Citrus Sinensis ID: 039722

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MELTKKRRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEFEQSVQPDYNEGD
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHcccccHHcccccccccccHHHHHHHHHHcccccEEEcccccccccEEEEcccccEEEEEEcccccEEEcEEEEEEccEEcccEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccEEEEEEEEEHHHHHEEEHHEEcccccccccccEEEEEEcHHHHcHHHHHHHHHcccccEEEEEcccHHHHHHHcccccccccccccccccEEEEEEEEEEEccccEEEEEEcccccEEEEccccccEEEEEEccccEEEEccEEEEEEEEccccEEEEEEcEEEEcHHHHHHccccccccc
Coil and Loop (DISEMBL)
meltkkrrchilknSICFVLVVVSVCCLSILIFSMlrlpdislgstsihgevyrREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQvndslvgdnvnNTYAILSRILgfsavprtlssiMVPFGEEISYDSLSGLTLYISkssdgkllVNRVEserldlkkgKIVIHIMDGVimdaefeqsvqpdynegd
Flexible Loop (DISEMBL)
meltkkrrchilknsiCFVLVVVSVCCLSILIFSMLrlpdislgstsihgevyRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQvndslvgdnVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISkssdgkllvnrveserldlkkgkiVIHIMDGVIMDAefeqsvqpdynegd
Low Complexity Region (SEG)
MELTKKRRCHILKNsicfvlvvvsvcclsiliFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEFEQSVQPDYNEGD
Disordered region (IsUnstruct)
*******RCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE*************
Disordered Region (DISOPRED)
*********HILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE*************
Disordered Region (DISEMBL)
MELTKKRRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEFEQS*********
Disordered Region (DISPRO)
******RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEFEQSV********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELTKKRRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEFEQSVQPDYNEGD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
P74615	180	Uncharacterized protein s	N/A	no	0.551	0.6	0.310	0.0003

>sp|P74615|Y1483_SYNY3 Uncharacterized protein sll1483 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1483 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 65  MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSS 124
           ++E L  +  FT+F P+  AF       V   L+ +N +     L +IL +  VP  +++
Sbjct: 70  LVEALSAEGPFTVFAPTNDAFAALPAGTVESLLLPENKDK----LVKILTYHVVPGKITA 125

Query: 125 IMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
             V  GE     SL+G  L   K  DGK+ VN+      D+     VIH++D VI+
Sbjct: 126 AQVQSGE---VASLAGEALTF-KVKDGKVKVNKATVISADVDASNGVIHVIDQVIL 177

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
225449202	193	PREDICTED: uncharacterized protein LOC10	0.959	0.974	0.606	3e-59
255571837	197	conserved hypothetical protein [Ricinus	0.938	0.934	0.570	1e-58
449441324	198	PREDICTED: uncharacterized protein LOC10	0.959	0.949	0.556	2e-56
224112565	135	fasciclin-like domain-containing protein	0.688	1.0	0.711	3e-51
357492581	200	Fasciclin-like domain-containing protein	0.969	0.95	0.492	2e-49
224098523	179	fasciclin domain-containing protein [Pop	0.867	0.949	0.533	1e-48
15228748	204	Fasciclin-like arabinogalactan family pr	0.923	0.887	0.463	1e-39
297816908	202	hypothetical protein ARALYDRAFT_907015 [	0.908	0.881	0.443	8e-38
356553796	182	PREDICTED: uncharacterized protein LOC10	0.836	0.901	0.468	2e-37
357120250	223	PREDICTED: uncharacterized protein LOC10	0.75	0.659	0.445	4e-28

>gi|225449202|ref|XP_002279437.1| PREDICTED: uncharacterized protein LOC100244380 [Vitis vinifera]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 145/188 (77%)

Query: 7   RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRREEIGKFAEMMI 66
           RR   +K+SI FV V+V+VC L ++I +MLRLP++S    S   E +  E IGKF EMM+
Sbjct: 2   RRGWCMKDSIAFVCVMVTVCSLMVVIVTMLRLPEVSTRQNSAIREGFNDESIGKFGEMML 61

Query: 67  EMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIM 126
           EMLP+DLAFTIFVPS KAF R+L+LQVN SL  + +N+TYA+LSR+LGFSAVPR L S  
Sbjct: 62  EMLPQDLAFTIFVPSEKAFQRDLRLQVNRSLAAEQMNDTYAVLSRVLGFSAVPRPLYSKT 121

Query: 127 VPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEFEQ 186
           + FG+E+ +DSLSG  L I K SDG ++VNRV S R+D++KG+IV+HIMDGVIMD EFEQ
Sbjct: 122 MLFGKEMCFDSLSGFELCIWKESDGAIIVNRVRSARMDMRKGEIVVHIMDGVIMDFEFEQ 181

Query: 187 SVQPDYNE 194
           S Q DY+E
Sbjct: 182 SFQLDYSE 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571837|ref|XP_002526861.1| conserved hypothetical protein [Ricinus communis] gi|223533760|gb|EEF35492.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/191 (57%), Positives = 150/191 (78%), Gaps = 7/191 (3%)

Query: 11  ILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHG-------EVYRREEIGKFAE 63
           + KN I FV VVVSVCC  +++ S+LRLP++++G+  I         ++ + E IGKF +
Sbjct: 6   LWKNPIAFVGVVVSVCCFLVIMISVLRLPEVTVGNKVIRPYRTFKSRKISKDEGIGKFGD 65

Query: 64  MMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLS 123
           +MIEMLPEDLAFT+FVPS KAF+R+L+L+ NDSL+ +  N+TYA++SRILGFSA+PRTL 
Sbjct: 66  LMIEMLPEDLAFTVFVPSEKAFERDLRLRANDSLLAEKRNDTYAVVSRILGFSAIPRTLL 125

Query: 124 SIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE 183
           S  V   +E+ YDSLSG  LY+SK +DG L+VNR+ SER+D+++ ++++H+MDGVIMDAE
Sbjct: 126 SAAVYSNKELFYDSLSGFPLYVSKDADGMLIVNRIRSERVDVRRREVIVHVMDGVIMDAE 185

Query: 184 FEQSVQPDYNE 194
           FEQSVQPDY E
Sbjct: 186 FEQSVQPDYTE 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441324|ref|XP_004138432.1| PREDICTED: uncharacterized protein LOC101206202 [Cucumis sativus] gi|449517874|ref|XP_004165969.1| PREDICTED: uncharacterized protein LOC101225787 [Cucumis sativus]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/196 (55%), Positives = 151/196 (77%), Gaps = 8/196 (4%)

Query: 7   RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLG-------STSIHGEVYRREEIG 59
           +R  ILKN I FV +++S+CC+ I++ + LRLP++++G         S+  +V + +E+G
Sbjct: 2   KRSFILKNPIAFVFMILSLCCVLIVLITTLRLPELTVGVKAGARDKVSLIRKVLKDDELG 61

