLHGN-----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLG  105 (284)
T ss_dssp             TTCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCT
T ss_pred             CCCCEEECcCC-----cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc-ccchhhcccc
Confidence            56888988653     2345665 46678999999999976632  3455677888888765432 211 1112357889


Q ss_pred             CcceeeeeccCC--cceeccccccccceEEEecccCCC-Cceee-eCCceeEEEecc-------ccccCCCCCcceEEec
Q 039643          174 SLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS-ELESI-VAPSLQQLTLVR-------VIVVATCPNLKKLHLS  242 (520)
Q Consensus       174 ~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~-~~~~i-~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~  242 (520)
                      +|+.|++.++..  +........++|+.+++.++.... +...+ ..++|+.|.+..       ...+.++++|+.+.+.
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            999999998863  222233346889999999886421 11122 467899998752       2346788999999999


Q ss_pred             ccccchhHHHHHHhCCcccceeecccccccc--ccc-cccccccEEEeec
Q 039643          243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVK-FSSNLLKRVAFLF  289 (520)
Q Consensus       243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~  289 (520)
                      .+.+++ .....++++++|+.|+++.+....  +.. ....+|++|.+++
T Consensus       186 ~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         186 QNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             SSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hccccc-cChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            877764 223567889999999999877532  111 2356799999976

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.3e-07  Score=83.96  Aligned_cols=89  Identities=10%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             ccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceec---c
Q 039643          117 TLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFS---V  191 (520)
Q Consensus       117 ~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~---I  191 (520)
                      .+|..++  +++++|+|+++.+.. |+ .+.++++|++|+|+++.+....-...+.+++.+++|.+..+..+....   +
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            5666554  467888888876643 33 457788888888877754211001124567788888777765443322   3


Q ss_pred             ccccccceEEEecccC
Q 039643          192 SKAHKLKNMVIVDYSR  207 (520)
Q Consensus       192 ~~~~~Lk~L~I~~~~~  207 (520)
                      .++++|+.|.+.++..
T Consensus       100 ~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGI  115 (242)
T ss_dssp             ECCTTCCEEEEESCCC
T ss_pred             cccccccccccchhhh
Confidence            4467888888877753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=9.5e-07  Score=86.90  Aligned_cols=230  Identities=17%  Similarity=0.179  Sum_probs=139.4

Q ss_pred             CccHHHHHHHHH-hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-----C-------cccCCCCCCC
Q 039643           85 SSLVDKWIGLAV-GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-----P-------LIAINLNSLK  151 (520)
Q Consensus        85 ~~~v~~Wl~~a~-~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-----p-------~~~~~l~sLk  151 (520)
                      ..++..++.... ...+++|+|............+-..+...++|+.|+++++....     +       ......++|+
T Consensus        17 ~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~   96 (344)
T d2ca6a1          17 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   96 (344)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcc
Confidence            345666665444 36799988854310111223444556677899999998764321     1       1235678999


Q ss_pred             EEEecceecChHH---HHHHHhcCCCcceeeeeccCCc-----------ceec----cccccccceEEEecccCCCCce-
Q 039643          152 NLSLQRVYANEQM---VHNLIAECCSLEDLSLRYTLGL-----------KFFS----VSKAHKLKNMVIVDYSRSSELE-  212 (520)
Q Consensus       152 ~L~L~~v~~~~~~---l~~Lls~CP~LE~L~L~~c~~l-----------~~l~----I~~~~~Lk~L~I~~~~~~~~~~-  212 (520)
                      .|+|+++.+++..   +...+..++.|+.|.+.+|..-           ....    ..+.+.|+.+.+.++....... 
T Consensus        97 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~  176 (344)
T d2ca6a1          97 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  176 (344)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             cccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc
Confidence            9999999885443   5555678899999999888520           0000    1125788888888765321111 


Q ss_pred             -----eeeCCceeEEEecc------------ccccCCCCCcceEEecccccchhH---HHHHHhCCcccceeeccccccc
Q 039643          213 -----SIVAPSLQQLTLVR------------VIVVATCPNLKKLHLSEIVLEDQE---FHELISKFPLLEDLSVSSSQPL  272 (520)
Q Consensus       213 -----~i~aP~L~~L~l~~------------~~~~~~l~~L~~L~L~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~~l  272 (520)
                           .-..++|+.|.+..            ...+..+++|+.|+++.+.++...   +...+..+++|+.|.|++|..-
T Consensus       177 ~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence                 12356788887741            012456778888888877765532   3455677888888888887631


