Citrus Sinensis ID: 039739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIEGPQGD
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccccccccccccEEEccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccHHHHcccccccEEccccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccEEEcccccccccccccEEEccccccEEEcccccccccccccEEEccccEEEEEcccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEEcccEEEEEccccccccccccEEEcccccccccccccHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccHccHHHHHHHHHHccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHcccccccccEEEEEccccccccccHHHHcccccccEEEcccccccccccHHHHHccHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgsfpslntlylssnnfTDIATATQELhnftnleyltldSSSLHISLLQSIASIFpslknlsmigcevnglvrgqgfphfkslehLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSilgtnssrildrGLCSLVHLQVLNIAYNdlrgslpwclanmtslrildvssnqltgsisssplvhlTSIEElylsnnhfqipislepffnhsrlksfyadnneinaeitqshsltapnfqlsrlslssgygdgfifpkflyhqhdleyvdlshikmngefptwllenntkLRQLSLvndslggpfqlpihshkrlgmldisnnnfrghipveigdvlpsLFSLNISmnaldgsipssfgnmkFLQILDlsnnhltgeipehlVVGCVNLESLalsnnsleghmfsrnfnltnLRWLQLEgnhfvgeipqslskCFVLEglflnnnslsgkiprwlgNLTRLQhimmpknhlegpipvefcqldwlqildisdnnisgslpscfhplsvEQVHLSKNmlhgqlkrgtffnsySLVTLDLsynrlngnisdWVDGLSQLSHLILghnnlegevpVQLCklnqlqlldlsnnslhgsiplcldnttlhesynnsssldkqfeisfsiegpqgd
Flexible Loop (DISEMBL)
MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNnsssldkqfeisfsiegpqgd
Low Complexity Region (SEG)
MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYltldssslhisllqsiasiFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVnleslalsnnsleGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVqlcklnqlqlldlsnnslHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIEGPQGD
Disordered region (IsUnstruct)
*******NTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLH*************************
Disordered Region (DISOPRED)
MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISF*IE*P***
Disordered Region (DISEMBL)
MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIEGPQGD
Disordered Region (DISPRO)
*GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISF********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIEGPQGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	628	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.727	0.365	0.344	4e-50
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.705	0.407	0.333	4e-46
Q9FL28	1173	LRR receptor-like serine/	no	no	0.738	0.395	0.330	6e-46
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.662	0.410	0.334	2e-43
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.831	0.459	0.303	7e-43
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.724	0.398	0.306	3e-42
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.722	0.380	0.309	3e-42
Q9LHP4	1141	Receptor-like protein kin	no	no	0.729	0.401	0.313	2e-41
P93194	1109	Receptor-like protein kin	N/A	no	0.751	0.425	0.300	3e-41
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.880	0.462	0.286	8e-41

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  200 bits (508), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 177/514 (34%), Positives = 251/514 (48%), Gaps = 57/514 (11%)

Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
           L SLV+++ L I  N+L G +P  L N+ +L++L ++S +LTG I S  L  L  ++ L 
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLI 197

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
           L +N+ + PI  E   N S L  F A  N +N  I         N ++  L+ +S  G+ 
Sbjct: 198 LQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELG-RLENLEILNLANNSLTGE- 254

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
              P  L     L+Y+ L   ++ G  P  L +    L+ L L  ++L G       +  
Sbjct: 255 --IPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN-LQTLDLSANNLTGEIPEEFWNMS 311

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
           +L  L ++NN+  G +P  I     +L  L +S   L G IP      + L+ LDLSNN 
Sbjct: 312 QLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNS 371

Query: 372 LTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK 431
           L G IPE L    V L  L L NN+LEG +     NLTNL+WL L  N+  G++P+ +S 
Sbjct: 372 LAGSIPEALFE-LVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISA 430

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD---------- 481
              LE LFL  N  SG+IP+ +GN T L+ I M  NH EG IP    +L           
Sbjct: 431 LRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQN 490

Query: 482 --------------WLQILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFF 526
                          L ILD++DN +SGS+PS F  L  +EQ+ L  N L G L   +  
Sbjct: 491 ELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPD-SLI 549

Query: 527 NSYSLVTLDLSYNRLNGNISDWVDGLSQLS-----------------------HLILGHN 563
           +  +L  ++LS+NRLNG I       S LS                        L LG N
Sbjct: 550 SLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKN 609

Query: 564 NLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL 597
            L G++P  L K+ +L LLD+S+N+L G+IPL L
Sbjct: 610 QLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQL 643

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  186 bits (473), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 170/509 (33%), Positives = 252/509 (49%), Gaps = 66/509 (12%)

Query: 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF 197
           ++ LN++ + L G L   +  + SL  LD+S N  +G + S+ L + TS+E L LSNN F
Sbjct: 78  VETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPST-LGNCTSLEYLDLSNNDF 136

Query: 198 --QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFP 255
             ++P   + F +   L   Y D N ++  I  S        +L  L +S     G I P
Sbjct: 137 SGEVP---DIFGSLQNLTFLYLDRNNLSGLIPAS---VGGLIELVDLRMSYNNLSGTI-P 189

Query: 256 KFLYHQHDLEYVDLSHIKMNGEFPT--WLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRL 313
           + L +   LEY+ L++ K+NG  P   +LLEN   L +L + N+SLGG       + K+L
Sbjct: 190 ELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSSNCKKL 246

Query: 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373
             LD+S N+F+G +P EIG+   SL SL +    L G+IPSS G ++ + ++DLS+N L+
Sbjct: 247 VSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLS 305

Query: 374 GEIPEHLVVGCVNLESLALSNNSLEG---------------------------------- 399
           G IP+ L   C +LE+L L++N L+G                                  
Sbjct: 306 GNIPQELG-NCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQ 364

Query: 400 ---HMFSRNFNLTN-----------LRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 445
               M   N  LT            L+ L L  N F G+IP SL     LE + L  N  
Sbjct: 365 SLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRF 424

Query: 446 SGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 505
           +G+IP  L +  +L+  ++  N L G IP    Q   L+ + + DN +SG LP     LS
Sbjct: 425 TGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLS 484

Query: 506 VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
           +  V+L  N   G + R +  +  +L+T+DLS N+L G I   +  L  L  L L HN L
Sbjct: 485 LSYVNLGSNSFEGSIPR-SLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYL 543

Query: 566 EGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
           EG +P QL    +L   D+ +NSL+GSIP
Sbjct: 544 EGPLPSQLSGCARLLYFDVGSNSLNGSIP 572

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  186 bits (471), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 254/514 (49%), Gaps = 50/514 (9%)

Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
           L  LVHLQ+   A N L GS+P  +  + +L  LD+S NQLTG I      +L +++ L 
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNN---EINAEITQSHSLTAPNFQLSRLSLSSGY 248
           L+ N  +  I  E     S ++    DN    +I AE+     L A     ++L+ S   
Sbjct: 247 LTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSS--- 303

Query: 249 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL--LENNTKLRQLSLVNDSLGGPFQLP 306
                 P  L+    L ++ LS   + G     +  LE+   L  L+L +++  G F   
Sbjct: 304 -----IPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQS 355

Query: 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366
           I + + L +L +  NN  G +P ++G +L +L +L+   N L G IPSS  N   L++LD
Sbjct: 356 ITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLD 414

Query: 367 LSNNHLTGEIPEHL----------------------VVGCVNLESLALSNNSLEGHMFSR 404
           LS+N +TGEIP                         +  C NLE+L++++N+L G +   
Sbjct: 415 LSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL 474

Query: 405 NFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM 464
              L  LR LQ+  N   G IP+ +     L  L+L++N  +G+IPR + NLT LQ + M
Sbjct: 475 IGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRM 534

Query: 465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRG 523
             N LEGPIP E   +  L +LD+S+N  SG +P+ F  L S+  + L  N  +G +   
Sbjct: 535 YSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPAS 594

Query: 524 TFFNSYSLV-TLDLSYNRLNGNI-SDWVDGLSQLS-HLILGHNNLEGEVPVQLCKLNQLQ 580
               S SL+ T D+S N L G I  + +  L  +  +L   +N L G +P +L KL  +Q
Sbjct: 595 --LKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQ 652

Query: 581 LLDLSNNSLHGSIP----LCLDNTTLHESYNNSS 610
            +DLSNN   GSIP     C +  TL  S NN S
Sbjct: 653 EIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLS 686

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 223/475 (46%), Gaps = 59/475 (12%)

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
           G N S  L   L +LV L+VL++  N  +GSLP    N+  LR L +S N LTG + S  
Sbjct: 149 GNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSV- 207

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
           L  L S+E   L  N F+                                          
Sbjct: 208 LGQLPSLETAILGYNEFK------------------------------------------ 225

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
                     G I P+F  + + L+Y+DL+  K++GE P+ L +  + L  L L  ++  
Sbjct: 226 ----------GPIPPEF-GNINSLKYLDLAIGKLSGEIPSELGKLKS-LETLLLYENNFT 273

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
           G     I S   L +LD S+N   G IP+EI  +        +  N L GSIP +  ++ 
Sbjct: 274 GTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMR-NKLSGSIPPAISSLA 332

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH 420
            LQ+L+L NN L+GE+P  L      L+ L +S+NS  G + S   N  NL  L L  N 
Sbjct: 333 QLQVLELWNNTLSGELPSDLGKNSP-LQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNT 391

Query: 421 FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL 480
           F G+IP +LS C  L  + + NN L+G IP   G L +LQ + +  N L G IP +    
Sbjct: 392 FTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDS 451

Query: 481 DWLQILDISDNNISGSLPSCFHPLSVEQVHL-SKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
             L  +D S N I  SLPS    +   Q  L + N + G++    F +  SL  LDLS N
Sbjct: 452 VSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPD-QFQDCPSLSNLDLSSN 510

Query: 540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
            L G I   +    +L  L L +NNL GE+P Q+  ++ L +LDLSNNSL G +P
Sbjct: 511 TLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLP 565

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  176 bits (445), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 180/594 (30%), Positives = 282/594 (47%), Gaps = 72/594 (12%)

Query: 27  LHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL 86
           L N  +L+YL LD + L  +L  +I++   SL +LS    E+ G++    +     LE L
Sbjct: 206 LGNLQSLQYLWLDFNLLQGTLPSAISNC-SSLVHLSASENEIGGVIPA-AYGALPKLEVL 263

Query: 87  DMEGALIALNTSFLQIIGESMPSLKY-LSLFGSILGTNSSRILDRGLCSLVHLQVLNIAY 145
            +     +    F      S+  ++   + F  I+   ++     GL      QVL++  
Sbjct: 264 SLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGL------QVLDLQE 317

Query: 146 NDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEP 205
           N + G  P  L N+ SL+ LDVS N  +G I    + +L  +EEL L+NN          
Sbjct: 318 NRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPD-IGNLKRLEELKLANNSL-------- 368

Query: 206 FFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLE 265
                          EI  EI Q  SL   +F+ + L        G I P+FL +   L+
Sbjct: 369 -------------TGEIPVEIKQCGSLDVLDFEGNSL-------KGQI-PEFLGYMKALK 407

Query: 266 YVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRG 325
            + L     +G  P+ ++ N  +L +L+L  ++L G F + + +   L  LD+S N F G
Sbjct: 408 VLSLGRNSFSGYVPSSMV-NLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSG 466

Query: 326 HIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCV 385
            +PV I + L +L  LN+S N   G IP+S GN+  L  LDLS  +++GE+P  L  G  
Sbjct: 467 AVPVSISN-LSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELS-GLP 524

Query: 386 NLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 445
           N++ +AL  N+  G +     +L +LR++ L  N F GEIPQ+     +L  L L++N +
Sbjct: 525 NVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHI 584

Query: 446 SGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 505
           SG IP  +GN + L+ + +  N L G IP +  +L  L++LD+  NN+SG +P       
Sbjct: 585 SGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPP------ 638

Query: 506 VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
                                 S SL +L L +N L+G I     GLS L+ + L  NNL
Sbjct: 639 ------------------EISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNL 680

Query: 566 EGEVPVQLCKLNQ-LQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEI 618
            GE+P  L  ++  L   ++S+N+L G IP      +L    NN+S      E+
Sbjct: 681 TGEIPASLALISSNLVYFNVSSNNLKGEIP-----ASLGSRINNTSEFSGNTEL 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  174 bits (440), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 245/512 (47%), Gaps = 57/512 (11%)

Query: 137 HLQVLNIAYNDLRG---SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
            LQ L+++YN++ G    L   L++  S+  LD S N ++G IS S L++ T+++ L LS
Sbjct: 178 KLQTLDLSYNNITGPISGLTIPLSSCVSMTYLDFSGNSISGYISDS-LINCTNLKSLNLS 236

Query: 194 NNHF--QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
            N+F  QIP S   F     L+S    +N +   I      T  + Q  RLS ++  G  
Sbjct: 237 YNNFDGQIPKS---FGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTG-- 291

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
            + P+ L     L+ +DLS+  ++G FP  +L +   L+ L L N+ + G F   I + K
Sbjct: 292 -VIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACK 350

Query: 312 RLGMLDISNNNFRGHIPVEI------------------GDVLPS------LFSLNISMNA 347
            L + D S+N F G IP ++                  G++ P+      L ++++S+N 
Sbjct: 351 SLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNY 410

Query: 348 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFN 407
           L+G+IP   GN++ L+      N++ GEIP   +    NL+ L L+NN L G +    FN
Sbjct: 411 LNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPE-IGKLQNLKDLILNNNQLTGEIPPEFFN 469

Query: 408 LTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN 467
            +N+ W+    N   GE+P+       L  L L NN+ +G+IP  LG  T L  + +  N
Sbjct: 470 CSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTN 529

Query: 468 HLEGPIPVEFCQLDWLQILD--ISDNNIS------------GSLP--SCFHPLSVEQVHL 511
           HL G IP    +    + L   +S N ++            G L   S   P  + Q+  
Sbjct: 530 HLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPS 589

Query: 512 SKNMLHGQLKRG---TFFNSYSLVT-LDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG 567
            K+    ++  G   + F  Y  +  LDLSYN+L G I D +  +  L  L L HN L G
Sbjct: 590 LKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSG 649

Query: 568 EVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599
           E+P  + +L  L + D S+N L G IP    N
Sbjct: 650 EIPFTIGQLKNLGVFDASDNRLQGQIPESFSN 681

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 248/552 (44%), Gaps = 98/552 (17%)

Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
           L HLQ L+++ N L G LP  L+ +  L  LD+S N  +GS+  S  + L ++  L +SN
Sbjct: 112 LKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSN 171

Query: 195 NHF--QIPISLEPFFNHSRL---------------------KSFYAD----NNEINAEIT 227
           N    +IP  +    N S L                     K+F A     N  +  EI+
Sbjct: 172 NSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEIS 231

Query: 228 QSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 287
           +   L   +   + L  S         PK     H+L  ++L   ++ G  P  L  N  
Sbjct: 232 KLKHLAKLDLSYNPLKCS--------IPKSFGELHNLSILNLVSAELIGLIPPEL-GNCK 282

Query: 288 KLRQLSLVNDSLGGPFQLPIH-----------------------SHKRLGMLDISNNNFR 324
            L+ L L  +SL GP  L +                          K L  L ++NN F 
Sbjct: 283 SLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFS 342

Query: 325 GHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGC 384
           G IP EI D  P L  L+++ N L GSIP        L+ +DLS N L+G I E +  GC
Sbjct: 343 GEIPHEIEDC-PMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTI-EEVFDGC 400

Query: 385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK------------- 431
            +L  L L+NN + G +    + L  L  L L+ N+F GEIP+SL K             
Sbjct: 401 SSLGELLLTNNQINGSIPEDLWKLP-LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNR 459

Query: 432 -----------CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL 480
                         L+ L L++N L+G+IPR +G LT L  + +  N  +G IPVE    
Sbjct: 460 LEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDC 519

Query: 481 DWLQILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQL--KRGTFFNSYSLVTL--- 534
             L  LD+  NN+ G +P     L+ ++ + LS N L G +  K   +F+   +  L   
Sbjct: 520 TSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFL 579

Query: 535 ------DLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS 588
                 DLSYNRL+G I + +     L  + L +N+L GE+P  L +L  L +LDLS N+
Sbjct: 580 QHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNA 639

Query: 589 LHGSIPLCLDNT 600
           L GSIP  + N+
Sbjct: 640 LTGSIPKEMGNS 651

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 155/495 (31%), Positives = 235/495 (47%), Gaps = 37/495 (7%)

Query: 105 ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRI 164
           +++P+ + L    +I G N +  L   L   + L+VL+++ N L G +PW L+ + +L  
Sbjct: 99  KNLPAFRSLQKL-TISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLET 157

Query: 165 LDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF--QIPISLEPFFNHSRLKSFYADNNEI 222
           L ++SNQLTG I    +   + ++ L L +N     IP  L        ++     N EI
Sbjct: 158 LILNSNQLTGKIPPD-ISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIR--IGGNKEI 214

Query: 223 NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL 282
           + +I  S      N  +  L+ +S  G+    P  L     LE + +    ++GE P+  
Sbjct: 215 SGQIP-SEIGDCSNLTVLGLAETSVSGN---LPSSLGKLKKLETLSIYTTMISGEIPS-D 269

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
           L N ++L  L L  +SL G     I    +L  L +  N+  G IP EIG+   +L  ++
Sbjct: 270 LGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNC-SNLKMID 328

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF 402
           +S+N L GSIPSS G + FL+   +S+N  +G IP   +  C +L  L L  N + G + 
Sbjct: 329 LSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTT-ISNCSSLVQLQLDKNQISGLIP 387

Query: 403 SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462
           S    LT L       N   G IP  L+ C  L+ L L+ NSL+G IP  L  L  L  +
Sbjct: 388 SELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKL 447

Query: 463 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKR 522
           ++  N L G IP E      L  L +  N I+G +PS                  G LK+
Sbjct: 448 LLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGI----------------GSLKK 491

Query: 523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLL 582
             F        LD S NRL+G + D +   S+L  + L +N+LEG +P  +  L+ LQ+L
Sbjct: 492 INF--------LDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVL 543

Query: 583 DLSNNSLHGSIPLCL 597
           D+S N   G IP  L
Sbjct: 544 DVSANQFSGKIPASL 558

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  170 bits (431), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 158/525 (30%), Positives = 248/525 (47%), Gaps = 53/525 (10%)

Query: 83  LEHLDMEGALIALNTSFLQIIGESMPSLKYLS----LFGSILGTNSSRILDRGLCSLVHL 138
           LEH+D+       + SF   I +++ +L+ L      F S++G          L S+ HL
Sbjct: 118 LEHIDLS------SNSFTGNIPDTLGALQNLRNLSLFFNSLIGP-----FPESLLSIPHL 166

Query: 139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF- 197
           + +    N L GS+P  + NM+ L  L +  NQ +G + SS L ++T+++ELYL++N+  
Sbjct: 167 ETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSS-LGNITTLQELYLNDNNLV 225

Query: 198 -QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPK 256
             +P++L    N   L      NN +   I                            P 
Sbjct: 226 GTLPVTLN---NLENLVYLDVRNNSLVGAI----------------------------PL 254

Query: 257 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGML 316
                  ++ + LS+ +  G  P  L  N T LR+    + +L GP         +L  L
Sbjct: 255 DFVSCKQIDTISLSNNQFTGGLPPGL-GNCTSLREFGAFSCALSGPIPSCFGQLTKLDTL 313

Query: 317 DISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 376
            ++ N+F G IP E+G    S+  L +  N L+G IP   G +  LQ L L  N+L+GE+
Sbjct: 314 YLAGNHFSGRIPPELGKC-KSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEV 372

Query: 377 PEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLE 436
           P   +    +L+SL L  N+L G +      L  L  L L  NHF G IPQ L     LE
Sbjct: 373 PLS-IWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLE 431

Query: 437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 496
            L L  N  +G IP  L +  +L+ +++  N+LEG +P +      L+ L + +NN+ G 
Sbjct: 432 VLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGG 491

Query: 497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLS 556
           LP      ++    LS N   G +   +  N  ++  + LS N+L+G+I   +  L +L 
Sbjct: 492 LPDFVEKQNLLFFDLSGNNFTGPIPP-SLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLE 550

Query: 557 HLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601
           HL L HN L+G +P +L   ++L  LD S+N L+GSIP  L + T
Sbjct: 551 HLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLT 595

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  169 bits (427), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 186/649 (28%), Positives = 295/649 (45%), Gaps = 96/649 (14%)

Query: 6   SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIG 65
           SL +L LS N+ +   T    L + + L++L + S++L           FP         
Sbjct: 123 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD----------FPG-------- 164

Query: 66  CEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSS 125
            +V+G ++        SLE LD+    I+       ++ +    LK+L++ G+ +  +  
Sbjct: 165 -KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD-- 215

Query: 126 RILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 185
             +D   C  V+L+ L+++ N+    +P+ L + ++L+ LD+S N+L+G  S + +   T
Sbjct: 216 --VDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCT 269

Query: 186 SIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLS 245
            ++ L +S+N F  PI   P      L+      N+   EI     L+     L+ L LS
Sbjct: 270 ELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLS 324

Query: 246 SGYGDGFIFPKF------------------------LYHQHDLEYVDLSHIKMNGEFPTW 281
             +  G + P F                        L     L+ +DLS  + +GE P  
Sbjct: 325 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 384

Query: 282 LLENNTKLRQLSLVNDSLGGPF--QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339
           L   +  L  L L +++  GP    L  +    L  L + NN F G IP  + +    L 
Sbjct: 385 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELV 443

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG 399
           SL++S N L G+IPSS G++  L+ L L  N L GEIP+ L+     LE+L L  N L G
Sbjct: 444 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTG 502

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
            + S   N TNL W+ L  N   GEIP+ + +   L  L L+NNS SG IP  LG+   L
Sbjct: 503 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 562

Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL----------PSC--------F 501
             + +  N   G IP    +    Q   I+ N I+G              C        F
Sbjct: 563 IWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 618

Query: 502 HPLSVEQVHL--SKN------MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS 553
             +  EQ++   ++N       ++G     TF N+ S++ LD+SYN L+G I   +  + 
Sbjct: 619 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 678

Query: 554 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTL 602
            L  L LGHN++ G +P ++  L  L +LDLS+N L G IP  +   T+
Sbjct: 679 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 727

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
255581263	912	serine-threonine protein kinase, plant-t	0.820	0.564	0.539	1e-142
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.944	0.405	0.436	1e-114
224142481	781	predicted protein [Populus trichocarpa]	0.816	0.656	0.473	1e-107
224123984	1016	predicted protein [Populus trichocarpa]	0.896	0.554	0.446	1e-106
224134891	953	predicted protein [Populus trichocarpa]	0.864	0.569	0.447	1e-105
224102049	577	predicted protein [Populus trichocarpa]	0.75	0.816	0.483	1e-105
224124000	920	predicted protein [Populus trichocarpa]	0.939	0.641	0.426	1e-103
224073436	1014	predicted protein [Populus trichocarpa]	0.939	0.581	0.423	1e-102
224098008	1097	predicted protein [Populus trichocarpa]	0.890	0.509	0.431	2e-99
224124490	981	predicted protein [Populus trichocarpa]	0.944	0.604	0.414	5e-99

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/526 (53%), Positives = 367/526 (69%), Gaps = 11/526 (2%)

Query: 72  VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRG 131
           ++ Q  P+F++LE L ++   I L  SFLQ +G  M SLK LSL G  L      +  +G
Sbjct: 168 IQAQDLPNFENLEELYLDK--IELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
           LC L+HL+VL+++ N+  G LPWCL+N+TSL++LD+SSNQ  G IS+SPL  L S+ +L 
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
           +SNNHFQ+P SL PFFNHS LK     NN I  E  + HS  AP FQL  + + SGYG  
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISI-IFSGYGIC 338

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
             FP FLYHQ++L++VDLSH+ + GEFP WLL NNT+L  L LVN+SL G  QLP+H H 
Sbjct: 339 GTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHV 398

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
            L  LDISNN+   HIP+EIG  LP L  LN+S N  DGSIPSSFGNM  L+ILDLSNN 
Sbjct: 399 NLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQ 458

Query: 372 LTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK 431
           L+G IPEHL  GC +L +L LSNNSL+G MFS+ FNLTNL WL+L+ NHF G IP+SLSK
Sbjct: 459 LSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK 518

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
              L  + L++N LSG IP W+GNL+ LQ++++  N L+GPIPVEFCQL +L++LD+++N
Sbjct: 519 S-ALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANN 577

Query: 492 NISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG 551
           ++SG LPSC  P S+  VHLS+NM+ G      F  S+ LVTLDLS NR+ G I   + G
Sbjct: 578 SVSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGG 636

Query: 552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL 597
           ++ L  L L  N  +GE+P Q+C L QL L+ L++N+L GSIP CL
Sbjct: 637 INALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCL 682

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 266/609 (43%), Positives = 372/609 (61%), Gaps = 16/609 (2%)

Query: 1    MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
            + +  +L  L LS N+     T T  L +   L  L L+++  +IS L+S+  +   LK 
Sbjct: 614  LAALHNLEELDLSKNDLESFITTTG-LKSLRKLRVLHLETNDFNISTLKSLGRL-SLLKE 671

Query: 61   LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
            L + G ++ G V  +   + ++LE LD+    I+  +S LQI+ E M SLK LSL  +  
Sbjct: 672  LYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQIV-EVMTSLKALSLRSN-- 726

Query: 121  GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
            G N S+   +GLC L +LQ L+++ N   GS+  CL N+TSLR LD+S N+ +G++ SS 
Sbjct: 727  GINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSL 786

Query: 181  LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLK--SFYADNNEINAEITQSHSLT-APNF 237
               L  +E L LS+N FQ    +  F  HS+L+       NN +   + +S   T  P+F
Sbjct: 787  FAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTL---LLESEDQTWVPSF 843

Query: 238  QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVND 297
            QL    LSS        P FL++QHDL  VDLS+  +  +FPTWL++NNT+L +L+L N+
Sbjct: 844  QLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNN 903

Query: 298  SLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG 357
            SL G F LP   +     +DISNN  +G +P  I   LP+L  LN+S N+ +GSIPS FG
Sbjct: 904  SLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FG 962

Query: 358  NMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417
             M+ L  LDLSNN  TG IPE L +GC +LE L LS N L G MF R  NL +LR L+L+
Sbjct: 963  GMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELD 1022

Query: 418  GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 477
             NHF G+IP  LS    LE L++++NS+SGK+P W+GN++ L  ++MP N LEGPIPVEF
Sbjct: 1023 DNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEF 1081

Query: 478  CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537
            C LD L++LD+S+NN+SGSLPSCF P  +  VHL +N L G L +  F  S  L TLD+ 
Sbjct: 1082 CSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FTRSMDLATLDIR 1140

Query: 538  YNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL 597
             N L+G I DW+   S LS L+L  N+ +G++P QLC+L+++ +LDLS NSL G IP CL
Sbjct: 1141 NNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCL 1200

Query: 598  DNTTLHESY 606
            +       +
Sbjct: 1201 NKIQFRTGF 1209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 258/545 (47%), Positives = 332/545 (60%), Gaps = 32/545 (5%)

Query: 58  LKNLSMIGCEVNGLVRGQGFPHFKSLEHLD-MEGALIALNTSFLQIIGESMPSLKYLSLF 116
           L  L + G E+       GF     L  L+ +E +   +N S L  + E + SLK+L+L 
Sbjct: 2   LVELRLGGNEIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL-EGLSSLKHLNLD 60

Query: 117 GSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
            + L      I  +GLC L  LQ L+I+YNDL G LP CL N+ +L++LD+S N  +G+I
Sbjct: 61  NNQL---KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNI 116

Query: 177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
           S S +  LTSI +L LS+NHFQIPISL PFFN S LK+   D+NEI       H+L  P 
Sbjct: 117 SLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PR 175

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
           FQL RLSL+  +G G  FPKFLY+QHDL++VDLSHIK+ GEFP+WLL+NNTKL  L LVN
Sbjct: 176 FQLQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVN 234

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSF 356
            SL G  QLP  SH  L  LDIS N+ +  IP +IG   P L  LN+S N   GSIPSS 
Sbjct: 235 SSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSI 294

Query: 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416
            NM  L +LDLSNN L+G IPE LV GC++L  L LSNN L+G  F R+FNL  L  L L
Sbjct: 295 SNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLIL 354

Query: 417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE 476
            GN   G +P SLS    LE L ++ N+LSGKIPRW+G ++ LQ++ + +N+L G +P  
Sbjct: 355 SGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSS 414

Query: 477 FCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
           FC                          ++ +V+LSKN L G L  G      SL  LDL
Sbjct: 415 FCS-----------------------SRTMTEVYLSKNKLEGSLI-GALDGCLSLNRLDL 450

Query: 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC 596
           S+N   G I + +  L +LS L+LG+NNLEG++P QLCKL +L L+DLS+N L G I  C
Sbjct: 451 SHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPC 510

Query: 597 LDNTT 601
           L  T+
Sbjct: 511 LQPTS 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 261/584 (44%), Positives = 351/584 (60%), Gaps = 21/584 (3%)

Query: 33  LEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQG-FPHFKSLEHLDMEGA 91
           LE L L  +  + S+  S+   F SLK+L +    + G     G F +  +LE L ++G+
Sbjct: 192 LENLHLRGNQYNDSIFSSLTG-FSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGS 250

Query: 92  LIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGS 151
            + LN  FL  IG  +P+LK LS     L   +  +  +GLC L +L+ L ++ N+L GS
Sbjct: 251 SLPLN--FLHNIG-VLPALKVLSAGECDL---NGTLPAQGLCGLKNLEQLFLSENNLEGS 304

Query: 152 LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSR 211
           LP C  N++SL++LDVS NQ  G+I+SSPL +L S+E + LSNNHFQ+PIS++PF NHS 
Sbjct: 305 LPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSS 364

Query: 212 LKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIF--PKFLYHQHDLEYVDL 269
           L+ F +DNN +  E    H L  P FQL   SLS    +      P FLY+QHDL  +DL
Sbjct: 365 LRFFSSDNNRLVTEPMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDL 423

Query: 270 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPV 329
           S     G FP+WLL+NNT+L QL L  +S  G  QL  H +  +  +DISNNN  G IP 
Sbjct: 424 SQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPK 483

Query: 330 EIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES 389
            I  +  +L++L ++ N L G IPS  GN   L +LDLSNN L+    E  +     L  
Sbjct: 484 NICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQFIT----LTF 539

Query: 390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEI---PQSLSKCFVLEGLFLNNNSLS 446
           L LSNN+L G + +   N + L +L L  N+F G+I   P  +   + +  L L+NN  S
Sbjct: 540 LKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPV--LDLSNNQFS 597

Query: 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506
           G +PRW  NLT++  I + KNH  GPIPVEFC+LD L+ LD+SDNN+  S+PSCF+P  +
Sbjct: 598 GMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHI 657

Query: 507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566
             VHLSKN L G L  G F+NS SLVTLDL  N   G+IS+W+  LS LS L+L  NN +
Sbjct: 658 THVHLSKNRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFD 716

Query: 567 GEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSS 610
           GE  VQLC L QL +LD+S N L G +P CL N +  ESY  +S
Sbjct: 717 GEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKAS 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 252/563 (44%), Positives = 339/563 (60%), Gaps = 20/563 (3%)