Query: 60  KFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVG-DNVNNTYAILSRILGFSAV 118
           KF EMMIEMLPEDLAFT+F+PS KAF+REL L+VN+S    + +++TYA++SRILGFSAV
Sbjct: 62  KFGEMMIEMLPEDLAFTVFIPSEKAFERELSLRVNESFTSTEKMDDTYAVISRILGFSAV 121

Query: 119 PRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGV 178
           PRT+ S +V +G EI YD++SG TL ISK  +G+L+VN V SE +DLKK  +++HIMDGV
Sbjct: 122 PRTIYSTLVDYGSEIIYDAVSGFTLNISKDRNGRLVVNGVRSEMVDLKKKDVLVHIMDGV 181

Query: 179 IMDAEFEQSVQPDYNE 194
           IMDA FEQSV+PD NE
Sbjct: 182 IMDASFEQSVKPDDNE 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112565|ref|XP_002316229.1| fasciclin-like domain-containing protein [Populus trichocarpa] gi|222865269|gb|EEF02400.1| fasciclin-like domain-containing protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 118/135 (87%)

Query: 58  IGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSA 117
           IG+F EMMIEMLPEDLAFT+FVPS KAF R+L+L++NDSLV +  N+TYA++SRILGFSA
Sbjct: 1   IGRFGEMMIEMLPEDLAFTVFVPSEKAFQRDLRLRLNDSLVAEKRNDTYAVVSRILGFSA 60

Query: 118 VPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDG 177
           VP+TLSS  V   +E+ YDSLSG TLYISK  DG L+VNR+ SE++DL++G+IV+HIMDG
Sbjct: 61  VPQTLSSATVSSSKEVFYDSLSGFTLYISKDLDGMLVVNRIRSEKVDLRRGQIVVHIMDG 120

Query: 178 VIMDAEFEQSVQPDY 192
           VIMDAEFEQ+VQPDY
Sbjct: 121 VIMDAEFEQAVQPDY 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492581|ref|XP_003616579.1| Fasciclin-like domain-containing protein [Medicago truncatula] gi|355517914|gb|AES99537.1| Fasciclin-like domain-containing protein [Medicago truncatula]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 142/199 (71%), Gaps = 9/199 (4%)

Query: 7   RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHG--EVYRREEI------ 58
           ++ H LK+SI  + ++++VCC+ I+  +   LP+    +    G   + R  +I      
Sbjct: 2   KKHHFLKHSIALITILLTVCCIFIIAITFFNLPEPQNKTNRKMGFDSITRSRKISIQDFN 61

Query: 59  -GKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSA 117
            GKF EMM+EMLP+DLAFT+FVPS +AF R+L+L VNDSL  D  N+TYAI+SR+LGFS 
Sbjct: 62  LGKFGEMMVEMLPQDLAFTVFVPSEEAFKRDLRLSVNDSLKQDKFNDTYAIVSRVLGFSV 121

Query: 118 VPRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDG 177
           VPRTL S+ + FGE +SYDSLSG  L++SK  DG ++VNR++S+ +D++K +IV+H++DG
Sbjct: 122 VPRTLCSVDLRFGEVVSYDSLSGFPLFVSKDVDGMIVVNRIKSKIVDVRKNEIVVHVLDG 181

Query: 178 VIMDAEFEQSVQPDYNEGD 196
           VIMDA+FEQSV  +  + D
Sbjct: 182 VIMDADFEQSVLSEETQED 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098523|ref|XP_002311206.1| fasciclin domain-containing protein [Populus trichocarpa] gi|222851026|gb|EEE88573.1| fasciclin domain-containing protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 138/195 (70%), Gaps = 25/195 (12%)

Query: 7   RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISL-----GS--TSIHGEVYRREEIG 59
           RR   +KNSI FV VV+S+CCLS+++ S+ +LP+ SL     GS  T    +V + E IG
Sbjct: 2   RRGCFVKNSIAFVGVVISICCLSVIMVSVFQLPEASLINKVTGSYRTIRTRKVSKDEAIG 61

Query: 60  KFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVP 119
           KF EMMIEMLPE+LAFT+FVPS +AF+R+L+LQV+DSLV +  N+TYA++SRILGFSAVP
Sbjct: 62  KFGEMMIEMLPEELAFTVFVPSHEAFERDLRLQVDDSLVAEKRNDTYAVVSRILGFSAVP 121

Query: 120 RTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVI 179
           RTL S  VP                     DG L+VNR+ SE++DL++ +IV+H+MD V+
Sbjct: 122 RTLFSTTVP------------------SDGDGMLVVNRIRSEKVDLRRREIVVHVMDEVL 163

Query: 180 MDAEFEQSVQPDYNE 194
           MD EFEQ+VQPDY +
Sbjct: 164 MDGEFEQAVQPDYTK 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228748|ref|NP_191141.1| Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana] gi|7263570|emb|CAB81607.1| putative protein [Arabidopsis thaliana] gi|60547813|gb|AAX23870.1| hypothetical protein At3g55820 [Arabidopsis thaliana] gi|71905505|gb|AAZ52730.1| hypothetical protein At3g55820 [Arabidopsis thaliana] gi|149944339|gb|ABR46212.1| At3g55820 [Arabidopsis thaliana] gi|332645924|gb|AEE79445.1| Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 131/192 (68%), Gaps = 11/192 (5%)

Query: 7   RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRRE---EIGKFAE 63
           ++ H LKN + F+ ++++V  L+ILIFS L+LP+  L + + H    R E   E+G F +
Sbjct: 2   KKPHFLKNPVFFLFLLITVSSLTILIFSFLKLPETPLAAGN-HLRKLRYELTDELGLFGK 60

Query: 64  MMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLV------GDNVNNTYAILSRILGFSA 117
           MMIEMLPEDL FT FVPS K+F R+L L++N S         D+ +NTYA++SRI+ F+ 
Sbjct: 61  MMIEMLPEDLVFTAFVPSEKSFSRDLGLKLNTSRPIKSHEEDDDGDNTYAVVSRIMSFAV 120

Query: 118 VPRTLSSIMVPFGEEISYDSLSGLTLYI-SKSSDGKLLVNRVESERLDLKKGKIVIHIMD 176
           VP  +  + +   E  SY+SLSG TL I  K + G L+VN VE+E++ LK+GKI++HIM+
Sbjct: 121 VPYKVEEVDIGNDETASYESLSGFTLQIWRKRNGGGLVVNGVETEKMGLKRGKIIVHIMN 180

Query: 177 GVIMDAEFEQSV 188
           GV+MD++F QS+
Sbjct: 181 GVVMDSDFAQSI 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816908|ref|XP_002876337.1| hypothetical protein ARALYDRAFT_907015 [Arabidopsis lyrata subsp. lyrata] gi|297322175|gb|EFH52596.1| hypothetical protein ARALYDRAFT_907015 [Arabidopsis lyrata subsp. lyrata]