Q ss_pred             c----cc-----ccccccccEEEeecCCc-------hhHHh-cCCCCccEeEecccCCC
Q 039643          273 E----RV-----KFSSNLLKRVAFLFCRS-------LRAVD-LDTPNLLSFTFESVRIP  314 (520)
Q Consensus       273 ~----~~-----~~~f~~L~~L~L~~c~~-------l~~lL-~~~P~L~~L~l~~~~~~  314 (520)
                      .    .+     ...+.+|++|+++++.-       +...+ ...|+|+.|++.++.++
T Consensus       257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             chhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            0    11     11235688888876532       11333 35778888888777554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.7e-07  Score=79.79  Aligned_cols=127  Identities=13%  Similarity=0.064  Sum_probs=78.8

Q ss_pred             cccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceec---ccccccc
Q 039643          122 IYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFS---VSKAHKL  197 (520)
Q Consensus       122 l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~---I~~~~~L  197 (520)
                      +..+..|++|+|+++.+.. +.....++.|+.|+|+++.+..  ++ -++++|.|+.|++++|.- ..+.   ..++++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccc-cCCCcccccccccc
Confidence            3456678888888887643 4445678888888888887632  11 146678888888887752 2211   2236777


Q ss_pred             ceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeec
Q 039643          198 KNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSV  266 (520)
Q Consensus       198 k~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L  266 (520)
                      +.|++.++....  +    +        ....+..+++|++++++++.++..  .-...+..+|+|+.|+-
T Consensus        90 ~~L~L~~N~i~~--~----~--------~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          90 TELILTNNSLVE--L----G--------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEEECCSCCCCC--G----G--------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccceeccccccc--c----c--------cccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            777777775310  0    0        011346678888888887766431  12345677888887763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.18  E-value=4.7e-07  Score=89.16  Aligned_cols=197  Identities=14%  Similarity=0.152  Sum_probs=108.6

Q ss_pred             cccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEEecceecC------hHH---HHHHHhcCCCcceeee
Q 039643          116 YTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYAN------EQM---VHNLIAECCSLEDLSL  180 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~~------~~~---l~~Lls~CP~LE~L~L  180 (520)
                      ..+...+....+|+.|+|+++.+..      .......++|+.|++.++...      ...   +...+..|+.|+.|+|
T Consensus        21 ~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          21 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            3455666678899999999875522      224567899999999876531      122   3344678999999999


Q ss_pred             eccCC----ccee--ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh---HH
Q 039643          181 RYTLG----LKFF--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ---EF  251 (520)
Q Consensus       181 ~~c~~----l~~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~---~~  251 (520)
                      .+|..    +..+  .+..+++|+.|.+.++.........-+..|..+..  .......+.|+.+.++.+.++..   .+
T Consensus       101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~--~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV--NKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH--HHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             cccccccccccchhhhhcccccchheeccccccccccccccccccccccc--ccccccCcccceeecccccccccccccc
Confidence            98852    1111  12236899999998876421100000000000000  00012345566666655554432   23


Q ss_pred             HHHHhCCcccceeecccccccc--------ccccccccccEEEeecCCc-------hhHHhcCCCCccEeEecccCCC
Q 039643          252 HELISKFPLLEDLSVSSSQPLE--------RVKFSSNLLKRVAFLFCRS-------LRAVDLDTPNLLSFTFESVRIP  314 (520)
Q Consensus       252 ~~ll~~l~~L~~L~L~~~~~l~--------~~~~~f~~L~~L~L~~c~~-------l~~lL~~~P~L~~L~l~~~~~~  314 (520)
                      ...+..+++++.|.++.|..-.        ..-...++|++|+|+++.-       +...+..+|+|++|.+.++.+.
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3445556666676666654210        0111234566676665432       1145566777777777776554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.18  E-value=4.8e-07  Score=76.00  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             EEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCCC
Q 039643          130 TLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSS  209 (520)
Q Consensus       130 ~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~  209 (520)
                      +|+|+++.+...+....+++|++|+|+++.+..  ++.-++++++|+.|+++++.--..-.+.++++|+.|+++++....
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECCCCccCC
Confidence            344444444332334445555555555544421  111134445555555544421110113335555555555554210


Q ss_pred             CceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCccccee
Q 039643          210 ELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDL  264 (520)
Q Consensus       210 ~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L  264 (520)
                          +  |        ....+..+++|+.++++++.+++.  ....+...+|+|+.|
T Consensus        80 ----~--~--------~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          80 ----S--A--------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ----S--S--------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ----C--C--------CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                0  0        001234556666666665554321  122344445555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.17  E-value=4.7e-08  Score=89.35  Aligned_cols=146  Identities=18%  Similarity=0.214  Sum_probs=92.7