Query: 49  QSIASIF-PSLKNLSMIGCEVNGLVRGQG-FPHFKSLEHLDMEGALIALNTSFLQIIGES 106
           +SI S F  +L  L  +    NGL  G G F +  +LE L ++   + +N  FLQ IG +
Sbjct: 139 KSILSCFNGNLSTLKSLDLSANGLTAGSGTFFNSSTLEELYLDNTSLRIN--FLQNIG-A 195

Query: 107 MPSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRIL 165
           +P+LK LS+    L GT    +  +G C L +L+ L++A N+  GSLP CL N++SL++L
Sbjct: 196 LPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLL 251

Query: 166 DVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAE 225
           DVS NQ TG+ +S PL +L S+E L LSNN F++PIS++PF NHS LK F ++NN +  E
Sbjct: 252 DVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTE 311

Query: 226 ITQSHSLTAPNFQLSRLSLSSGYGDGF--IFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 283
                +L  P FQL    LSS        + P FLY+Q DL  +DLSH  + G FP+WLL
Sbjct: 312 PVAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLL 370

Query: 284 ENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNI 343
           +NNT+L QL L  +   G  QL  H +  +  LDISNNN  G I  +I  + P+L++L +
Sbjct: 371 KNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRM 430

Query: 344 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFS 403
           + N   G IPS  GN+  L  LDLSNN L+    E L +       L LSNNSL G + +
Sbjct: 431 AKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLTI-----PVLKLSNNSLGGQIPT 485

Query: 404 RNFNLTNLRWLQLEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462
             FN +  ++L L GN+F G+I    L     L  L L+NN  SG +PR   N T L+ +
Sbjct: 486 SVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVL 545

Query: 463 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKR 522
            + KNH +GPIP +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L  
Sbjct: 546 DLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTY 605

Query: 523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLL 582
           G FFNS  LVT+DL  N L G+I +W+   S LS L+L  N+ +GE+PVQLC L QL +L
Sbjct: 606 G-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSIL 664

Query: 583 DLSNNSLHGSIPLCLDNTTLHES 605
           D+S N L G +P CL N T  ES
Sbjct: 665 DVSQNQLSGPLPSCLGNLTFKES 687

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/482 (48%), Positives = 302/482 (62%), Gaps = 11/482 (2%)

Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
           LC L  LQ L+I+YN++ GSLP C +N+T+L+ LD+S N  TG+IS SP+  LTSI +L 
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
           LS+NHFQIPISL PFFN S LK+   D NE+       H+L  P FQL RLSL+   G G
Sbjct: 67  LSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHNLI-PRFQLQRLSLAYT-GSG 124

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
             F K LY+QHDL++VDLSHIKM GEFP+WLL+NNTKL +L LVN+S  G FQL  HS  
Sbjct: 125 GTFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLD 184

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
           RL  LDIS N+    IP EIG   P L  LN+S N   GSIPSS  NM  L+ILDLSNN 
Sbjct: 185 RLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNE 244

Query: 372 LTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK 431
           L+G IPEHLV  C++L  L LSNN L+G  F RNFNL  L  L L GN   G +P SLS 
Sbjct: 245 LSGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSN 304

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
              LE L ++ N+LSGKIPRW+ N++ L+++ + +N+L G +P  FC    +  + +S N
Sbjct: 305 GSRLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFCSSMMMTEVYLSKN 364

Query: 492 NISGSLPSCFHP-LSVEQVHLSKNMLHGQL--KRGTFFNSYSLVTLDLSYNRLNGNISDW 548
            + GSL   F   LS+ ++ LS N L G++  K G   N   +  L+LS+N L G I   
Sbjct: 365 KLEGSLIDAFDGCLSLNKLDLSHNSLTGEIPFKLGYLGN---IQVLNLSHNSLTGPIPPT 421

Query: 549 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNN 608
              L ++  L + +NNL GE+P QL  L+ L    ++ N+L G  P   +      ++N 
Sbjct: 422 FSNLKKIESLDISYNNLNGEIPYQLVDLDSLSAFSVAYNNLSGKTP---ERAAQFATFNR 478

Query: 609 SS 610
           SS
Sbjct: 479 SS 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124000|ref|XP_002330262.1| predicted protein [Populus trichocarpa] gi|222871718|gb|EEF08849.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 260/610 (42%), Positives = 363/610 (59%), Gaps = 20/610 (3%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +G F +L +LYLS+N FT  +T    L N ++LE + LD S L  S L++I  +  +LK 
Sbjct: 104 LGGFSTLKSLYLSNNRFTG-STGLNGLSNSSSLEEVFLDDSFLPASFLRNIGPL-STLKV 161

Query: 61  LSMIGCEVNGLVRGQG-FPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
           LS+ G + +  +  +G F +  +LE L ++   + LN  FLQ IG ++P+LK LS+    
Sbjct: 162 LSLTGVDFSSTLPAEGTFFNSSTLEELHLDRTSLPLN--FLQNIG-TLPTLKVLSVGQCD 218

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
           L   +  +  +G C L +L+ L+++ N+  GSLP CL N++SL++LDVS+NQ TG+I+S 
Sbjct: 219 L---NDTLPAQGWCELKNLEQLDLSGNNFGGSLPDCLGNLSSLQLLDVSNNQFTGNIASG 275

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
            L +L SIE L LSNN F++PIS++PF NHS LK FY+ NN++  E    H    P FQL
Sbjct: 276 SLTNLISIESLSLSNNLFEVPISMKPFMNHSSLKFFYSKNNKLVTEPMSFHDFI-PKFQL 334

Query: 240 SRLSLSSGYGDGFI---FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
               LS+      +    P FLY Q+DL  +DLSH  + G FP+WLL+NNT+L QL L  
Sbjct: 335 VFFRLSNSPTSEAVNIEIPNFLYSQYDLRVLDLSHNNITGMFPSWLLKNNTQLEQLLLNE 394

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSF 356
           +S  G  QL  H +  +  LDISNNN  G I      + P+L+ L ++ N   G IPS  
Sbjct: 395 NSFVGTLQLQDHPNPHMTELDISNNNMHGQILKNSCLIFPNLWILRMAENGFTGCIPSCL 454

Query: 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416
           GN   + ILDLSNN L+    E        + SL LSNN+L G +    FN +   +L L
Sbjct: 455 GNNLSMAILDLSNNQLSTVKLEQ-----PRIWSLQLSNNNLGGQIPISIFNSSGSLFLYL 509

Query: 417 EGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV 475
            GN+F G+I    S  + +   L L+NN  SG +PR   N T++    + KN   GPI  
Sbjct: 510 SGNNFWGQIQDFPSPSWEIWVELDLSNNQFSGMLPRCFVNSTQMFTFDLSKNQFNGPITE 569

Query: 476 EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLD 535
           +FC+LD L+ LD+S+NN+SG +PSCF P  + QVHLSKN L G L  G F+NS SL+T+D
Sbjct: 570 DFCKLDQLEYLDLSENNLSGFIPSCFSPPQITQVHLSKNRLSGPLTNG-FYNSSSLITID 628

Query: 536 LSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595
           L  N   G+I +W+  LS LS L+L  N+ +GE P  LC L +L+ LD+S N L G +P 
Sbjct: 629 LRDNNFTGSIPNWIGNLSSLSVLLLRANHFDGEFPAHLCWLEKLKFLDVSQNHLSGPLPS 688

Query: 596 CLDNTTLHES 605
           CL N T  ES
Sbjct: 689 CLGNLTFKES 698

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 258/609 (42%), Positives = 365/609 (59%), Gaps = 19/609 (3%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           M    +L +L LS N  T         H    L+ L L  +  + S+L  +  +   LK+
Sbjct: 145 MTGLSTLKSLDLSGNGLTGSGFEIISSH-LEKLDNLDLSYNIFNDSILSHLRGL-SYLKS 202

Query: 61  LSMIGCEVNGLVRGQG-FPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
           L++ G  + G     G F +  +LE L ++   + +N  FLQ IG ++P LK LS+    
Sbjct: 203 LNLSGNMLLGSTTVNGTFFNSSTLEELYLDRTSLPIN--FLQNIG-ALPDLKVLSVAECD 259

Query: 120 L-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
           L GT    +  +G C L +L+ L+++ N+L GSLP CL N++SL++LDVS NQ TG+I+S
Sbjct: 260 LHGT----LPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIAS 315

Query: 179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQ 238
            PL +LTS+E L LSNN F++PIS++PF NHS LK F ++NN++  E     +L  P FQ
Sbjct: 316 GPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLI-PKFQ 374

Query: 239 LSRLSLS-SGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVND 297
           L    LS +        P FLY+Q+D+  +DLSH  +   FP+WLL+NNT+L QL L N+
Sbjct: 375 LVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNN 434

Query: 298 SLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG 357
           S  G  QL  H +  +  LDISNNN  G IP +I  + P+++SL ++ N   G IPS  G
Sbjct: 435 SFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLG 494

Query: 358 NMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417
           N+  L+ILDLSNN L+    E L      +  L LSNN+L G + +  FN + L +L L 
Sbjct: 495 NISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEYLYLH 550

Query: 418 GNHFVGEIPQSLSKCFVL-EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE 476
           GN+F G+I   L   + +   L L++N  SG +PRWL N T L  I + KN+ +GPI  +
Sbjct: 551 GNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRD 610

Query: 477 FCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
           FC+L+ L+ LD+S+NN+SG +PSCF P  +  VHLS+N L G L  G F+N+ SLVT+DL
Sbjct: 611 FCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMDL 669

Query: 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC 596
             N   G+  +W+  LS LS L+L  N+ +GE+PVQLC L QL +LD+S N L G +P C
Sbjct: 670 RDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSC 729

Query: 597 LDNTTLHES 605
           L N T  ES
Sbjct: 730 LGNLTFKES 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 253/586 (43%), Positives = 351/586 (59%), Gaps = 27/586 (4%)

Query: 44  HISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQII 103
           ++ +LQS+ S +PSLK LS+   +   L +G  F +  +LE L ++   + +N  FLQ  
Sbjct: 329 NLDILQSLRS-WPSLKTLSL---KDTNLSQGTFF-NSSTLEELHLDNTSLPIN--FLQNT 381

Query: 104 GESMPSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSL 162
           G ++P+LK LS+    L GT    +  +G C L +L+ L++A N+  G+LP CL N++SL
Sbjct: 382 G-ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSL 436

Query: 163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
           ++LDVS NQ TG+I+  PL  L S+E L LSNN F++PIS++PF NHS LK F ++NN +
Sbjct: 437 QLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNRL 496

Query: 223 NAEITQSHSLTAPNFQLSRLSLSSGYGDGFI---FPKFLYHQHDLEYVDLSHIKMNGEFP 279
             E     +L  P FQL    LSS      +      FLY+Q+DL  +DLSH  + G FP
Sbjct: 497 VTESAAFDNLI-PKFQLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFP 555

Query: 280 TWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339
           +WLL+NNT++ QL L  +S  G  QL  H +  +  LDISNNN  G IP +I  + P+L+
Sbjct: 556 SWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELDISNNNINGQIPKDICLIFPNLW 615

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG 399
            L ++ N   G IPS  GN   L  LDLSNN L+    E L      ++ L LSNNSL G
Sbjct: 616 ILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKLEQLTT----IQVLKLSNNSLGG 671

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTR 458
            + +  FN +  ++L L GN+F G+I    L    V   L L+NN  SG +PR   N T 
Sbjct: 672 QIPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTY 731

Query: 459 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHG 518
            + + + KN  +GPIP +FC+LD L+ LD+SDN +SG +PSCF+P  +  +HLSKN L G
Sbjct: 732 DEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSG 791

Query: 519 QLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 578
            L  G F+NS SLVT+DL  N   G+I +W+  LS LS L+L  NN +GE+ VQLC L Q
Sbjct: 792 PLTYG-FYNSSSLVTMDLRDNSFIGSIPNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQ 850

Query: 579 LQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIEG 624
           L +LD+S N L G +P CL N TL E   N+    +   I FS+ G
Sbjct: 851 LSILDVSQNQLSGPLPSCLGNLTLKEIPENA----RGSRIWFSVMG 892

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124490|ref|XP_002330036.1| predicted protein [Populus trichocarpa] gi|222871461|gb|EEF08592.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 257/620 (41%), Positives = 351/620 (56%), Gaps = 27/620 (4%)

Query: 1   MGSFPSLNTLYLSSNNFT---DIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPS 57
           +  F +L +LYLS+N FT   D+           NLE L L  + L+ S+L S++  F +
Sbjct: 113 LSGFSTLKSLYLSNNRFTVTIDLKGFQVLASGLRNLEQLDLSYNKLNDSVLSSLSG-FST 171

Query: 58  LKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFG 117
           LK L +      G     G    + LE L ++       +  ++ +G ++PSLK      
Sbjct: 172 LKFLDLSNNRFTG---STGLNGLRKLETLYLDSTDFK-ESILIESLG-ALPSLK------ 220

Query: 118 SILGTNSSRI--LDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGS 175
             L    SR     +G C L +L+ L ++ N+L+G LP C  N++SL+ILD+S NQL G+
Sbjct: 221 -TLHARYSRFTHFGKGWCELKNLEHLFLSGNNLKGVLPPCFGNLSSLQILDLSYNQLEGN 279

Query: 176 ISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAP 235
           I+ S + HLT +E L +SNN+FQ+PIS   F NHS LK F  DNNE+ A    S     P
Sbjct: 280 IAFSHISHLTQLEYLSVSNNYFQVPISFGSFMNHSNLKFFECDNNELIA--APSFQPLVP 337

Query: 236 NFQLSRLSLSSGYGDGFI--FPKFLYHQHDLEYVDLSHIKMNGE-FPTWLLENNTKLRQL 292
            F+L   S S+         FP FL  Q+DL +VDLSH K  GE FP+WL ENNTKL +L
Sbjct: 338 KFRLRVFSASNCTPKPLEAGFPNFLQSQYDLVFVDLSHNKFVGESFPSWLFENNTKLNRL 397

Query: 293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
            L + S  GP QLP H    L  +D+S N+  G I   I  + P L +  ++ N+L G I
Sbjct: 398 YLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQIARNICSIFPRLKNFMMANNSLTGCI 457

Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEH-LVVGCVNLESLALSNNSLEGHMFSRNFNLTNL 411
           P  FGNM  L+ LDLSNNH++ E+ EH L     +L SL LSNN+ +G +    FN+T+L
Sbjct: 458 PPCFGNMSSLEYLDLSNNHMSCELLEHNLPTVGSSLWSLKLSNNNFKGRLPLSVFNMTSL 517

Query: 412 RWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGN--LTRLQHIMMPKNHL 469
            +L L+GN F G++  + S         ++NN LSG +PR +GN  + R Q I + +NH 
Sbjct: 518 EYLFLDGNKFAGQVSGTFSLASSFSWFDISNNLLSGMLPRGIGNSSIYRFQAIDLSRNHF 577

Query: 470 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSY 529
           EG IP E+    WL+ LD+S+NN+SGSLP  F    +  VHL  N L G L    F+N  
Sbjct: 578 EGTIPKEYFNSYWLEFLDLSENNLSGSLPLGFLAPHLRHVHLYGNRLTGPLPNA-FYNIS 636

Query: 530 SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
           SLVTLDL YN L G I +W+  LS+LS L+L  N   GE+PVQLC L +L +LDLS N+ 
Sbjct: 637 SLVTLDLGYNNLTGPIPNWIASLSELSILLLKSNQFNGELPVQLCLLRKLSILDLSENNF 696

Query: 590 HGSIPLCLDNTTLHESYNNS 609
            G +P CL N    ESY  +
Sbjct: 697 SGLLPSCLSNLDFTESYEKT 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.808	0.469	0.362	3.2e-72
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.767	0.499	0.359	1.4e-69
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.843	0.53	0.336	1.7e-68
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.847	0.597	0.325	2.6e-63
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.791	0.547	0.340	1.8e-62
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.880	0.566	0.333	4.7e-61
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.920	0.618	0.303	3.7e-53
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.778	0.391	0.317	3.7e-47
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.670	0.519	0.299	2.5e-45
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.740	0.409	0.315	2.6e-45

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 189/521 (36%), Positives = 278/521 (53%)

Query:   103 IGESMP-SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTS 161
             +G  +P SL+ L    + L       L  G+C L+ L+ L+++ N L  SLP+CL N+T 
Sbjct:   326 LGLEIPTSLQVLDFKRNQLSLTHEGYL--GICRLMKLRELDLSSNALT-SLPYCLGNLTH 382

Query:   162 LRILDVSSNQLTGSISSSPLVHLTSI-EELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
             LR LD+S+NQL G++SS  +  L S+ E L L +N+F          N +RL  F   ++
Sbjct:   383 LRTLDLSNNQLNGNLSSF-VSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKL-SS 440

Query:   221 EINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPT 280
             ++     Q+ S  AP FQL  L LS+    G     FL HQ DL +VDLSH K+ G FPT
Sbjct:   441 KVGVIQVQTESSWAPLFQLKMLYLSN-CSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPT 499

Query:   281 WLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFS 340
             WL++NNT+L+ + L  +SL    QLPI  H  L +LDIS+N     I  +IG V P+L  
Sbjct:   500 WLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRF 557

Query:   341 LNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGH 400
             +N S N   G+IPSS G MK LQ+LD+S+N L G++P   + GC              G 
Sbjct:   558 MNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGK 617

Query:   401 MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ 460
             +FS++ NLT L  L L+GN+F G + + L K   L  L +++N  SG +P W+G ++RL 
Sbjct:   618 IFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLS 677

Query:   461 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520
             ++ M  N L+GP P    Q  W++++DIS N+ SGS+P   +  S+ ++ L  N   G L
Sbjct:   678 YLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTG-L 735

Query:   521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXX 580
               G  F +  L  LDL  N  +G I + +D  S+L  L+L +N+ +  +P          
Sbjct:   736 VPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVG 795

Query:   581 XXXXXXXXXHGSIPLCLDNTTLHESYNNSS-SLDKQFEISF 620
                       G IP C    +     N+ + SL   F+ S+
Sbjct:   796 LLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSY 836

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 177/493 (35%), Positives = 257/493 (52%)

Query:   128 LDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 187
             +  G+C L ++Q L+++ N L G LP CL ++T LR+LD+SSN+LTG++ SS L  L S+
Sbjct:   236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSL 294

Query:   188 EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSG 247
             E L L +N F+   S     N S L      +   + ++  S S   P FQLS ++L S 
Sbjct:   295 EYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSC 353

Query:   248 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPI 307
               +    P FL HQ DL +VDLS   ++G+ P+WLL NNTKL+ L L N+ L   FQ+P 
Sbjct:   354 NMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIPK 410

Query:   308 HSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367
              +H  L  LD+S N+F    P  IG + P L  LN S N    ++PSS GNM  +Q +DL
Sbjct:   411 SAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDL 469

Query:   368 SNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQ 427
             S N   G +P   V GC              G +F  + N TN+  L ++ N F G+I Q
Sbjct:   470 SRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQ 529

Query:   428 SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 487
              L     LE L ++NN+L+G IP W+G L  L  +++  N L+G IP+       LQ+LD
Sbjct:   530 GLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLD 589

Query:   488 ISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD 547
             +S N++SG +P      +   + L  N L G +      N   +  LDL  NR +G I +
Sbjct:   590 LSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLAN---VEILDLRNNRFSGKIPE 646

Query:   548 WVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPLCLDNTTLHESYN 607
             +++ +  +S L+L  NN  G++P                   +G+IP CL NT+      
Sbjct:   647 FIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFG-K 704

Query:   608 NSSSLDKQFEISF 620
               +S D  F ISF
Sbjct:   705 ECTSYDYDFGISF 717

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 187/556 (33%), Positives = 281/556 (50%)

Query:    57 SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSL- 115
             SLK+LS+ G  + G    +      ++E LD+       N S       ++  LK L L 
Sbjct:   174 SLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRN--RFNGSIPVRALFALRKLKALDLS 231

Query:   116 ---FGSILGTNSSRILDR---GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS 169
                F S +         +   G C   +++ L ++ N L G  P CL ++T LR+LD+SS
Sbjct:   232 DNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSS 291

Query:   170 NQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQS 229
             NQLTG++ S+ L +L S+E L L  N+F+   SL    N S+LK    D+   + E+ + 
Sbjct:   292 NQLTGNVPSA-LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEV-EF 349

Query:   230 HSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 289
              +   P FQL  ++L S   +    P FL HQ DL +VDLS  +++G FP+WLLENNTKL
Sbjct:   350 ETSWKPKFQLVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKL 407

Query:   290 RQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVE-IGDVLPSLFSLNISMNAL 348
               L L N+S    FQLP  +H  L  L++S N F  H+ ++  G +LP L  +N++ N  
Sbjct:   408 EVLLLQNNSFTS-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGF 464

Query:   349 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNL 408
              G++PSS  NMK ++ LDLS+N   G++P   + GC              G +F    N 
Sbjct:   465 QGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANF 524

Query:   409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH 468
             T L  + ++ N F G I +       L  L ++NN L+G IP W+G    L  + +  N 
Sbjct:   525 TRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNM 584

Query:   469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQ---VHLSKNMLHGQLKRGTF 525
             LEG IP     + +LQ+LD+S N +SG +P   H  S+     + L  N L G +     
Sbjct:   585 LEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLL 642

Query:   526 FNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXX 585
              N   ++ LDL  NRL+GN+ ++++    +S L+L  NN  G++P               
Sbjct:   643 LN---VIVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLS 698

Query:   586 XXXXHGSIPLCLDNTT 601
                 +GSIP CL NT+
Sbjct:   699 NNKFNGSIPSCLSNTS 714

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 177/544 (32%), Positives = 280/544 (51%)

Query:    69 NGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRIL 128
             + L +G GFP  + +    +E   +  N    Q+  + + +L+ L          S  + 
Sbjct:   112 DNLFKG-GFPVQELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQ 170

Query:   129 DRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 188
              +G+C L  LQ L ++ N   G +P C +  + LR+LD+SSN L+G I    +    S+E
Sbjct:   171 KQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISDFKSME 229

Query:   189 ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGY 248
              L L +N F+   SL      + LK F   +     +I +++       QLS + LS   
Sbjct:   230 YLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSH-C 288

Query:   249 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIH 308
               G I P FL++Q +L  +DLS+  ++G FPTWLLENNT+L+ L L N+S      LP  
Sbjct:   289 NLGKI-PGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-R 345

Query:   309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLS 368
             + +RL +LD+S NNF   +P ++G +L SL  LN+S N   G++PSS   M+ ++ +DLS
Sbjct:   346 TMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLS 405

Query:   369 NNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428
              N+ +G++P +L  GC              G +  ++ + T+L  L ++ N F G+IP++
Sbjct:   406 YNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRT 465

Query:   429 LSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI 488
             L    +L  + L+NN L+G IPRWLGN   L+ + +  N L+G IP     + +L +LD+
Sbjct:   466 LLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDL 524

Query:   489 SDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW 548
             S N +SGSLP          + L  N L G +   T +  Y L  LDL  N+L+GNI  +
Sbjct:   525 SGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIP-DTLW--YGLRLLDLRNNKLSGNIPLF 581

Query:   549 VDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPLCLDNTTLHES-YN 607
                 S +S ++L  NNL G++PV                  + SIP C+ N +     ++
Sbjct:   582 RSTPS-ISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHS 640

Query:   608 NSSS 611
             N+ S
Sbjct:   641 NADS 644

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 175/514 (34%), Positives = 251/514 (48%)

Query:    57 SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLF 116
             SL  LS+    + G +  +   +  +LE LD+ G  I  +    +     +  LK L L 
Sbjct:   146 SLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVREF--PYLKKLKALDLS 203

Query:   117 GSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
              +  G  SS    +  C + +LQ L++   +  G LP C  N+  LR LD+SSNQLTG+I
Sbjct:   204 SN--GIYSSMEW-QVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNI 260

Query:   177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
               S    L S+E L LS+N F+   SL P  N ++LK F   + +   ++ +  S   P 
Sbjct:   261 PPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQV-KIESTWQPL 318

Query:   237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             FQLS L L     +    P FL +Q +L  VDLS  +++G  PTWLLENN +L  L L N
Sbjct:   319 FQLSVLVLRLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKN 376

Query:   297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSF 356
             +S    FQ+P   H  L +LD S NN  G  P   G VLP+L  +N S N   G+ PSS 
Sbjct:   377 NSFT-IFQMPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSM 434

Query:   357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQL 416
             G M  +  LDLS N+L+GE+P+  V  C              GH   R  N T+L  L++
Sbjct:   435 GEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRI 494

Query:   417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE 476
               N F G+I   L     L  L ++NN L G++P  L     L  + +  N L G +P  
Sbjct:   495 NNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-S 553

Query:   477 FCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
                LD   +L + +NN +G +P  F   S++ + L  N L G + +  F ++  +  L L
Sbjct:   554 HVSLD--NVLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLL 608

Query:   537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVP 570
               N L G I   +   S++  L L  N L G +P
Sbjct:   609 RGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIP 642

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 4.7e-61, P = 4.7e-61
 Identities = 191/573 (33%), Positives = 281/573 (49%)

Query:    58 LKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIG-ESMPSLKYLSLF 116
             LKNL+ +  E+  L R           HL+   AL      F  ++  + +  L  L + 
Sbjct:   183 LKNLTKL--ELLDLSRSGYNGSIPEFTHLEKLKALDLSANDFSSLVELQELKVLTNLEVL 240

Query:   117 GSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
             G         I     C + +L+ L++  N   G LP CL N+  LR+LD+SSNQL+G++
Sbjct:   241 GLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNL 300

Query:   177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSF-YADNNEINAEITQSHSLTAP 235
              +S    L S+E L LS+N+F+   SL P  N ++LK F  +  +E+    T+S+ L  P
Sbjct:   301 PAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWL--P 357

Query:   236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLV 295
              FQL+  +L      G I P FL +Q +L  VDLS  +++G+ PTWLLENN +L+ L L 
Sbjct:   358 KFQLTVAALPF-CSLGKI-PNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLK 415

Query:   296 NDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS 355
             N+S    FQ+P   HK L +LD S N+  G +P  IG VLP L  +N S N   G++PSS
Sbjct:   416 NNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSS 473

Query:   356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQ 415
              G M  +  LDLS N+ +GE+P  L+ GC              G +      LT+L  L+
Sbjct:   474 MGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLR 533

Query:   416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLG-NLTRLQHIMMPKNHLEGPIP 474
             +  N F GEI   L     L     +NN L+G I   +  + + L  +++  N LEG +P
Sbjct:   534 MHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLP 593

Query:   475 VEFCQLDWLQILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVT 533
                  +  L  LD+S N +SG LPS   + +   ++ L  N   G L      N+Y    
Sbjct:   594 PSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAY---I 650

Query:   534 LDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSI 593
             LDL  N+L+G+I  +V+    ++ L+ G NNL G +P                   +G I
Sbjct:   651 LDLRNNKLSGSIPQFVNTGKMITLLLRG-NNLTGSIPRKLCDLTSIRLLDLSDNKLNGVI 709

Query:   594 PLCLDN--TTLHESYNNSS-SLDKQFEISFSIE 623
             P CL++  T L E    S  S +  F  S  +E
Sbjct:   710 PPCLNHLSTELGEGIGLSGFSQEISFGDSLQME 742

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 3.7e-53, P = 3.7e-53
 Identities = 185/609 (30%), Positives = 265/609 (43%)

Query:    11 YLSSNNFTDIATATQELHNFTNLEYXXXXXXXXXXXXXXXXXXXFPSLKNLSMIGCEVNG 70
             Y   N F D     + L    NL+                      SL  L +   E++G
Sbjct:   104 YNEFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAA-TSLTTLILTYNEMDG 162

Query:    71 LVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDR 130
                 +G     +LE LD+      LN S  ++I   +  LK L L  +    +SS  L  
Sbjct:   163 PFPIKGLKDLTNLELLDLRAN--KLNGSMQELI--HLKKLKALDLSSNKF--SSSMELQE 216

Query:   131 GLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 189
              L +L++L+VL +A N + G +P      + +LR LD+  N   G I    L  L  +  
Sbjct:   217 -LQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRV 274

Query:   190 LYLSNNHFQ--IPISLEPFFNHSRLKSFYADNN-EINAEITQSHSLTAPNFQ--LSRLSL 244
             L LS+N     +P S     +   L    +DNN + +  +    +LT   F   L   SL
Sbjct:   275 LDLSSNQLSGDLPSSFSSLESLEYLS--LSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSL 332

Query:   245 SSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQ 304
                       P FL +Q  L  VDLS   ++G  PTWLL NN +L  L L N+S    F 
Sbjct:   333 EK-------IPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFP 384

Query:   305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
             +P   H  L + D S NN  G  P ++   LP+L  LN S N   G  P+S G MK +  
Sbjct:   385 IPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISF 442

Query:   365 LDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGE 424
             LDLS N+ +G++P   V GCV             G    R  N  +L  L+++ N F G 
Sbjct:   443 LDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGN 502

Query:   425 IPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 484
             I   LS   +L  L ++NN LSG IPRWL     L ++++  N LEG IP     + +L 
Sbjct:   503 IGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLS 562

Query:   485 ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN 544
              LD+S N  SG+LPS         + L  N   G +   T   S  +  LDL  N+L+G+
Sbjct:   563 FLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIP-DTLLKSVQI--LDLRNNKLSGS 619

Query:   545 ISDWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPLCLDNTTLHE 604
             I  + D    ++ L+L  NNL G +P                   +G IP CL N +   
Sbjct:   620 IPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGR 678

Query:   605 SYNNSSSLD 613
                ++ +L+
Sbjct:   679 LQEDAMALN 687

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 3.7e-47, Sum P(2) = 3.7e-47
 Identities = 163/513 (31%), Positives = 244/513 (47%)

Query:    61 LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGA-LIALNTSFLQIIGESMPSLKYLSLFGSI 119
             L++ G  + G +    F  F +L HLD+    L+    + L     ++ SL+ L LF + 
Sbjct:    76 LNLTGLGLTGSI-SPWFGRFDNLIHLDLSSNNLVGPIPTALS----NLTSLESLFLFSNQ 130

Query:   120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
             L   +  I  + L SLV+++ L I  N+L G +P  L N+ +L++L ++S +LTG I S 
Sbjct:   131 L---TGEIPSQ-LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ 186

Query:   180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
              L  L  ++ L L +N+ + PI  E   N S L  F A  N +N  I         N ++
Sbjct:   187 -LGRLVRVQSLILQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELG-RLENLEI 243

Query:   240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
               L+ +S  G+    P  L     L+Y+ L   ++ G  P  L +    L+ L L  ++L
Sbjct:   244 LNLANNSLTGE---IPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN-LQTLDLSANNL 299

Query:   300 GGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNM 359
              G       +  +L  L ++NN+  G +P  I     +L  L +S   L G IP      
Sbjct:   300 TGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKC 359

Query:   360 KFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGN 419
             + L+ LDLSNN L G IPE L    V             G +     NLTNL+WL L  N
Sbjct:   360 QSLKQLDLSNNSLAGSIPEALFE-LVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHN 418

Query:   420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479
             +  G++P+ +S    LE LFL  N  SG+IP+ +GN T L+ I M  NH EG IP    +
Sbjct:   419 NLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR 478

Query:   480 LDWLQILDISDNNISGSLPSCF---HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
             L  L +L +  N + G LP+     H L++  + L+ N L G +     F    L  L L
Sbjct:   479 LKELNLLHLRQNELVGGLPASLGNCHQLNI--LDLADNQLSGSIPSSFGFLK-GLEQLML 535