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 129/194 (66%), Gaps = 16/194 (8%)

Query: 7   RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSIHGEVYRR------EEIGK 60
           ++ H LKN + F+ ++++   L+ILIFS L+LP+    +T   G   R+      +E+G 
Sbjct: 2   KKPHFLKNPVFFLFLLITASSLTILIFSFLKLPE----TTPATGNHLRKFGDDLSDELGF 57

Query: 61  FAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLV-----GDNVNNTYAILSRILGF 115
           F +MMIEMLPEDL FT FVPS K+F R+L L++N S        D+ +NTYA++SRI+ F
Sbjct: 58  FGKMMIEMLPEDLVFTAFVPSEKSFSRDLGLKLNKSRPIKSPEDDDGDNTYAVVSRIMSF 117

Query: 116 SAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSD-GKLLVNRVESERLDLKKGKIVIHI 174
           + VP  +  + +   E  SY+SLSG TL I K  + G L+VN V++E++ LK+GKI+ HI
Sbjct: 118 AVVPYKVEEVDIGKEETASYESLSGFTLKIWKKRNGGGLVVNGVKTEKMGLKRGKIIAHI 177

Query: 175 MDGVIMDAEFEQSV 188
           M+GV+MD++F QS+
Sbjct: 178 MNGVVMDSDFAQSL 191

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553796|ref|XP_003545238.1| PREDICTED: uncharacterized protein LOC100779091 [Glycine max]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 121/190 (63%), Gaps = 26/190 (13%)

Query: 7   RRCHILKNSICFVLVVVSVCCLSILIFSMLRLPDISLGSTSI--HGEVYRRE------EI 58
           R+  +LK+SI  V ++V VCC  I+  ++ +LP+       +  +  +  R+       +
Sbjct: 2   RKRQVLKHSIAIVSMLVCVCCFFIVSVTVFKLPEAPRKDRQMGFYPTIRSRKVSLQDFNL 61

Query: 59  GKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAV 118
           GKF EMMI+MLP+DLAFT+FVPS  AF R+L+L V+DSL  D  N+TYAI++RILGFSAV
Sbjct: 62  GKFGEMMIDMLPQDLAFTVFVPSEDAFKRDLRLSVSDSLKPDKFNDTYAIVTRILGFSAV 121

Query: 119 PRTLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGV 178
           PR LSS  V                      DG L+VNR+ SE +D++K +IV+H+MDGV
Sbjct: 122 PRILSSANV------------------QSDIDGMLVVNRIRSEIVDVRKKEIVVHVMDGV 163

Query: 179 IMDAEFEQSV 188
           IMDAEFEQSV
Sbjct: 164 IMDAEFEQSV 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357120250|ref|XP_003561841.1| PREDICTED: uncharacterized protein LOC100826626 [Brachypodium distachyon]

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 102/157 (64%), Gaps = 10/157 (6%)

Query: 48  IHGEVYRREEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQV-NDSLVGDNV---- 102
           +H     ++++G+F EMM+ MLP DLAFT FVPS ++F R L L+  NDS+  D      
Sbjct: 67  LHCRGASQQQLGEFGEMMVSMLPRDLAFTAFVPSPESFRRVLNLRPPNDSVARDGTKKKA 126

Query: 103 ---NNTYAILSRILGFSAVPRTLSSIMVPFGEEISY-DSLSGLTLYISKSS-DGKLLVNR 157
              + TYA++SR+LGFSA+PR L S  VP  E     DS+SGL +Y  +   DG L+VN 
Sbjct: 127 ASDDATYAVVSRVLGFSAIPRALRSADVPLREPARLLDSVSGLRIYAWRDEVDGALVVNG 186

Query: 158 VESERLDLKKGKIVIHIMDGVIMDAEFEQSVQPDYNE 194
           V SE +D+ +G+ V+H+M GV+MDAEF++S   ++ +
Sbjct: 187 VRSECVDIVRGETVVHVMAGVLMDAEFQRSFAYEFED 223

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2078971	204	AT3G55820 "AT3G55820" [Arabido	0.923	0.887	0.432	2e-33
UNIPROTKB|Q0C5W5	194	HNE_0144 "Fasciclin domain pro	0.520	0.525	0.271	2.8e-06
UNIPROTKB|P74615	180	sll1483 "Uncharacterized prote	0.551	0.6	0.310	0.00016

TAIR|locus:2078971 AT3G55820 "AT3G55820" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 83/192 (43%), Positives = 118/192 (61%)

Query:     7 RRCHILKNXXXXXXXXXXXXXXXXXXFSMLRLPDISLGSTSIHGEVYRRE---EIGKFAE 63
             ++ H LKN                  FS L+LP+  L + + H    R E   E+G F +
Sbjct:     2 KKPHFLKNPVFFLFLLITVSSLTILIFSFLKLPETPLAAGN-HLRKLRYELTDELGLFGK 60

Query:    64 MMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLV------GDNVNNTYAILSRILGFSA 117
             MMIEMLPEDL FT FVPS K+F R+L L++N S         D+ +NTYA++SRI+ F+ 
Sbjct:    61 MMIEMLPEDLVFTAFVPSEKSFSRDLGLKLNTSRPIKSHEEDDDGDNTYAVVSRIMSFAV 120

Query:   118 VPRTLSSIMVPFGEEISYDSLSGLTLYI-SKSSDGKLLVNRVESERLDLKKGKIVIHIMD 176
             VP  +  + +   E  SY+SLSG TL I  K + G L+VN VE+E++ LK+GKI++HIM+
Sbjct:   121 VPYKVEEVDIGNDETASYESLSGFTLQIWRKRNGGGLVVNGVETEKMGLKRGKIIVHIMN 180

Query:   177 GVIMDAEFEQSV 188
             GV+MD++F QS+
Sbjct:   181 GVVMDSDFAQSI 192

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q0C5W5 HNE_0144 "Fasciclin domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 119 (46.9 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/107 (27%), Positives = 61/107 (57%)

Query:    75 FTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEI- 133
             +T+F P+ +AF      Q+++ L+ +N ++    L+RI+ +  VP  + +  VP  +   
Sbjct:    87 YTVFAPTNEAFAALAPGQLDELLLPENKDD----LTRIVSYHVVPGIVMAADVPAEDAAT 142

Query:   134 SYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
             S  S++ L L + + +DG ++VN+      D++    V+H++DGV++
Sbjct:   143 STASVNNLDLSVRRMADGSVMVNQYTVTSSDIQASNGVVHVIDGVLI 189

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P74615 sll1483 "Uncharacterized protein sll1483" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
 Identities = 36/116 (31%), Positives = 56/116 (48%)