Q ss_pred             ceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceee
Q 039643          100 VKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLS  179 (520)
Q Consensus       100 VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~  179 (520)
                      ++++++...   ......+|.++..+++|++|+|+++.+...+.+.++++|++|+|+++.+..  ++.+...++.|+.|+
T Consensus        25 ~~~~~l~~~---~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          25 AEKVELHGM---IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELW   99 (198)
T ss_dssp             CSCEECCBC---CTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEE
T ss_pred             cceeeeecc---cCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccc
Confidence            556666543   123446778888899999999999877543457788999999999998732  222344457888888


Q ss_pred             eeccCCccee-ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh---------
Q 039643          180 LRYTLGLKFF-SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ---------  249 (520)
Q Consensus       180 L~~c~~l~~l-~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~---------  249 (520)
                      +.++. +..+ .+.++++|+.|+++++....  +    +        ....+..+++|+.|+++++.+...         
T Consensus       100 l~~N~-i~~l~~~~~l~~L~~L~L~~N~i~~--~----~--------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  164 (198)
T d1m9la_         100 ISYNQ-IASLSGIEKLVNLRVLYMSNNKITN--W----G--------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             CSEEE-CCCHHHHHHHHHSSEEEESEEECCC--H----H--------HHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHH
T ss_pred             ccccc-ccccccccccccccccccccchhcc--c----c--------ccccccCCCccceeecCCCccccCcccccchhh
Confidence            88874 2222 23447788888888775310  0    0        001246677888888876554321         


Q ss_pred             HHHHHHhCCcccceee
Q 039643          250 EFHELISKFPLLEDLS  265 (520)
Q Consensus       250 ~~~~ll~~l~~L~~L~  265 (520)
                      .-..++..+|+|+.|+
T Consensus       165 ~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         165 YRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHCSSCCEES
T ss_pred             HHHHHHHHCCCcCEeC
Confidence            1123466777777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.1e-06  Score=75.46  Aligned_cols=102  Identities=13%  Similarity=0.001  Sum_probs=74.7

Q ss_pred             CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCccee
Q 039643           99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDL  178 (520)
Q Consensus        99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L  178 (520)
                      ++++|+|...     ....+|.....++.|++|+|+++.+..-+.+..+++|++|+|+++.+.. ....+..++|.|+.|
T Consensus        19 ~lr~L~L~~n-----~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          19 RDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTEL   92 (162)
T ss_dssp             SCEEEECTTS-----CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEE
T ss_pred             cCcEEECCCC-----CCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccC-CCccccccccccccc
Confidence            5788887654     2345565556689999999999977443457889999999999998732 111245678999999


Q ss_pred             eeeccCC--cce-eccccccccceEEEeccc
Q 039643          179 SLRYTLG--LKF-FSVSKAHKLKNMVIVDYS  206 (520)
Q Consensus       179 ~L~~c~~--l~~-l~I~~~~~Lk~L~I~~~~  206 (520)
                      ++.+|.-  +.. -.+.++++|+.|++.++.
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             eeccccccccccccccccccccchhhcCCCc
Confidence            9999852  222 234568999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.2e-05  Score=78.55  Aligned_cols=343  Identities=14%  Similarity=0.051  Sum_probs=173.9

Q ss_pred             HHHHHHH-HhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC------Cccc-CCCCCCCEEEecceec
Q 039643           89 DKWIGLA-VGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE------PLIA-INLNSLKNLSLQRVYA  160 (520)
Q Consensus        89 ~~Wl~~a-~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~-~~l~sLk~L~L~~v~~  160 (520)
                      ..|.... .-++++.|+|....-.......++..+..+++|++|+|++|.+..      ...+ ....+|++|+|+++.+
T Consensus        17 ~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   96 (460)
T d1z7xw1          17 ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   96 (460)
T ss_dssp             HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCc
Confidence            4555543 348899999977521111223566677789999999999986631      1111 1335799999999998


Q ss_pred             ChHH---HHHHHhcCCCcceeeeeccCC----cce--------------ec-----------------cccccccceEEE
Q 039643          161 NEQM---VHNLIAECCSLEDLSLRYTLG----LKF--------------FS-----------------VSKAHKLKNMVI  202 (520)
Q Consensus       161 ~~~~---l~~Lls~CP~LE~L~L~~c~~----l~~--------------l~-----------------I~~~~~Lk~L~I  202 (520)
                      ++..   +...+..|+.|++|++.++.-    ...              ..                 +...+.++.+.+
T Consensus        97 t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  176 (460)
T d1z7xw1          97 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV  176 (460)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccc
Confidence            5544   445567899999999988741    000              00                 011245555555