Query:   537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEV 569
               N L GN+ D +  L  L+ + L HN L G +
Sbjct:   536 YNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 2.5e-45, Sum P(2) = 2.5e-45
 Identities = 134/447 (29%), Positives = 220/447 (49%)

Query:    57 SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLF 116
             +L+ L +    + G + G      K+L+ L ++  LI    +    IG S+  L  L+L 
Sbjct:   155 NLQRLDLSRNVIGGTLSGD-IKELKNLQELILDENLIG--GAIPSEIG-SLVELLTLTLR 210

Query:   117 GSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
              ++   NSS  +   +  L  L+ +++  N L   +P  + N+ +L  L +S N+L+G I
Sbjct:   211 QNMF--NSS--IPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGI 266

Query:   177 SSSPLVHLTSIEELYLSNNHF---QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLT 233
              SS + +L ++E L L NN+    +IP +    F   +LK    + N  N     ++   
Sbjct:   267 PSS-IHNLKNLETLQLENNNGLSGEIPAAW--LFGLQKLKVLRLEGN--NKLQWNNNGYV 321

Query:   234 APNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLS 293
              P F+L+ LSL S   +G I P +L +Q  L Y+DLS  ++ G FP WL +   K+R ++
Sbjct:   322 FPQFKLTHLSLRSCGLEGNI-PDWLKNQTALVYLDLSINRLEGRFPKWLAD--LKIRNIT 378

Query:   294 LVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIP 353
             L ++ L G     +     L  L +S NNF G IP  IG+    +  L +S N   GS+P
Sbjct:   379 LSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE--SQVMVLMLSENNFSGSVP 436

Query:   354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRW 413
              S   + FL++LDLS N L+GE P       +             G + +     T++  
Sbjct:   437 KSITKIPFLKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFS--GDVPAYFGGSTSM-- 492

Query:   414 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH-LEGP 472
             L +  N+F GE PQ+      L  L L++N +SG +   +  L+    ++  +N+ L+G 
Sbjct:   493 LLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGS 552

Query:   473 IPVEFCQLDWLQILDISDNNISGSLPS 499
             IP     L  L++LD+S+NN+ G LPS
Sbjct:   553 IPEGISNLTSLKVLDLSENNLDGYLPS 579

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 2.6e-45, P = 2.6e-45
 Identities = 154/488 (31%), Positives = 236/488 (48%)

Query:    91 ALIALNTSFLQIIGE---SMPS-LKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYN 146
             +L   N +  ++ GE    +PS L++L +  +   T S +I   GL +L  LQ+LN++YN
Sbjct:   141 SLEVFNVAGNRLSGEIPVGLPSSLQFLDISSN---TFSGQI-PSGLANLTQLQLLNLSYN 196

Query:   147 DLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ--IPISLE 204
              L G +P  L N+ SL+ L +  N L G++ S+ + + +S+  L  S N     IP +  
Sbjct:   197 QLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSA-ISNCSSLVHLSASENEIGGVIPAAYG 255

Query:   205 PFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYH-QHD 263
                   +L+     NN  +   T   SL   N  L+ + L        + P+   + +  
Sbjct:   256 AL---PKLEVLSLSNNNFSG--TVPFSLFC-NTSLTIVQLGFNAFSDIVRPETTANCRTG 309

Query:   264 LEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNF 323
             L+ +DL   +++G FP WL  N   L+ L +  +   G     I + KRL  L ++NN+ 
Sbjct:   310 LQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSL 368

Query:   324 RGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG 383
              G IPVEI     SL  L+   N+L G IP   G MK L++L L  N  +G +P  +V  
Sbjct:   369 TGEIPVEIKQC-GSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMV-N 426

Query:   384 CVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 443
                            G        LT+L  L L GN F G +P S+S    L  L L+ N
Sbjct:   427 LQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGN 486

Query:   444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHP 503
               SG+IP  +GNL +L  + + K ++ G +PVE   L  +Q++ +  NN SG +P  F  
Sbjct:   487 GFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSS 546

Query:   504 L-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562
             L S+  V+LS N   G++ + TF     LV+L LS N ++G+I   +   S L  L L  
Sbjct:   547 LVSLRYVNLSSNSFSGEIPQ-TFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRS 605

Query:   563 NNLEGEVP 570
             N L G +P
Sbjct:   606 NRLMGHIP 613

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	628
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  191 bits (487), Expect = 1e-51
 Identities = 170/496 (34%), Positives = 263/496 (53%), Gaps = 24/496 (4%)

Query: 103 IGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSL 162
           I  +  SL+YL+L  +    N +  + RG  S+ +L+ L+++ N L G +P  + + +SL
Sbjct: 113 IFTTSSSLRYLNLSNN----NFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF--QIPISLEPFFNHSRLKSFYADNN 220
           ++LD+  N L G I +S L +LTS+E L L++N    QIP  L    +   LK  Y   N
Sbjct: 167 KVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYN 222

Query: 221 EINAEI-TQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 279
            ++ EI  +   LT+    L+ L L      G I P  L +  +L+Y+ L   K++G  P
Sbjct: 223 NLSGEIPYEIGGLTS----LNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIP 277

Query: 280 TWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339
             +  +  KL  L L ++SL G     +   + L +L + +NNF G IPV +   LP L 
Sbjct: 278 PSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQ 335

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG 399
            L +  N   G IP + G    L +LDLS N+LTGEIPE L     NL  L L +NSLEG
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEG 394

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
            +        +LR ++L+ N F GE+P   +K  ++  L ++NN+L G+I     ++  L
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHG 518
           Q + + +N   G +P +      L+ LD+S N  SG++P     LS + Q+ LS+N L G
Sbjct: 455 QMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 519 QLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 578
           ++      +   LV+LDLS+N+L+G I      +  LS L L  N L GE+P  L  +  
Sbjct: 514 EIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 579 LQLLDLSNNSLHGSIP 594
           L  +++S+N LHGS+P
Sbjct: 573 LVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  180 bits (458), Expect = 6e-48
 Identities = 172/513 (33%), Positives = 250/513 (48%), Gaps = 43/513 (8%)

Query: 110 LKYLSLFGS---------ILGTNSSRILDRGLCS-------------LVHLQVLNIAYND 147
           LKYLS + S         I   NSSR++   L               L ++Q +N++ N 
Sbjct: 45  LKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104

Query: 148 LRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF--QIPISLE 204
           L G +P  +   + SLR L++S+N  TGSI    + +L   E L LSNN    +IP  + 
Sbjct: 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNL---ETLDLSNNMLSGEIPNDIG 161

Query: 205 PFFNHSRLKSFYADNNEINAEITQS-HSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHD 263
            F   S LK      N +  +I  S  +LT+  F    L+L+S    G I P+ L     
Sbjct: 162 SF---SSLKVLDLGGNVLVGKIPNSLTNLTSLEF----LTLASNQLVGQI-PRELGQMKS 213

Query: 264 LEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNF 323
           L+++ L +  ++GE P  +    T L  L LV ++L GP    + + K L  L +  N  
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 324 RGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG 383
            G IP  I   L  L SL++S N+L G IP     ++ L+IL L +N+ TG+IP  L   
Sbjct: 273 SGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-S 330

Query: 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 443
              L+ L L +N   G +        NL  L L  N+  GEIP+ L     L  L L +N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHP 503
           SL G+IP+ LG    L+ + +  N   G +P EF +L  +  LDIS+NN+ G + S    
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 504 L-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562
           + S++ + L++N   G L     F S  L  LDLS N+ +G +   +  LS+L  L L  
Sbjct: 451 MPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 563 NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595
           N L GE+P +L    +L  LDLS+N L G IP 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (352), Expect = 2e-34
 Identities = 157/529 (29%), Positives = 254/529 (48%), Gaps = 64/529 (12%)

Query: 4   FPSLNTLYLSSNNFT-----DIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSL 58
            P + T+ LS+N  +     DI T +      ++L YL L +++   S+ +       +L
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTS------SSLRYLNLSNNNFTGSIPRGSIPNLETL 145

Query: 59  KNLSMIGCEVNGLVRG---QGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSL 115
            +LS      N ++ G        F SL+ LD+ G ++      +     ++ SL++L+L
Sbjct: 146 -DLS------NNMLSGEIPNDIGSFSSLKVLDLGGNVL---VGKIPNSLTNLTSLEFLTL 195

Query: 116 FGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGS 175
             + L     R L +    +  L+ + + YN+L G +P+ +  +TSL  LD+  N LTG 
Sbjct: 196 ASNQLVGQIPRELGQ----MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 176 ISSSPLVHLTSIEELYLSNNHF--QIPISLEPFFNHSRLKSFYADNNEINAEITQ----- 228
           I SS L +L +++ L+L  N     IP S+   F+  +L S    +N ++ EI +     
Sbjct: 252 IPSS-LGNLKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 229 ---------SHSLTA---------PNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLS 270
                    S++ T          P  Q+  L L S    G I PK L   ++L  +DLS
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQV--LQLWSNKFSGEI-PKNLGKHNNLTVLDLS 364

Query: 271 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVE 330
              + GE P  L  ++  L +L L ++SL G     + + + L  + + +N+F G +P E
Sbjct: 365 TNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Query: 331 IGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESL 390
               LP ++ L+IS N L G I S   +M  LQ+L L+ N   G +P+    G   LE+L
Sbjct: 424 FTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENL 480

Query: 391 ALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP 450
            LS N   G +  +  +L+ L  L+L  N   GEIP  LS C  L  L L++N LSG+IP
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 451 RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 499
                +  L  + + +N L G IP     ++ L  ++IS N++ GSLPS
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 5e-12
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 292 LSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS 351
           L L N  L G     I   + L  +++S N+ RG+IP  +G +  SL  L++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 352 IPSSFGNMKFLQILDLSNNHLTGEIPEHL 380
           IP S G +  L+IL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.3 bits (167), Expect = 7e-12
 Identities = 109/379 (28%), Positives = 160/379 (42%), Gaps = 44/379 (11%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +G   SLN L L  NN T        L N  NL+YL L  + L   +  SI S    L+ 
Sbjct: 232 IGGLTSLNHLDLVYNNLT--GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS----LQK 285

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLF---- 116
           L  +    N L  G+       L++L++        T  + +   S+P L+ L L+    
Sbjct: 286 LISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 117 -GSI--------------LGTNS-SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMT 160
            G I              L TN+ +  +  GLCS  +L  L +  N L G +P  L    
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404

Query: 161 SLRILDVSSNQLTGSISSS----PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFY 216
           SLR + +  N  +G + S     PLV+      L +SNN+ Q  I+    ++   L+   
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYF-----LDISNNNLQGRIN-SRKWDMPSLQMLS 458

Query: 217 ADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 276
              N+    +  S        +L  L LS     G + P+ L    +L  + LS  K++G
Sbjct: 459 LARNKFFGGLPDSFGSK----RLENLDLSRNQFSGAV-PRKLGSLSELMQLKLSENKLSG 513

Query: 277 EFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLP 336
           E P  L  +  KL  L L ++ L G           L  LD+S N   G IP  +G+V  
Sbjct: 514 EIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV-E 571

Query: 337 SLFSLNISMNALDGSIPSS 355
           SL  +NIS N L GS+PS+
Sbjct: 572 SLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 26/114 (22%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           L + N   RG IP +I   L  L S+N+S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSL 429
           IPE L                           LT+LR L L GN   G +P +L
Sbjct: 482 IPESL-------------------------GQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 19/126 (15%)

Query: 406 FNLTNLRW----LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQH 461
           F+ T  +W    L L+     G IP  +SK   L+ + L+ NS+ G IP  LG++T L+ 
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 462 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLK 521
           + +  N   G IP    QL  L+IL+++ N++SG +P+                L G+L 
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA---------------LGGRLL 515

Query: 522 RGTFFN 527
               FN
Sbjct: 516 HRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 8e-08
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
           L HLQ +N++ N +RG++P  L ++TSL +LD+S N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 195 N 195
           N
Sbjct: 500 N 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 33/88 (37%), Positives = 46/88 (52%)

Query: 387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
           ++ L L N  L G + +    L +L+ + L GN   G IP SL     LE L L+ NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIP 474
           G IP  LG LT L+ + +  N L G +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 516 LHGQLKRGTFFNSYS----LVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPV 571
           L  Q  RG   N  S    L +++LS N + GNI   +  ++ L  L L +N+  G +P 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 572 QLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNN 608
            L +L  L++L+L+ NSL G +P  L    LH +  N
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 534 LDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSI 593
           L L    L G I + +  L  L  + L  N++ G +P  L  +  L++LDLS NS +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 594 PLCLDNTTLHESYN-NSSSL 612
           P  L   T     N N +SL
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 5/79 (6%)

Query: 103 IGESMPSLKYLSLFGSI-LGTNSSR-ILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMT 160
           I   +  L++L    SI L  NS R  +   L S+  L+VL+++YN   GS+P  L  +T
Sbjct: 434 IPNDISKLRHLQ---SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 161 SLRILDVSSNQLTGSISSS 179
           SLRIL+++ N L+G + ++
Sbjct: 491 SLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 25/60 (41%), Positives = 29/60 (48%)

Query: 530 SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
           +L +LDLS NRL         GL  L  L L  NNL    P     L  L+ LDLS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNA 347
            L+ ++L  +S+ G     + S   L +LD+S N+F G IP  +G  L SL  LN++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 348 LDGSIPSSFG 357
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 541 LNGNISDW-VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599
            +     W +DGL       L +  L G +P  + KL  LQ ++LS NS+ G+IP  L +
Sbjct: 411 FDSTKGKWFIDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS 464

Query: 600 TT----LHESYN 607
            T    L  SYN
Sbjct: 465 ITSLEVLDLSYN 476

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
           +L+ L+++ N L          + +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 197 F 197
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNS 396
           +L SL++S N L      +F  +  L++LDLS N+LT  I      G  +L SL LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 397 L 397
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG---HMFSRNFNLTNLRWLQLEG 418
           L+ LDLSNN LT  IP+    G  NL+ L LS N+L       FS    L +LR L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 419 NHF 421
           N+ 
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE 424
           L+LS+N L        +   ++L+ L+ S  S      +   NL  L  L L  N     
Sbjct: 52  LNLSSNTLLLLPSS--LSRLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSN 108

Query: 425 IPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 484
           I   L +   L  L L+NN+++  IP  +G L      +   ++    +P     L  L+
Sbjct: 109 IS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLK 166

Query: 485 ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN 544
            LD+S N++S       +  ++  + LS N +             +L  LDLS N +   
Sbjct: 167 NLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSIIEL 224

Query: 545 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 587
           +S  +  L  LS L L +N LE ++P  +  L+ L+ LDLSNN
Sbjct: 225 LSS-LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 509 VHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
           + LS N L   +  G F    +L  LDLS N L     +   GL  L  L L  NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
            L  LD+SNN     IP      LP+L  L++S N L    P +F  +  L+ LDLS N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 372 L 372
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	628
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.07
KOG4341	483	consensus F-box protein containing LRR [General fu	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG4341	483	consensus F-box protein containing LRR [General fu	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PLN03150	623	hypothetical protein; Provisional	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
PLN03150	623	hypothetical protein; Provisional	98.73
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.62
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.37
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
PRK15386	426	type III secretion protein GogB; Provisional	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.64
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.97
KOG4308	478	consensus LRR-containing protein [Function unknown	95.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.33
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.02
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.34
KOG4308	478	consensus LRR-containing protein [Function unknown	91.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.67
smart00370	26	LRR Leucine-rich repeats, outliers.	91.67
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.33
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.56
smart00370	26	LRR Leucine-rich repeats, outliers.	85.56
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.91
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.9
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	80.91

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.3e-53  Score=477.59  Aligned_cols=522  Identities=31%  Similarity=0.462  Sum_probs=389.9

Q ss_pred             CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739           31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL  110 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  110 (628)
                      .+++.|+++++.+++..+..+.. +++|+.|++++|.+.+.+|...+.++++|++|++++|  .+.+..+.  +. +++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n--~l~~~~p~--~~-l~~L  142 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN--NFTGSIPR--GS-IPNL  142 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC--ccccccCc--cc-cCCC
Confidence            35667777776666666666666 6777777777776665555544556777777777766  44443332  22 6677


Q ss_pred             cEEeeccccCC-CCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccE
Q 039739          111 KYLSLFGSILG-TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE  189 (628)
Q Consensus       111 ~~L~l~~~~~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~  189 (628)
                      ++|++++|.+. .    ++ ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|. .+.++++|+.
T Consensus       143 ~~L~Ls~n~~~~~----~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~  216 (968)
T PLN00113        143 ETLDLSNNMLSGE----IP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKW  216 (968)
T ss_pred             CEEECcCCccccc----CC-hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccE
Confidence            77777776663 2    33 4566777777777777776666677777777777777777776655555 5667777777


Q ss_pred             EEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEc
Q 039739          190 LYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDL  269 (628)
Q Consensus       190 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  269 (628)
                      |++++|.+.+..+ ..+..+++|++|++++|.+.+                            ..|..+..+++|+.|++
T Consensus       217 L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~----------------------------~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        217 IYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTG----------------------------PIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             EECcCCccCCcCC-hhHhcCCCCCEEECcCceecc----------------------------ccChhHhCCCCCCEEEC
Confidence            7777776654333 345666666666666554432                            23445666677777777


Q ss_pred             cCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCC
Q 039739          270 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD  349 (628)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~  349 (628)
                      ++|.+.+..|..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+.
T Consensus       268 ~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~  345 (968)
T PLN00113        268 YQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFS  345 (968)
T ss_pred             cCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCc
Confidence            7777766666665 56777777777777777666666777788888888888777777766655 778888888888887


Q ss_pred             CcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccc
Q 039739          350 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSL  429 (628)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  429 (628)
                      +..|..+..+++|+.|++++|++.+.++..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+
T Consensus       346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~  424 (968)
T PLN00113        346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF  424 (968)
T ss_pred             CcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence            77777788888888888888887766665443 36788888888888877777777788888888888888887788888


Q ss_pred             cCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccE
Q 039739          430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQ  508 (628)
Q Consensus       430 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~  508 (628)
                      ..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..|..+. +++|+.
T Consensus       425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  503 (968)
T PLN00113        425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQ  503 (968)
T ss_pred             hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCE
Confidence            888888888888888887777777788888888888888876666554 457888888888888877776554 778888


Q ss_pred             EecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCc
Q 039739          509 VHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS  588 (628)
Q Consensus       509 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~  588 (628)
                      |++++|.+.+.+|.. +.++++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|+.+++++|+
T Consensus       504 L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        504 LKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             EECcCCcceeeCChH-HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence            899999888777776 8889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccc
Q 039739          589 LHGSIPLCLD  598 (628)
Q Consensus       589 ~~~~ip~~~~  598 (628)
                      +.+.+|+.-.
T Consensus       583 l~~~~p~~~~  592 (968)
T PLN00113        583 LHGSLPSTGA  592 (968)
T ss_pred             ceeeCCCcch
Confidence            9999997644

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.8e-51  Score=462.34  Aligned_cols=512  Identities=31%  Similarity=0.449  Sum_probs=456.7

Q ss_pred             CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccC-CCCCCcccccccc
Q 039739           55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL-GTNSSRILDRGLC  133 (628)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~  133 (628)
                      ..+++.|+++++.+.+..+. .|..+++|++|++++|  .+.+.++..+...+++|++|++++|.+ +.    ++.   .
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~----~p~---~  137 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTGS----IPR---G  137 (968)
T ss_pred             CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCccccc----cCc---c
Confidence            35799999999988876654 7899999999999999  677778877774499999999999988 44    442   5


Q ss_pred             CCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCccc
Q 039739          134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLK  213 (628)
Q Consensus       134 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  213 (628)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+ ..+..+++|+
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~  215 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLK  215 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCcc
Confidence            688999999999999988999999999999999999999877877 79999999999999998875443 5678888999


Q ss_pred             EEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEE
Q 039739          214 SFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLS  293 (628)
Q Consensus       214 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  293 (628)
                      .|++++|.+.+                            .+|..+..+++|++|++++|.+.+..|..+ ..+++|+.|+
T Consensus       216 ~L~L~~n~l~~----------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~  266 (968)
T PLN00113        216 WIYLGYNNLSG----------------------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLF  266 (968)
T ss_pred             EEECcCCccCC----------------------------cCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEE
Confidence            99988776532                            355667888999999999999988888776 7899999999


Q ss_pred             eecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCccc
Q 039739          294 LVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT  373 (628)
Q Consensus       294 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  373 (628)
                      +++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|+.|++.+|.+.+..|..+..+++|+.|++++|.+.
T Consensus       267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS  345 (968)
T ss_pred             CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence            9999998888888899999999999999998888887765 899999999999999889999999999999999999998


Q ss_pred             CccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccc
Q 039739          374 GEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWL  453 (628)
Q Consensus       374 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  453 (628)
                      +.+|... ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+
T Consensus       346 ~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~  424 (968)
T PLN00113        346 GEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF  424 (968)
T ss_pred             CcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence            6677644 458999999999999988888888889999999999999998999999999999999999999998899999


Q ss_pred             cCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccE
Q 039739          454 GNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVT  533 (628)
Q Consensus       454 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  533 (628)
                      ..++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+...+|+.|++++|++.+.++.. +.++++|+.
T Consensus       425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~  503 (968)
T PLN00113        425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQ  503 (968)
T ss_pred             hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh-hhhhhccCE
Confidence            9999999999999999988888889999999999999999988888888899999999999998887776 889999999


Q ss_pred             EECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccc----ccccccCC
Q 039739          534 LDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT----LHESYNNS  609 (628)
Q Consensus       534 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~----~~~~~~~~  609 (628)
                      |++++|.+.+.+|..+..+++|+.|++++|.+++.+|..|..+++|+.|++++|++++.+|+.+.+++    +...+|+.
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999988754    44445554


Q ss_pred             c
Q 039739          610 S  610 (628)
Q Consensus       610 ~  610 (628)
                      .
T Consensus       584 ~  584 (968)
T PLN00113        584 H  584 (968)
T ss_pred             e
Confidence            3

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=279.19  Aligned_cols=381  Identities=24%  Similarity=0.244  Sum_probs=277.4

Q ss_pred             CcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEec
Q 039739          138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYA  217 (628)
Q Consensus       138 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  217 (628)
                      -+.|++++|.+...-+..|.++++|+++++..|.++ .+|. ..+-..+|+.|++.+|.+. .+..+.+..++.|+.+++
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            355888888777666777778888888888888777 7776 3444455778887777665 333344444555555555


Q ss_pred             cCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecC
Q 039739          218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVND  297 (628)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  297 (628)
                      +.|.+                                                    . .++..-+..-.++++|++..|
T Consensus       157 SrN~i----------------------------------------------------s-~i~~~sfp~~~ni~~L~La~N  183 (873)
T KOG4194|consen  157 SRNLI----------------------------------------------------S-EIPKPSFPAKVNIKKLNLASN  183 (873)
T ss_pred             hhchh----------------------------------------------------h-cccCCCCCCCCCceEEeeccc
Confidence            44433                                                    2 122111223356777777777


Q ss_pred             CCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccc
Q 039739          298 SLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP  377 (628)
Q Consensus       298 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  377 (628)
                      ++++.....|.++..|..|+|++|.++ .+|...++.+++|+.|+|..|.+...-.-.|.++++|+.|.+..|.+. .+.
T Consensus       184 ~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~  261 (873)
T KOG4194|consen  184 RITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLD  261 (873)
T ss_pred             cccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-ccc
Confidence            777776777888888999999999988 888888887889999999888887444556888888888888888887 777


Q ss_pred             hhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCC
Q 039739          378 EHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT  457 (628)
Q Consensus       378 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  457 (628)
                      .++|-++.++++|+++.|++.......+.++.+|+.|+++.|.|..+-+..+..+++|++|++++|.+....+..|..+.
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence            77777788888888888887766556666788888888888888777777778888888888888888766677777788


Q ss_pred             CcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECC
Q 039739          458 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS  537 (628)
Q Consensus       458 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  537 (628)
                      .|++|.+++|++.......|..+++|+.||++.|.+...+.+                     ...+|.++++|+.|++.
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED---------------------aa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED---------------------AAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec---------------------chhhhccchhhhheeec
Confidence            888888888887766666677788888888887776632221                     11236677888888888


Q ss_pred             CcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEEC------CCCcccccccccccc
Q 039739          538 YNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL------SNNSLHGSIPLCLDN  599 (628)
Q Consensus       538 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l------~~~~~~~~ip~~~~~  599 (628)
                      +|++.......|..+.+|+.|+|.+|.|-..-|+.|..+ .|++|-+      ..|++. ++|+.+..
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~-Wl~qWl~~  466 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK-WLAQWLYR  466 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH-HHHHHHHh
Confidence            888876666778888888888888888876778888877 7777755      456665 66665544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-34  Score=277.39  Aligned_cols=361  Identities=25%  Similarity=0.288  Sum_probs=315.9

Q ss_pred             cceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEE
Q 039739          238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD  317 (628)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  317 (628)
                      .-+.|++ .++.+...-+..+.++++|+.+++.+|.+. .+|... +....++.|.+.+|.+.......+..++.|++|+
T Consensus        79 ~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            4445555 555566666778899999999999999887 667653 4455699999999999988888899999999999


Q ss_pred             ccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCcc
Q 039739          318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL  397 (628)
Q Consensus       318 l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  397 (628)
                      |+.|.|. .++...++.-.+++.|+|..|.|+..-...|..+.+|..|.++.|+++ .+|...|+.+++|+.|++..|.+
T Consensus       156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence            9999998 777766665578999999999999877778999999999999999999 99999999999999999999998


Q ss_pred             CCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccc
Q 039739          398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEF  477 (628)
Q Consensus       398 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  477 (628)
                      ...-...|.++++|+.|.+..|++......+|..+.++++|++..|.+...-..++.++++|++|+++.|.|....+.++
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence            76556788899999999999999987778899999999999999999987777889999999999999999999999999


Q ss_pred             cCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc---hhhcCCC
Q 039739          478 CQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS---DWVDGLS  553 (628)
Q Consensus       478 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~  553 (628)
                      ..+++|++|++++|+++.-.+..+. +.+|++|+|++|.++ .+..++|..+.+|+.|||+.|.++..+.   ..|..++
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            9999999999999999977666665 899999999999995 7778889999999999999998865433   4578899


Q ss_pred             CCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccccccccccc
Q 039739          554 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHE  604 (628)
Q Consensus       554 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~  604 (628)
                      +|+.|++.||++...-...|..+++|+.|+|.+|.|...=|..|++..++.
T Consensus       393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~  443 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE  443 (873)
T ss_pred             hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence            999999999999955566899999999999999999977788998865443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=2.4e-34  Score=265.01  Aligned_cols=476  Identities=23%  Similarity=0.329  Sum_probs=297.4

Q ss_pred             CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCC
Q 039739           81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMT  160 (628)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~  160 (628)
                      ..|+.+.++++.+   ......+.+ +..+.+|++.++....    .|+ +++.+..++.++.++|.+. .+|..+....
T Consensus        45 v~l~~lils~N~l---~~l~~dl~n-L~~l~vl~~~~n~l~~----lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~  114 (565)
T KOG0472|consen   45 VDLQKLILSHNDL---EVLREDLKN-LACLTVLNVHDNKLSQ----LPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLI  114 (565)
T ss_pred             cchhhhhhccCch---hhccHhhhc-ccceeEEEeccchhhh----CCH-HHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence            4566677776632   223334444 6777777777776655    553 6777777777777777776 6677777777


Q ss_pred             CCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739          161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS  240 (628)
Q Consensus       161 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  240 (628)
                      +|+.++.++|.+. .+++ .++.+..++.++..+|++..  ..+.+..+.++..+++.+|.+....+.    .+....++
T Consensus       115 ~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~m~~L~  186 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPEN----HIAMKRLK  186 (565)
T ss_pred             hhhhhhcccccee-ecCc-hHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHH----HHHHHHHH
Confidence            7777777777776 5666 57777777777777776652  223456666677777666655432211    11122444


Q ss_pred             eeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccC
Q 039739          241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISN  320 (628)
Q Consensus       241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  320 (628)
                      +++.  +...-+.+|..++.+.+|..|++..|++. .+|+.  ..|..|+++.+..+.+.-.-......++.+..|++++
T Consensus       187 ~ld~--~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef--~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  187 HLDC--NSNLLETLPPELGGLESLELLYLRRNKIR-FLPEF--PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             hccc--chhhhhcCChhhcchhhhHHHHhhhcccc-cCCCC--CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence            4444  22333345555555555555555555554 44422  4555555555555544332222333555555566655


Q ss_pred             CcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcC-----CccccEEE----
Q 039739          321 NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG-----CVNLESLA----  391 (628)
Q Consensus       321 ~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~L~~L~----  391 (628)
                      |.++ .+|++++. +.+|++|++++|.++ .+|..++++ .|+.|.+.||.+. ++-..+..+     ++.|+.-.    
T Consensus       262 Nklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  262 NKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             cccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCC
Confidence            5554 55555554 455556666555555 444555555 5555555555543 222221110     11122100    


Q ss_pred             ccCCc------cC--CcccccccCCCCCcEEEccCccCcCcccccccCCC---cccEEEccCCcCCCccCccccCCCCcc
Q 039739          392 LSNNS------LE--GHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF---VLEGLFLNNNSLSGKIPRWLGNLTRLQ  460 (628)
Q Consensus       392 l~~~~------l~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~L~  460 (628)
                      ++...      .+  ...+.....+-+.+.|++++-+++ .+|...+...   -....+++.|.+. +.|..+..+..+.
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv  414 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV  414 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence            00000      00  011112234556788888887777 4453333322   3788899999887 6677666665554


Q ss_pred             e-EECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCc
Q 039739          461 H-IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN  539 (628)
Q Consensus       461 ~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  539 (628)
                      + +.++.|.+. ..|..++.+++|..|++++|.+-+...+.+...+|+.++++.|++ ..+|.. +.-+..++.+-.++|
T Consensus       415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~n  491 (565)
T KOG0472|consen  415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPEC-LYELQTLETLLASNN  491 (565)
T ss_pred             HHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHH-HhhHHHHHHHHhccc
Confidence            4 455555554 778889999999999999998885555666688899999999988 367776 666777888888889


Q ss_pred             ccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739          540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       540 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      ++....+..+.++.+|..||+.+|.+. .+|..++++++|++|+++||++.
T Consensus       492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999777777999999999999999999 89999999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=7.8e-34  Score=261.63  Aligned_cols=477  Identities=22%  Similarity=0.294  Sum_probs=362.1

Q ss_pred             CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739           31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL  110 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  110 (628)
                      ..++.+.+++|.+... ...+.+ +..|..|++++++.+...+  +++++..++.++.+.+.+   ..+|+.++. ...+
T Consensus        45 v~l~~lils~N~l~~l-~~dl~n-L~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~l---s~lp~~i~s-~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL-REDLKN-LACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKL---SELPEQIGS-LISL  116 (565)
T ss_pred             cchhhhhhccCchhhc-cHhhhc-ccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchH---hhccHHHhh-hhhh
Confidence            5678888988887633 445667 8889999999998875544  588899999999988733   467788888 8899