Query:    65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSS 124
             ++E L  +  FT+F P+  AF       V   L+ +N +     L +IL +  VP  +++
Sbjct:    70 LVEALSAEGPFTVFAPTNDAFAALPAGTVESLLLPENKDK----LVKILTYHVVPGKITA 125

Query:   125 IMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
               V  GE  S   L+G  L   K  DGK+ VN+      D+     VIH++D VI+
Sbjct:   126 AQVQSGEVAS---LAGEALTF-KVKDGKVKVNKATVISADVDASNGVIHVIDQVIL 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       178   0.00086  109 3  11 22  0.42    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.69u 0.11s 16.80t   Elapsed:  00:00:01
  Total cpu time:  16.69u 0.11s 16.80t   Elapsed:  00:00:01
  Start:  Sat May 11 13:36:05 2013   End:  Sat May 11 13:36:06 2013

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam02469	123	pfam02469, Fasciclin, Fasciclin domain	6e-06
smart00554	97	smart00554, FAS1, Four repeated domains in the Fas	7e-05
COG2335	187	COG2335, COG2335, Secreted and surface protein con	6e-04

>gnl|CDD|217054 pfam02469, Fasciclin, Fasciclin domain

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 75  FTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEIS 134
           FT+F P+ +AF + L     + L+ D        L  +L +  VP  L+S  +  G  + 
Sbjct: 26  FTVFAPTDEAFAK-LPAGTLNFLLKDK-----EQLKNLLKYHVVPGRLTSSDLKNGGTL- 78

Query: 135 YDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
             +L G  L ++  + G + VN     + D++    VIH++D V++
Sbjct: 79  -ATLQGSKLRVNV-TGGTVTVNGARVVQSDIEATNGVIHVIDKVLL 122

This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria. Length = 123

>gnl|CDD|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 12/106 (11%)

Query: 76  TIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISY 135
           T+F P+ +AF  +L   +N SL+ D        L  +L +  VP  LSS  +  G  +  
Sbjct: 1   TVFAPTDEAFQ-KLPPDLN-SLLADK-------LKNLLLYHVVPGRLSSADLLNGGTLP- 50

Query: 136 DSLSGLTLYISKSSD-GKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
            +L+G  L I++S   G + VN       D+     V+H++D V++
Sbjct: 51  -TLAGSKLRITRSGGSGTVTVNGARIVEADIAATNGVVHVIDRVLL 95

Length = 97

>gnl|CDD|225214 COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 75  FTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEIS 134
           FT+F P+ +AF  +L     D+L+     N    L++IL +  V   +++  +     + 
Sbjct: 82  FTVFAPTNEAFA-KLPAGTLDALL--KPENKPL-LTKILTYHVVEGKITAADLKSSGSV- 136

Query: 135 YDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
             ++ G  L I K + G + VN       D+     VIH++D V++
Sbjct: 137 -KTVQGADLKI-KVTGGGVYVNDATVTIADINASNGVIHVIDKVLI 180

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
COG2335	187	Secreted and surface protein containing fasciclin-	100.0
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	99.95
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.93
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	98.86
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	98.83

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.3e-40  Score=280.24  Aligned_cols=124  Identities=23%  Similarity=0.358  Sum_probs=115.7

Q ss_pred             hhhhcCchhHH--------HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeecc
Q 039722           54 RREEIGKFAEM--------MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSI  125 (196)
Q Consensus        54 ~a~~~G~F~tl--------Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aa  125 (196)
                      .+.+.|+|.|+        |+++|.+.||||||||||+||++||++|++.|++|||    +++|++||+||||+|+++++
T Consensus        53 ~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen----~~~L~~iLtYHVv~Gk~~~~  128 (187)
T COG2335          53 SAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPEN----KPLLTKILTYHVVEGKITAA  128 (187)
T ss_pred             HHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccc----hhhhheeeEEEEEcCcccHH
Confidence            46689999999        9999999999999999999999999999999999997    56899999999999999999


Q ss_pred             ccCCCccceeecccCcEEEEEEeCCCcEEEcceeeeeeccccCCcEEEEecccccChhh
Q 039722          126 MVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEF  184 (196)
Q Consensus       126 dv~~g~~~~~~Tv~G~~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~ef  184 (196)
                      |+....  +++|++|..+.|..+ +|+++||+|+|+++||.++||||||||+|||||+.
T Consensus       129 ~l~~~~--~v~t~~G~~~~i~~~-~~~~~Vn~a~v~~~di~a~NgvIhvID~Vl~Pp~~  184 (187)
T COG2335         129 DLKSSG--SVKTVQGADLKIKVT-GGGVYVNDATVTIADINASNGVIHVIDKVLIPPMD  184 (187)
T ss_pred             Hhhccc--cceeecCceEEEEEc-CCcEEEeeeEEEeccEeccCcEEEEEeeeccCCCc
Confidence            998543  689999999999987 56699999999999999999999999999999974

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=99.95  E-value=2.9e-28  Score=176.61  Aligned_cols=98  Identities=30%  Similarity=0.441  Sum_probs=87.8

Q ss_pred             EEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEEEEEeCC-CcEE
Q 039722           76 TIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSD-GKLL  154 (196)
Q Consensus        76 TVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~V~~~~~-G~v~  154 (196)
                      |+|||+|+||++++....+.+.. +     + .|+++|.||++||+++++++..+.  .+.|++|++|.++...+ +.++
T Consensus         1 TvfaP~d~Af~~~~~~~~~~l~~-~-----~-~l~~ll~~Hiv~~~~~~~~l~~~~--~~~Tl~g~~l~v~~~~~~~~i~   71 (99)
T smart00554        1 TVFAPTDEAFQKLPPGTLNSLLA-D-----P-KLKNLLLYHVVPGRLSSADLLNGG--TLPTLAGSKLRVTRSGDSGTVT   71 (99)
T ss_pred             CEeCcCHHHHHhcCHHHHHHHhC-C-----H-HHHHHHHhcEeCceEcHHHhccCC--ccccCCCCEEEEEEeCCCCeEE
Confidence            89999999999998877766642 2     3 799999999999999999998754  68999999999998744 7899


Q ss_pred             EcceeeeeeccccCCcEEEEecccccCh
Q 039722          155 VNRVESERLDLKKGKIVIHIMDGVIMDA  182 (196)
Q Consensus       155 Vn~a~V~~aDI~asNGVIHVID~VlmP~  182 (196)
                      ||+++++.+||.++|||||+||+||+||
T Consensus        72 in~~~v~~~di~~~nGvih~Id~vL~P~   99 (99)
T smart00554       72 VNGARIVEADIAATNGVVHVIDRVLLPP   99 (99)
T ss_pred             EcceEEEECCEecCCeEEEEECceeCCC
Confidence            9999999999999999999999999996