Q ss_pred             ecccCCCCc-------eeeeCCceeEEEeccc-----------cccCCCCCcceEEecccccchh----HHHHHHhCCcc
Q 039643          203 VDYSRSSEL-------ESIVAPSLQQLTLVRV-----------IVVATCPNLKKLHLSEIVLEDQ----EFHELISKFPL  260 (520)
Q Consensus       203 ~~~~~~~~~-------~~i~aP~L~~L~l~~~-----------~~~~~l~~L~~L~L~~~~~~~~----~~~~ll~~l~~  260 (520)
                      ..+......       ..........+.....           ..+...+.++.+.+..+.+...    ...........
T Consensus       177 s~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~  256 (460)
T d1z7xw1         177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR  256 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccc
Confidence            544321000       0001112333333210           0123456677777766554332    22334455667


Q ss_pred             cceeecccccccc-c---c---ccccccccEEEeecCCch----h----HHhcCCCCccEeEecccCCCCccccc----c
Q 039643          261 LEDLSVSSSQPLE-R---V---KFSSNLLKRVAFLFCRSL----R----AVDLDTPNLLSFTFESVRIPTISISA----S  321 (520)
Q Consensus       261 L~~L~L~~~~~l~-~---~---~~~f~~L~~L~L~~c~~l----~----~lL~~~P~L~~L~l~~~~~~~~~~~~----l  321 (520)
                      ++.|.++++.... .   .   -.....++.+.++++.-.    .    .+....+.|+.+.+..+.+.......    .
T Consensus       257 l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~  336 (460)
T d1z7xw1         257 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL  336 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccccc
Confidence            7788777765311 0   0   012345677776653221    1    22234557777777766544210000    1


Q ss_pred             c-CCCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEecccccc----ccccccccccccCCCCcccccceEEE
Q 039643          322 H-QCPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIR----QMPFDLEEFKNRSPSLPFQVGNMRLI  395 (520)
Q Consensus       322 ~-~~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~----~i~~~L~~~p~asp~l~~~l~~L~l~  395 (520)
                      . ...++ +.+..+.+..+  ....+++.+..+.+.|++|.+.. ++...    .+.+.+       ...+ .|++|.+.
T Consensus       337 ~~~~~L~~L~Ls~N~i~~~--g~~~l~~~l~~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l-------~~~~-~L~~L~Ls  405 (460)
T d1z7xw1         337 AQNRFLLELQISNNRLEDA--GVRELCQGLGQPGSVLRVLWLAD-CDVSDSSCSSLAATL-------LANH-SLRELDLS  405 (460)
T ss_dssp             HHCSSCCEEECCSSBCHHH--HHHHHHHHHTSTTCCCCEEECTT-SCCCHHHHHHHHHHH-------HHCC-CCCEEECC
T ss_pred             ccccchhhhheeeecccCc--ccchhhhhhhcccCCCCEEECCC-CCCChHHHHHHHHHH-------hcCC-CCCEEECC
Confidence            1 11232 44444444322  22233444445667788888874 22211    122222       1225 78888887


Q ss_pred             EeeecchhhHHHHHHhHhhh-ccCCceecCCCCccchHHHHHHHHHHHhcc
Q 039643          396 VGMEVPIQEYKNLMDGIFWI-CYPKNLYLPKQFNASSQFIEWLLELLWNRN  445 (520)
Q Consensus       396 ~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~  445 (520)
                      . ...+......+.+.+-.- +.=+.|.+... ..+.++.+.+-+ +.+++
T Consensus       406 ~-N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~-~~~~~~~~~l~~-l~~~~  453 (460)
T d1z7xw1         406 N-NCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQA-LEKDK  453 (460)
T ss_dssp             S-SSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHH-HHHHC
T ss_pred             C-CcCCHHHHHHHHHHHHhCCCccCEEECCCC-CCCHHHHHHHHH-HHHhC
Confidence            3 443434444555544211 23356666532 335566666555 44443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.1e-05  Score=72.65  Aligned_cols=166  Identities=14%  Similarity=0.070  Sum_probs=90.2