Q ss_pred             cEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEE
Q 039739          111 KYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL  190 (628)
Q Consensus       111 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L  190 (628)
                      +.++++.+.+..    ++ ..++.+..|+.++..+|++. ..|..+.++.+|..+++.+|++. .+|+. ...++.|+++
T Consensus       117 ~~l~~s~n~~~e----l~-~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~-~i~m~~L~~l  188 (565)
T KOG0472|consen  117 VKLDCSSNELKE----LP-DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPEN-HIAMKRLKHL  188 (565)
T ss_pred             hhhhccccceee----cC-chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHH-HHHHHHHHhc
Confidence            999998888755    66 48888999999999999988 67888999999999999999988 77773 4448899999


Q ss_pred             EcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEcc
Q 039739          191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLS  270 (628)
Q Consensus       191 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  270 (628)
                      +...|.+. .++ ..++.+.+|+.|++..|.+.                             .+| .|..|..|+++.++
T Consensus       189 d~~~N~L~-tlP-~~lg~l~~L~~LyL~~Nki~-----------------------------~lP-ef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  189 DCNSNLLE-TLP-PELGGLESLELLYLRRNKIR-----------------------------FLP-EFPGCSLLKELHVG  236 (565)
T ss_pred             ccchhhhh-cCC-hhhcchhhhHHHHhhhcccc-----------------------------cCC-CCCccHHHHHHHhc
Confidence            99888765 233 46788888888888887653                             133 57788899999999


Q ss_pred             CCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCC
Q 039739          271 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDG  350 (628)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~  350 (628)
                      .|.+. .+|.....+++++..|++.+++++. .|..+.-+.+|++|++++|.++ .+|...+. + .|+.|.+.+|++..
T Consensus       237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRT  311 (565)
T ss_pred             ccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHH
Confidence            99887 7888888899999999999999875 5666777889999999999998 78888876 5 89999999998752


Q ss_pred             cccccccCCCC---ccEE-------ECcCCc---c-cCccchhhh---cCCccccEEEccCCccCCccccccc--CCCCC
Q 039739          351 SIPSSFGNMKF---LQIL-------DLSNNH---L-TGEIPEHLV---VGCVNLESLALSNNSLEGHMFSRNF--NLTNL  411 (628)
Q Consensus       351 ~~~~~~~~~~~---L~~L-------~l~~~~---~-~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L  411 (628)
                      .-. .+-++..   |++|       .++...   - ....+...+   ...-+.+.|+++.-+++......|.  .-.-.
T Consensus       312 iRr-~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V  390 (565)
T KOG0472|consen  312 IRR-EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV  390 (565)
T ss_pred             HHH-HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence            111 1111110   1111       111110   0 001111111   1234577788887777654433332  22347


Q ss_pred             cEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCC
Q 039739          412 RWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN  491 (628)
Q Consensus       412 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  491 (628)
                      ...++++|++. ++|..+..++.+.+..+.++...+.++..+..+++|+.|++++|.+. ..|..+..+..|+.|+++.|
T Consensus       391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence            78899999987 77887877777655544445555588888999999999999999887 56777888889999999999


Q ss_pred             cCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          492 NISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       492 ~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      .|. ..|.+.+ +..++.+..++|++ +.+++..+.++.+|..||+.+|.+. .+|..++++++|++|+++||++.
T Consensus       469 rFr-~lP~~~y~lq~lEtllas~nqi-~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  469 RFR-MLPECLYELQTLETLLASNNQI-GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccc-cchHHHhhHHHHHHHHhccccc-cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            988 6676665 66777777777888 5666666899999999999999998 67888999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-31  Score=271.82  Aligned_cols=462  Identities=22%  Similarity=0.255  Sum_probs=233.2

Q ss_pred             EeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecc
Q 039739           10 LYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDME   89 (628)
Q Consensus        10 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   89 (628)
                      +|.+.+++.-   +|.-+.....++.|+++.|.+-..=...+.. +-+|+.|+++++.+... |. .+..+.+|+.|+++
T Consensus         3 vd~s~~~l~~---ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~s   76 (1081)
T KOG0618|consen    3 VDASDEQLEL---IPEQILNNEALQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNLS   76 (1081)
T ss_pred             cccccccCcc---cchhhccHHHHHhhhccccccccCchHHhhh-eeeeEEeeccccccccC-Cc-hhhhHHHHhhcccc
Confidence            3444444433   4555555555777777776543221333333 55577777777766543 22 46666777777777


Q ss_pred             cchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccc
Q 039739           90 GALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS  169 (628)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~  169 (628)
                      .+.+   ...+...++ +.+|+++.|.++....    .| ..+..+++|++|++++|.+. ..|..+..+..+..++.++
T Consensus        77 ~n~i---~~vp~s~~~-~~~l~~lnL~~n~l~~----lP-~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~  146 (1081)
T KOG0618|consen   77 RNYI---RSVPSSCSN-MRNLQYLNLKNNRLQS----LP-ASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASN  146 (1081)
T ss_pred             hhhH---hhCchhhhh-hhcchhheeccchhhc----Cc-hhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhc
Confidence            7633   223345555 6777777777666644    44 46777777777777777766 5566666666666666666


Q ss_pred             cccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCC
Q 039739          170 NQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG  249 (628)
Q Consensus       170 ~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  249 (628)
                      |.....++.     . .++.+++..+.+.+.+.. ....+..  .+++.+|.+....      ......++.+.. ..+.
T Consensus       147 N~~~~~lg~-----~-~ik~~~l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~~~d------ls~~~~l~~l~c-~rn~  210 (1081)
T KOG0618|consen  147 NEKIQRLGQ-----T-SIKKLDLRLNVLGGSFLI-DIYNLTH--QLDLRYNEMEVLD------LSNLANLEVLHC-ERNQ  210 (1081)
T ss_pred             chhhhhhcc-----c-cchhhhhhhhhcccchhc-chhhhhe--eeecccchhhhhh------hhhccchhhhhh-hhcc
Confidence            622112222     1 144555554444332221 1122222  3444444332000      000001111111 0000


Q ss_pred             CCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccch
Q 039739          250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPV  329 (628)
Q Consensus       250 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  329 (628)
                      ..    ..-..-++|+.|..+.|.+....+.   ..-.+|+.++++.+.+.... ..+..+.+|+.++...|.++ .+|.
T Consensus       211 ls----~l~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~  281 (1081)
T KOG0618|consen  211 LS----ELEISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPL  281 (1081)
T ss_pred             cc----eEEecCcchheeeeccCcceeeccc---cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHH
Confidence            00    0001223444555544444311110   12234455555554444322 44445555666666666554 5555


Q ss_pred             hhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcc-ccEEEccCCccCCcccccccCC
Q 039739          330 EIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN-LESLALSNNSLEGHMFSRNFNL  408 (628)
Q Consensus       330 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~  408 (628)
                      .+.. ..+|+.|.+..|.+. .+|....+.++|++|++..|++. .+|...+..... |+.|..+.+.+....-..-..+
T Consensus       282 ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~  358 (1081)
T KOG0618|consen  282 RISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH  358 (1081)
T ss_pred             HHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence            5544 456666666666655 44555555666666666666665 555444333332 5555555555443221111234


Q ss_pred             CCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEc
Q 039739          409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI  488 (628)
Q Consensus       409 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  488 (628)
                      +.|+.|++.+|.+++.....+...++|+.|++++|.+.......+.+++.|++|+++||+++ .+|..+..++.|++|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            55666666666666555555566666666666666655444445566666666666666665 44455666666666666


Q ss_pred             cCCcCcCCCCCCCCCCcccEEecCCCcCc
Q 039739          489 SDNNISGSLPSCFHPLSVEQVHLSKNMLH  517 (628)
Q Consensus       489 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  517 (628)
                      .+|++. ..|+....++|+.++++.|+++
T Consensus       438 hsN~l~-~fPe~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  438 HSNQLL-SFPELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             cCCcee-echhhhhcCcceEEecccchhh
Confidence            666655 4444444444444444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=7.6e-31  Score=254.85  Aligned_cols=391  Identities=25%  Similarity=0.351  Sum_probs=231.5

Q ss_pred             CCccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739          108 PSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS  186 (628)
Q Consensus       108 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~  186 (628)
                      +-.+-.++++|.+ +.    -.+.+...+++++-|.|..+.+. .+|..++.+.+|++|.+.+|++. .+-. .+..++.
T Consensus         7 pFVrGvDfsgNDFsg~----~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~   79 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGD----RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPR   79 (1255)
T ss_pred             ceeecccccCCcCCCC----cCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchh
Confidence            3344445555444 22    22234555555555555555554 44555555555555555555554 3322 3455555


Q ss_pred             ccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccE
Q 039739          187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEY  266 (628)
Q Consensus       187 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  266 (628)
                      |+.+.+..|.+..                                                    +.+|..+.++..|+.
T Consensus        80 LRsv~~R~N~LKn----------------------------------------------------sGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKN----------------------------------------------------SGIPTDIFRLKDLTI  107 (1255)
T ss_pred             hHHHhhhcccccc----------------------------------------------------CCCCchhccccccee
Confidence            5555555554432                                                    124555666677777


Q ss_pred             EEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccc
Q 039739          267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN  346 (628)
Q Consensus       267 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~  346 (628)
                      |++++|.+. .+|..+ .+-+++-.|++                        ++|+|. .+|..++..+..|-.|+|++|
T Consensus       108 lDLShNqL~-EvP~~L-E~AKn~iVLNL------------------------S~N~Ie-tIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen  108 LDLSHNQLR-EVPTNL-EYAKNSIVLNL------------------------SYNNIE-TIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             eecchhhhh-hcchhh-hhhcCcEEEEc------------------------ccCccc-cCCchHHHhhHhHhhhccccc
Confidence            777777665 555443 33344444444                        444443 444444444444555555555


Q ss_pred             cCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccC-CcccccccCCCCCcEEEccCccCcCcc
Q 039739          347 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLE-GHMFSRNFNLTNLRWLQLEGNHFVGEI  425 (628)
Q Consensus       347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~~  425 (628)
                      .+. .+|..+..+..|++|++++|.+. .+.......+.+|+.|.+++.+.+ ...+..+..+.+|..++++.|++. ..
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            554 44444455555555555555433 221111112333444444443322 123334445555666666655555 45


Q ss_pred             cccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCc
Q 039739          426 PQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS  505 (628)
Q Consensus       426 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  505 (628)
                      |+.+..+++|+.|++++|.++ .+........+|++|+++.|+++ ..|.+++.+++|+.|-..+|+++.          
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F----------  305 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF----------  305 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc----------
Confidence            555566666666666666555 33334444556666666666665 556666666666666666665542          


Q ss_pred             ccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECC
Q 039739          506 VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS  585 (628)
Q Consensus       506 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  585 (628)
                                  .-+|.+ ++.+.+|+.+...+|.+. .+|+++..|..|+.|.|++|++. .+|+++.-++-|+.||+.
T Consensus       306 ------------eGiPSG-IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  306 ------------EGIPSG-IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             ------------cCCccc-hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence                        246666 888999999999999887 89999999999999999999888 799999999999999999


Q ss_pred             CCccccccccccccccccccccC-Ccccccc
Q 039739          586 NNSLHGSIPLCLDNTTLHESYNN-SSSLDKQ  615 (628)
Q Consensus       586 ~~~~~~~ip~~~~~~~~~~~~~~-~~~~~~~  615 (628)
                      .|+.. .+|+-+.-.....+|.+ +.+++.|
T Consensus       371 eNpnL-VMPPKP~da~~~lefYNIDFSLq~Q  400 (1255)
T KOG0444|consen  371 ENPNL-VMPPKPNDARKKLEFYNIDFSLQHQ  400 (1255)
T ss_pred             CCcCc-cCCCCcchhhhcceeeecceehhhH
Confidence            99999 89988877665566655 5677654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-30  Score=264.25  Aligned_cols=504  Identities=23%  Similarity=0.212  Sum_probs=322.4

Q ss_pred             EecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEee
Q 039739           36 LTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSL  115 (628)
Q Consensus        36 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  115 (628)
                      ++++++... .++..+.. -..+..|++..|.+.... -+.+.+.-+|+.|+++++.   .+..+..+.. +++|+.|++
T Consensus         3 vd~s~~~l~-~ip~~i~~-~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~---~~~fp~~it~-l~~L~~ln~   75 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILN-NEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQ---ISSFPIQITL-LSHLRQLNL   75 (1081)
T ss_pred             cccccccCc-ccchhhcc-HHHHHhhhccccccccCc-hHHhhheeeeEEeeccccc---cccCCchhhh-HHHHhhccc
Confidence            566666654 44555554 344888999888665432 3356667779999999974   3567777887 999999999


Q ss_pred             ccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccC
Q 039739          116 FGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN  195 (628)
Q Consensus       116 ~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  195 (628)
                      +.|.+..    .+ ....++.+|++++|..|.+. .+|..+..+.+|++|+++.|.+. .+|. .+..++.+..+..++|
T Consensus        76 s~n~i~~----vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen   76 SRNYIRS----VP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNN  147 (1081)
T ss_pred             chhhHhh----Cc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcc
Confidence            9999866    66 58899999999999999887 88999999999999999999997 8888 7899999999999998


Q ss_pred             eeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee-eeccCCCCCCcccccccccCCCccEEEccCCcc
Q 039739          196 HFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR-LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKM  274 (628)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  274 (628)
                      ....     .++... ++.+++..+.+.+.+.....      .+++ +++ ..+...   -..+..+++|+.+....+.+
T Consensus       148 ~~~~-----~lg~~~-ik~~~l~~n~l~~~~~~~i~------~l~~~ldL-r~N~~~---~~dls~~~~l~~l~c~rn~l  211 (1081)
T KOG0618|consen  148 EKIQ-----RLGQTS-IKKLDLRLNVLGGSFLIDIY------NLTHQLDL-RYNEME---VLDLSNLANLEVLHCERNQL  211 (1081)
T ss_pred             hhhh-----hhcccc-chhhhhhhhhcccchhcchh------hhheeeec-ccchhh---hhhhhhccchhhhhhhhccc
Confidence            3221     112222 66677766655544332221      2222 444 222222   12334555555555555544


Q ss_pred             cCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccc
Q 039739          275 NGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPS  354 (628)
Q Consensus       275 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  354 (628)
                      ....     ...++++.|....|.++...  ......+|++++++.+.+. .+|.|+.. +++|+.+...+|.+. .+|.
T Consensus       212 s~l~-----~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~  281 (1081)
T KOG0618|consen  212 SELE-----ISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPL  281 (1081)
T ss_pred             ceEE-----ecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHH
Confidence            3111     13355666666666555211  1223445667777776666 56666655 667777777666664 5555


Q ss_pred             cccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCC-CcEEEccCccCcCcccc-cccCC
Q 039739          355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTN-LRWLQLEGNHFVGEIPQ-SLSKC  432 (628)
Q Consensus       355 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~-~~~~~  432 (628)
                      .+....+|+.+....|.+. -++... ++...|++|++..|++.......+.-... |+.|..+.+++.. .|. .-...
T Consensus       282 ri~~~~~L~~l~~~~nel~-yip~~l-e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~  358 (1081)
T KOG0618|consen  282 RISRITSLVSLSAAYNELE-YIPPFL-EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNH  358 (1081)
T ss_pred             HHhhhhhHHHHHhhhhhhh-hCCCcc-cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhh
Confidence            5666666676666666654 444322 23566777777766665433333322222 5555555555442 221 11224


Q ss_pred             CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739          433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS  512 (628)
Q Consensus       433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  512 (628)
                      +.|+.|++-+|.+++.....+.+..+|+.|+|+.|++.......+.++..|++|+++||+++...........|++|...
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence            56777777777777766667777788888888888777555555777788888888888777433333347777777777


Q ss_pred             CCcCcCCCCccccccCCCccEEECCCcccCCc-cchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCC
Q 039739          513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN-ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  587 (628)
Q Consensus       513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~  587 (628)
                      +|.+. ..| . +..+++|+.+|++.|+++.. +++... .++|++||++||.........|..+.++...++.-+
T Consensus       439 sN~l~-~fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  439 SNQLL-SFP-E-LAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCcee-ech-h-hhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            77774 445 3 66777888888888876532 333322 267888888888655456666666666655555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=1.6e-28  Score=238.72  Aligned_cols=371  Identities=24%  Similarity=0.337  Sum_probs=303.2

Q ss_pred             CCCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccC
Q 039739            2 GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFK   81 (628)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~   81 (628)
                      +-++..+-.|+++|.+++. ..|.....++.+++|.|....+. ..|.+++. +.+|++|.+.+|++.....  .++.++
T Consensus         4 gVLpFVrGvDfsgNDFsg~-~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~vhG--ELs~Lp   78 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGD-RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLISVHG--ELSDLP   78 (1255)
T ss_pred             cccceeecccccCCcCCCC-cCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHhhhh--hhccch
Confidence            4577888999999999863 67888888999999999998865 66999999 9999999999998875544  588999


Q ss_pred             ccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCC
Q 039739           82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTS  161 (628)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~  161 (628)
                      .||.+.++.|.+. ...+|..+.+ +..|.+|++++|.+..    .| ..+...+++-+|+||+|+|...-...|.++..
T Consensus        79 ~LRsv~~R~N~LK-nsGiP~diF~-l~dLt~lDLShNqL~E----vP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLK-NSGIPTDIFR-LKDLTILDLSHNQLRE----VP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTD  151 (1255)
T ss_pred             hhHHHhhhccccc-cCCCCchhcc-cccceeeecchhhhhh----cc-hhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence            9999999998543 3457788888 9999999999999977    66 48889999999999999999554455778999


Q ss_pred             CCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee
Q 039739          162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR  241 (628)
Q Consensus       162 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  241 (628)
                      |-.||+++|++. .+|+ .+..+..|+.|.+++|++. ......+-.+.+|++|.+++                      
T Consensus       152 LLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~----------------------  206 (1255)
T KOG0444|consen  152 LLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSN----------------------  206 (1255)
T ss_pred             Hhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccc----------------------
Confidence            999999999997 8888 7999999999999999875 22222333444555555544                      


Q ss_pred             eeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCC
Q 039739          242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNN  321 (628)
Q Consensus       242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  321 (628)
                           .......+|..+..+.+|..++++.|.+. .+|+-+ -.+++|+.|+++++.++.. ........+|++|+++.|
T Consensus       207 -----TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl-y~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  207 -----TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL-YKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN  278 (1255)
T ss_pred             -----ccchhhcCCCchhhhhhhhhccccccCCC-cchHHH-hhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc
Confidence                 33344567888889999999999999887 677766 4789999999999988753 334556678999999999


Q ss_pred             cCCcccchhhhhhCCCccEEEcccccCC-CcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc
Q 039739          322 NFRGHIPVEIGDVLPSLFSLNISMNALD-GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH  400 (628)
Q Consensus       322 ~i~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  400 (628)
                      +++ .+|+.+++ ++.|+.|.+.+|.++ .-+|++++.+.+|+++...+|.+. -+|..+.. |++|+.|.++.|++. .
T Consensus       279 QLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR-C~kL~kL~L~~NrLi-T  353 (1255)
T KOG0444|consen  279 QLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR-CVKLQKLKLDHNRLI-T  353 (1255)
T ss_pred             hhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh-hHHHHHhccccccee-e
Confidence            998 89999998 899999999998866 357889999999999999988875 77777664 999999999998875 3


Q ss_pred             ccccccCCCCCcEEEccCccCc
Q 039739          401 MFSRNFNLTNLRWLQLEGNHFV  422 (628)
Q Consensus       401 ~~~~~~~~~~L~~L~l~~~~~~  422 (628)
                      .+..+.-++.|+.|++..|+-.
T Consensus       354 LPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  354 LPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             chhhhhhcCCcceeeccCCcCc
Confidence            5677778899999999988754

>PLN03210 Resistant to P

Probab=99.89  E-value=1.6e-21  Score=222.09  Aligned_cols=320  Identities=21%  Similarity=0.237  Sum_probs=230.7

Q ss_pred             cccccccC-CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhh
Q 039739          254 FPKFLYHQ-HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIG  332 (628)
Q Consensus       254 ~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  332 (628)
                      +|..+..+ ++|+.|.+.++.+. .+|..+  ...+|+.|++.++.+.. .+..+..+++|+.++++++...+.+|. +.
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls  654 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LS  654 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence            34444443 45788888777664 556654  56778888888877654 334456778888888887754446664 33


Q ss_pred             hhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCc
Q 039739          333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLR  412 (628)
Q Consensus       333 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  412 (628)
                       .+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|...  .+++|+.|++++|......+.   ...+|+
T Consensus       655 -~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~  728 (1153)
T PLN03210        655 -MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNIS  728 (1153)
T ss_pred             -cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcC
Confidence             36788888888887666778888888888888888876555666543  478888888888864433322   245788


Q ss_pred             EEEccCccCcCcccccccCCCcccEEEccCCcCCC-------ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCE
Q 039739          413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG-------KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI  485 (628)
Q Consensus       413 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  485 (628)
                      +|+++++.+. .+|..+ .+++|++|.+.++....       ..+......++|+.|++++|......|..+.++++|+.
T Consensus       729 ~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~  806 (1153)
T PLN03210        729 WLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH  806 (1153)
T ss_pred             eeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence            8888888776 455443 56778888777643211       11112233578899999998777778888889999999


Q ss_pred             EEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcC
Q 039739          486 LDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL  565 (628)
Q Consensus       486 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  565 (628)
                      |++++|...+..|....+++|+.|++++|.....++..    .++|+.|++++|.++ .+|.++..+++|+.|++++|+-
T Consensus       807 L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        807 LEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             EECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence            99998865556776667888999999988765555442    368999999999988 6788899999999999999855


Q ss_pred             CccCCccccCCCCCcEEECCCCcccc
Q 039739          566 EGEVPVQLCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       566 ~~~~~~~l~~l~~L~~L~l~~~~~~~  591 (628)
                      ...+|..+..+++|+.+++++|+...
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCcccc
Confidence            55788888889999999999997553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=2.4e-20  Score=212.42  Aligned_cols=341  Identities=19%  Similarity=0.165  Sum_probs=155.3

Q ss_pred             ccccccCCCCCcEEEccCCc------ccccCchhhhcC-CCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeee
Q 039739          128 LDRGLCSLVHLQVLNIAYND------LRGSLPWCLANM-TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIP  200 (628)
Q Consensus       128 ~~~~l~~l~~L~~L~L~~~~------~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~  200 (628)
                      ...+|.++.+|+.|.++.+.      +...+|..+..+ .+|+.|.+.++.+. .+|. .+ ...+|++|++.++.+.. 
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~-  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK-  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-
Confidence            33456666666666665432      122344444443 24666666666554 5554 23 34556666666555431 


Q ss_pred             cCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCch
Q 039739          201 ISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPT  280 (628)
Q Consensus       201 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  280 (628)
                       ....+..+++|+.++++++...                            ..+| .+..+++|+.|++.+|.....+|.
T Consensus       626 -L~~~~~~l~~Lk~L~Ls~~~~l----------------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        626 -LWDGVHSLTGLRNIDLRGSKNL----------------------------KEIP-DLSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             -cccccccCCCCCEEECCCCCCc----------------------------CcCC-ccccCCcccEEEecCCCCccccch
Confidence             1122334444555544433210                            1111 133445555555555544444444


Q ss_pred             hHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCC
Q 039739          281 WLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK  360 (628)
Q Consensus       281 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  360 (628)
                      .+ ..+++|+.|++++|....                        .+|..+  .+++|+.|++++|......|..   .+
T Consensus       676 si-~~L~~L~~L~L~~c~~L~------------------------~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~  725 (1153)
T PLN03210        676 SI-QYLNKLEDLDMSRCENLE------------------------ILPTGI--NLKSLYRLNLSGCSRLKSFPDI---ST  725 (1153)
T ss_pred             hh-hccCCCCEEeCCCCCCcC------------------------ccCCcC--CCCCCCEEeCCCCCCccccccc---cC
Confidence            43 445555555555443222                        333222  1344444444444332222221   23


Q ss_pred             CccEEECcCCcccCccchhhhcCCccccEEEccCCccCC-------cccccccCCCCCcEEEccCccCcCcccccccCCC
Q 039739          361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG-------HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF  433 (628)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  433 (628)
                      +|+.|+++++.+. .+|...  .+++|++|.+.++....       ........+++|+.|++++|.....+|..+.+++
T Consensus       726 nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~  802 (1153)
T PLN03210        726 NISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH  802 (1153)
T ss_pred             CcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence            4444444444443 333321  23444444444322100       0000111234566666666555445555555566


Q ss_pred             cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCC
Q 039739          434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSK  513 (628)
Q Consensus       434 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  513 (628)
                      +|+.|++++|.....+|..+ ++++|+.|++++|......|..   .++|+.|++++|.+.........+++|+.|++++
T Consensus       803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence            66666666554433444433 4555666666655433233221   2455555665555542221222245555555555


Q ss_pred             CcCcCCCCccccccCCCccEEECCCcc
Q 039739          514 NMLHGQLKRGTFFNSYSLVTLDLSYNR  540 (628)
Q Consensus       514 n~~~~~~~~~~~~~~~~L~~L~l~~~~  540 (628)
                      |+-...++.. ...+++|+.+++++|.
T Consensus       879 C~~L~~l~~~-~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        879 CNNLQRVSLN-ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCcCccCcc-cccccCCCeeecCCCc
Confidence            4433344443 4556666777776664

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=3.9e-22  Score=184.48  Aligned_cols=410  Identities=21%  Similarity=0.209  Sum_probs=221.4

Q ss_pred             CccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccc-cccccccCCCCCCCCCcc
Q 039739          109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS-NQLTGSISSSPLVHLTSI  187 (628)
Q Consensus       109 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~l~~~~l~~l~~L  187 (628)
                      .-..++|..|.+..    +|+++|+.+++||.|+|++|.|+...|++|..+++|.+|-+.+ |+|+ .++...|+.+.++
T Consensus        68 ~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            56678888888888    9999999999999999999999999999999999999887777 8888 8998899999999


Q ss_pred             cEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEE
Q 039739          188 EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYV  267 (628)
Q Consensus       188 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  267 (628)
                      +-|.+..|++.. +..+.|..++++..|.+..|.+...                            -...+.....++.+
T Consensus       143 qrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i----------------------------~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  143 QRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSI----------------------------CKGTFQGLAAIKTL  193 (498)
T ss_pred             HHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhh----------------------------ccccccchhccchH
Confidence            999998887763 3335566777777777666543211                            11134445566666


Q ss_pred             EccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccch-hhhhhCCCccEEEcccc
Q 039739          268 DLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPV-EIGDVLPSLFSLNISMN  346 (628)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~L~~~  346 (628)
                      .+..+.+....      +++.+.....       ..+..+++........+.+.++. .+.. .+......+.+=..+.|
T Consensus       194 hlA~np~icdC------nL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d  259 (498)
T KOG4237|consen  194 HLAQNPFICDC------NLPWLADDLA-------MNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSED  259 (498)
T ss_pred             hhhcCcccccc------ccchhhhHHh-------hchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhcccc
Confidence            66666543211      1111111000       00111112211222222222222 1111 11110001111111122


Q ss_pred             cCCCcccc-cccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcc
Q 039739          347 ALDGSIPS-SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEI  425 (628)
Q Consensus       347 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~  425 (628)
                      .....-|. .|..+++|++|++++|+++ .+....|.+...+++|.+..|++......+|.++..|++|++++|+++...
T Consensus       260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  260 FPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             CcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence            22222222 3556666666666666665 555555666666666666666665444455556666666666666666666


Q ss_pred             cccccCCCcccEEEccCCcCCC-----ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC---C
Q 039739          426 PQSLSKCFVLEGLFLNNNSLSG-----KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS---L  497 (628)
Q Consensus       426 ~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~  497 (628)
                      |.+|....+|.+|++-.|++.=     .+.+++           .+.+..+..+  =.....++.+.+++..+.+.   .
T Consensus       339 ~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl-----------r~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~  405 (498)
T KOG4237|consen  339 PGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL-----------RKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGG  405 (498)
T ss_pred             cccccccceeeeeehccCcccCccchHHHHHHH-----------hhCCCCCCCC--CCCCchhccccchhccccccccCC
Confidence            6666666666666665554320     011111           1111110000  01112233333333322211   1


Q ss_pred             CCC----------CCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc
Q 039739          498 PSC----------FHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG  567 (628)
Q Consensus       498 ~~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~  567 (628)
                      |+.          ...+.+.++.=..|+....+|+++   ......|.+.+|.++ .+|..  .+.+| .+++++|+|..
T Consensus       406 ~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i---P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~  478 (498)
T KOG4237|consen  406 PEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI---PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS  478 (498)
T ss_pred             ccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC---CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence            110          002223332222233334455442   235667777777777 34444  44566 77888887774


Q ss_pred             cCCccccCCCCCcEEECCCC
Q 039739          568 EVPVQLCKLNQLQLLDLSNN  587 (628)
Q Consensus       568 ~~~~~l~~l~~L~~L~l~~~  587 (628)
                      -.-..|.++..|.+|-|++|
T Consensus       479 Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  479 LSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhcccccchhhhheeEEecC
Confidence            44556777777777777664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.7e-18  Score=181.24  Aligned_cols=254  Identities=27%  Similarity=0.304  Sum_probs=155.6

Q ss_pred             ccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEE
Q 039739          312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLA  391 (628)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (628)
                      .|+.|.+.+|.++ .+|.    .+++|+.|++++|.++ .+|..   .++|+.|++++|.+. .++.    .+.+|+.|+
T Consensus       223 ~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~  288 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPA----LPSGLCKLW  288 (788)
T ss_pred             CCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhh----chhhcCEEE
Confidence            4555555555554 3442    1355666666666555 23321   345666666666554 4443    134566666


Q ss_pred             ccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCC
Q 039739          392 LSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG  471 (628)
Q Consensus       392 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  471 (628)
                      +++|.++... .   ..++|+.|++++|.+.+ +|..   ..+|+.|++++|.+. .+|..   ..+|+.|++++|.+..
T Consensus       289 Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        289 IFGNQLTSLP-V---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS  356 (788)
T ss_pred             CcCCcccccc-c---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCccCC
Confidence            6666655321 1   23566666666666653 3321   234666666666665 23321   1467777777777663


Q ss_pred             CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739          472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG  551 (628)
Q Consensus       472 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  551 (628)
                       +|..   .++|+.|++++|++.. +|..  +..|+.|++++|++. .+|..    .++|+.|++++|.+++ +|..   
T Consensus       357 -LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l---  420 (788)
T PRK15387        357 -LPTL---PSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML---  420 (788)
T ss_pred             -CCCC---Ccccceehhhcccccc-Cccc--ccccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc---
Confidence             3321   3466677777777763 4432  356777888887775 34432    3578888898888874 4543   


Q ss_pred             CCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccccccccccccccC
Q 039739          552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNN  608 (628)
Q Consensus       552 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~~~~~  608 (628)
                      ..+|+.|++++|+++ .+|+.+.++++|+.|++++|++++.+|+.+..++..+.|..
T Consensus       421 ~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s~~~~~g  476 (788)
T PRK15387        421 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSG  476 (788)
T ss_pred             hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhcCccccC
Confidence            246778889999888 78888888899999999999999888888876665555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.77  E-value=1.2e-20  Score=174.78  Aligned_cols=291  Identities=19%  Similarity=0.216  Sum_probs=198.2