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=99.93  E-value=1.5e-26  Score=172.64  Aligned_cols=110  Identities=26%  Similarity=0.449  Sum_probs=92.7

Q ss_pred             HHHhc-CCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeec-ccCcE
Q 039722           65 MIEML-PEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDS-LSGLT  142 (196)
Q Consensus        65 Lvd~L-~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~T-v~G~~  142 (196)
                      |.+.| ...++||+|||+|+||++++..+.+.+..      .++.|.++|.||+|||.++.+++..+.. .++| ++|+.
T Consensus        15 l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~------~~~~l~~~l~~hiv~~~~~~~~l~~~~~-~~~t~~~g~~   87 (128)
T PF02469_consen   15 LADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLAD------SKEQLKSLLKYHIVPGSITSSDLRNGKQ-TLETLLNGQP   87 (128)
T ss_dssp             CHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHT------HHHHHHHHHHHTEEES---HCHHHCHHE-EEEBSSTTCE
T ss_pred             CHHHHhcCCCCEEEEEECHHHHHhccccccchhhh------hhhhHhhhhhhEEEcCceehhhhccccc-cceeccCCCE
Confidence            56677 77799999999999999998888777753      2679999999999999999999987621 5888 99999


Q ss_pred             EEEEEe-CCCcEEEcc-eeeeeeccccCCcEEEEecccccC
Q 039722          143 LYISKS-SDGKLLVNR-VESERLDLKKGKIVIHIMDGVIMD  181 (196)
Q Consensus       143 L~V~~~-~~G~v~Vn~-a~V~~aDI~asNGVIHVID~VlmP  181 (196)
                      +.+... .+|.+.||+ ++|+..|+.++||+||+||+||+|
T Consensus        88 ~~v~~~~~~~~~~v~~~a~i~~~~~~~~nG~ih~id~vL~P  128 (128)
T PF02469_consen   88 LRVSSSPSNGTIYVNGKARIVKSDIEASNGVIHIIDDVLIP  128 (128)
T ss_dssp             EEEEEEGGTTEEEECCEEEESEEEEEESSEEEEEESS-TSS
T ss_pred             EEEEEEecCCceEecCceEEEeCCEEeCCEEEEEECceECc
Confidence            999886 479999999 999999999999999999999998

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.86  E-value=2.2e-09  Score=105.18  Aligned_cols=109  Identities=24%  Similarity=0.303  Sum_probs=80.2

Q ss_pred             HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccce---eecccCc
Q 039722           65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEIS---YDSLSGL  141 (196)
Q Consensus        65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~---~~Tv~G~  141 (196)
                      +-++|..++-||+||||++||.+-..+...  +.      .+-.|..+|.||+||+... -++......+   -.+.+|.
T Consensus       532 l~e~l~~~~~~t~fvPt~ka~~~~~~~~~~--~~------~~~~l~~~l~yH~v~~~~~-ls~~~~~~v~~~~k~s~~~~  602 (682)
T KOG1437|consen  532 LPEELTPEGNYTLFVPTNKAWQKSTKDEKS--LF------HKKALQDFLKYHLVPGQSR-LSLGSSPYVMIQVKLSLRGD  602 (682)
T ss_pred             ChhhhccCCceEEEeecccccccCCcchhh--cc------hHHHHHHHHHhccccceee-eecccccceeeeeeEEEecc
Confidence            455567888999999999999999776554  21      1347999999999999984 2222211101   2455666


Q ss_pred             EEEEEEeCCCcEEEcceeeeeeccccCCcEEEEecccccChh
Q 039722          142 TLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE  183 (196)
Q Consensus       142 ~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~e  183 (196)
                      .+-++.- ....-||-.+.+-.||...|||+|+||.|+-|+.
T Consensus       603 ~~~~~~~-~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~  643 (682)
T KOG1437|consen  603 HLFFSLV-NPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPD  643 (682)
T ss_pred             cEEeeee-ccccceeeeeeeccceeeecceeEEEEEEcccCc
Confidence            6666542 3455678888999999999999999999999984

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.83  E-value=2.6e-09  Score=104.79  Aligned_cols=102  Identities=21%  Similarity=0.246  Sum_probs=78.5

Q ss_pred             HHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEEE
Q 039722           66 IEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYI  145 (196)
Q Consensus        66 vd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~V  145 (196)
                      .+.|..++-+|.|+|+|.||+++++.-       .     .+.+..||.||++|-++.+++.-+|.. .++|+.|..+-.
T Consensus       398 l~~L~~n~e~t~~lp~n~~fd~~~~~~-------~-----r~l~~qIL~~HII~~~~~~~~~y~~~~-~v~t~g~~~l~~  464 (682)
T KOG1437|consen  398 LTALAPNDEATLLLPTNNLFDDLTPLE-------S-----RRLAEQILYNHIIPEYLTSSSMYNGQT-TVRTLGKNKLLY  464 (682)
T ss_pred             eEEEcCCCceEEeeehhhhccCCChhh-------h-----HHHHHHHHHHhCcchhhhhhhhhcccc-eeeccCCeEEEE
Confidence            344666666999999999999975421       1     235889999999999999999988876 789999987766


Q ss_pred             EEeCCC-------cEEEcc-eeeeeeccccCCcEEEEecccccC
Q 039722          146 SKSSDG-------KLLVNR-VESERLDLKKGKIVIHIMDGVIMD  181 (196)
Q Consensus       146 ~~~~~G-------~v~Vn~-a~V~~aDI~asNGVIHVID~VlmP  181 (196)
                      -+- .+       .+.++| +.++.+|+...||+||+||+|+-|
T Consensus       465 fv~-r~~~s~~~t~i~~~~~~~Ii~aDi~~~nGvvH~id~vl~p  507 (682)
T KOG1437|consen  465 FVY-RHSVSANVTDILIGNEACIIEADISVKNGVVHIIDRVLDP  507 (682)
T ss_pred             EEe-cccccccceeeeccceeeEEecccceecCceEEeeEEcCc
Confidence            332 11       122222 458899999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
1w7d_A	137	Nmr Ensemble Of Fasciclin-Like Protein From Rhodoba		6e-04

>pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter Sphaeroides Length = 137

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 62  AEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVP-R 120
           A  +++ L  D  FT+F P+  AF    +  V D L  +N       L+ IL +  VP  
Sbjct: 24  AAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEK----LTEILTYHVVPGE 79
Query: 121 TLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
            +SS +    E ++ +++ G  L ++   +G   VN V   + D+     VIH++DGV+M
Sbjct: 80  VMSSDLT---EGMTAETVEGGALTVTL--EGGPKVNGVSISQPDVDASNGVIHVIDGVLM 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
2vxp_A	132	Transforming growth factor-beta-induced protein IG	6e-08
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	2e-07
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	1e-05