Q ss_pred             CCceEEEEEecCCCCCcccccCcc-cccCCCccEEEEeccccC-C--CcccCCCCCCCEEEeccee-cChHHHHHHHhcC
Q 039643           98 NGVKELHIVVESSPHESAYTLPQA-IYSAKLLTTLVLNGCRLD-E--PLIAINLNSLKNLSLQRVY-ANEQMVHNLIAEC  172 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~-l~~~~sL~~L~L~~c~l~-~--p~~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~C  172 (520)
                      +++++|++...     ....+|.. +..+++|++|+|+++.+. .  +..+.+++.++.|.+..+. +.. .....+.++
T Consensus        29 ~~l~~L~Ls~n-----~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l  102 (242)
T d1xwdc1          29 RNAIELRFVLT-----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNL  102 (242)
T ss_dssp             SCCSEEEEESC-----CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECC
T ss_pred             CCCCEEECcCC-----cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-ccccccccc
Confidence            58999999764     23467764 456899999999998542 2  3346789999999886542 211 111235789


Q ss_pred             CCcceeeeeccCCcceeccccccccceEEEecccCC-CCce---ee--eCCceeEEEeccc------cccCCCCCcceEE
Q 039643          173 CSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRS-SELE---SI--VAPSLQQLTLVRV------IVVATCPNLKKLH  240 (520)
Q Consensus       173 P~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~-~~~~---~i--~aP~L~~L~l~~~------~~~~~l~~L~~L~  240 (520)
                      |.|+.|.+.++............+++.+.+...... ...+   .+  -.+.++.+.+...      ....+.+++.++.
T Consensus       103 ~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~  182 (242)
T d1xwdc1         103 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN  182 (242)
T ss_dssp             TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEE
T ss_pred             ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccc
Confidence            999999999985222111222445555544332210 0100   01  1234555554310      1112234444443


Q ss_pred             e-cccccchhHHHHHHhCCcccceeeccccc
Q 039643          241 L-SEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       241 L-~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      . .++.++. .....++++++|+.|+|+++.
T Consensus       183 ~l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         183 LSDNNNLEE-LPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             CTTCTTCCC-CCTTTTTTSCCCSEEECTTSC
T ss_pred             ccccccccc-ccHHHhcCCCCCCEEECCCCc
Confidence            2 3344432 122345667777777776655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=9.2e-06  Score=67.86  Aligned_cols=82  Identities=21%  Similarity=0.138  Sum_probs=50.9

Q ss_pred             cccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cce-ecccccccc
Q 039643          122 IYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKF-FSVSKAHKL  197 (520)
Q Consensus       122 l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~-l~I~~~~~L  197 (520)
                      +..+++|++|+|+++.+.. |+.+..+++|++|+++++.+..  ++. +..+|.|+.|++.++.-  +.. ..+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            5566777777777776633 5556677777777777776632  111 45677777777777642  211 123446777


Q ss_pred             ceEEEeccc
Q 039643          198 KNMVIVDYS  206 (520)
Q Consensus       198 k~L~I~~~~  206 (520)
                      +.|+++++.
T Consensus        93 ~~L~l~~N~  101 (124)
T d1dcea3          93 VLLNLQGNS  101 (124)
T ss_dssp             CEEECTTSG
T ss_pred             CEEECCCCc
Confidence            777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.73  E-value=7.5e-05  Score=71.95  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=38.6

Q ss_pred             CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643           98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED  177 (520)
Q Consensus        98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~  177 (520)
                      .++++|++...     ....+|..   ..+|+.|++.++.+..-+  .-.++|++|+|+++.+..  ++. .+.++.|+.
T Consensus        58 ~~L~~L~Ls~N-----~l~~lp~~---~~~L~~L~l~~n~l~~l~--~lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~~  124 (353)
T d1jl5a_          58 PHLESLVASCN-----SLTELPEL---PQSLKSLLVDNNNLKALS--DLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKI  124 (353)
T ss_dssp             TTCSEEECCSS-----CCSSCCCC---CTTCCEEECCSSCCSCCC--SCCTTCCEEECCSSCCSS--CCC-CTTCTTCCE
T ss_pred             CCCCEEECCCC-----CCcccccc---hhhhhhhhhhhcccchhh--hhcccccccccccccccc--ccc-hhhhcccee
Confidence            35777766543     22355544   246777777766543211  111357777777666521  111 244566777


Q ss_pred             eeeeccC
Q 039643          178 LSLRYTL  184 (520)
Q Consensus       178 L~L~~c~  184 (520)
                      |++.++.
T Consensus       125 L~l~~~~  131 (353)
T d1jl5a_         125 IDVDNNS  131 (353)
T ss_dssp             EECCSSC
T ss_pred             ecccccc
Confidence            7666553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.63  E-value=1.1e-05  Score=72.26  Aligned_cols=115  Identities=20%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             ccccCcccccCCCccEEEEeccccC--C-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--ccee
Q 039643          115 AYTLPQAIYSAKLLTTLVLNGCRLD--E-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFF  189 (520)
Q Consensus       115 ~~~LP~~l~~~~sL~~L~L~~c~l~--~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l  189 (520)
                      ...+|..+.  +++++|+|+++.+.  . +..+.++++|+.|+|.++.+.. .....+.+.+.|+.|+|+++.-  +..-
T Consensus        20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~-~~~~~~~~~~~L~~L~Ls~N~l~~l~~~   96 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc-ccccccccccccceeeeccccccccCHH
Confidence            345666654  57788888887662  2 3345677888888887776521 1112244567777777776642  1111