Q ss_pred             CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeecc-ccCCCCCCcccccccc
Q 039739           55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFG-SILGTNSSRILDRGLC  133 (628)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~  133 (628)
                      .+.-..+.|..|.++ .+|.++|+.+++||.|+|+.|  .++...++++.. ++.+..|-+.+ +++++    ++...|.
T Consensus        66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N--~Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~----l~k~~F~  137 (498)
T KOG4237|consen   66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKN--NISFIAPDAFKG-LASLLSLVLYGNNKITD----LPKGAFG  137 (498)
T ss_pred             CCcceEEEeccCCcc-cCChhhccchhhhceeccccc--chhhcChHhhhh-hHhhhHHHhhcCCchhh----hhhhHhh
Confidence            356778899888888 466669999999999999999  566667777777 88888888777 77788    8888999


Q ss_pred             CCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCccc
Q 039739          134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLK  213 (628)
Q Consensus       134 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  213 (628)
                      ++..|+.|.+..|.+.-...+.|..+++|..|.+..|.+. .++...+..+.+++.+.+..|++.....      ++.+.
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn------L~wla  210 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN------LPWLA  210 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc------cchhh
Confidence            9999999999999998888889999999999999999987 7777788999999999988887543221      11111


Q ss_pred             EEeccCCcccccccccccCccCcccceeeeccCCCCCCccccc-ccccCCCccEEEccCCcccCcCchhHHhcCccCcEE
Q 039739          214 SFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPK-FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQL  292 (628)
Q Consensus       214 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  292 (628)
                      .... .+.+.-.+...   . .+..+.+-.+      ...-+. +......+.+=--+.+......|..-++.+++|++|
T Consensus       211 ~~~a-~~~ietsgarc---~-~p~rl~~~Ri------~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l  279 (498)
T KOG4237|consen  211 DDLA-MNPIETSGARC---V-SPYRLYYKRI------NQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL  279 (498)
T ss_pred             hHHh-hchhhccccee---c-chHHHHHHHh------cccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence            1110 00100000000   0 0001111111      000000 000111111111223334456677767888888888


Q ss_pred             EeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcc
Q 039739          293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHL  372 (628)
Q Consensus       293 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  372 (628)
                      ++++|.++..-..+|.....+++|.+.+|.+. .+...++..+..|+.|+|.+|+++...|.+|....+|.+|.+-.|.+
T Consensus       280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            88888888777777888888888888888775 55566666677888888888888877777788888888887766654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=2.9e-17  Score=173.58  Aligned_cols=268  Identities=23%  Similarity=0.291  Sum_probs=201.7

Q ss_pred             CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739          262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL  341 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  341 (628)
                      ..-..|+++.+.+. .+|..+.   ++|+.|.+.+|.++... .   ..++|++|++++|.++ .+|.    ..++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccC-cccC----ccccccee
Confidence            34567888888777 6776653   47888899888877532 1   3578999999999887 5664    24689999


Q ss_pred             EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739          342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF  421 (628)
Q Consensus       342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  421 (628)
                      ++.+|.+. .+|..   .++|+.|++++|++. .+|.    .+++|+.|++++|.+.... .   ...+|+.|++++|.+
T Consensus       268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQL  334 (788)
T ss_pred             eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccCC-C---CcccccccccccCcc
Confidence            99998877 44432   357889999999887 6664    2578999999999887532 2   234688899999988


Q ss_pred             cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739          422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  501 (628)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  501 (628)
                      . .+|..   ..+|++|++++|.+.. +|..   ..+|+.|++++|.+.. +|..   .++|+.|++++|++.. .|.. 
T Consensus       335 ~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l-  400 (788)
T PRK15387        335 T-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL-  400 (788)
T ss_pred             c-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-
Confidence            7 34531   2579999999998873 4432   3578889999999884 4432   3579999999999884 4433 


Q ss_pred             CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCC
Q 039739          502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL  576 (628)
Q Consensus       502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l  576 (628)
                       +.+|+.|++++|.+. .+|..    ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+.++
T Consensus       401 -~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        401 -PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             -ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence             468999999999986 46543    357899999999998 678889999999999999999998877766443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=2e-16  Score=168.38  Aligned_cols=223  Identities=28%  Similarity=0.396  Sum_probs=110.6

Q ss_pred             cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739          288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL  367 (628)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  367 (628)
                      +...|.+++..++. .+..+  .+.++.|++++|.++ .+|..+.   ++|+.|++++|.++ .+|..+  .++|+.|++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence            45566666665553 22222  245667777777666 5555442   46777777766665 344433  235666777


Q ss_pred             cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCC
Q 039739          368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG  447 (628)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  447 (628)
                      ++|.+. .+|..+   ..+|+.|++++|.+.. .+..+  .++|+.|++++|.++ .+|..+.  ++|+.|++++|.+..
T Consensus       249 s~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        249 SINRIT-ELPERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             cCCccC-cCChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc
Confidence            766665 555443   2456666666666553 22222  235666666666555 2333221  345555566555542


Q ss_pred             ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739          448 KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN  527 (628)
Q Consensus       448 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  527 (628)
                       +|..+  .++|+.|++++|.++. +|..+  .++|+.|++++|++. ..|..+ +++|+.|++++|.++ .+|.. +. 
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt-~LP~~-l~-  387 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALT-NLPEN-LP-  387 (754)
T ss_pred             -CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCC-CCCHh-HH-
Confidence             22222  1455555555555542 33333  245555555555554 222211 234445555554443 23322 11 


Q ss_pred             CCCccEEECCCcccC
Q 039739          528 SYSLVTLDLSYNRLN  542 (628)
Q Consensus       528 ~~~L~~L~l~~~~~~  542 (628)
                       .+|+.|++++|++.
T Consensus       388 -~sL~~LdLs~N~L~  401 (754)
T PRK15370        388 -AALQIMQASRNNLV  401 (754)
T ss_pred             -HHHHHHhhccCCcc
Confidence             23444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=8.6e-18  Score=166.87  Aligned_cols=60  Identities=28%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             CCccEEECCCcccCCc----cchhhcCCCCCcEEECCCCcCCcc----CCccccCC-CCCcEEECCCCc
Q 039739          529 YSLVTLDLSYNRLNGN----ISDWVDGLSQLSHLILGHNNLEGE----VPVQLCKL-NQLQLLDLSNNS  588 (628)
Q Consensus       529 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l-~~L~~L~l~~~~  588 (628)
                      +.|+.|++++|.++..    +...+..+++|+.+++++|.++..    ....+... +.|+++++.+++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            4566666666665421    223344455666666666666633    22233333 456666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=2.8e-17  Score=163.21  Aligned_cols=156  Identities=22%  Similarity=0.280  Sum_probs=80.0

Q ss_pred             CCCcEEEccCccCcCc----ccccccCCCcccEEEccCCcCCCc----cCccccCCCCcceEECCCCcCCCCC----ccc
Q 039739          409 TNLRWLQLEGNHFVGE----IPQSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQHIMMPKNHLEGPI----PVE  476 (628)
Q Consensus       409 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~  476 (628)
                      ++|+.|++++|.+++.    +...+..+..|++|++++|.+.+.    ++..+...++|++|++++|.+.+..    ...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4444444444444311    122333344455555555544321    1122333445555555555544222    122


Q ss_pred             ccCCCCCCEEEccCCcCcCCCCCCC------CCCcccEEecCCCcCcC----CCCccccccCCCccEEECCCcccCCc--
Q 039739          477 FCQLDWLQILDISDNNISGSLPSCF------HPLSVEQVHLSKNMLHG----QLKRGTFFNSYSLVTLDLSYNRLNGN--  544 (628)
Q Consensus       477 l~~l~~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~--  544 (628)
                      +..+++|++|++++|++.+.....+      ....|+.|++++|.++.    .+... +..+++|+.+++++|.++..  
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHH
Confidence            4455566666666665543111111      12566666666666541    11222 45568899999999998855  


Q ss_pred             --cchhhcCC-CCCcEEECCCCcC
Q 039739          545 --ISDWVDGL-SQLSHLILGHNNL  565 (628)
Q Consensus       545 --~~~~~~~l-~~L~~L~l~~~~i  565 (628)
                        ....+... +.|+.+++.++++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCCC
Confidence              33334444 6899999988764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.63  E-value=2.5e-15  Score=160.14  Aligned_cols=244  Identities=25%  Similarity=0.339  Sum_probs=98.0

Q ss_pred             CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739          314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS  393 (628)
Q Consensus       314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  393 (628)
                      ..|+++++.++ .+|..+   .+.++.|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+   .+.|+.|+++
T Consensus       181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls  249 (754)
T PRK15370        181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELS  249 (754)
T ss_pred             eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECc
Confidence            34444444443 334322   124445555544444 2332221  34455555544443 343322   2344445555


Q ss_pred             CCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCC
Q 039739          394 NNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI  473 (628)
Q Consensus       394 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  473 (628)
                      +|.+... +..+  ..+|+.|++++|.+. .+|..+.  ++|++|++++|.+. .+|..+.  ++|+.|++++|.+.. .
T Consensus       250 ~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence            4444321 1111  124445555544444 2333221  24455555554444 2222221  244444555544442 2


Q ss_pred             cccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCC
Q 039739          474 PVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS  553 (628)
Q Consensus       474 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  553 (628)
                      |..+  .++|+.|++++|.++. +|..+ +++|+.|++++|++. .+|.. +  .++|+.|++++|.++. +|..+.  .
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~-~LP~~-l--p~~L~~LdLs~N~Lt~-LP~~l~--~  388 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT-VLPET-L--PPTITTLDVSRNALTN-LPENLP--A  388 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhh-cCcccEEECCCCCCC-cCChh-h--cCCcCEEECCCCcCCC-CCHhHH--H
Confidence            2211  1344455555544442 22211 234455555555443 23322 1  1344555555554442 232222  1


Q ss_pred             CCcEEECCCCcCCccCCccccC----CCCCcEEECCCCccc
Q 039739          554 QLSHLILGHNNLEGEVPVQLCK----LNQLQLLDLSNNSLH  590 (628)
Q Consensus       554 ~L~~L~l~~~~i~~~~~~~l~~----l~~L~~L~l~~~~~~  590 (628)
                      .|+.|++++|+++ .+|+.+.+    ++++..|++.+|+++
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            3444445555444 33332222    244444555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.4e-17  Score=136.61  Aligned_cols=165  Identities=27%  Similarity=0.400  Sum_probs=112.9

Q ss_pred             ccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCC
Q 039739          405 NFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ  484 (628)
Q Consensus       405 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  484 (628)
                      +..+.....|.+++|+++ .+|..+..+.+|+.|++.+|.+. ..|..++.++.|++|++.-|++. ..|.+|..+|.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            345667788888888887 56667788889999999999887 77888899999999999988887 7889999999999


Q ss_pred             EEEccCCcCcC-CCCCC-CCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCC
Q 039739          485 ILDISDNNISG-SLPSC-FHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH  562 (628)
Q Consensus       485 ~L~l~~~~~~~-~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  562 (628)
                      +||+++|++.+ ..|.. |.+.+|+.|.+++|++ ..+|++ ++.+++|+.|.+..|++. ..|..++.++.|++|.+.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            99999988764 23332 2355555555555555 244444 555555555555555544 3445555555555555555


Q ss_pred             CcCCccCCccccCC
Q 039739          563 NNLEGEVPVQLCKL  576 (628)
Q Consensus       563 ~~i~~~~~~~l~~l  576 (628)
                      |+++ .+|..++++
T Consensus       183 nrl~-vlppel~~l  195 (264)
T KOG0617|consen  183 NRLT-VLPPELANL  195 (264)
T ss_pred             ceee-ecChhhhhh
Confidence            5555 455444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=9.6e-16  Score=125.88  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=67.6

Q ss_pred             CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739           31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL  110 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  110 (628)
                      .+++.|.+|+|.++ ..+..++. +.+|+.|++.+|.+.+...  .++.+++|+.|++.-+.+   ...|..++. ++-|
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie~lp~--~issl~klr~lnvgmnrl---~~lprgfgs-~p~l  104 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIEELPT--SISSLPKLRILNVGMNRL---NILPRGFGS-FPAL  104 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhhhcCh--hhhhchhhhheecchhhh---hcCccccCC-Cchh
Confidence            34444444444443 22333444 4444444444444432211  344444444444443311   223344444 4444


Q ss_pred             cEEeeccccC-CCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccE
Q 039739          111 KYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE  189 (628)
Q Consensus       111 ~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~  189 (628)
                      ++|++.++.+ ..    ..+..|-.+..|+.|++++|+++ .+|..++++++|+.|.+..|.+. ++|. .++.++.|++
T Consensus       105 evldltynnl~e~----~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lre  177 (264)
T KOG0617|consen  105 EVLDLTYNNLNEN----SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLRE  177 (264)
T ss_pred             hhhhccccccccc----cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHHH
Confidence            4444444444 11    22234444445555555555544 44555555555555555555444 4444 4555555555


Q ss_pred             EEcccCeee
Q 039739          190 LYLSNNHFQ  198 (628)
Q Consensus       190 L~l~~~~~~  198 (628)
                      |++.+|++.
T Consensus       178 lhiqgnrl~  186 (264)
T KOG0617|consen  178 LHIQGNRLT  186 (264)
T ss_pred             Hhcccceee
Confidence            555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=7.1e-13  Score=125.46  Aligned_cols=214  Identities=21%  Similarity=0.223  Sum_probs=153.5

Q ss_pred             CCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCc-chhHhhccCCCCceEecccccccccccCCCccccC
Q 039739            3 SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHIS-LLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFK   81 (628)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~   81 (628)
                      ++++|++..|.++.+.... ..+....|++++.|||+.|-+... ....++..+|+|+.|+++.|.+........-..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~-~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAG-IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccc-hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            6788999999998875521 115678899999999999987652 23456666999999999999877554443335688


Q ss_pred             ccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccC-chhhhcCC
Q 039739           82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSL-PWCLANMT  160 (628)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~  160 (628)
                      +|+.|.+++|++.  ......+...+|.|+.|.+.+|..--    +......-++.|+.|+|++|++.+.. ......++
T Consensus       198 ~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             hhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCccccccccccccccc
Confidence            9999999999544  33333333349999999999984311    11123445788999999999887432 24566789


Q ss_pred             CCCEEEccccccccccCCCCC------CCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccc
Q 039739          161 SLRILDVSSNQLTGSISSSPL------VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINA  224 (628)
Q Consensus       161 ~L~~L~l~~~~~~~~l~~~~l------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  224 (628)
                      .|+.|+++.+.+. ++.....      ...++|++|++..|.+...-....+..+++|+.+.+..+++..
T Consensus       272 ~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  272 GLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             chhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            9999999999876 3332223      4578999999999988755555666677788888877776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.7e-12  Score=121.57  Aligned_cols=183  Identities=23%  Similarity=0.223  Sum_probs=80.6

Q ss_pred             CCCccEEEcccccCCC--cccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc-ccccccCCCCC
Q 039739          335 LPSLFSLNISMNALDG--SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH-MFSRNFNLTNL  411 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L  411 (628)
                      |++++.|+|+.|-+..  .+.....++|+|+.|+++.|++.-.........++.|+.|.+++|.++.. .......+|+|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            4444444444443331  11222334445555555554433111111111245555555555555421 11223345555


Q ss_pred             cEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCCCCc-cc-----ccCCCCCC
Q 039739          412 RWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIP-VE-----FCQLDWLQ  484 (628)
Q Consensus       412 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----l~~l~~L~  484 (628)
                      +.|++.+|...........-+..|+.|++++|.+.+. .......++.|+.|.++.|.+...-. ..     ...+++|+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence            5555555531111111222344555555555554321 11234445555556555555542211 11     23456666


Q ss_pred             EEEccCCcC--cCCCCCCCCCCcccEEecCCCcCc
Q 039739          485 ILDISDNNI--SGSLPSCFHPLSVEQVHLSKNMLH  517 (628)
Q Consensus       485 ~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~  517 (628)
                      .|++..|++  +.+........+|+.|.+..|.+.
T Consensus       305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             eeecccCccccccccchhhccchhhhhhccccccc
Confidence            666666666  323333344555566665555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=2e-12  Score=119.09  Aligned_cols=139  Identities=21%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             ccCCCCccEEECcCCcccCccch---hhhcCCccccEEEccCCccCCccccc-------------ccCCCCCcEEEccCc
Q 039739          356 FGNMKFLQILDLSNNHLTGEIPE---HLVVGCVNLESLALSNNSLEGHMFSR-------------NFNLTNLRWLQLEGN  419 (628)
Q Consensus       356 ~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~-------------~~~~~~L~~L~l~~~  419 (628)
                      +..++.|++|+++.|.+....+.   .+.+++..|+.|++.+|.+.......             ...-+.|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            44455666666666655433332   22334556666666666554322111             122345555555555


Q ss_pred             cCcCc----ccccccCCCcccEEEccCCcCCCc----cCccccCCCCcceEECCCCcCCCCCc----ccccCCCCCCEEE
Q 039739          420 HFVGE----IPQSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQHIMMPKNHLEGPIP----VEFCQLDWLQILD  487 (628)
Q Consensus       420 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~  487 (628)
                      .+...    +...+...+.|+.+.+..|.+...    ....+.+|++|+.|+|.+|.++....    ..++.+++|+++.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            44311    123334444555555555544321    12334555555555555555442221    1244455555555


Q ss_pred             ccCCcCc
Q 039739          488 ISDNNIS  494 (628)
Q Consensus       488 l~~~~~~  494 (628)
                      +++|.+.
T Consensus       248 l~dcll~  254 (382)
T KOG1909|consen  248 LGDCLLE  254 (382)
T ss_pred             ccccccc
Confidence            5555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=2.1e-12  Score=118.95  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=21.1

Q ss_pred             hhhhcccCCCCcEEecCCCCCCCcchhHhhc
Q 039739           23 ATQELHNFTNLEYLTLDSSSLHISLLQSIAS   53 (628)
Q Consensus        23 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~   53 (628)
                      ..+.+.....++.+++|+|.|..+....++.
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~   52 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAK   52 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHH
Confidence            4455666677888888888777666666555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=2.4e-11  Score=109.48  Aligned_cols=203  Identities=21%  Similarity=0.226  Sum_probs=97.3

Q ss_pred             ccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCc-cCcCcccccccCC
Q 039739          354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN-HFVGEIPQSLSKC  432 (628)
Q Consensus       354 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~  432 (628)
                      -.+.-+.+|+.+.++.|... .+.+... .-|.|+++.+.+..+..  ...+--+..+.......- -..+.....+...
T Consensus       208 f~l~~f~~l~~~~~s~~~~~-~i~~~~~-~kptl~t~~v~~s~~~~--~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  208 FNLNAFRNLKTLKFSALSTE-NIVDIEL-LKPTLQTICVHNTTIQD--VPSLLPETILADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             cchHHhhhhheeeeeccchh-heeceee-cCchhheeeeecccccc--cccccchhhhcCccCCCCCccCCceEEecchH
Confidence            33444567777777776543 3333222 24677777766544322  111111111111111110 0111112222333


Q ss_pred             CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739          433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS  512 (628)
Q Consensus       433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  512 (628)
                      +.|+++++++|.++ .+.+.+.-.|.++.|+++.|.+...  ..+..+++|+.||+++|.++........+-++++|.++
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            45677777777665 5555666667777777777776533  23666777777777777665322211224445555555


Q ss_pred             CCcCcCCCCccccccCCCccEEECCCcccCCcc-chhhcCCCCCcEEECCCCcCC
Q 039739          513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNI-SDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      +|.+.  -..+ ++.+.+|..||+++|+|.... ...++++|.|+.+.|.+|++.
T Consensus       361 ~N~iE--~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  361 QNKIE--TLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhHh--hhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            55441  1111 444455555555555543211 123444555555555555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.07  E-value=7e-12  Score=122.66  Aligned_cols=190  Identities=26%  Similarity=0.339  Sum_probs=120.3

Q ss_pred             cEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCC
Q 039739          388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN  467 (628)
Q Consensus       388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  467 (628)
                      ...+++.|++. ..+..+..|..|+.+.++.|.+. .+|..+..+..|++++++.|.+. .+|..+..+ -|+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence            44566666654 34455556667777777777666 56777777777777777777776 444444443 3677777777


Q ss_pred             cCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch
Q 039739          468 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD  547 (628)
Q Consensus       468 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  547 (628)
                      +++ .+|..+...+.|..||.+.|++....+....+.+|+.|++.+|++. .+|+. +. .-.|..||+|+|++. .+|-
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~-~LpLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LC-SLPLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-Hh-CCceeeeecccCcee-ecch
Confidence            776 5566666777777777777777644444555667777777777764 34443 33 345667777777776 5666


Q ss_pred             hhcCCCCCcEEECCCCcCCccCCccccC---CCCCcEEECCCC
Q 039739          548 WVDGLSQLSHLILGHNNLEGEVPVQLCK---LNQLQLLDLSNN  587 (628)
Q Consensus       548 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~---l~~L~~L~l~~~  587 (628)
                      .|..|+.|++|.|.+|+++ +=|..++-   ..=.++|+.+-|
T Consensus       229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            7777777777777777776 33332221   233466666666

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.01  E-value=7.6e-12  Score=117.96  Aligned_cols=111  Identities=21%  Similarity=0.205  Sum_probs=52.6

Q ss_pred             CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccc-cccccccCCCccccCccc
Q 039739            7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGC-EVNGLVRGQGFPHFKSLE   84 (628)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~   84 (628)
                      |+.|.++++.-.+...+-....+||++++|.+.+| .+++.....+++.|++|++|++..| .++......-...|++|.
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            45555555544444444444555555555555555 4455555555555555555555554 233222111223455555


Q ss_pred             eeecccchhhcCcchhhhhhccCCCccEEeeccc
Q 039739           85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGS  118 (628)
Q Consensus        85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  118 (628)
                      +|++++|. .+.+...+.+.++++.++.+.+.||
T Consensus       220 ~lNlSwc~-qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  220 YLNLSWCP-QISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             HhhhccCc-hhhcCcchHHhccchhhhhhhhccc
Confidence            55555553 3333333334444444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=8.7e-11  Score=105.93  Aligned_cols=141  Identities=20%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             cccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCc
Q 039739          452 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSL  531 (628)
Q Consensus       452 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  531 (628)
                      .+.-...|+++++++|.++ .+..+..-.|+++.|+++.|.+.. ......+++|..|++++|.++ .+..+ -..+-++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH-hhhhh-HhhhcCE
Confidence            3444578999999999998 556678889999999999999984 444556899999999999985 33322 4456789


Q ss_pred             cEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccC-CccccCCCCCcEEECCCCcccccccccccc
Q 039739          532 VTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNSLHGSIPLCLDN  599 (628)
Q Consensus       532 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~  599 (628)
                      +.|.+++|.+.  ....++.+-+|.+||+++|+|.... -..++++|-|+.+.+.+|++. .+|+--.+
T Consensus       355 KtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vdYRTK  420 (490)
T KOG1259|consen  355 KTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVDYRTK  420 (490)
T ss_pred             eeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccchHHHH
Confidence            99999999885  3566888889999999999997433 346889999999999999999 57765544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.8e-10  Score=98.76  Aligned_cols=125  Identities=25%  Similarity=0.266  Sum_probs=40.1

Q ss_pred             CCCcceEECCCCcCCCCCccccc-CCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEE
Q 039739          456 LTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL  534 (628)
Q Consensus       456 ~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  534 (628)
                      +..+++|++.+|.+...  ..+. .+.+|+.|++++|.+. .......++.|+.|++++|.++ .+.......+|+|+.|
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            34455555555555422  1232 3455555555555555 2333333455555555555553 3333212356778888


Q ss_pred             ECCCcccCCc-cchhhcCCCCCcEEECCCCcCCccCCc----cccCCCCCcEEECC
Q 039739          535 DLSYNRLNGN-ISDWVDGLSQLSHLILGHNNLEGEVPV----QLCKLNQLQLLDLS  585 (628)
Q Consensus       535 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~l~  585 (628)
                      ++++|++... ....+..+++|+.|++.+|+++. .+.    .+..+|+|+.||-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence            8887777642 12456677888888888888773 232    35667777777643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.96  E-value=3.5e-11  Score=113.58  Aligned_cols=267  Identities=20%  Similarity=0.124  Sum_probs=167.5

Q ss_pred             CCCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEeccccc-ccccccCCCccc
Q 039739            2 GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGCE-VNGLVRGQGFPH   79 (628)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~   79 (628)
                      .+++++++|++.++........-..-..|++|++|++..| .+++.....+++.|++|++|++++|. +.+..-...+++
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            4689999999999964332344444455899999999996 78888788888889999999999995 444222224577


Q ss_pred             cCccceeecccchhhcCcchhhhhhccCCCccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCcccc-cCchhh-
Q 039739           80 FKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCL-  156 (628)
Q Consensus        80 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l-  156 (628)
                      ++.++.+.+.||. .........+..++..+..+++..|.. ++.++.   ..-..+..|++|..+++...+ .....+ 
T Consensus       241 ~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---~i~~~c~~lq~l~~s~~t~~~d~~l~aLg  316 (483)
T KOG4341|consen  241 CKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW---LIACGCHALQVLCYSSCTDITDEVLWALG  316 (483)
T ss_pred             chhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhccccchHHH---HHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence            8889998888884 344444455555578888888888855 442211   123568899999998875432 222223 


Q ss_pred             hcCCCCCEEEccccccccccCCCCC-CCCCcccEEEcccCeeeeecCC-CCcCCCCcccEEeccCCcccccc-ccccc-C
Q 039739          157 ANMTSLRILDVSSNQLTGSISSSPL-VHLTSIEELYLSNNHFQIPISL-EPFFNHSRLKSFYADNNEINAEI-TQSHS-L  232 (628)
Q Consensus       157 ~~l~~L~~L~l~~~~~~~~l~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~-~  232 (628)
                      .++.+|+.+-+++|+--+......+ .+++.|+.+++..+........ ..-.+++.|+++.++.|....+. ..... .
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            4678999999999873222222122 3678999999998876533322 22357889999999887643221 11000 0


Q ss_pred             ccCcccceeeeccCCCCCCcccccccccCCCccEEEccCC
Q 039739          233 TAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHI  272 (628)
Q Consensus       233 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  272 (628)
                      ......++.+.+.............+..|++|+.+++-++
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            1222244455553333333344444455555555555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.93  E-value=1.3e-09  Score=111.44  Aligned_cols=178  Identities=34%  Similarity=0.474  Sum_probs=94.3

Q ss_pred             CCCcEEEccCccCcCcccccccCCC-cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEE
Q 039739          409 TNLRWLQLEGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD  487 (628)
Q Consensus       409 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  487 (628)
                      +.++.|++.++.++ .++....... +|+.|++++|.+. ..+..+..++.|+.|++++|.+. ..+......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            44445555544444 2222233332 4555555555544 22234455555555555555555 2222333555555666


Q ss_pred             ccCCcCcCCCCCCC-CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          488 ISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       488 l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      +++|++. ..|... .+..|+++.+++|+.. ..+.. +..+..+..|.+.+|++.. .+..++.+++++.|++++|.++
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence            6666555 233222 2344666666666432 22222 5556666666666666652 2556667777777777777777


Q ss_pred             ccCCccccCCCCCcEEECCCCcccccccc
Q 039739          567 GEVPVQLCKLNQLQLLDLSNNSLHGSIPL  595 (628)
Q Consensus       567 ~~~~~~l~~l~~L~~L~l~~~~~~~~ip~  595 (628)
                       .++. +..+.+|+.|+++++.++..+|.
T Consensus       269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         269 -SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -cccc-ccccCccCEEeccCccccccchh
Confidence             3333 66777777777777777644333

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=4.4e-09  Score=91.31  Aligned_cols=129  Identities=24%  Similarity=0.363  Sum_probs=51.2

Q ss_pred             CCCCCCEEeCCCCCCCCccchhhhcc-cCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCc-ccc
Q 039739            3 SFPSLNTLYLSSNNFTDIATATQELH-NFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGF-PHF   80 (628)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l   80 (628)
                      +...+++|+|+++.|+.+..    ++ .+.+|+.|++++|.++.  ...+.. +++|+.|++++|.+.....  .+ ..+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~--l~~l~~-L~~L~~L~L~~N~I~~i~~--~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITK--LEGLPG-LPRLKTLDLSNNRISSISE--GLDKNL   87 (175)
T ss_dssp             -------------------S------TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CH--HHHHH-
T ss_pred             cccccccccccccccccccc----hhhhhcCCCEEECCCCCCcc--ccCccC-hhhhhhcccCCCCCCcccc--chHHhC
Confidence            45568999999999987543    44 46789999999999874  345666 8999999999999885422  34 468


Q ss_pred             CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCC-CCCCccccccccCCCCCcEEEcc
Q 039739           81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG-TNSSRILDRGLCSLVHLQVLNIA  144 (628)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~l~~L~~L~L~  144 (628)
                      ++|++|++++|.+...+. ...+.. +++|++|++.+|.+. ...-.  ...+..+|+|+.||-.
T Consensus        88 p~L~~L~L~~N~I~~l~~-l~~L~~-l~~L~~L~L~~NPv~~~~~YR--~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNE-LEPLSS-LPKLRVLSLEGNPVCEKKNYR--LFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TT--EEE-TTS---SCCC-CGGGGG--TT--EEE-TT-GGGGSTTHH--HHHHHH-TT-SEETTE
T ss_pred             CcCCEEECcCCcCCChHH-hHHHHc-CCCcceeeccCCcccchhhHH--HHHHHHcChhheeCCE
Confidence            999999999996543333 355666 999999999999883 32111  2357789999999754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.5e-10  Score=104.34  Aligned_cols=184  Identities=21%  Similarity=0.193  Sum_probs=91.8

Q ss_pred             CCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCcc
Q 039739           32 NLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLK  111 (628)
Q Consensus        32 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  111 (628)
                      .|++||||...++......+-..|.+|+.|.+.+..+.+.+-. .+.+-.+|+.|+++.|. .+.......+..+|+.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccc-ccchhHHHHHHHhhhhHh
Confidence            3666666666665544444333366666666666655544332 45555666666666653 333333344444466666


Q ss_pred             EEeeccccCCCCCCccccccccCCCCCcEEEccCCccc---ccCchhhhcCCCCCEEEcccccc-ccccCCCCCCCCCcc
Q 039739          112 YLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR---GSLPWCLANMTSLRILDVSSNQL-TGSISSSPLVHLTSI  187 (628)
Q Consensus       112 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~-~~~l~~~~l~~l~~L  187 (628)
                      .|+++.|......+.+....+  -++|+.|+++++.-.   ..+..-...+++|.+||++.|.. +..... .+-+++.|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L  340 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYL  340 (419)
T ss_pred             hcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchh
Confidence            666666655222221111111  245666666665321   11112234566666666666542 211111 34556666


Q ss_pred             cEEEcccCeeeeecCCCCcCCCCcccEEeccCC
Q 039739          188 EELYLSNNHFQIPISLEPFFNHSRLKSFYADNN  220 (628)
Q Consensus       188 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  220 (628)
                      ++|.++.|..-.....-.+...+.|.+|++.++
T Consensus       341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            667666664322222223455566666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.3e-09  Score=75.45  Aligned_cols=61  Identities=41%  Similarity=0.486  Sum_probs=46.1

Q ss_pred             CCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739          529 YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL  589 (628)
Q Consensus       529 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  589 (628)
                      |+|+.|++++|++....+..|..+++|+.|++++|.++...++.|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677788888877766666777788888888888887766667778888888888887764

...

