Score = 121 (47.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/79 (39%), Positives = 41/79 (51%)
Query: 26 EGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDA 85
+GV + G +E KIL AL F+A L R F R K +E R+ + ++G LP F
Sbjct: 9 QGVNVLGTVNESQRKILTPPALAFLALLHRSFNERRKQLLERRKLRQAEIDKGVLPDFLP 68
Query: 86 ATRYIREGE-WTCALVPPP 103
TR+IRE W A P P
Sbjct: 69 ETRHIRENSTWKGA-APAP 86
Score = 115 (45.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 23 DVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPG 82
D +GV+I G E I N++ L FVA L R F R + + R+E ++ ++G LP
Sbjct: 10 DKIKGVQILGPVPESAKHIFNQETLAFVATLHRGFEARRQELLNNRKEQQKLRDQGFLPD 69
Query: 83 FDAATRYIR-EGEWT 96
F T YIR + WT
Sbjct: 70 FLPETEYIRNDATWT 84
Score = 115 (45.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 23 DVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPG 82
D +GV+I G E I N++ L FVA L R F R + + R+E ++ ++G LP
Sbjct: 10 DKIKGVQILGPVPESAKHIFNQETLAFVATLHRGFEARRQELLNNRKEQQKLRDQGFLPD 69
Query: 83 FDAATRYIR-EGEWT 96
F T YIR + WT
Sbjct: 70 FLPETEYIRNDATWT 84
Score = 99 (39.9 bits), Expect = 0.00029, P = 0.00029
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 28 VEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAAT 87
V I G S E KIL K+A F+A L R F K ++ R + + ++G LP F T
Sbjct: 11 VAILGSVSNEARKILTKEACAFLAILHRTFNPTRKALLQRRVDRQAEIDKGHLPDFLPET 70
Query: 88 RYIREG-EWTCALVPP 102
++IR+ W A PP
Sbjct: 71 KHIRDDPSWKGA--PP 84
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 103 103 0.00091 102 3 11 22 0.40 30
29 0.49 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 561 (60 KB)
Total size of DFA: 117 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.65u 0.10s 11.75t Elapsed: 00:00:01
Total cpu time: 11.65u 0.10s 11.75t Elapsed: 00:00:01
Start: Sat May 11 11:30:01 2013 End: Sat May 11 11:30:02 2013
Score = 83.5 bits (207), Expect = 3e-20
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 41 ILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALV 100
IL +AL F+A+L R F R K + R+E + R + G LP F T +IR+G+W A V
Sbjct: 1 ILTPEALDFLAELHRRFNPRRKELLAARKERQARLDAGELPDFLPETAHIRDGDWKVAPV 60
Query: 101 PP 102
PP
Sbjct: 61 PP 62
Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle. Length = 511
Score = 73.4 bits (181), Expect = 1e-16
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 23 DVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPG 82
P+G+ I G + +IL +AL F+A+L R F R + + R E + R + G LP
Sbjct: 4 TTPQGLAITGPPGPGYEEILTPEALAFLAELHRRFEPRRRELLAARAERQARIDAGELPD 63
Query: 83 FDAATRYIREGEWTCALVPP 102
F T IREG+W A +P
Sbjct: 64 FLPETASIREGDWKVAPIPA 83
Length = 531
>gnl|CDD|238267 cd00480, malate_synt, Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA
Score = 61.1 bits (149), Expect = 2e-12
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 46 ALQFVADLQREFRNRLKYAMECRREAKRRYNEG-ALPGFDAATRYIRE-GEWTCALVPPP 103
AL FVA+L REF R + + R E + R + G ALP F T YIR G+W A PP
Sbjct: 1 ALAFVAELHREFNPRRRELLAARDERQARLDAGHALPDFLPETAYIRRDGDWKVAPDPPD 60
This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle. Length = 511
>gnl|CDD|188132 TIGR01344, malate_syn_A, malate synthase A
Score = 53.7 bits (129), Expect = 7e-10
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 41 ILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALV 100
+L +AL+F+A L R F R + R + + + G LP F T IRE +WT A +
Sbjct: 1 VLTPEALEFLALLHRRFNPRRDQLLARRSNRQAKIDSGYLPDFLPETAQIREDDWTIAPI 60
Query: 101 PP 102
PP
Sbjct: 61 PP 62
This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis [Energy metabolism, TCA cycle]. Length = 511
This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi
Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
>KOG1261 consensus Malate synthase [Energy production and conversion]
3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA
This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
>COG2225 AceB Malate synthase [Energy production and conversion]
Atomic Resolution Structures Of Escherichia Coli An
5e-04
>pdb|3CUX|A Chain A, Atomic Resolution Structures Of Escherichia Coli And Bacillis Anthracis Malate Synthase A: Comparison With Isoform G And Implications For Structure Based Drug Design Length = 528
>pdb|3CV2|A Chain A, Atomic Resolution Structures Of Escherichia Coli And Bacillis Anthracis Malate Synthase A: Comparison With Isoform G And Implications For Structure Based Drug Design Length = 532
>pdb|3CUZ|A Chain A, Atomic Resolution Structures Of Escherichia Coli And Bacillis Anthracis Malate Synthase A: Comparison With Isoform G And Implications For Structure Based Drug Design Length = 532