Q ss_pred             ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccc
Q 039643          190 SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLE  247 (520)
Q Consensus       190 ~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~  247 (520)
                      .+.++++|+.|+++++...    .+.           +..|..+++|++++|+++.+.
T Consensus        97 ~F~~l~~L~~L~L~~N~l~----~i~-----------~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQIS----CVM-----------PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCC----EEC-----------TTSSTTCTTCCEEECTTCCBC
T ss_pred             HHhCCCcccccccCCcccc----ccC-----------HHHhcCCcccccccccccccc
Confidence            2344666666666666421    010           123456667777777665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.59  E-value=2.9e-05  Score=69.47  Aligned_cols=126  Identities=16%  Similarity=0.060  Sum_probs=85.8

Q ss_pred             ccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccceEEEec
Q 039643          128 LTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKNMVIVD  204 (520)
Q Consensus       128 L~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~  204 (520)
                      .++++.++..+. +|+..  .+++++|+|+++.++...-...+.+.+.|+.|+|.++...  ..-.+.+.++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            356666666553 35432  3789999999987732222223567899999999887532  222344578999999998


Q ss_pred             ccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643          205 YSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP  271 (520)
Q Consensus       205 ~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~  271 (520)
                      +...    .+.           +..|.++++|++|+|+++.++. .....+.++++|+.|.|++++.
T Consensus        88 N~l~----~l~-----------~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIK----EIS-----------NKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCC----EEC-----------SSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccc----ccC-----------HHHHhCCCcccccccCCccccc-cCHHHhcCCccccccccccccc
Confidence            8631    111           2346789999999999888764 2335678899999999988764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.50  E-value=0.00048  Score=65.98  Aligned_cols=132  Identities=20%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             HHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcC-
Q 039643           95 AVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAEC-  172 (520)
Q Consensus        95 a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C-  172 (520)
                      +...++++|++...     ....+|+.   .++|++|+|+++.+.. |.   .+.+|+.|++.++.++.      +... 
T Consensus        35 c~~~~l~~LdLs~~-----~L~~lp~~---~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~l~~n~l~~------l~~lp   97 (353)
T d1jl5a_          35 CLDRQAHELELNNL-----GLSSLPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA------LSDLP   97 (353)
T ss_dssp             HHHHTCSEEECTTS-----CCSCCCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC------CCSCC
T ss_pred             HHHcCCCEEEeCCC-----CCCCCCCC---CCCCCEEECCCCCCccccc---chhhhhhhhhhhcccch------hhhhc
Confidence            34468899988653     23467764   4689999999987754 43   46799999999887632      2233 


Q ss_pred             CCcceeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEec-----cccccCCCCCcceEEecccc
Q 039643          173 CSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLV-----RVIVVATCPNLKKLHLSEIV  245 (520)
Q Consensus       173 P~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~-----~~~~~~~l~~L~~L~L~~~~  245 (520)
                      +.|+.|++.++.-..--.+..+++|+.|++.++...  ......+.+..+.+.     ....+..++.++.+.+..+.
T Consensus        98 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK--KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccchhhhccceeecccccccc--ccccccccccchhhccccccccccccccccceeccccccc
Confidence            469999999885221112344789999999887632  122224556666653     12335567777777776543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.20  E-value=3.3e-05  Score=69.82  Aligned_cols=122  Identities=19%  Similarity=0.193  Sum_probs=76.7

Q ss_pred             ccEEEEecc--ccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceec--cccccccceEEE
Q 039643          128 LTTLVLNGC--RLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFS--VSKAHKLKNMVI  202 (520)
Q Consensus       128 L~~L~L~~c--~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~--I~~~~~Lk~L~I  202 (520)
                      ++.+.+.+.  .+. .+..+..+++|+.|+|+++.+.+  ++. ++++++|+.|+|++|. +..+.  ....++|+.|++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccc
Confidence            444555542  221 23456778888999998887732  111 4567888888888874 22111  112456777777