>PLN03150 hypothetical protein; Provisional

Probab=98.79  E-value=8.5e-09  Score=110.18  Aligned_cols=93  Identities=29%  Similarity=0.488  Sum_probs=54.1

Q ss_pred             ccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECC
Q 039739          506 VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS  585 (628)
Q Consensus       506 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  585 (628)
                      +..|+|++|.+.+.++.. +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            445555555555555554 5555566666666666555555555666666666666666655556656666666666666


Q ss_pred             CCcccccccccccc
Q 039739          586 NNSLHGSIPLCLDN  599 (628)
Q Consensus       586 ~~~~~~~ip~~~~~  599 (628)
                      +|++++.+|..+..
T Consensus       499 ~N~l~g~iP~~l~~  512 (623)
T PLN03150        499 GNSLSGRVPAALGG  512 (623)
T ss_pred             CCcccccCChHHhh
Confidence            66666666655543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=1.8e-08  Score=102.92  Aligned_cols=174  Identities=36%  Similarity=0.493  Sum_probs=68.1

Q ss_pred             CccCEEEccCCcCCcccchhhhhhCC-CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739          311 KRLGMLDISNNNFRGHIPVEIGDVLP-SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES  389 (628)
Q Consensus       311 ~~L~~L~l~~~~i~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  389 (628)
                      +.++.+++.++.++ .++..... .. +|+.|++++|.+. .+|..+..+++|+.|+++.|++. .++.... ..+.|+.
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~  190 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN  190 (394)
T ss_pred             cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence            34444444444444 33333322 21 4444444444444 22233444444444444444444 3332111 2344444


Q ss_pred             EEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcC
Q 039739          390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL  469 (628)
Q Consensus       390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  469 (628)
                      |++++|.+.... ........|+++.+++|... ..+..+..+..+..+.+.++.+. ..+..+..+++++.|++++|.+
T Consensus       191 L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         191 LDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence            444444443211 11112223444444444322 22233333444444444443332 1123334444444444444444


Q ss_pred             CCCCcccccCCCCCCEEEccCCcCc
Q 039739          470 EGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       470 ~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      .....  +..+.+++.|+++++.+.
T Consensus       268 ~~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         268 SSISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccccc--ccccCccCEEeccCcccc
Confidence            32221  444444444444444443

>PLN03150 hypothetical protein; Provisional

Probab=98.73  E-value=2.8e-08  Score=106.28  Aligned_cols=109  Identities=30%  Similarity=0.432  Sum_probs=64.6

Q ss_pred             cceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCC
Q 039739          459 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY  538 (628)
Q Consensus       459 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  538 (628)
                      ++.|++++|.+.+..|..+..+++|+.|++++|.+.                       +.+|.. +..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-----------------------g~iP~~-~~~l~~L~~LdLs~  475 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-----------------------GNIPPS-LGSITSLEVLDLSY  475 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-----------------------CcCChH-HhCCCCCCEEECCC
Confidence            455555555555555555555555555555555554                       444444 55566666666666


Q ss_pred             cccCCccchhhcCCCCCcEEECCCCcCCccCCccccCC-CCCcEEECCCCcccc
Q 039739          539 NRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNSLHG  591 (628)
Q Consensus       539 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l-~~L~~L~l~~~~~~~  591 (628)
                      |++++.+|+.++.+++|+.|+|++|++++.+|..+... .++..+++.+|+...
T Consensus       476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            66666666666666666666666666666666665543 345566666665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.72  E-value=9.3e-10  Score=108.13  Aligned_cols=193  Identities=27%  Similarity=0.368  Sum_probs=139.9

Q ss_pred             CCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739          310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES  389 (628)
Q Consensus       310 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  389 (628)
                      +..-...+++.|.+. ++|..++. |..|+.+.+..|.+. .+|..+.++..|+.++++.|++. ..|..++  .--|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence            344556777778776 77877766 667888888887777 66777888888888888888887 7776665  345788


Q ss_pred             EEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcC
Q 039739          390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL  469 (628)
Q Consensus       390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  469 (628)
                      |.+++|+++. .+..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.++.|.+. .+|+.+. .-.|..|+++.|++
T Consensus       148 li~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce
Confidence            8888887763 5566667778888888888876 56777788888888888888776 5555555 45677888888888


Q ss_pred             CCCCcccccCCCCCCEEEccCCcCcCCCCCCCC----CCcccEEecCCC
Q 039739          470 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFH----PLSVEQVHLSKN  514 (628)
Q Consensus       470 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~L~~L~l~~n  514 (628)
                      . .+|..|..++.|++|-+.+|++. +.|-.+.    ..-.|+|+..-|
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            7 77888888888888888888887 3333221    233455555555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=2.7e-08  Score=108.68  Aligned_cols=303  Identities=24%  Similarity=0.239  Sum_probs=179.7

Q ss_pred             ccCcEEEeecCCCCCCCCcccccCCccCEEEccCCc--CCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccE
Q 039739          287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN--FRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI  364 (628)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  364 (628)
                      ...+.+.+.++.+....  .-..+++|++|-+.++.  +. .++..++..+|.|+.|++++|.-.+.+|..++.+-+|+.
T Consensus       523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            45556666555443211  12245678888888875  44 677777777899999999988777788999999999999


Q ss_pred             EECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC--cCcccccccCCCcccEEEccC
Q 039739          365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF--VGEIPQSLSKCFVLEGLFLNN  442 (628)
Q Consensus       365 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~  442 (628)
                      |+++++.+. .+|..+. .+..|.+|++..+......+.....+++|++|.+.....  +......+..+.+|+.+.+..
T Consensus       600 L~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999999887 7887654 478888998887765444455555688999998876542  112233445555666665544


Q ss_pred             CcCCCccCccccCCCCcc----eEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-------CCcccEEec
Q 039739          443 NSLSGKIPRWLGNLTRLQ----HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-------PLSVEQVHL  511 (628)
Q Consensus       443 ~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~L~~L~l  511 (628)
                      ...  .....+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++...+.......       .+++..+.+
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            332  1112233344443    2332333322 4445577888899999988887644332211       223444444


Q ss_pred             CCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCcc-CCccccC----------CCCCc
Q 039739          512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGE-VPVQLCK----------LNQLQ  580 (628)
Q Consensus       512 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~----------l~~L~  580 (628)
                      .++...... .+ ....++|+.|.+..|.....+......+..+..+.+..+...+. .......          .+.|+
T Consensus       755 ~~~~~~r~l-~~-~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~  832 (889)
T KOG4658|consen  755 LNCHMLRDL-TW-LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLE  832 (889)
T ss_pred             hcccccccc-ch-hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchh
Confidence            444432111 11 33467888888888865444333333444444333333333211 0001111          12377


Q ss_pred             EEECCCCcccccccccccc
Q 039739          581 LLDLSNNSLHGSIPLCLDN  599 (628)
Q Consensus       581 ~L~l~~~~~~~~ip~~~~~  599 (628)
                      .+.+..|+-.+++|...+.
T Consensus       833 ~~~ve~~p~l~~~P~~~~~  851 (889)
T KOG4658|consen  833 ELIVEECPKLGKLPLLSTL  851 (889)
T ss_pred             heehhcCcccccCcccccc
Confidence            7888888888888877655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.5e-09  Score=96.67  Aligned_cols=183  Identities=17%  Similarity=0.134  Sum_probs=135.6

Q ss_pred             CCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEeccccc-ccccccCCCccccCccc
Q 039739            6 SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCE-VNGLVRGQGFPHFKSLE   84 (628)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~   84 (628)
                      .|++|||++..++. ..+--.++.|.+|+.|.+.++.+++.....+++ -.+|+.|+++.|. ++.....-.+.+|+.|.
T Consensus       186 Rlq~lDLS~s~it~-stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV-STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeH-HHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence            48899999988854 345567888999999999999999999999999 9999999999985 44433333568899999


Q ss_pred             eeecccchhhcCcchhhhhhccCCCccEEeeccccC--CCCCCccccccccCCCCCcEEEccCCcc-cccCchhhhcCCC
Q 039739           85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL--GTNSSRILDRGLCSLVHLQVLNIAYNDL-RGSLPWCLANMTS  161 (628)
Q Consensus        85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~l~~l~~  161 (628)
                      .|++++|... .......+.+--++|..|+++|+.-  ..+.  +. --..++++|..|||++|.. .......|.+++.
T Consensus       264 ~LNlsWc~l~-~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh--~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  264 ELNLSWCFLF-TEKVTVAVAHISETLTQLNLSGYRRNLQKSH--LS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hcCchHhhcc-chhhhHHHhhhchhhhhhhhhhhHhhhhhhH--HH-HHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            9999999422 2223334444456899999999865  3321  21 1346899999999998854 3334456678899


Q ss_pred             CCEEEccccccccccCCC--CCCCCCcccEEEcccCe
Q 039739          162 LRILDVSSNQLTGSISSS--PLVHLTSIEELYLSNNH  196 (628)
Q Consensus       162 L~~L~l~~~~~~~~l~~~--~l~~l~~L~~L~l~~~~  196 (628)
                      |++|.++.|.-.  +|..  .+...|+|.+|++.++-
T Consensus       340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             heeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            999999998632  2221  35678999999998874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=3e-08  Score=108.31  Aligned_cols=63  Identities=33%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             cccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCc
Q 039739          307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH  371 (628)
Q Consensus       307 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (628)
                      |..+|.|+.|++++|.-.+.+|..+.. +-+|+.|+++++.+. .+|.++..+..|.+|++..+.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence            444455555555544333345544444 445555555555444 445555555555555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.62  E-value=3.6e-08  Score=70.02  Aligned_cols=59  Identities=31%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             CccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccc
Q 039739          109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQ  171 (628)
Q Consensus       109 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~  171 (628)
                      +|++|++++|.+..    ++.+.|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTE----IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESE----ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCc----cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555544    444455555555555555555554444455555555555555554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=7.5e-09  Score=93.63  Aligned_cols=212  Identities=15%  Similarity=0.109  Sum_probs=133.4

Q ss_pred             CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCC-cchhHhhccCCCCceEecccccccccccCCCc-cccCccc
Q 039739            7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHI-SLLQSIASIFPSLKNLSMIGCEVNGLVRGQGF-PHFKSLE   84 (628)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~   84 (628)
                      ++.|-+.++.|-.+...-..=+.+.++++++|.+|.|++ +...++...+|.|+.|+++.|.+...+..  + ...++|+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLR  124 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceE
Confidence            345555566553332222223346788889998888875 22334444488899999988887765443  3 3567888


Q ss_pred             eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCC-CCCcEEEccCCcccc--cCchhhhcCCC
Q 039739           85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSL-VHLQVLNIAYNDLRG--SLPWCLANMTS  161 (628)
Q Consensus        85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~--~~~~~l~~l~~  161 (628)
                      +|-|.|.+  ..-.....+...+|.++.|.++.|....-.  +........ +.+++|.+..|...-  ..-.--..+++
T Consensus       125 ~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~N~~rq~n--~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  125 VLVLNGTG--LSWTQSTSSLDDLPKVTELHMSDNSLRQLN--LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             EEEEcCCC--CChhhhhhhhhcchhhhhhhhccchhhhhc--cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            88888884  333344444444888888888887542200  111122222 356666666654321  00011123577


Q ss_pred             CCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccc
Q 039739          162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINA  224 (628)
Q Consensus       162 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  224 (628)
                      +..+-+..|.+...-........+.+-.|+++.+.+......+.+.+++.|..+.+.++++.+
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            888888888776444444567778888899999988877777888999999999998887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.57  E-value=9.9e-09  Score=104.89  Aligned_cols=222  Identities=27%  Similarity=0.282  Sum_probs=101.0

Q ss_pred             ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739          356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL  435 (628)
Q Consensus       356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  435 (628)
                      +..+++|+.+++.+|.+. .+... ...+++|++|++++|.++.  ...+..++.|+.|++.+|.+...  ..+..++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISDI--SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc--ccchhhccchhhheeccCcchhc--cCCccchhh
Confidence            334444555555555443 22221 1124555555555555443  22333344455555555554421  223334555


Q ss_pred             cEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCC--cccEEecC
Q 039739          436 EGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--SVEQVHLS  512 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~  512 (628)
                      +.+++++|.+....+ . ...+.+++.+++.+|.+...  ..+..+..+..+++.+|.++. ........  .|+.+.+.
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLS  240 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcc
Confidence            555555555542222 1 34455555566665555422  223333344444555555442 22122122  25566666


Q ss_pred             CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc---cCCcc-ccCCCCCcEEECCCCc
Q 039739          513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG---EVPVQ-LCKLNQLQLLDLSNNS  588 (628)
Q Consensus       513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~---~~~~~-l~~l~~L~~L~l~~~~  588 (628)
                      +|++. .++.. +..+..+..|++..+++..  .+.+...+.+..+....+.+..   ..... ....+++..+.+.+++
T Consensus       241 ~n~i~-~~~~~-~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (414)
T KOG0531|consen  241 GNRIS-RSPEG-LENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP  316 (414)
T ss_pred             cCccc-ccccc-ccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence            66553 22122 4455666666666666542  2234444555555555555431   11111 3445566666666666


Q ss_pred             ccc
Q 039739          589 LHG  591 (628)
Q Consensus       589 ~~~  591 (628)
                      +..
T Consensus       317 ~~~  319 (414)
T KOG0531|consen  317 IRK  319 (414)
T ss_pred             ccc
Confidence            654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.51  E-value=1.2e-08  Score=104.31  Aligned_cols=195  Identities=26%  Similarity=0.304  Sum_probs=87.4

Q ss_pred             CccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEE
Q 039739          286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQIL  365 (628)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L  365 (628)
                      +..++.+.+..+.+.. ....+..+.+++.+++.+|.+. .+...+ ..+++|+.|++++|.|+..  ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheeccccccccc--cchhhccchhhh
Confidence            3444444454444433 1122445555666666665554 222111 1245555566655555532  123444445555


Q ss_pred             ECcCCcccCccchhhhcCCccccEEEccCCccCCccc-ccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc
Q 039739          366 DLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF-SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS  444 (628)
Q Consensus       366 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  444 (628)
                      ++.+|.+. .+..  +..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+...  ..+..+..+..+++..+.
T Consensus       146 ~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  146 NLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             eeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence            55555554 3333  2225555555555555543222 1 23455555555555554321  122223333333444444


Q ss_pred             CCCccCccccCCCC--cceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          445 LSGKIPRWLGNLTR--LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       445 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      +...  ..+..+..  |+.+++.++++. ..+..+..++.+..+++.++++.
T Consensus       220 i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  220 ISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            4311  11122222  555666665554 22234445555555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.6e-07  Score=85.18  Aligned_cols=228  Identities=20%  Similarity=0.137  Sum_probs=119.9

Q ss_pred             CccEEECcCCcccCccch-hhhcCCccccEEEccCCccCCc--ccccccCCCCCcEEEccCccCcCcccccccCCCcccE
Q 039739          361 FLQILDLSNNHLTGEIPE-HLVVGCVNLESLALSNNSLEGH--MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEG  437 (628)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  437 (628)
                      .++.+.+.++.+...... .+.+.+..++.+++.+|.+++.  ....+.++|.|++|+++.|++...+..--....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344555555554422221 1223456666777777766542  2334456777777777776665322211134556777


Q ss_pred             EEccCCcCCC-ccCccccCCCCcceEECCCCcCCCCC--cccccCC-CCCCEEEccCCcCcCCCCC---CCCCCcccEEe
Q 039739          438 LFLNNNSLSG-KIPRWLGNLTRLQHIMMPKNHLEGPI--PVEFCQL-DWLQILDISDNNISGSLPS---CFHPLSVEQVH  510 (628)
Q Consensus       438 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l-~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~  510 (628)
                      |.+++..+.- .....+..+|.+++|.|+.|......  ....... +.++.|....|...-+...   .-.++++..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            7776665431 12334455666666666666332111  1111111 2334444444422111000   01156666777


Q ss_pred             cCCCcCcCCCCccccccCCCccEEECCCcccCCcc-chhhcCCCCCcEEECCCCcCCccCCc------cccCCCCCcEEE
Q 039739          511 LSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNI-SDWVDGLSQLSHLILGHNNLEGEVPV------QLCKLNQLQLLD  583 (628)
Q Consensus       511 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~------~l~~l~~L~~L~  583 (628)
                      +..|++........+...|++.-|+|+.+++.+.. .+.+..++.|..|.+.++++...+..      .++.+++++.|+
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            77776643333333555677778888888876432 25677788888888888888754432      255667777665


Q ss_pred             CCCCccc
Q 039739          584 LSNNSLH  590 (628)
Q Consensus       584 l~~~~~~  590 (628)
                      =+  +|+
T Consensus       286 Gs--kIs  290 (418)
T KOG2982|consen  286 GS--KIS  290 (418)
T ss_pred             Cc--ccc
Confidence            43  554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.36  E-value=1.6e-07  Score=100.03  Aligned_cols=108  Identities=18%  Similarity=0.317  Sum_probs=58.2

Q ss_pred             CCCEEeCCCCCCCCccchhhhccc-CCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739            6 SLNTLYLSSNNFTDIATATQELHN-FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE   84 (628)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   84 (628)
                      +|++|++++..... ..++..++. +|.|++|.+.+-.+.......++..+|+|+.||++++.+...   .+++++++|+
T Consensus       123 nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  123 NLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             hhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            46666666654321 133333333 566666666665554444445555566666666666665543   2566666666


Q ss_pred             eeecccchhhcCc-chhhhhhccCCCccEEeeccccC
Q 039739           85 HLDMEGALIALNT-SFLQIIGESMPSLKYLSLFGSIL  120 (628)
Q Consensus        85 ~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~  120 (628)
                      +|.+.+-  .+.. .....+.+ +++|++||+|....
T Consensus       199 ~L~mrnL--e~e~~~~l~~LF~-L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  199 VLSMRNL--EFESYQDLIDLFN-LKKLRVLDISRDKN  232 (699)
T ss_pred             HHhccCC--CCCchhhHHHHhc-ccCCCeeecccccc
Confidence            6666554  2222 33344455 66666666665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=5.5e-08  Score=86.97  Aligned_cols=31  Identities=13%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             hhhhcccCCCCcEEecCCCCCCCcchhHhhc
Q 039739           23 ATQELHNFTNLEYLTLDSSSLHISLLQSIAS   53 (628)
Q Consensus        23 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~   53 (628)
                      ..+.+..+..+..++||+|.|..+....+++
T Consensus        22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~   52 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGTEAMEELCN   52 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccHHHHHHHHH
Confidence            3444555677788888888887776777766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.34  E-value=1.2e-07  Score=101.10  Aligned_cols=212  Identities=19%  Similarity=0.275  Sum_probs=107.2

Q ss_pred             CCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCC------------c--cccCccceeecccchhhc
Q 039739           30 FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQG------------F--PHFKSLEHLDMEGALIAL   95 (628)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------------~--~~l~~L~~L~l~~~~~~~   95 (628)
                      --+++..++.+..........+..  ..|+.+.+.+...........            +  ..-.+|++|+++|.. .+
T Consensus        59 ~f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~-~~  135 (699)
T KOG3665|consen   59 KFNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE-LF  135 (699)
T ss_pred             hheeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc-hh
Confidence            345666666666555444444443  337777776654332211100            0  112456666666654 34


Q ss_pred             CcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccc
Q 039739           96 NTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGS  175 (628)
Q Consensus        96 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  175 (628)
                      ...++..++.-+|.|++|.+++-.+...   -......++++|+.||+|++++...  ..                    
T Consensus       136 s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~G--------------------  190 (699)
T KOG3665|consen  136 SNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SG--------------------  190 (699)
T ss_pred             hccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HH--------------------
Confidence            5555666666566666666665444110   1111233455555555555544422  33                    


Q ss_pred             cCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccc
Q 039739          176 ISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFP  255 (628)
Q Consensus       176 l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  255 (628)
                           +.++++|+.|.+.+-.+........+.++++|++||++........           .+-           ....
T Consensus       191 -----IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii-----------~qYl  243 (699)
T KOG3665|consen  191 -----ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KII-----------EQYL  243 (699)
T ss_pred             -----HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHH-----------HHHH
Confidence                 4444555555444444332222233445555555555543321100           000           0111


Q ss_pred             cccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeec
Q 039739          256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN  296 (628)
Q Consensus       256 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  296 (628)
                      +.-..+|+|+.||.+++.+.+...+.+....++|+.+..-+
T Consensus       244 ec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  244 ECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             HhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence            22234678999999999888777777777778887776544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.33  E-value=1.2e-07  Score=84.87  Aligned_cols=97  Identities=22%  Similarity=0.246  Sum_probs=46.4

Q ss_pred             hhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccc---cc-------CchhhhcCCCCCEEEcccc
Q 039739          101 QIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR---GS-------LPWCLANMTSLRILDVSSN  170 (628)
Q Consensus       101 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~-------~~~~l~~l~~L~~L~l~~~  170 (628)
                      ..+.. +..+..+++|||.++.+..+.....+.+-.+|+..++++-...   +.       +...+..|++|+.++++.|
T Consensus        24 eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            33444 5556666666666544333333334455555666655543211   11       1223445566666666666


Q ss_pred             ccccccCCC---CCCCCCcccEEEcccCeee
Q 039739          171 QLTGSISSS---PLVHLTSIEELYLSNNHFQ  198 (628)
Q Consensus       171 ~~~~~l~~~---~l~~l~~L~~L~l~~~~~~  198 (628)
                      .+....|..   .+.+-+.|++|.+++|.+.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            554333220   1344455666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=2.7e-08  Score=100.76  Aligned_cols=126  Identities=26%  Similarity=0.390  Sum_probs=79.9

Q ss_pred             ccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCch-hhhcCC
Q 039739           82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMT  160 (628)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~l~~l~  160 (628)
                      .|.+.++++|.+...+...   .- ++.++.|+|++|++.+    .  +.+..|++|++|||++|.+.. +|. ....|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SL---ql-l~ale~LnLshNk~~~----v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~  233 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESL---QL-LPALESLNLSHNKFTK----V--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK  233 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHH---HH-HHHhhhhccchhhhhh----h--HHHHhcccccccccccchhcc-ccccchhhhh
Confidence            4555566665432222222   22 5677778888777733    2  367777888888888877763 232 223333


Q ss_pred             CCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcc
Q 039739          161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI  222 (628)
Q Consensus       161 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (628)
                       |+.|.+++|.++ ++-.  +.++.+|+.||+++|-+.+.-....+..+..|+.|++.+|.+
T Consensus       234 -L~~L~lrnN~l~-tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  234 -LQLLNLRNNALT-TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -heeeeecccHHH-hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence             777788877776 4443  777788888888887776655555666777777778877754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=4.9e-08  Score=98.97  Aligned_cols=86  Identities=26%  Similarity=0.259  Sum_probs=48.8

Q ss_pred             ccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCC
Q 039739          130 RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNH  209 (628)
Q Consensus       130 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l  209 (628)
                      .++.-++.|+.|+|+.|++...  +.+..|++|++||++.|.+. .+|......|. |..|.+++|.+..   .-.+.++
T Consensus       181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L~gie~L  253 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---LRGIENL  253 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---hhhHHhh
Confidence            3555566666666666666533  25666666666666666665 55553334443 6666666665542   1234455


Q ss_pred             CcccEEeccCCcc
Q 039739          210 SRLKSFYADNNEI  222 (628)
Q Consensus       210 ~~L~~L~l~~~~~  222 (628)
                      .+|+.|++++|-+
T Consensus       254 ksL~~LDlsyNll  266 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLL  266 (1096)
T ss_pred             hhhhccchhHhhh
Confidence            5556666655543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=2.8e-06  Score=54.94  Aligned_cols=40  Identities=35%  Similarity=0.596  Sum_probs=22.8

Q ss_pred             CCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739          553 SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       553 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip  594 (628)
                      ++|++|++++|+|+ .+|..+.+|++|+.|++++|+++ .+|
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            35666666666666 45555666666666666666665 343

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=3.1e-05  Score=76.08  Aligned_cols=169  Identities=17%  Similarity=0.202  Sum_probs=107.1

Q ss_pred             ccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccE
Q 039739          429 LSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQ  508 (628)
Q Consensus       429 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~  508 (628)
                      +..|..+++|++++|.+. .+| .  -.++|++|.+++|......|..+  .++|+.|++++|......     +.+|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccce
Confidence            455789999999999776 445 2  23579999999977655666544  468999999998432222     567888


Q ss_pred             EecCCCcCcCCCCccccccCCCccEEECCCcccC--CccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739          509 VHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN--GNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN  586 (628)
Q Consensus       509 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  586 (628)
                      |.+..+... .++.    -.++|+.|.+.+++..  ...+..+.  ++|+.|++++|... ..|+.+.  .+|+.|++..
T Consensus       117 L~L~~n~~~-~L~~----LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        117 LEIKGSATD-SIKN----VPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EEeCCCCCc-cccc----CcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            888766542 2221    1246888888654321  11121111  57999999999876 5566554  5889999887


Q ss_pred             Cc------cccccccccccccccccccCCcccccccEEEEEee
Q 039739          587 NS------LHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIE  623 (628)
Q Consensus       587 ~~------~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (628)
                      +.      ....+|+.+ .+.    ..+...++++.+.+-++.
T Consensus       187 n~~~sLeI~~~sLP~nl-~L~----f~n~lkL~~~~f~d~~i~  224 (426)
T PRK15386        187 EQKTTWNISFEGFPDGL-DID----LQNSVLLSPDVFKDKNIT  224 (426)
T ss_pred             cccccccCccccccccc-Eec----hhhhcccCHHHhhccccc
Confidence            63      223667666 322    222345666666665544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=6.4e-05  Score=73.90  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             CCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceE
Q 039739          383 GCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI  462 (628)
Q Consensus       383 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  462 (628)
                      .+.+++.|++++|.++... .   -.++|++|.+++|.....+|..+  .++|++|++++|.....+|      .+|+.|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP-V---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC-C---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceE
Confidence            3688888999888766432 1   12468888888876555566544  3578888888874322333      456777


Q ss_pred             ECCCCcCCCCCcccccCC-CCCCEEEccCCcCc-CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCc
Q 039739          463 MMPKNHLEGPIPVEFCQL-DWLQILDISDNNIS-GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN  539 (628)
Q Consensus       463 ~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  539 (628)
                      ++.++....     +..+ ++|+.|.+.+++.. ........|++|+.|.+.+|... .+|.. +  ..+|+.|.++.+
T Consensus       118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~-L--P~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK-L--PESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccc-c--cccCcEEEeccc
Confidence            776554321     1122 35667776543211 11111123577888888777754 23322 2  257777777665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.85  E-value=7.4e-07  Score=71.34  Aligned_cols=60  Identities=25%  Similarity=0.375  Sum_probs=28.7

Q ss_pred             CCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739          529 YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       529 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      +.++.|++++|.+. .+|+.+..++.|+.|+++.|++. ..|..+..+.+|..|+..++.+.
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34444444444444 33444555555555555555554 34444444555555555544444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=2.6e-05  Score=50.40  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=29.6

Q ss_pred             CCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          529 YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       529 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      ++|++|++++|+++. +|..++.+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            478899999999984 5556889999999999999988

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.76  E-value=5.7e-05  Score=65.21  Aligned_cols=107  Identities=25%  Similarity=0.250  Sum_probs=65.3

Q ss_pred             hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc-ccccccCCCCCc
Q 039739          334 VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH-MFSRNFNLTNLR  412 (628)
Q Consensus       334 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~  412 (628)
                      +......+++++|.+.. + ..|..++.|..|.++.|+|+ .+...+..-+++|..|.+.+|++... ....++.||.|+
T Consensus        40 ~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             cccccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            34556667777776552 1 23566677777777777776 55555555567777777777766432 133445677777


Q ss_pred             EEEccCccCcCcc---cccccCCCcccEEEccCC
Q 039739          413 WLQLEGNHFVGEI---PQSLSKCFVLEGLFLNNN  443 (628)
Q Consensus       413 ~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~  443 (628)
                      +|.+-+|++...-   ...+..+++|+.||+.+-
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7777777765321   134455666666666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=5.4e-05  Score=65.32  Aligned_cols=108  Identities=19%  Similarity=0.289  Sum_probs=61.4

Q ss_pred             CCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCcc
Q 039739           32 NLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLK  111 (628)
Q Consensus        32 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  111 (628)
                      +...++|++|.+..  ...+.. +++|..|.+.+|+++...|. --.-+++|+.|.|.+|.+.--+++ .-++. ||.|+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~-l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~-~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPH-LPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDL-DPLAS-CPKLE  116 (233)
T ss_pred             ccceecccccchhh--cccCCC-ccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhc-chhcc-CCccc
Confidence            45566777766532  233444 66777777777777655443 223356677777777643222222 22334 77777


Q ss_pred             EEeeccccC-CCCCCccccccccCCCCCcEEEccCCc
Q 039739          112 YLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYND  147 (628)
Q Consensus       112 ~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~  147 (628)
                      +|.+-++.+ ....-..  -.+.++++|+.||+..-.
T Consensus       117 ~Ltll~Npv~~k~~YR~--yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRL--YVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeeecCCchhcccCcee--EEEEecCcceEeehhhhh
Confidence            777777766 2212222  247778888888876543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.68  E-value=4.7e-06  Score=88.05  Aligned_cols=13  Identities=31%  Similarity=0.197  Sum_probs=6.9

Q ss_pred             CCCCcEEECCCCc
Q 039739          552 LSQLSHLILGHNN  564 (628)
Q Consensus       552 l~~L~~L~l~~~~  564 (628)
                      +.+++.+++.++.
T Consensus       426 ~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  426 CSNLKDLDLSGCR  438 (482)
T ss_pred             hhccccCCccCcc
Confidence            4445555555553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.64  E-value=4.6e-06  Score=88.10  Aligned_cols=138  Identities=22%  Similarity=0.234  Sum_probs=83.7

Q ss_pred             cccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccc-ccccccc---CCCccccCccceeecccchhhcCcchhh
Q 039739           27 LHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGC-EVNGLVR---GQGFPHFKSLEHLDMEGALIALNTSFLQ  101 (628)
Q Consensus        27 ~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~  101 (628)
                      ...++.|+.|.+..+ .+.+.....+...+++|+.|+++++ ......+   ......+++|+.|+++++. .+.+....
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~isd~~l~  262 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG-LVTDIGLS  262 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh-ccCchhHH
Confidence            344688888888876 4554444445445888888888763 2111111   1134567888888888873 25666666


Q ss_pred             hhhccCCCccEEeecccc-CCCCCCccccccccCCCCCcEEEccCCcccc--cCchhhhcCCCCCEEEcc
Q 039739          102 IIGESMPSLKYLSLFGSI-LGTNSSRILDRGLCSLVHLQVLNIAYNDLRG--SLPWCLANMTSLRILDVS  168 (628)
Q Consensus       102 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~  168 (628)
                      .++..|++|++|.+.+|. +++++  +. .....++.|++|++++|....  .+.....++++|+.+.+.
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~g--l~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEG--LV-SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhH--HH-HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            666668888888877776 33311  11 234667788888888776531  123334456666665543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.63  E-value=0.00017  Score=60.55  Aligned_cols=122  Identities=20%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             cccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCc
Q 039739          355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFV  434 (628)
Q Consensus       355 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  434 (628)
                      .|..+++|+.+.+.. .+. .+....+.++++|+.+.+..+ +.......+.++++++.+.+.+ .+.......+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            344555555555543 232 444444555555555555543 4333344444555555555543 222122334455556