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A Length = 132

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 65  MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSS 124
           + E L  +  +T+F P+ +AF   L  +    L+GD        L+ IL +      L S
Sbjct: 26  LTETLNREGVYTVFAPTNEAFRA-LPPRERSRLLGDA-----KELANILKYHIGDEILVS 79

Query: 125 IMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVI 179
             +     +   SL G  L +S   +  + VN+      D+     V+H++  V+
Sbjct: 80  GGIGALVRL--KSLQGDKLEVSL-KNNVVSVNKEPVAEPDIMATNGVVHVITNVL 131

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 67  EMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIM 126
           + L  D  FT+F P+  AF    +  V D L  +N       L+ IL +  VP  + S  
Sbjct: 29  DTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENK----EKLTEILTYHVVPGEVMSSD 84

Query: 127 VPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
           +  G     +++ G  L ++   +G   VN V   + D+     VIH++DGV+M
Sbjct: 85  LTEGMTA--ETVEGGALTVTL--EGGPKVNGVSISQPDVDASNGVIHVIDGVLM 134

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 11/106 (10%)

Query: 75  FTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEIS 134
           +T+F P+  AF + L     D L  ++     ++L+ IL +  V    S   V    +  
Sbjct: 66  YTVFAPTNAAFSK-LPASTIDELKTNS-----SLLTSILTYHVVAGQTSPANVVGTRQ-- 117

Query: 135 YDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
             +L G ++ ++      L V   +     +      ++++D V+M
Sbjct: 118 --TLQGASVTVT-GQGNSLKVGNADVVCGGVSTANATVYMIDSVLM 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	100.0
2vxp_A	132	Transforming growth factor-beta-induced protein IG	100.0
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	99.97
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.94
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.93

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=100.00  E-value=2.9e-37  Score=238.64  Aligned_cols=111  Identities=30%  Similarity=0.426  Sum_probs=103.1

Q ss_pred             HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEE
Q 039722           65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLY  144 (196)
Q Consensus        65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~  144 (196)
                      |.++|.++||||||||||+||+++|++++++|+++++    ++.|.++|.||||||+++++|+..+.  .+.|++|++|+
T Consensus        27 l~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~----~~~l~~lL~yHvv~~~~~~~~l~~~~--~~~tl~G~~l~  100 (137)
T 1w7d_A           27 LVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPEN----KEKLTEILTYHVVPGEVMSSDLTEGM--TAETVEGGALT  100 (137)
T ss_dssp             THHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHH----HHHHHHHHHHHEEESCCCTTTSCSSE--EEECTTSCEEE
T ss_pred             CHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCC----HHHHHHHHHhhEeCcEEcHHHhcCCC--eeeccCCceEE
Confidence            7888999999999999999999999999999988654    67899999999999999999998875  58999999999


Q ss_pred             EEEeCCCcEEEcceeeeeeccccCCcEEEEecccccChh
Q 039722          145 ISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE  183 (196)
Q Consensus       145 V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~e  183 (196)
                      |+.. +| ++|||++|+++||.++|||||+||+||+|+.
T Consensus       101 v~~~-~g-v~vn~a~v~~~di~~~NGvIHvID~VL~P~s  137 (137)
T 1w7d_A          101 VTLE-GG-PKVNGVSISQPDVDASNGVIHVIDGVLMPGA  137 (137)
T ss_dssp             EECT-TS-CEETTEECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred             EEec-CC-EEEeCcEEEECCeecCCeEEEEECeeeCCCC
Confidence            9985 67 9999999999999999999999999999973

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=100.00  E-value=2.8e-35  Score=226.27  Aligned_cols=116  Identities=22%  Similarity=0.243  Sum_probs=103.3

Q ss_pred             hhcCchhHH--------HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeecccc
Q 039722           56 EEIGKFAEM--------MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMV  127 (196)
Q Consensus        56 ~~~G~F~tl--------Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv  127 (196)
                      .+.+.|+++        |.++|.++||||||||||+||+++|+++++.|++  +    ++.|.++|.|||+||.+.++++
T Consensus         9 ~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~--~----~~~l~~iL~yHvv~~~~~~~~l   82 (132)
T 2vxp_A            9 KGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLG--D----AKELANILKYHIGDEILVSGGI   82 (132)
T ss_dssp             TTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHT--C----HHHHHHHHHHSBBSSCCCSTTC
T ss_pred             HcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhc--C----HHHHHHHHHhcCcCceeehhhc
Confidence            445666666        7788999999999999999999999999998874  2    6799999999999999999999


Q ss_pred             CCCccceeecccCcEEEEEEeCCCcEEEcceeeeeeccccCCcEEEEeccccc
Q 039722          128 PFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM  180 (196)
Q Consensus       128 ~~g~~~~~~Tv~G~~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~Vlm  180 (196)
                      ..+.  .+.|++|++|+|+.+ +|.++|||++|+++||.++|||||+||+|||
T Consensus        83 ~~~~--~~~tl~G~~l~v~~~-~~~v~vn~a~v~~~di~a~NGvIHvID~VLl  132 (132)
T 2vxp_A           83 GALV--RLKSLQGDKLEVSLK-NNVVSVNKEPVAEPDIMATNGVVHVITNVLQ  132 (132)
T ss_dssp             SSCE--EEEBTTSSEEEEEEE-TTEEEESSCBEEEEEEEETTEEEEEESSCC-
T ss_pred             cCCc--eEecCCCCEEEEEEe-CCEEEEeccEEEEcceecCCEEEEEECcEeC
Confidence            7654  689999999999986 7889999999999999999999999999996

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=99.97  E-value=5.3e-33  Score=222.15  Aligned_cols=104  Identities=20%  Similarity=0.353  Sum_probs=96.1

Q ss_pred             HhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEEEE
Q 039722           67 EMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYIS  146 (196)
Q Consensus        67 d~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~V~  146 (196)
                      ++|.+.| ||||||||+||++++++++++|++  |    ++.|.+||.||||||+++++|+. |   .+.|++|++|+|+
T Consensus        59 ~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~--~----~~~L~~iL~yHvv~g~~~~~~l~-g---~~~Tl~G~~l~v~  127 (163)
T 1nyo_A           59 DTLNSGQ-YTVFAPTNAAFSKLPASTIDELKT--N----SSLLTSILTYHVVAGQTSPANVV-G---TRQTLQGASVTVT  127 (163)
T ss_dssp             HHHTSSS-EEECCBCHHHHHHSCHHHHHHHTT--C----SSHHHHHHHHTEEESCCCTTTSC-E---EEECTTSSEEEEE
T ss_pred             HHhCCCC-cEEEEECHHHHHhccHHHHHHHhc--C----HHHHHHHHHhceECCEEcHHHhC-C---ccccCCCCEEEEE
Confidence            6788999 999999999999999999999875  3    34799999999999999999997 4   5899999999999