Q ss_pred             ecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643          203 VDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       203 ~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~  270 (520)
                      .++...  .               ...+..+++|+.|+++++.++.-.....++++++|+.|.+++++
T Consensus       101 ~~N~i~--~---------------l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         101 SYNQIA--S---------------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEECC--C---------------HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccc--c---------------cccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            776521  0               11245678899999988887653223457889999999998876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00031  Score=69.85  Aligned_cols=118  Identities=18%  Similarity=0.205  Sum_probs=75.2

Q ss_pred             CCccEEEEeccccCC---CcccCCCCCCCEEEecceecChHHHH---HHHhcCCCcceeeeeccCC----cceec--c-c
Q 039643          126 KLLTTLVLNGCRLDE---PLIAINLNSLKNLSLQRVYANEQMVH---NLIAECCSLEDLSLRYTLG----LKFFS--V-S  192 (520)
Q Consensus       126 ~sL~~L~L~~c~l~~---p~~~~~l~sLk~L~L~~v~~~~~~l~---~Lls~CP~LE~L~L~~c~~----l~~l~--I-~  192 (520)
                      ..|++|++++..+..   ..-+..+++||+|.|.+|.+++..+.   ..+..||.|++|+|+++.-    +..+.  + .
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            368899998876632   22355678999999999988665544   4568899999999988752    11110  0 1


Q ss_pred             cccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHH
Q 039643          193 KAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHEL  254 (520)
Q Consensus       193 ~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l  254 (520)
                      ...+|++|++++|.........    +       ...+..+++|++++++++.+++..+..+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~----l-------~~~l~~~~~L~~L~L~~N~i~~~~~~~l  132 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGV----L-------SSTLRTLPTLQELHLSDNLLGDAGLQLL  132 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHH----H-------HHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             CCCCCCEEECCCCCcccccccc----c-------cchhhccccccccccccccchhhhhhhh
Confidence            1357888888887631111000    0       1124678899999999888766544333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0026  Score=54.40  Aligned_cols=37  Identities=8%  Similarity=-0.053  Sum_probs=17.6

Q ss_pred             hcCCCcceeeeeccCC--cceeccccccccceEEEeccc
Q 039643          170 AECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYS  206 (520)
Q Consensus       170 s~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~  206 (520)
                      .+.+.|+.|+|+++.-  +..-.+.++++|++|+++++.
T Consensus        53 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          53 RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             ccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            3445555555554431  111123345666666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0026  Score=54.50  Aligned_cols=68  Identities=18%  Similarity=0.139  Sum_probs=44.5

Q ss_pred             cccCcccccCCCccEEEEecc-ccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC
Q 039643          116 YTLPQAIYSAKLLTTLVLNGC-RLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL  184 (520)
Q Consensus       116 ~~LP~~l~~~~sL~~L~L~~c-~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~  184 (520)
                      ...|..+...++|++|.|.++ .+..  +..+.++++|+.|+|+++.+.. .-...+.+.+.|+.|+|+++.
T Consensus        21 ~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC
T ss_pred             ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-cccccccccccccceeccCCC
Confidence            455666667778888888764 3532  3456778888888888776621 001234667888888887765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.43  E-value=0.0021  Score=55.73  Aligned_cols=96  Identities=9%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCCCcceeeeeccCCcce-----e--ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCC
Q 039643          163 QMVHNLIAECCSLEDLSLRYTLGLKF-----F--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPN  235 (520)
Q Consensus       163 ~~l~~Lls~CP~LE~L~L~~c~~l~~-----l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~  235 (520)
                      +.++++..++|.|++|+|.++..+..     +  .+...++|++|++++|........    .+       ...+...+.
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~----~l-------a~~L~~n~~   73 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR----GL-------IELIETSPS   73 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT----TH-------HHHHHHCSS
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH----HH-------hhhhhhccc
Confidence            45666666677777777765532211     1  122245666666666542110000    00       001234556


Q ss_pred             cceEEecccccchhHHH---HHHhCCcccceeecccc
Q 039643          236 LKKLHLSEIVLEDQEFH---ELISKFPLLEDLSVSSS  269 (520)
Q Consensus       236 L~~L~L~~~~~~~~~~~---~ll~~l~~L~~L~L~~~  269 (520)
                      |++|+|+++.+++....   ..+...++|+.|.|+++
T Consensus        74 L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          74 LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             ccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            77777777666654433   33444556666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.39  E-value=0.018  Score=49.39  Aligned_cols=112  Identities=14%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             CCCCCEEEeccee-cChHHHHHH---HhcCCCcceeeeeccCC----ccee--ccccccccceEEEecccCCCCceeeeC
Q 039643          147 LNSLKNLSLQRVY-ANEQMVHNL---IAECCSLEDLSLRYTLG----LKFF--SVSKAHKLKNMVIVDYSRSSELESIVA  216 (520)
Q Consensus       147 l~sLk~L~L~~v~-~~~~~l~~L---ls~CP~LE~L~L~~c~~----l~~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~a  216 (520)
                      .|.|++|+|+++. ++++.+..+   +..++.|+.|+|++|..    ...+  .+...++|+.|++++|.........  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~--   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR--   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH--
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH--
Confidence            4556666666542 444443333   44566666666666631    1111  1222456666666666532110000  