Q ss_pred             ccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCC
Q 039739          435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL  483 (628)
Q Consensus       435 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  483 (628)
                      ++.+.+..+ +.......|.++ .|+.+.+.+ .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666665443 332334445555 666666554 2232444445555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=4.4e-05  Score=68.87  Aligned_cols=106  Identities=22%  Similarity=0.312  Sum_probs=58.0

Q ss_pred             CCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCC--CCCCcchhHhhccCCCCceEecccccccccccCCCccccC
Q 039739            4 FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSS--SLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFK   81 (628)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~   81 (628)
                      +..|+.|++.+..++.+..    +..+++|++|.+|.|  .+.+........ +|+|++|++++|.+...-.-..+..++
T Consensus        42 ~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             ccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhc
Confidence            4456666666666555322    555677777777777  555443433334 677777777777655321112356666


Q ss_pred             ccceeecccchhhcCcchhhhhhccCCCccEEe
Q 039739           82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLS  114 (628)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  114 (628)
                      +|..|++..|......+.-..++.-+++|++|+
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            677777776632222222223333255555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.49  E-value=0.00027  Score=59.22  Aligned_cols=119  Identities=24%  Similarity=0.308  Sum_probs=49.9

Q ss_pred             CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739          335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL  414 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  414 (628)
                      +++|+.+.+.. .+.......|..+++|+.+.+.++ +. .++...+.++++++.+.+.. .+.......+..+++|+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            45566666553 333333445666666777766653 33 55666666666677777754 3333333455556677777


Q ss_pred             EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcc
Q 039739          415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ  460 (628)
Q Consensus       415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  460 (628)
                      .+..+ +.......+.++ .++.+.+.. .+.......|.++++|+
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            76543 333344556665 777776665 33334455666666653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.39  E-value=1.5e-05  Score=64.13  Aligned_cols=82  Identities=23%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739          107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS  186 (628)
Q Consensus       107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~  186 (628)
                      ..+|...++++|.+.+    .|.+--.+.+.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|. .+..+.+
T Consensus        52 ~~el~~i~ls~N~fk~----fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L~~  124 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK----FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPLIK  124 (177)
T ss_pred             CceEEEEecccchhhh----CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHHHh
Confidence            3444444444444433    33222233344444444444444 33444444444444444444443 3333 3333444


Q ss_pred             ccEEEcccC
Q 039739          187 IEELYLSNN  195 (628)
Q Consensus       187 L~~L~l~~~  195 (628)
                      +-.|+..++
T Consensus       125 l~~Lds~~n  133 (177)
T KOG4579|consen  125 LDMLDSPEN  133 (177)
T ss_pred             HHHhcCCCC
Confidence            444444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=5.5e-05  Score=68.51  Aligned_cols=100  Identities=24%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceE
Q 039739          384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHI  462 (628)
Q Consensus       384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L  462 (628)
                      +.+.++|++-+|.+++  ......|+.|++|.++-|+++..  ..+..|+.|++|+++.|.|.+. ....+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            4566777777777765  33445788888888888887643  3467888888888888877532 22356788888888


Q ss_pred             ECCCCcCCCCCccc-----ccCCCCCCEEE
Q 039739          463 MMPKNHLEGPIPVE-----FCQLDWLQILD  487 (628)
Q Consensus       463 ~l~~~~~~~~~~~~-----l~~l~~L~~L~  487 (628)
                      ++..|.--+..+..     +..+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88887654333222     55677777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.00062  Score=61.68  Aligned_cols=88  Identities=24%  Similarity=0.348  Sum_probs=50.7

Q ss_pred             CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccC
Q 039739           55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCS  134 (628)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  134 (628)
                      +..|+.|.+.++..+..   ..|..+++|+.|.++.+.......+..-... +++|++|++++|++..  + -....+..
T Consensus        42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~--l-stl~pl~~  114 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKD--L-STLRPLKE  114 (260)
T ss_pred             ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccc--c-cccchhhh
Confidence            55566666666555432   2466777888888877743333333332333 6778888887777632  0 00123556


Q ss_pred             CCCCcEEEccCCccc
Q 039739          135 LVHLQVLNIAYNDLR  149 (628)
Q Consensus       135 l~~L~~L~L~~~~~~  149 (628)
                      +.+|..|++.+|..+
T Consensus       115 l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVT  129 (260)
T ss_pred             hcchhhhhcccCCcc
Confidence            666667777766554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00045  Score=62.79  Aligned_cols=104  Identities=23%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739           31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSL  110 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  110 (628)
                      .+.+.|++.+|.+++.   .++.-++.|+.|.|+-|.++..-   .+..|++|++|.|+.|.|..- .....+.+ +++|
T Consensus        19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sl-dEL~YLkn-lpsL   90 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESL-DELEYLKN-LPSL   90 (388)
T ss_pred             HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccH-HHHHHHhc-Cchh
Confidence            3556666666666532   22222666777777666665432   366667777777766632111 12223333 6666


Q ss_pred             cEEeeccccC-CCCCCccccccccCCCCCcEEE
Q 039739          111 KYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLN  142 (628)
Q Consensus       111 ~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~  142 (628)
                      ++|.|..|.- +..+-+.-...+..+++|+.||
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666655443 3311111112344455555553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.97  E-value=0.0032  Score=33.62  Aligned_cols=21  Identities=52%  Similarity=0.765  Sum_probs=13.7

Q ss_pred             CCcEEECCCCcccccccccccc
Q 039739          578 QLQLLDLSNNSLHGSIPLCLDN  599 (628)
Q Consensus       578 ~L~~L~l~~~~~~~~ip~~~~~  599 (628)
                      +|++|++++|+++ .||+.+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4567777777666 67766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.77  E-value=0.0001  Score=75.55  Aligned_cols=193  Identities=23%  Similarity=0.237  Sum_probs=87.4

Q ss_pred             CCEEeCCCCCC--CCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCC----CCceEecccccccccccCCCcccc
Q 039739            7 LNTLYLSSNNF--TDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFP----SLKNLSMIGCEVNGLVRGQGFPHF   80 (628)
Q Consensus         7 L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~~~~~~~l   80 (628)
                      +.+|.|.+|.+  ++...+...+...+.|..|++++|.+.+.....+++.++    .+++|.+..|.++....       
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~-------  161 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA-------  161 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch-------
Confidence            45556666655  233334455555666666666666666555555544322    23334444443332211       


Q ss_pred             CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccccccc----CCCCCcEEEccCCccccc----C
Q 039739           81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLC----SLVHLQVLNIAYNDLRGS----L  152 (628)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~l~~L~~L~L~~~~~~~~----~  152 (628)
                                      ..+...+.. ..+++.++++.|.+...+.......+.    ...++++|++++|.++..    .
T Consensus       162 ----------------~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  162 ----------------APLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             ----------------HHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence                            112233333 444555555544442222222222333    255556666655554421    1


Q ss_pred             chhhhcCCC-CCEEEccccccccc----cCCCCCCCC-CcccEEEcccCeeeeecC---CCCcCCCCcccEEeccCCccc
Q 039739          153 PWCLANMTS-LRILDVSSNQLTGS----ISSSPLVHL-TSIEELYLSNNHFQIPIS---LEPFFNHSRLKSFYADNNEIN  223 (628)
Q Consensus       153 ~~~l~~l~~-L~~L~l~~~~~~~~----l~~~~l~~l-~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~  223 (628)
                      ...+...++ ++.+++..|.+.+.    +.. .+..+ ..+++++++.|.++....   ...+..+++++++.+.+|.+.
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            112223333 45566655554311    111 12233 455666666666552211   123445556666666666655


Q ss_pred             c
Q 039739          224 A  224 (628)
Q Consensus       224 ~  224 (628)
                      .
T Consensus       304 ~  304 (478)
T KOG4308|consen  304 D  304 (478)
T ss_pred             c
Confidence            4

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.33  E-value=0.003  Score=54.91  Aligned_cols=85  Identities=21%  Similarity=0.267  Sum_probs=57.5

Q ss_pred             CCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCcc-ccCccceeecccchhhcCcchhhhhhccCCCc
Q 039739           32 NLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFP-HFKSLEHLDMEGALIALNTSFLQIIGESMPSL  110 (628)
Q Consensus        32 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  110 (628)
                      .++.++-+++.|..+....+.+ ++.++.|.+.+|...+.---+.+. -.++|+.|++++|+ .+.+....-+.+ +++|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~-lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLK-LKNL  178 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHH-hhhh
Confidence            4677777777777777777777 788888888777644331111222 35778888888876 566666677777 7888


Q ss_pred             cEEeecccc
Q 039739          111 KYLSLFGSI  119 (628)
Q Consensus       111 ~~L~l~~~~  119 (628)
                      +.|.+.+-.
T Consensus       179 r~L~l~~l~  187 (221)
T KOG3864|consen  179 RRLHLYDLP  187 (221)
T ss_pred             HHHHhcCch
Confidence            887776643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.02  E-value=0.01  Score=31.69  Aligned_cols=18  Identities=39%  Similarity=0.534  Sum_probs=8.3

Q ss_pred             CcEEECCCCcCCccCCccc
Q 039739          555 LSHLILGHNNLEGEVPVQL  573 (628)
Q Consensus       555 L~~L~l~~~~i~~~~~~~l  573 (628)
                      |++|++++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.36  E-value=0.027  Score=27.77  Aligned_cols=16  Identities=63%  Similarity=0.906  Sum_probs=7.2

Q ss_pred             CCcEEECCCCccccccc
Q 039739          578 QLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       578 ~L~~L~l~~~~~~~~ip  594 (628)
                      +|+.|+|++|++. ++|
T Consensus         2 ~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             T-SEEEETSS--S-SE-
T ss_pred             ccCEEECCCCCCC-CCc
Confidence            5666666666655 444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=0.0072  Score=52.66  Aligned_cols=85  Identities=16%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             CCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccC-CCCCCccccccccCC
Q 039739           57 SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL-GTNSSRILDRGLCSL  135 (628)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~l  135 (628)
                      .++.++-+++.+...... -+.+++.++.|.+.+|. .+.+.....++...++|+.|++++|.- ++.    -...+.++
T Consensus       102 ~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck-~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~----GL~~L~~l  175 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCK-YFDDWCLERLGGLAPSLQDLDLSGCPRITDG----GLACLLKL  175 (221)
T ss_pred             eEEEEecCCchHHHHHHH-HHhccchhhhheecccc-chhhHHHHHhcccccchheeeccCCCeechh----HHHHHHHh
Confidence            355666666665543221 35666777777777774 456666677777678888888888865 441    11346677


Q ss_pred             CCCcEEEccCCc
Q 039739          136 VHLQVLNIAYND  147 (628)
Q Consensus       136 ~~L~~L~L~~~~  147 (628)
                      ++|+.|.+++-.
T Consensus       176 knLr~L~l~~l~  187 (221)
T KOG3864|consen  176 KNLRRLHLYDLP  187 (221)
T ss_pred             hhhHHHHhcCch
Confidence            788887776543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.76  E-value=0.0012  Score=67.76  Aligned_cols=89  Identities=24%  Similarity=0.277  Sum_probs=42.2

Q ss_pred             CceEecccccccccccC---CCccccCccceeecccchhhcCcchhhhhhccC----CCccEEeeccccCCCCCCccccc
Q 039739           58 LKNLSMIGCEVNGLVRG---QGFPHFKSLEHLDMEGALIALNTSFLQIIGESM----PSLKYLSLFGSILGTNSSRILDR  130 (628)
Q Consensus        58 L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~  130 (628)
                      +..|.+.+|.+......   .++.....|..|+++++.  +.+.....+.+.+    ..+++|++..|.++..+.....+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~--l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN--LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC--CccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            44455555544332111   134555566666666663  2233233332222    23455555556554444333334


Q ss_pred             cccCCCCCcEEEccCCcc
Q 039739          131 GLCSLVHLQVLNIAYNDL  148 (628)
Q Consensus       131 ~l~~l~~L~~L~L~~~~~  148 (628)
                      .+.....++.++++.|.+
T Consensus       167 ~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHhcccchhHHHHHhccc
Confidence            555566666666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.67  E-value=0.14  Score=28.46  Aligned_cols=21  Identities=52%  Similarity=0.637  Sum_probs=13.7

Q ss_pred             CCCCcEEECCCCcccccccccc
Q 039739          576 LNQLQLLDLSNNSLHGSIPLCL  597 (628)
Q Consensus       576 l~~L~~L~l~~~~~~~~ip~~~  597 (628)
                      +++|++|++.+|++. .||++.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            356677777777776 566654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.67  E-value=0.14  Score=28.46  Aligned_cols=21  Identities=52%  Similarity=0.637  Sum_probs=13.7

Q ss_pred             CCCCcEEECCCCcccccccccc
Q 039739          576 LNQLQLLDLSNNSLHGSIPLCL  597 (628)
Q Consensus       576 l~~L~~L~l~~~~~~~~ip~~~  597 (628)
                      +++|++|++.+|++. .||++.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            356677777777776 566654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.33  E-value=0.059  Score=29.38  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=9.6

Q ss_pred             CCCcEEecCCCCCCCcchhHh
Q 039739           31 TNLEYLTLDSSSLHISLLQSI   51 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l   51 (628)
                      ++|++|++++|.|++..+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            455555555555554444433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.56  E-value=0.74  Score=25.51  Aligned_cols=13  Identities=38%  Similarity=0.498  Sum_probs=5.9

Q ss_pred             CCcEEECCCCcCC
Q 039739          554 QLSHLILGHNNLE  566 (628)
Q Consensus       554 ~L~~L~l~~~~i~  566 (628)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.56  E-value=0.74  Score=25.51  Aligned_cols=13  Identities=38%  Similarity=0.498  Sum_probs=5.9

Q ss_pred             CCcEEECCCCcCC
Q 039739          554 QLSHLILGHNNLE  566 (628)
Q Consensus       554 ~L~~L~l~~~~i~  566 (628)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.91  E-value=0.73  Score=25.60  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=12.5

Q ss_pred             CCCCcEEecCCC-CCCCcchhHhh
Q 039739           30 FTNLEYLTLDSS-SLHISLLQSIA   52 (628)
Q Consensus        30 ~~~L~~L~l~~~-~~~~~~~~~l~   52 (628)
                      |++|++|++++| .+++.....++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            355666666665 35555444443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.90  E-value=0.79  Score=26.06  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=14.7

Q ss_pred             CCCcEEecCCCCCCCcchhHhhc
Q 039739           31 TNLEYLTLDSSSLHISLLQSIAS   53 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~   53 (628)
                      ++|++|+|++|.+.......++.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            45677777777776655555544

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=80.91  E-value=5.3  Score=40.20  Aligned_cols=110  Identities=12%  Similarity=0.033  Sum_probs=48.8

Q ss_pred             CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCC-c-cccCccceeecccchhhcCcchhhhhhc--c
Q 039739           31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQG-F-PHFKSLEHLDMEGALIALNTSFLQIIGE--S  106 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~  106 (628)
                      +.+++++++.|.+.+..+..+..  +-.. +++..|..++...... . +.-..+++++++.+  ...+.++..+..  .
T Consensus       165 pr~r~~dls~npi~dkvpihl~~--p~~p-l~lr~c~lsskfis~l~~qsg~~~lteldls~n--~~Kddip~~~n~~a~  239 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPIHLPQ--PGNP-LSLRVCELSSKFISKLLIQSGRLWLTELDLSTN--GGKDDIPRTLNKKAG  239 (553)
T ss_pred             chhhhhccCCCcccccCCccccC--CCCc-cchhhhhhhhhHHHHhhhhhccccccccccccC--CCCccchhHHHHhhh
Confidence            34566666666666555555433  1111 4444444333211000 0 11134666777666  444444433222  1


Q ss_pred             CCCccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCc
Q 039739          107 MPSLKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYND  147 (628)
Q Consensus       107 ~~~L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~  147 (628)
                      -.-++.++.++..+ .++.++.  -....-.+++..+++.+.
T Consensus       240 ~~vl~~ld~s~tgirlD~l~~~--l~~g~~tkl~~~kls~ng  279 (553)
T KOG4242|consen  240 TLVLFKLDRSTTGIRLDLLTSP--LAAGRTTKLTFGKLSRNG  279 (553)
T ss_pred             hhhhhcccccccccchhhcccc--cccccccccchhhhccCC
Confidence            23456666666555 2211111  123444566666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	628
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-34
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-34
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-07

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 240/564 (42%), Gaps = 111/564 (19%)
Query: 79  HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHL 138
              SLE LD+    I+       ++ +    LK+L++ G+ +    S  +D   C  V+L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI----SGDVDVSRC--VNL 202
Query: 139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
           + L+++ N+    +P+ L + ++L+ LD+S N+L+G  S + +   T ++ L +S+N F 
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260
Query: 199 IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKF- 257
            PI   P      L+      N+   EI     L+     L+ L LS  +  G + P F 
Sbjct: 261 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 258 -----------------------LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
                                  L     L+ +DLS  + +GE P  L   +  L  L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 295 VNDSLGGPF--QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
            +++  GP    L  +    L  L + NN F G IP  + +    L SL++S N L G+I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 434
Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLR 412
           PSS G++  L+ L L  N L GEIP+ L+                          +  L 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-------------------------VKTLE 469
Query: 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472
            L L+ N   GEIP  LS C  L  + L+NN L+G+IP+W+G L  L  + +  N   G 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 473 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLS---------------------VEQVHL 511
           IP E      L  LD++ N  +G++P+     S                      ++ H 
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 512 SKNMLHGQLKRG-------------------------TFFNSYSLVTLDLSYNRLNGNIS 546
           + N+L  Q  R                          TF N+ S++ LD+SYN L+G I 
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 547 DWVDGLSQLSHLILGHNNLEGEVP 570
             +  +  L  L LGHN++ G +P
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIP 673

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 196/447 (43%), Gaps = 73/447 (16%)
Query: 190 LYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249
           L+LSN+H  I  S+  F   + L S     N ++  +T   SL + +  L  L++SS   
Sbjct: 82  LFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTL 138
Query: 250 DGFIFPKFL---YHQHDLEYVDLSHIKMNGE-FPTWLLENNT-KLRQLSLVNDSLGGPFQ 304
           D   FP  +      + LE +DLS   ++G     W+L +   +L+ L++  + + G   
Sbjct: 139 D---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--D 193
Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
           + +     L  LD+S+NNF   IP  +GD   +L  L+IS N L G    +      L++
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 365 LDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGE 424
           L++S+N   G IP                              L +L++L L  N F GE
Sbjct: 252 LNISSNQFVGPIPP---------------------------LPLKSLQYLSLAENKFTGE 284
Query: 425 IPQSLS-KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDW 482
           IP  LS  C  L GL L+ N   G +P + G+ + L+ + +  N+  G +P++   ++  
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 483 LQILDISDNNISGSLPS---------------------------CFHPL-SVEQVHLSKN 514
           L++LD+S N  SG LP                            C +P  ++++++L  N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVXXX 574
              G++   T  N   LV+L LS+N L+G I   +  LS+L  L L  N LEGE+P    
Sbjct: 405 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 575 XXXXXXXXXXXXXXXHGSIPLCLDNTT 601
                           G IP  L N T
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCT 490

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  141 bits (356), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 240/564 (42%), Gaps = 111/564 (19%)
Query: 79  HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHL 138
              SLE LD+    I+       ++ +    LK+L++ G+ +    S  +D   C  V+L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI----SGDVDVSRC--VNL 199
Query: 139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
           + L+++ N+    +P+ L + ++L+ LD+S N+L+G  S + +   T ++ L +S+N F 
Sbjct: 200 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 257
Query: 199 IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKF- 257
            PI   P      L+      N+   EI     L+     L+ L LS  +  G + P F 
Sbjct: 258 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 258 -----------------------LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
                                  L     L+ +DLS  + +GE P  L   +  L  L L
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 295 VNDSLGGPF--QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
            +++  GP    L  +    L  L + NN F G IP  + +    L SL++S N L G+I
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 431
Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLR 412
           PSS G++  L+ L L  N L GEIP+ L+                          +  L 
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-------------------------VKTLE 466
Query: 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472
            L L+ N   GEIP  LS C  L  + L+NN L+G+IP+W+G L  L  + +  N   G 
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 473 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLS---------------------VEQVHL 511
           IP E      L  LD++ N  +G++P+     S                      ++ H 
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 512 SKNMLHGQLKRG-------------------------TFFNSYSLVTLDLSYNRLNGNIS 546
           + N+L  Q  R                          TF N+ S++ LD+SYN L+G I 
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 547 DWVDGLSQLSHLILGHNNLEGEVP 570
             +  +  L  L LGHN++ G +P
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIP 670

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 196/447 (43%), Gaps = 73/447 (16%)
Query: 190 LYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG 249
           L+LSN+H  I  S+  F   + L S     N ++  +T   SL + +  L  L++SS   
Sbjct: 79  LFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTL 135
Query: 250 DGFIFPKFL---YHQHDLEYVDLSHIKMNGE-FPTWLLENNT-KLRQLSLVNDSLGGPFQ 304
           D   FP  +      + LE +DLS   ++G     W+L +   +L+ L++  + + G   
Sbjct: 136 D---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--D 190
Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
           + +     L  LD+S+NNF   IP  +GD   +L  L+IS N L G    +      L++
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 365 LDLSNNHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLRWLQLEGNHFVGE 424
           L++S+N   G IP                              L +L++L L  N F GE
Sbjct: 249 LNISSNQFVGPIPP---------------------------LPLKSLQYLSLAENKFTGE 281
Query: 425 IPQSLS-KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDW 482
           IP  LS  C  L GL L+ N   G +P + G+ + L+ + +  N+  G +P++   ++  
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 483 LQILDISDNNISGSLPS---------------------------CFHPL-SVEQVHLSKN 514
           L++LD+S N  SG LP                            C +P  ++++++L  N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVXXX 574
              G++   T  N   LV+L LS+N L+G I   +  LS+L  L L  N LEGE+P    
Sbjct: 402 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 575 XXXXXXXXXXXXXXXHGSIPLCLDNTT 601
                           G IP  L N T
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCT 487

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 352 IPSSFGNMKFLQILDLSN-NHLTGEIPEHLVVGCVXXXXXXXXXXXXXGHMFSRNFNLTN 410
           IPSS  N+ +L  L +   N+L G IP  +                           LT 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 411 LRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE 470
           L +L +   +  G IP  LS+   L  L  + N+LSG +P  + +L  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 471 GPIPVEFCQLDWL-QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQ---------- 519
           G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G           
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 520 ------LKRGTFFN------SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG 567
                  K    F+      S +L  LDL  NR+ G +   +  L  L  L +  NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 568 EVP 570
           E+P
Sbjct: 283 EIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 425 IPQSLSKCFVLEGLFLNN-NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
           IP SL+    L  L++   N+L G IP  +  LT+L ++ +   ++ G IP    Q+  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 484 QILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
             LD S N +SG+LP     L ++  +    N + G +       S    ++ +S NRL 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPV 571
           G I      L+ L+ + L  N LEG+  V
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASV 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	628
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-111
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-102
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  349 bits (898), Expect = e-111
 Identities = 159/599 (26%), Positives = 257/599 (42%), Gaps = 29/599 (4%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLH--ISLLQSIASIFPSLK 59
            S   L +L+LS+++      +        +L  L L  +SL   ++ L S+ S    LK
Sbjct: 74  LSLTGLESLFLSNSHING---SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLK 129

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
            L++    ++   +  G     SLE LD+    I+       ++ +    LK+L++ G+ 
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
           +   S  +    +   V+L+ L+++ N+    +P+ L + ++L+ LD+S N+L+G  S +
Sbjct: 190 I---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 242

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
            +   T ++ L +S+N F  PI   P      L+      N+   EI    S       L
Sbjct: 243 -ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDT--L 296

Query: 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
           + L LS  +  G + P F      LE + LS    +GE P   L     L+ L L  +  
Sbjct: 297 TGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 300 GGPFQLPIHS-HKRLGMLDISNNNFRGHIPVEIGDV-LPSLFSLNISMNALDGSIPSSFG 357
            G     + +    L  LD+S+NNF G I   +      +L  L +  N   G IP +  
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 358 NMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417
           N   L  L LS N+L+G IP  L      L  L L  N LEG +      +  L  L L+
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 477
            N   GEIP  LS C  L  + L+NN L+G+IP+W+G L  L  + +  N   G IP E 
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 478 CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537
                L  LD++ N  +G++P+     S +   ++ N + G+       N         +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGK---IAANFIAGKR-YVYIKNDGMKKECHGA 590

Query: 538 YN--RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
            N     G  S+ ++ LS  +   +      G           +  LD+S N L G IP
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  326 bits (837), Expect = e-102
 Identities = 175/636 (27%), Positives = 265/636 (41%), Gaps = 46/636 (7%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
               SL +L LS N+ +   T    L + + L++L + S++L      S      SL+ L
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 62  SMIGCEVNG--LVRGQGFPHFKSLEHLDMEG-------------ALIALNTSFLQIIGE- 105
            +    ++G  +V          L+HL + G              L  L+ S        
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216

Query: 106 ----SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTS 161
                  +L++L + G+ L    S    R + +   L++LNI+ N   G +P     + S
Sbjct: 217 PFLGDCSALQHLDISGNKL----SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKS 270

Query: 162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNE 221
           L+ L ++ N+ TG I         ++  L LS NHF   +    F + S L+S    +N 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNN 329

Query: 222 INAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTW 281
            + E+     L      L  L LS     G +          L  +DLS    +G     
Sbjct: 330 FSGELPMDTLLKMRG--LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 282 LLENN-TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFS 340
           L +N    L++L L N+   G     + +   L  L +S N   G IP  +G  L  L  
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRD 446

Query: 341 LNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH 400
           L + +N L+G IP     +K L+ L L  N LTGEIP  L   C NL  ++LSNN L G 
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGE 505

Query: 401 MFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
              +    L NL  L+L  N F G IP  L  C  L  L LN N  +G IP  +   +  
Sbjct: 506 -IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG- 563

Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDN--NISGSLPSCFHPLS-VEQVHLSKNML 516
               +  N + G   V        +    + N     G      + LS     +++  + 
Sbjct: 564 ---KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 517 HGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL 576
            G     TF N+ S++ LD+SYN L+G I   +  +  L  L LGHN++ G +P ++  L
Sbjct: 621 GGHTSP-TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 577 NQLQLLDLSNNSLHGSIPLCLDN----TTLHESYNN 608
             L +LDLS+N L G IP  +      T +  S NN
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  319 bits (819), Expect = 3e-99
 Identities = 143/613 (23%), Positives = 250/613 (40%), Gaps = 100/613 (16%)

Query: 6   SLNTLYLSSNNFT-DIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
            + ++ LSS       +  +  L + T LE L L +S ++ S+           K  +  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--------SGFKCSA-- 100

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
                            SL  LD+    ++   + L  +G S   LK+L++  + L    
Sbjct: 101 -----------------SLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTL---D 139

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLA---NMTSLRILDVSSNQLTGSISSSPL 181
                 G   L  L+VL+++ N + G+             L+ L +S N+++G +    +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DV 196

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241
               ++E L +S+N+F   I      + S L+      N+++ +                
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDF--------------- 239

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 301
                         + +    +L+ +++S  +  G  P   L++                
Sbjct: 240 -------------SRAISTCTELKLLNISSNQFVGPIPPLPLKS---------------- 270

Query: 302 PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKF 361
                      L  L ++ N F G IP  +     +L  L++S N   G++P  FG+   
Sbjct: 271 -----------LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLT-NLRWLQLEGNH 420
           L+ L LS+N+ +GE+P   ++    L+ L LS N   G +     NL+ +L  L L  N+
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 421 FVGEIPQSLSKCF--VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 478
           F G I  +L +     L+ L+L NN  +GKIP  L N + L  + +  N+L G IP    
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 479 QLDWLQILDISDNNISGSLPSCFHPLSV-EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537
            L  L+ L +  N + G +P     +   E + L  N L G++      N  +L  + LS
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLS 498

Query: 538 YNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL 597
            NRL G I  W+  L  L+ L L +N+  G +P +L     L  LDL+ N  +G+IP  +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 598 DNTTLHESYNNSS 610
              +   + N  +
Sbjct: 559 FKQSGKIAANFIA 571

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  289 bits (742), Expect = 3e-88
 Identities = 129/479 (26%), Positives = 213/479 (44%), Gaps = 49/479 (10%)

Query: 133 CSLVHLQVLNIAYNDLR---GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 189
           C    +  ++++   L     ++   L ++T L  L +S++ + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 190 LYLSNNHFQIPISLEP-FFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGY 248
           L LS N    P++      + S LK     +N ++     S  L   +            
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS------------ 152

Query: 249 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLGGPFQLP 306
                          LE +DLS   ++G      + ++   +L+ L++  + + G   + 
Sbjct: 153 ---------------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VD 195

Query: 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366
           +     L  LD+S+NNF   IP  +GD   +L  L+IS N L G    +      L++L+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 367 LSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHM-FSRNFNLTNLRWLQLEGNHFVGEI 425
           +S+N   G IP        +L+ L+L+ N   G +    +     L  L L GNHF G +
Sbjct: 254 ISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 426 PQSLSKCFVLEGLFLNNNSLSGKIPR-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW-L 483
           P     C +LE L L++N+ SG++P   L  +  L+ + +  N   G +P     L   L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 484 QILDISDNNISGSLPSCF---HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR 540
             LD+S NN SG +          ++++++L  N   G++   T  N   LV+L LS+N 
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNY 429

Query: 541 LNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599
           L+G I   +  LS+L  L L  N LEGE+P +L  +  L+ L L  N L G IP  L N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  215 bits (549), Expect = 1e-60
 Identities = 122/551 (22%), Positives = 206/551 (37%), Gaps = 79/551 (14%)

Query: 1   MGSFPSLNTLYLSSNNFT-DIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLK 59
           + +   L  L +SSN F   I           +L+YL+L  +     +   ++    +L 
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFG-S 118
            L + G    G V    F     LE L +       +          M  LK L L    
Sbjct: 298 GLDLSGNHFYGAV-PPFFGSCSLLESLALSSNN--FSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP--WCLANMTSLRILDVSSNQLTGSI 176
             G     + +        L  L+++ N+  G +    C     +L+ L + +N  TG I
Sbjct: 355 FSGELPESLTN----LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
             + L + + +  L+LS N+    I      + S+L+      N +  EI          
Sbjct: 411 PPT-LSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEI---------- 458

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
                             P+ L +   LE + L    + GE P+ L  N T L  +SL N
Sbjct: 459 ------------------PQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSN 499

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSF 356
           + L G     I   + L +L +SNN+F G+IP E+GD   SL  L+++ N  +G+IP++ 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAM 558

Query: 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN--SLEGHMFSRNFNLTNLRWL 414
                     ++ N + G+   ++       +    + N    +G    +   L+     
Sbjct: 559 FKQS----GKIAANFIAGKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP 474
            +    + G    +      +  L ++ N LSG IP+ +G++  L  + +  N + G IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

Query: 475 VEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534
            E   L  L ILD+S N + G +P                                L  +
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQ------------------------AMSALTMLTEI 709

Query: 535 DLSYNRLNGNI 545
           DLS N L+G I
Sbjct: 710 DLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  189 bits (482), Expect = 1e-51
 Identities = 112/474 (23%), Positives = 182/474 (38%), Gaps = 43/474 (9%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
              SL  L L+ N FT              L  L L  +  + ++     S    L++L+
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLA 324