Q ss_pred             EeCCCcEEEcceeeeeeccccCCcEEEEecccccCh
Q 039722          147 KSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDA  182 (196)
Q Consensus       147 ~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~  182 (196)
                      .. +|.++||+++|+++||.++|||||+||+||+|+
T Consensus       128 ~~-~~~v~vn~a~V~~~di~a~NGvIHvID~VL~P~  162 (163)
T 1nyo_A          128 GQ-GNSLKVGNADVVCGGVSTANATVYMIDSVLMPP  162 (163)
T ss_dssp             EC-SSCEEETTEECSSBCCCCSSEEEBCBSSCCCCC
T ss_pred             EE-CCEEEEeccEEEECceEcCCEEEEEECcEeCCC
Confidence            86 688999999999999999999999999999997

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.94  E-value=1.9e-27  Score=204.14  Aligned_cols=124  Identities=15%  Similarity=0.130  Sum_probs=98.0

Q ss_pred             hcCchhHH--------HHHhcC-CCCceEEEeCChHHHHHhh----hhhhhhcccCCCCCchHHHHHHhhhcccccc--e
Q 039722           57 EIGKFAEM--------MIEMLP-EDLAFTIFVPSVKAFDREL----KLQVNDSLVGDNVNNTYAILSRILGFSAVPR--T  121 (196)
Q Consensus        57 ~~G~F~tl--------Lvd~L~-g~GPFTVFAPTdeAFaklp----~gtve~LLk~enkd~tka~Ls~ILtYHVVPg--k  121 (196)
                      +.+.|+++        |.++|. +++|||||||||+||++++    +++.+.+ .+++    .+.|.++|.||+|||  .
T Consensus       167 ~~~~fs~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l-~~~~----~~~l~~iL~yHvv~~~~~  241 (324)
T 1o70_A          167 SDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLF-MADF----SYHSKSILERHLAISDKE  241 (324)
T ss_dssp             HCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHT-SGGG----HHHHHHHHHTTEEEESSC
T ss_pred             cCchHHHHHHHHHhhCHHHHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHh-ccCc----HHHHHHHHHhcEeCCcce
Confidence            34556655        667887 5899999999999999995    4455544 3332    458999999999999  8


Q ss_pred             eeccccCCCc----cceeecccCcEEEEEEe-CCCcEEEc----ceeeeeeccccCCcEEEEecccccChhhhh
Q 039722          122 LSSIMVPFGE----EISYDSLSGLTLYISKS-SDGKLLVN----RVESERLDLKKGKIVIHIMDGVIMDAEFEQ  186 (196)
Q Consensus       122 v~aadv~~g~----~~~~~Tv~G~~L~V~~~-~~G~v~Vn----~a~V~~aDI~asNGVIHVID~VlmP~ef~~  186 (196)
                      ++++++..+.    ...+.|++ .++.++.. .+|.+.||    +++|+++||.++|||||+||+||+|++..+
T Consensus       242 ~~~~~l~~~~~~~~~~~~~Tl~-~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NGvIHvID~VL~P~~~~~  314 (324)
T 1o70_A          242 YTMKDLVKFSQESGSVILPTFR-DSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLEEKDVV  314 (324)
T ss_dssp             CCHHHHHHHHHHSSSEEEECSS-SEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSCCTTTTC
T ss_pred             EcHHHHhhhccCCCeeeeeccC-CcEEEEEEecCCEEEEEecCceeEEEEcccccCCCeEEEeceeecCCcccc
Confidence            8878886432    12478999 78988763 36789998    899999999999999999999999998643

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.93  E-value=3.2e-27  Score=202.69  Aligned_cols=110  Identities=18%  Similarity=0.256  Sum_probs=92.3

Q ss_pred             HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCcc---ceeecccCc
Q 039722           65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEE---ISYDSLSGL  141 (196)
Q Consensus        65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~---~~~~Tv~G~  141 (196)
                      |.++|.+.||||||||||+||+++   ++++|++  +    ++.|.+||.||||||+++++++..+..   ..+.|++|.
T Consensus        38 l~~~L~~~~~~TvFAPtn~Af~~~---~~~~l~~--~----~~~l~~iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~  108 (324)
T 1o70_A           38 VLDDINSLTEVTILAPSNEAWNSS---NINNVLR--D----RNKMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNN  108 (324)
T ss_dssp             HHHHHHTCSSEEEEEECHHHHHHT---CTHHHHT--C----HHHHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTT
T ss_pred             HHHHHcCCCCeEEEEEChHhhhcc---cHhhhhC--C----HHHHHHHHHhcEeCCeecHHHHhhccCCCceEEEcCCCC
Confidence            678899999999999999999764   7777763  2    678999999999999999999865421   157999998


Q ss_pred             E-EEEEEeC---CCcEEEcc----eeeeeeccccCCcEEEEecccccChh
Q 039722          142 T-LYISKSS---DGKLLVNR----VESERLDLKKGKIVIHIMDGVIMDAE  183 (196)
Q Consensus       142 ~-L~V~~~~---~G~v~Vn~----a~V~~aDI~asNGVIHVID~VlmP~e  183 (196)
                      + +++....   ++.+.+||    ++|+++||.++|||||+||+||+||.
T Consensus       109 ~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~VL~pp~  158 (324)
T 1o70_A          109 TFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGVPY  158 (324)
T ss_dssp             CEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCTTSCC
T ss_pred             ceEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchhhhhch
Confidence            7 6776642   34688985    89999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1o70a1	140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	3e-04
d1o70a2	157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	0.001

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 20/136 (14%)

Query: 56  EEIGKFAEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGF 115
           E I      +++ +      TI  PS +A++             +NV      + +IL  
Sbjct: 11  EVIMDNGGAVLDDINSLTEVTILAPSNEAWNS---------SNINNVLRDRNKMRQILNM 61

Query: 116 SAVPRTLSSIMVPFGEEISYDSLSGL----TLYISKSSDGKLLVNRVESERL-------D 164
             +   L+   +          +  +     LY +   +G   V  VE   +       D
Sbjct: 62  HIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQAD 121

Query: 165 LKKGKIVIHIMDGVIM 180
           + +    +HI+D V+ 
Sbjct: 122 VAQTNGYVHIIDHVLG 137

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 9/133 (6%)

Query: 57  EIGKFAEMMIEMLPEDLAFTIFVPSVKAFDR---ELKLQVNDSLVGDNVNNTYAILSRIL 113
           ++GKF+    ++      FT FVP  K + +   +         + D   ++ +IL R L
Sbjct: 18  KMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHL 77

Query: 114 GFSAVPRTLSSIM--VPFGEEISYDSLSGLTLYISKSSDGKLLV----NRVESERLDLKK 167
             S    T+  ++        +   +         +   G+ ++     ++   R D++ 
Sbjct: 78  AISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKKINVYRPDVEC 137