Q ss_pred             CceeEEEeccccccCCCCCcceEEecccc---cchh---HHHHHHhCCcccceeecccc
Q 039643          217 PSLQQLTLVRVIVVATCPNLKKLHLSEIV---LEDQ---EFHELISKFPLLEDLSVSSS  269 (520)
Q Consensus       217 P~L~~L~l~~~~~~~~l~~L~~L~L~~~~---~~~~---~~~~ll~~l~~L~~L~L~~~  269 (520)
                        |       ...+...++|++|+++++.   ++..   .+...+...++|+.|.++..
T Consensus        92 --l-------~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 --L-------LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             --H-------HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             --H-------HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence              0       0123445666777765432   2222   24556666777777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.16  E-value=0.0082  Score=51.47  Aligned_cols=15  Identities=20%  Similarity=0.348  Sum_probs=7.9

Q ss_pred             HHhcCCCCccEeEec
Q 039643          295 AVDLDTPNLLSFTFE  309 (520)
Q Consensus       295 ~lL~~~P~L~~L~l~  309 (520)
                      ..+...++|+.|+++
T Consensus       126 ~~L~~n~~L~~L~l~  140 (166)
T d1io0a_         126 NMLEKNTTLLKFGYH  140 (166)
T ss_dssp             HHHHHCSSCCEEECC
T ss_pred             HHHHhCCCcCEEeCc
Confidence            344455566666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.0081  Score=51.49  Aligned_cols=57  Identities=26%  Similarity=0.218  Sum_probs=26.2

Q ss_pred             CCCccEEEEeccccCC----CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeecc
Q 039643          125 AKLLTTLVLNGCRLDE----PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYT  183 (520)
Q Consensus       125 ~~sL~~L~L~~c~l~~----p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c  183 (520)
                      +++|++|+|++|.+..    +..+..+++|+.|+|+++.+ +-..+..+  +.+.|+.|++.++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~N  125 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGN  125 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCC
Confidence            4555556665554422    11123455555555555555 22233221  2234555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.21  E-value=0.04  Score=46.83  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=55.3

Q ss_pred             CCCCCCEEEecce-ecChHHHHHH---HhcCCCcceeeeeccCC----ccee--ccccccccceEEEecccCCCCceeee
Q 039643          146 NLNSLKNLSLQRV-YANEQMVHNL---IAECCSLEDLSLRYTLG----LKFF--SVSKAHKLKNMVIVDYSRSSELESIV  215 (520)
Q Consensus       146 ~l~sLk~L~L~~v-~~~~~~l~~L---ls~CP~LE~L~L~~c~~----l~~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~  215 (520)
                      +-|.|++|+|+++ .+++..+..+   +..++.|++|+|++|.-    ...+  .+...++|+.+++.++....+.... 
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~-   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA-   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH-
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH-
Confidence            3456666666653 3444444333   33566666666666631    0000  1122456666666555421110000 


Q ss_pred             CCceeEEEeccccccCCCCCcceEEec--ccccchh---HHHHHHhCCcccceeeccccc
Q 039643          216 APSLQQLTLVRVIVVATCPNLKKLHLS--EIVLEDQ---EFHELISKFPLLEDLSVSSSQ  270 (520)
Q Consensus       216 aP~L~~L~l~~~~~~~~l~~L~~L~L~--~~~~~~~---~~~~ll~~l~~L~~L~L~~~~  270 (520)
                                -...+...++|+.++|+  .+.+++.   .+...+...++|+.|.++...
T Consensus        94 ----------l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 ----------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             ----------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ----------HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                      00123455667666654  3444443   244556677778888776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.017  Score=49.39  Aligned_cols=13  Identities=31%  Similarity=0.465  Sum_probs=10.1

Q ss_pred             HHhcCCCCccEeE
Q 039643          295 AVDLDTPNLLSFT  307 (520)
Q Consensus       295 ~lL~~~P~L~~L~  307 (520)
                      .++..+|+|+.|+
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            5667889998775