Query: 168 GKIVIHIMDGVIM 180
              +IH++D  ++
Sbjct: 138 TNGIIHVIDYPLL 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	100.0
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.92
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.92

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.1e-34  Score=232.80  Aligned_cols=118  Identities=17%  Similarity=0.291  Sum_probs=104.0

Q ss_pred             hhhhcCchhHH-------------HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccc
Q 039722           54 RREEIGKFAEM-------------MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPR  120 (196)
Q Consensus        54 ~a~~~G~F~tl-------------Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPg  120 (196)
                      .+.+...|.++             |+++|.+ ||||||||||+||+++|+++++.|+.  +    +++|++||.||||||
T Consensus        33 ~a~~~p~lstl~~Al~a~~~~~a~L~~~L~~-gpfTvFAPtn~AF~~l~~~~~~~l~~--~----~~~L~~iL~yHVv~g  105 (163)
T d1nyoa_          33 AASNNPELTTLTAALSGQLNPQVNLVDTLNS-GQYTVFAPTNAAFSKLPASTIDELKT--N----SSLLTSILTYHVVAG  105 (163)
T ss_dssp             HHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-SSEEECCBCHHHHHHSCHHHHHHHTT--C----SSHHHHHHHHTEEES
T ss_pred             HHhcCCchHHHHHHHhhccccccchhHhhcC-CCeEEEEECcHHHHhcCHHHHHhhhh--h----HHHHHHhhhhhhhhh
Confidence            35666777777             5677764 99999999999999999999998854  2    247999999999999


Q ss_pred             eeeccccCCCccceeecccCcEEEEEEeCCCcEEEcceeeeeeccccCCcEEEEecccccChh
Q 039722          121 TLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE  183 (196)
Q Consensus       121 kv~aadv~~g~~~~~~Tv~G~~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~e  183 (196)
                      +++++++..    .++|++|.+|.|+.. +|.++||+++|+.+||.++|||||+||+||+||.
T Consensus       106 ~~~~~~l~~----~~~Tl~G~~l~v~~~-~~~i~v~~a~Vv~~di~a~NGvIHvID~VLlPPa  163 (163)
T d1nyoa_         106 QTSPANVVG----TRQTLQGASVTVTGQ-GNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA  163 (163)
T ss_dssp             CCCTTTSCE----EEECTTSSEEEEEEC-SSCEEETTEECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred             hhhhhhhhh----hhhhccCcceeEEec-CCEEEEeceEEEECCeecCCcEEEEECccccCCC
Confidence            999999863    478999999999986 7889999999999999999999999999999983

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=2.7e-26  Score=175.79  Aligned_cols=115  Identities=15%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             HHHhcCC-CCceEEEeCChHHHHHhhhhhh---hhcccCCCCCchHHHHHHhhhcccccceeeccccC------CCccce
Q 039722           65 MIEMLPE-DLAFTIFVPSVKAFDRELKLQV---NDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVP------FGEEIS  134 (196)
Q Consensus        65 Lvd~L~g-~GPFTVFAPTdeAFaklp~gtv---e~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~------~g~~~~  134 (196)
                      |.+.|.+ .++||||||||+||++++....   ++.+.+++    ++.|.+||.||++||+...++..      .+....
T Consensus        25 l~~~L~~~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~----~~~l~~il~~Hiv~g~~~~~~~~~~~~~~~~~~~~  100 (157)
T d1o70a2          25 FNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADF----SYHSKSILERHLAISDKEYTMKDLVKFSQESGSVI  100 (157)
T ss_dssp             TTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGG----HHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEE
T ss_pred             HHHHHhCCCCceEEEecCHHHHHHhhhhccchhhhhcCccc----HHHHHHHheeEEecccccchhhhhhhhhccCCcee
Confidence            3455554 5799999999999999976533   33444443    67999999999999987654421      111224


Q ss_pred             eecccCcEEEEEEeCCCcEEE----cceeeeeeccccCCcEEEEecccccChh
Q 039722          135 YDSLSGLTLYISKSSDGKLLV----NRVESERLDLKKGKIVIHIMDGVIMDAE  183 (196)
Q Consensus       135 ~~Tv~G~~L~V~~~~~G~v~V----n~a~V~~aDI~asNGVIHVID~VlmP~e  183 (196)
                      ..|..|.......+.+|.+.+    |+++|+++||.|+|||||+||+||+|+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~~~Di~a~NGviHvID~VLlp~~  153 (157)
T d1o70a2         101 LPTFRDSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLEEK  153 (157)
T ss_dssp             EECSSSEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSCCTT
T ss_pred             EEecCCcEEEEEEcCCcEEEEecCCccceEEECCEecCCeEEEEECceecCCC
Confidence            556655444333333455544    6799999999999999999999999953

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=1.5e-25  Score=167.91  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCc---cceeecccCc
Q 039722           65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGE---EISYDSLSGL  141 (196)
Q Consensus        65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~---~~~~~Tv~G~  141 (196)
                      +.+.|.+.++||||||||+||++++...   ++.  +    .+.|.++|.||++||+++++++..+.   ...+.|++|.
T Consensus        20 ~~~~l~~~~~~TvFAPtn~Af~~~~~~~---~~~--~----~~~l~~~l~yHiv~~~~~~~~l~~~~~~~~~~~~t~~g~   90 (140)
T d1o70a1          20 VLDDINSLTEVTILAPSNEAWNSSNINN---VLR--D----RNKMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNN   90 (140)
T ss_dssp             HHHHHHTCSSEEEEEECHHHHHHTCTHH---HHT--C----HHHHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTT
T ss_pred             HHHHhcCCCCEEEEEECHHHHhcCChhh---hcC--C----HHHHHHHHHhhccCCeEEHHHHhcCcccCceEeeecCCC
Confidence            6677888999999999999999875543   332  1    56899999999999999999984321   1257888887


Q ss_pred             EEEE-EEeCC---CcEEE----cceeeeeeccccCCcEEEEecccccCh
Q 039722          142 TLYI-SKSSD---GKLLV----NRVESERLDLKKGKIVIHIMDGVIMDA  182 (196)
Q Consensus       142 ~L~V-~~~~~---G~v~V----n~a~V~~aDI~asNGVIHVID~VlmP~  182 (196)
                      .... ....+   ..+.+    ++|+|+.+||.++|||||+||+||.||
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~a~V~~~Di~~~NGvIH~ID~VL~~P  139 (140)
T d1o70a1          91 TFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGVP  139 (140)
T ss_dssp             CEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCTTSC
T ss_pred             ceEEEEEeccceeEEEEecCCcceEEEEeCCEecCCeEEEEECCccCCc
Confidence            6543 32211   23433    458899999999999999999999998