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLF-----G 117
           +     +G +        + L+ LD+       +    + +     SL  L L      G
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNE--FSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 118 SI---LGTNSSRILD--------------RGLCSLVHLQVLNIAYNDLRGSLPWCLANMT 160
            I   L  N    L                 L +   L  L++++N L G++P  L +++
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ--IPISLEPFFNHSRLKSFYAD 218
            LR L +  N L G I    L+++ ++E L L  N     IP  L    N + L      
Sbjct: 443 KLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGL---SNCTNLNWISLS 498

Query: 219 NNEINAEITQS-HSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 277
           NN +  EI +    L      L+ L LS+    G I P  L     L ++DL+    NG 
Sbjct: 499 NNRLTGEIPKWIGRLE----NLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGT 553

Query: 278 FPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS 337
            P  + + + K+    +          +     K+      +   F+G    ++   L +
Sbjct: 554 IPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LST 609

Query: 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397
               NI+     G    +F N   +  LD+S N L+G IP+ +      L  L L +N +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDI 668

Query: 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPR 451
            G +     +L  L  L L  N   G IPQ++S   +L  + L+NN+LSG IP 
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  159 bits (405), Expect = 2e-41
 Identities = 104/471 (22%), Positives = 169/471 (35%), Gaps = 106/471 (22%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
           GS   L +L LSSNNF+        L     L+ L L  +     L +S+ ++  SL  L
Sbjct: 315 GSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 62  SMIGCEVNGLV-RGQGFPHFKSLEHLDMEG---------------ALIALNTSFLQIIGE 105
            +     +G +          +L+ L ++                 L++L+ SF  + G 
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 106 ------SMPSLKYLSLF-----GSI---LGTNSS-RILD-----------RGLCSLVHLQ 139
                 S+  L+ L L+     G I   L    +   L             GL +  +L 
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 140 VLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF-- 197
            ++++ N L G +P  +  + +L IL +S+N  +G+I +  L    S+  L L+ N F  
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 552

Query: 198 QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKF 257
            IP ++   F  S   +      +    I         +   + L          I  + 
Sbjct: 553 TIPAAM---FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG------IRSEQ 603

Query: 258 LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD 317
           L         +++     G               +                       LD
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTF----DNNGSMMF---------------------LD 638

Query: 318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 377
           +S N   G+IP EIG  +P LF LN+  N + GSIP   G+++ L ILDLS+N L G IP
Sbjct: 639 MSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 378 EHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428
           + +                           LT L  + L  N+  G IP+ 
Sbjct: 698 QAMS-------------------------ALTMLTEIDLSNNNLSGPIPEM 723

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  228 bits (583), Expect = 4e-66
 Identities = 119/630 (18%), Positives = 210/630 (33%), Gaps = 54/630 (8%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
               ++  L L+ N    +  A      ++ L  L +  +++     +      P LK L
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVL 78

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
           ++   E++ L     F    +L  L +    I               +L  L L  + L 
Sbjct: 79  NLQHNELSQLSDKT-FAFCTNLTELHLMSNSI---QKIKNNPFVKQKNLITLDLSHNGL- 133

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANM--TSLRILDVSSNQLTGSISSS 179
              S         L +LQ L ++ N ++      L     +SL+ L++SSNQ+       
Sbjct: 134 ---SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 180 PLVHLTSIEELYLSNNHF--QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF 237
               +  +  L+L+N      +   L     ++ +++    N++++   + +  L     
Sbjct: 191 -FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWT 248

Query: 238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVND 297
            L+ L LS    +             LEY  L +  +   F    L     +R L+L   
Sbjct: 249 NLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNL--- 303

Query: 298 SLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG 357
                        +      IS  +            L  L  LN+  N + G   + F 
Sbjct: 304 ------------KRSFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFT 350

Query: 358 NMKFLQILDLSNNHLT-GEIPEHLVVGCVN--LESLALSNNSLEGHMFSRNFNLTNLRWL 414
            +  L+ L LSN+  +   +     V   +  L  L L+ N +          L +L  L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 415 QLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-- 471
            L  N    E+  Q       +  ++L+ N            +  LQ +M+ +  L+   
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLH-------GQLKRG 523
             P  F  L  L ILD+S+NNI+         L  +E + L  N L              
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530

Query: 524 TFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD 583
                  L  L+L  N  +    +    L +L  + LG NNL             L+ L+
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 584 LSNNSLHGSIPLCLDNTTLHESYNNSSSLD 613
           L  N +               ++ N + LD
Sbjct: 591 LQKNLITSVEK-----KVFGPAFRNLTELD 615

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (470), Expect = 2e-50
 Identities = 104/479 (21%), Positives = 170/479 (35%), Gaps = 35/479 (7%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
            S  + D S  +LT      P    T+I  L L++N  +   +   F  +S+L S     
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGF 58

Query: 220 NEINAEITQS-HSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 278
           N I+    +    L      L  L+L           K      +L  + L    +    
Sbjct: 59  NTISKLEPELCQKLP----MLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIK 113

Query: 279 PTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDV-LPS 337
                     L  L L ++ L           + L  L +SNN  +     E+      S
Sbjct: 114 NN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN--LESLALSNN 395
           L  L +S N +    P  F  +  L  L L+N  L   + E L +   N  + +L+LSN+
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 396 SLEG--HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWL 453
            L    +        TNL  L L  N+       S +    LE  FL  N++       L
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 454 GNLTRLQHIMMPKN---------HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL 504
             L  ++++ + ++          L       F  L  L+ L++ DN+I G   + F  L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 505 -SVEQVHLSKNMLHGQ-LKRGTFFN--SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLIL 560
            +++ + LS +    + L   TF +     L  L+L+ N+++   SD    L  L  L L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 561 GHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLHGSIPLCLDN----TTLHESYNNSSSLDK 614
           G N +  E+  Q    L  +  + LS N                  L        ++D 
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 62/311 (19%), Positives = 115/311 (36%), Gaps = 31/311 (9%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIA-SIFPSLK 59
                +L  L LS++  +      +   +  +     L+ +   IS ++S A S    L+
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGES---MPSLKYLSLF 116
            L +   E+   + GQ +   +++  + +          +LQ+   S   +PSL+ L L 
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLS------YNKYLQLTRNSFALVPSLQRLMLR 462

Query: 117 G-SILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLT-- 173
             ++   +SS         L +L +L+++ N++       L  +  L ILD+  N L   
Sbjct: 463 RVALKNVDSS---PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 174 -----GSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQ 228
                       L  L+ +  L L +N F   I +E F +   LK      N +N     
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLP-- 576

Query: 229 SHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH------IKMNGEFPTWL 282
             S+      L  L+L            F     +L  +D+         +    F  W+
Sbjct: 577 -ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

Query: 283 LENNTKLRQLS 293
            E +T + +LS
Sbjct: 636 NETHTNIPELS 646

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  207 bits (529), Expect = 5e-59
 Identities = 107/577 (18%), Positives = 199/577 (34%), Gaps = 51/577 (8%)

Query: 32  NLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGA 91
            +  +T     L  +  +   ++  S KNL +    +  L     F  F  L+ LD+   
Sbjct: 6   VVPNITYQCMEL--NFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS-- 60

Query: 92  LIALNTSFLQIIGES---MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDL 148
                     I   +   +  L  L L G+ +      +       L  LQ L     +L
Sbjct: 61  ----RCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNL 112

Query: 149 RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFN 208
                + + ++ +L+ L+V+ N +          +LT++E L LS+N  Q          
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRV 171

Query: 209 HSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVD 268
             ++       +     +           +L +L+L + +    +    +     LE   
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 269 LSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGH 326
           L   +   E      + +    L  L++                       ++  ++   
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEE-------------------FRLAYLDYYLD 272

Query: 327 IPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN 386
             +++ + L ++ S ++    ++     S+      Q L+L N          L     +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK----S 326

Query: 387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH--FVGEIPQSLSKCFVLEGLFLNNNS 444
           L+ L  ++N           +L +L +L L  N   F G   QS      L+ L L+ N 
Sbjct: 327 LKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 445 LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHP 503
           +   +      L +L+H+    ++L+       F  L  L  LDIS  +   +    F+ 
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 504 L-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562
           L S+E + ++ N          F    +L  LDLS  +L        + LS L  L + H
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 563 NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599
           NN           LN LQ+LD S N +  S    L +
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (491), Expect = 8e-54
 Identities = 112/591 (18%), Positives = 192/591 (32%), Gaps = 69/591 (11%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
            SFP L  L LS      I        + ++L  L L  + +           F  L + 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQ----SLALGAFSGLSS- 101

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGES---MPSLKYLSLFGS 118
                                L+ L          T+   +       + +LK L++  +
Sbjct: 102 ---------------------LQKLVAV------ETNLASLENFPIGHLKTLKELNVAHN 134

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRI----LDVSSNQLTG 174
           ++    S  L     +L +L+ L+++ N ++      L  +  + +    LD+S N +  
Sbjct: 135 LI---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 175 SISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-----AEITQS 229
               +       + +L L NN   + +        + L+       E        +  +S
Sbjct: 192 IQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 230 HSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 289
                 N  +    L+                 ++    L  + +           N   
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGW 306

Query: 290 RQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD 349
           + L LVN   G    L + S KRL        N    +       LPSL  L++S N L 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGLS 360

Query: 350 --GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF- 406
             G    S      L+ LDLS N +       L  G   LE L   +++L+       F 
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKI-PRWLGNLTRLQHIMMP 465
           +L NL +L +   H         +    LE L +  NS      P     L  L  + + 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 466 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGT 524
           +  LE   P  F  L  LQ+L++S NN        +  L S++ +  S N +    K+  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 525 FFNSYSLVTLDLSYNRLNGNIS--DWVDGLSQLSHLILGHNNLEGEVPVQL 573
                SL  L+L+ N          ++  +     L++    +E   P   
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (478), Expect = 5e-52
 Identities = 90/480 (18%), Positives = 169/480 (35%), Gaps = 29/480 (6%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
             + L++++N LR    +   +   L++LD+S  ++      +    L+ +  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNP 87

Query: 197 FQIPISLEPFFNHSRLKSFYADNNEINAEITQS-HSLTAPNFQLSRLSLSSGYGDGFIFP 255
            Q  ++L  F   S L+   A    + +        L      L  L+++      F  P
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNLIQSFKLP 142

Query: 256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHS---HKR 312
           ++  +  +LE++DLS  K+   + T L     ++  L+L  D    P            R
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS------IPSSFGNMKFLQI-- 364
           L  L + NN    ++       L  L    + +              S+   +  L I  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE 424
             L+      +    L     N+ S +L + ++E             + L+L    F   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQF 319

Query: 425 IPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL--EGPIPVEFCQLDW 482
               L          L   S  G       +L  L+ + + +N L  +G           
Sbjct: 320 PTLKLKSL-----KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 483 LQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
           L+ LD+S N +     +      +E +    + L    +   F +  +L+ LD+S+    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601
              +   +GLS L  L +  N+ +    P    +L  L  LDLS   L    P   ++ +
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (382), Expect = 6e-39
 Identities = 87/510 (17%), Positives = 157/510 (30%), Gaps = 79/510 (15%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +G   +L  L ++ N         +   N TNLE+L L S+ +         +    L  
Sbjct: 120 IGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQ----SIYCTDLRVLHQ 174

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           + ++   ++                                                  L
Sbjct: 175 MPLLNLSLD--------------------------------------------------L 184

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSS 179
             N    +  G    + L  L +  N    ++   C+  +  L +  +   +     +  
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 180 PLVHLT-------SIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSL 232
                        +IEE  L+   + +   ++ F   + + SF   +  I      S+  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-- 302

Query: 233 TAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQL 292
              NF    L L +     F   K       L+ +  +  K    F    L +   L  L
Sbjct: 303 ---NFGWQHLELVNCKFGQFPTLKLK----SLKRLTFTSNKGGNAFSEVDLPSLEFLD-L 354

Query: 293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
           S    S  G           L  LD+S N         +G  L  L  L+   + L    
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMS 412

Query: 353 PSS-FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTN 410
             S F +++ L  LD+S+ H           G  +LE L ++ NS + +     F  L N
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 411 LRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE 470
           L +L L         P + +    L+ L +++N+           L  LQ +    NH+ 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 471 GPIPVEFCQL-DWLQILDISDNNISGSLPS 499
                E       L  L+++ N+ + +   
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  138 bits (350), Expect = 8e-35
 Identities = 73/465 (15%), Positives = 153/465 (32%), Gaps = 26/465 (5%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEY--LTLDSSSLHISLLQSIASIFPSL 58
             +  +L  L LSSN    I     +L     +    L+LD S   ++ +Q  A     L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 59  KNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGS 118
             L++     +  V          LE   +         +  +    ++  L  L++   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 119 ILGTN--SSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
            L         +      L ++   ++    +        +     + L++ + +     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQF- 319

Query: 177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
              P + L S++ L  ++N      S     +   L+      N ++             
Sbjct: 320 ---PTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLS-FKGCCSQSDFGT 372

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L  L LS       +   FL  +  LE++D  H  +       +  +   L  L + +
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSF 356
                 F    +    L +L ++ N+F+ +   +I   L +L  L++S   L+   P++F
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG---HMFSRNFNLTNLRW 413
            ++  LQ+L++S+N+              +L+ L  S N +              ++L +
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAF 547

Query: 414 LQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSLSGKIPRWLGNL 456
           L L  N F           ++     L +    +    P     +
Sbjct: 548 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  196 bits (502), Expect = 4e-58
 Identities = 77/283 (27%), Positives = 120/283 (42%), Gaps = 32/283 (11%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS--IPSSFGNMKFLQILDLSN-NHL 372
            D  N  + G +          + +L++S   L     IPSS  N+ +L  L +   N+L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 373 TGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKC 432
            G IP  +                           LT L +L +   +  G IP  LS+ 
Sbjct: 90  VGPIPPAI-------------------------AKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL-QILDISDN 491
             L  L  + N+LSG +P  + +L  L  I    N + G IP  +     L   + IS N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 492 NISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG 551
            ++G +P  F  L++  V LS+NML G      F +  +   + L+ N L  ++   V  
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGL 242

Query: 552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
              L+ L L +N + G +P  L +L  L  L++S N+L G IP
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  172 bits (438), Expect = 6e-49
 Identities = 69/278 (24%), Positives = 116/278 (41%), Gaps = 37/278 (13%)

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IPEHLVVGCVNLESLALSNNSL 397
           + +       G +  +      +  LDLS  +L     IP  L                 
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL----------------- 72

Query: 398 EGHMFSRNFNLTNLRWLQLEG-NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNL 456
                    NL  L +L + G N+ VG IP +++K   L  L++ + ++SG IP +L  +
Sbjct: 73  --------ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 457 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS--VEQVHLSKN 514
             L  +    N L G +P     L  L  +    N ISG++P  +   S     + +S+N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC 574
            L G++     F + +L  +DLS N L G+ S           + L  N+L  ++  ++ 
Sbjct: 185 RLTGKIPPT--FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241

Query: 575 KLNQLQLLDLSNNSLHGSIPLCLDN----TTLHESYNN 608
               L  LDL NN ++G++P  L       +L+ S+NN
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (365), Expect = 9e-39
 Identities = 72/361 (19%), Positives = 114/361 (31%), Gaps = 90/361 (24%)

Query: 146 NDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV-HLTSIEELYLSN-NHF--QIPI 201
               G L         +  LD+S   L         + +L  +  LY+   N+    IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 202 SLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQ 261
           ++                                  +L++L                   
Sbjct: 96  AI---------------------------------AKLTQL------------------- 103

Query: 262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNN 321
               Y+ ++H  ++G  P + L     L  L    ++L G     I S   L  +    N
Sbjct: 104 ---HYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 322 NFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLV 381
              G IP   G       S+ IS N L G IP +F N+  L  +DLS N L G+      
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF- 217

Query: 382 VGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN 441
                                    +  N + + L  N    ++   +     L GL L 
Sbjct: 218 ------------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI--SGSLPS 499
           NN + G +P+ L  L  L  + +  N+L G IP     L    +   ++N       LP+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPA 311

Query: 500 C 500
           C
Sbjct: 312 C 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (357), Expect = 1e-37
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE--IPQSLSKCFVLEGLFL-NNNS 444
            +    N +  G +   +     +  L L G +      IP SL+    L  L++   N+
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 445 LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL 504
           L G IP  +  LT+L ++ +   ++ G IP    Q+  L  LD S N +SG+LP     L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 505 -SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563
            ++  +    N + G +       S    ++ +S NRL G I      L+ L+ + L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207

Query: 564 NLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
            LEG+  V        Q + L+ NSL   + 
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (328), Expect = 1e-33
 Identities = 60/270 (22%), Positives = 108/270 (40%), Gaps = 44/270 (16%)

Query: 132 LCSLVHLQVLNIA-YNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
           L +L +L  L I   N+L G +P  +A +T L  L ++   ++G+I    L  + ++  L
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTL 130

Query: 191 YLSNNHF--QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN--FQLSRLSLSS 246
             S N     +P S+    +   L     D N I+  I        P+     S+L    
Sbjct: 131 DFSYNALSGTLPPSI---SSLPNLVGITFDGNRISGAI--------PDSYGSFSKL---- 175

Query: 247 GYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLP 306
                               + +S  ++ G+ P      N  L  + L  + L G   + 
Sbjct: 176 -----------------FTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVL 216

Query: 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366
             S K    + ++ N+    +  ++G    +L  L++  N + G++P     +KFL  L+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 367 LSNNHLTGEIPEHLVVGCVNLESLALSNNS 396
           +S N+L GEIP+         +  A +NN 
Sbjct: 275 VSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  100 bits (252), Expect = 1e-23
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 36/197 (18%)

Query: 424 EIPQSLSKCFVL----EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG--PIPVEF 477
           +I + L     L          N +  G +        R+ ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 478 CQLDWLQILDISD-NNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
             L +L  L I   NN+ G +P                    +L +        L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAI----------------AKLTQ--------LHYLYI 108

Query: 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC 596
           ++  ++G I D++  +  L  L   +N L G +P  +  L  L  +    N + G+IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 597 LDN-----TTLHESYNN 608
             +     T++  S N 
Sbjct: 169 YGSFSKLFTSMTISRNR 185

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 8e-10
 Identities = 46/245 (18%), Positives = 83/245 (33%), Gaps = 46/245 (18%)

Query: 2   GSFPSLNTLYLSSNNFT-DIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
                L+ LY++  N +  I      L     L  L    ++L  +L  SI+    SL N
Sbjct: 98  AKLTQLHYLYITHTNVSGAI---PDFLSQIKTLVTLDFSYNALSGTLPPSIS----SLPN 150

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           L  I  + N +  G     + S   L       ++  S  ++ G+  P+   L+      
Sbjct: 151 LVGITFDGNRIS-GAIPDSYGSFSKL-----FTSMTISRNRLTGKIPPTFANLN------ 198

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
                            L  ++++ N L G       +  + + + ++ N L   +    
Sbjct: 199 -----------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-- 239

Query: 181 LVHLTSIEELYLSNNHF--QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQ 238
           +    ++  L L NN     +P  L        L S     N +  EI Q  +L    F 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEIPQGGNLQ--RFD 294

Query: 239 LSRLS 243
           +S  +
Sbjct: 295 VSAYA 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (513), Expect = 7e-57
 Identities = 102/534 (19%), Positives = 186/534 (34%), Gaps = 30/534 (5%)

Query: 80  FKSLEHLDMEGALIA--LNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVH 137
             S E L+    ++    NT+F       + +L +L L    +      I +    S   
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-----SRLINLTFLDLTRCQI----YWIHEDTFQSQHR 82

Query: 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF 197
           L  L +  N L       L+   +L+ L      ++ SI   PL +  ++E LYL +NH 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHI 141

Query: 198 QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKF 257
              I L   F   +LK     NN I+     S    +   Q + LSL+    D       
Sbjct: 142 SS-IKLPKGFPTEKLKVLDFQNNAIH---YLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 258 LYHQHDLEYVDLSHIKMNGEFPTWLLENN-TKLRQLSLVNDSLGGPFQLPIHSHKRLGM- 315
            +     + ++    +        L  +    L   +  +                + + 
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 316 -LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTG 374
            +++  + F   I          L  L+++   L   +PS    +  L+ L LS N    
Sbjct: 258 SINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN 315

Query: 375 EIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNH--FVGEIPQSLSK 431
            + +       +L  L++  N+    + +    NL NLR L L  +           L  
Sbjct: 316 -LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDWLQILDISD 490
              L+ L L+ N              +L+ + +    L+       F  L  L++L++S 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 491 NNISGSLPSCFHPL-SVEQVHLSKNMLHG--QLKRGTFFNSYSLVTLDLSYNRLNGNISD 547
           + +  S    F  L +++ ++L  N        K  +      L  L LS+  L+     
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 548 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT 601
               L  ++H+ L HN L       L  L  +  L+L++N +   +P  L   +
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (509), Expect = 2e-56
 Identities = 105/558 (18%), Positives = 185/558 (33%), Gaps = 35/558 (6%)

Query: 52  ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGE----SM 107
            ++  S + L      +  +     F    +L  LD       L    +  I E    S 
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLD-------LTRCQIYWIHEDTFQSQ 80

Query: 108 PSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDV 167
             L  L L  + L      + +  L     L+ L      +       L N  +L  L +
Sbjct: 81  HRLDTLVLTANPL----IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 168 SSNQLTGSISSSPLVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNNEINAEI 226
            SN ++ SI          ++ L   NN    +          +   S   + N+I    
Sbjct: 137 GSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI---- 191

Query: 227 TQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQ-HDLEYVDLSHIKMNGEFPTWLLEN 285
                    +     L+         IF          L       +      P      
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 286 -NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNIS 344
               +  ++L             H    L  LD++  +    +P  +   L +L  L +S
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLS 309

Query: 345 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSR 404
            N  +     S  N   L  L +  N    E+    +    NL  L LS++ +E      
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 405 N--FNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPR-WLGNLTRLQH 461
               NL++L+ L L  N  +    ++  +C  LE L L    L  K  +    NL  L+ 
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 462 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL----SVEQVHLSKNMLH 517
           + +  + L+      F  L  LQ L++  N+         + L     +E + LS   L 
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 518 GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 577
             + +  F +   +  +DLS+NRL  +  + +  L  + +L L  N++   +P  L  L+
Sbjct: 490 S-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547

Query: 578 QLQLLDLSNNSLHGSIPL 595
           Q + ++L  N L  +   
Sbjct: 548 QQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  164 bits (417), Expect = 1e-43
 Identities = 106/600 (17%), Positives = 183/600 (30%), Gaps = 86/600 (14%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
            S   L+TL L++N    +A     L     L++L    + +             + K L
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETA--LSGPKALKHLFFIQTGIS----SIDFIPLHNQKTL 131

Query: 62  SMIGCEVNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
             +    N +  ++       + L+ LD +      N +   +  E M SL+  +     
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQ------NNAIHYLSKEDMSSLQQATNLSLN 185

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLAN--MTSLRILDVSSNQLTGSIS 177
           L  N    ++ G       Q LN         +   L N  + SL +             
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 178 SS-PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
           +    +   S+E + L  ++F   IS   F   S L+        ++             
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSE------------ 292

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
                             P  L     L+ + LS  K           N   L  LS+  
Sbjct: 293 -----------------LPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSI-- 332

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS--IPS 354
                                   N  R  +     + L +L  L++S + ++ S     
Sbjct: 333 ----------------------KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRW 413
              N+  LQ L+LS N     +       C  LE L L+   L+       F NL  L+ 
Sbjct: 371 QLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 414 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKI---PRWLGNLTRLQHIMMPKNHLE 470
           L L  +       Q       L+ L L  N            L  L RL+ +++    L 
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 471 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYS 530
                 F  L  +  +D+S N ++ S       L    ++L+ N +   +          
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQ 548

Query: 531 LVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCK-LNQLQLLDLSNNSL 589
             T++L  N L+   S               +     +    LC+    L+ + LS+ +L
Sbjct: 549 QRTINLRQNPLDCTCS-----NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (329), Expect = 5e-32
 Identities = 53/283 (18%), Positives = 91/283 (32%), Gaps = 16/283 (5%)

Query: 315 MLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTG 374
             +  N      IP   G +  S   L  S N L     ++F  +  L  LDL+   +  
Sbjct: 16  TYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 375 EIPEHLVVGCVNLESLALSNNSLEG---HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK 431
            I E        L++L L+ N L        S       L+ L              L  
Sbjct: 72  -IHEDTFQSQHRLDTLVLTANPLIFMAETALS---GPKALKHLFFIQTGISSIDFIPLHN 127

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI--LDIS 489
              LE L+L +N +S           +L+ +    N +      +   L       L+++
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 490 DNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSY-SLVTLDLSYNRLNGNISDW 548
            N+I+G  P  F     + ++         + +G   ++  SL                 
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 549 VDGLSQLS--HLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            +GL ++S   + L  +             + LQ LDL+   L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (280), Expect = 5e-26
 Identities = 75/447 (16%), Positives = 152/447 (34%), Gaps = 71/447 (15%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +  SL        +  DI+ A  E     ++E + L             ++ F     L 
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF----NISSNTFHCFSGLQ 281

Query: 63  MIGCEVNGLVR-GQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
            +      L     G     +L+ L +         +  QI   + PSL +LS+ G+   
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKR 338

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGS--LPWCLANMTSLRILDVSSNQLTGSISSS 179
                +    L +L +L+ L+++++D+  S      L N++ L+ L++S N+   S+ + 
Sbjct: 339 LE---LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTE 394

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
                  +E L L+    ++  +  PF N   LK     ++ ++                
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD---------------- 438

Query: 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
                           +       L++++L                          N   
Sbjct: 439 ------------ISSEQLFDGLPALQHLNLQGN------------------HFPKGNIQK 468

Query: 300 GGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNM 359
               Q    +  RL +L +S  +    I       L  +  +++S N L  S   +  ++
Sbjct: 469 TNSLQ----TLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523

Query: 360 KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN 419
           K +  L+L++NH++  I   L+       ++ L  N L+    +  F    L W +    
Sbjct: 524 KGIY-LNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTCSNIYF----LEWYKENMQ 577

Query: 420 HFVGEIPQSLSKCFVLEGLFLNNNSLS 446
                         +L G+ L++ +LS
Sbjct: 578 KLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (275), Expect = 3e-25
 Identities = 46/265 (17%), Positives = 82/265 (30%), Gaps = 23/265 (8%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG---HMFSRNFNLTNLRWLQLEGN 419
           +  +  N  L  EIP  L     + E L  S N L       FS    L NL +L L   
Sbjct: 15  KTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFS---RLINLTFLDLTRC 67

Query: 420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479
                   +      L+ L L  N L       L     L+H+   +  +     +    
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 480 LDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSL--VTLDL 536
              L+ L +  N+IS        P   ++ +    N +H  L +    +      ++L+L
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNL 186

Query: 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQL--CKLNQLQLLDLSNNSLHGSIP 594
           + N + G I       +    L  G       +   L    +  L L    +       P
Sbjct: 187 NGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 595 LCLDN------TTLHESYNNSSSLD 613
              +        +++   +   ++ 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNIS 270

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 55/303 (18%), Positives = 108/303 (35%), Gaps = 26/303 (8%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +    +L  L LS+N F ++   +    NF +L +L++  ++  + L         +L+ 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 61  LSMIGCEVNGL-VRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGS 118
           L +   ++           +   L+ L++     ++L T   +      P L+ L L  +
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK----ECPQLELLDLAFT 410

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
            L    ++       +L  L+VLN++++ L  S       + +L+ L++  N        
Sbjct: 411 RLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 179 SP--LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQS-HSLTAP 235
               L  L  +E L LS       I    F +   +      +N + +   ++   L   
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKM-----NGEFPTWLLENNTKLR 290
              L+   +S       I P  L        ++L    +     N  F  W  EN  KL 
Sbjct: 527 YLNLASNHISI------ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLE 580

Query: 291 QLS 293
              
Sbjct: 581 DTE 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  194 bits (495), Expect = 4e-53
 Identities = 88/522 (16%), Positives = 174/522 (33%), Gaps = 52/522 (9%)

Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
           L +   +  L++A    +G +P  +  +T L++L   ++  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNNEINA--EITQSHSLTAPNFQLSRLSLSSGYG 249
              +  ++           RL       + IN   E+      +  + + +++   +   
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHS 309
                 K +     L+ +  ++     +               +          +L   +
Sbjct: 438 TF--ISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSN 489

Query: 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDG---------SIPSSFGNMK 360
            K L  +++ N      +P  + D LP L SLNI+ N              +        
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH 420
            +QI  +  N+L        +   V L  L   +N +             L  L+L+ N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQ 606

Query: 421 FVGEIPQSLSKCF-VLEGLFLNNNSLSGKIPRW--LGNLTRLQHIMMPKNHLEGPIPVEF 477
              EIP+        +EGL  ++N L   IP      ++  +  +    N +        
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 478 CQLDW-----LQILDISDNNISGSLPSCFHPL-SVEQVHLSKNML------HGQLKRGTF 525
           C +D         + +S N I       F     +  + LS N++        + K G +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 526 FNSYSLVTLDLSYNRLNGNISDW-VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL 584
            N+Y L T+DL +N+L     D+    L  LS++ + +N      P Q    +QL+   +
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGI 783

Query: 585 ------SNNSLHGSIPLCLDN----TTLHESYNNSSSLDKQF 616
                   N +    P  +        L    N+   +D++ 
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  182 bits (463), Expect = 7e-49
 Identities = 65/507 (12%), Positives = 140/507 (27%), Gaps = 42/507 (8%)

Query: 141 LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIP 200
            N   +         L N   +  L ++     G +  + +  LT ++ L    +   + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVS 362

Query: 201 ISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYH 260
                              + I     +          LS L   +   +  + P     
Sbjct: 363 GR-LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 261 QHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISN 320
           +  L+   + ++     F +  ++  TKL+ +   N           +        +   
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDY 476

Query: 321 NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 380
                +  +   + L  L  + +        +P    ++  LQ L+++ N          
Sbjct: 477 AKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 381 VV--------GCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSK 431
                         ++   +  N+LE    S +   +  L  L    N       ++   
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGT 593

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDWLQILDISD 490
              L  L L+ N +      +     +++ +    N L+  P       +  +  +D S 
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 491 NNISGSLPSCFHPL------SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL--- 541
           N I     +    +      +   V LS N +        F     + T+ LS N +   
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSI 712

Query: 542 ----NGNISDWVDGLSQLSHLILGHNNLEGEVP--VQLCKLNQLQLLDLSNNSLHGSIPL 595
                            L+ + L  N L   +    +   L  L  +D+S N    S P 
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPT 770

Query: 596 CLDN----TTLHESYNNSSSLDKQFEI 618
              N          +   +  ++    
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQ 797

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (439), Expect = 1e-45
 Identities = 84/630 (13%), Positives = 173/630 (27%), Gaps = 100/630 (15%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           + +   +  L L+             +   T L+ L+  + S  +   +       +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDM 375

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
                  +    +     + + L   D+    I  N     I  +S  SLK   +     
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-- 433

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
            TN    + + +  L  LQ++  A +                   +    +   +   S 
Sbjct: 434 -TNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELS- 486

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
             +L  + ++ L N      +     ++   L+S     N                    
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGI----------------- 528

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
             S +    D             ++   + +  +     +  L+   KL  L        
Sbjct: 529 --SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC------ 580

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
                              +N  R H+    G     L  L +  N ++           
Sbjct: 581 ------------------VHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH-----MFSRNFNLTNLRWLQ 415
            ++ L  S+N L              + S+  S N +            ++   N   + 
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS-------GKIPRWLGNLTRLQHIMMPKNH 468
           L  N       +  +    +  + L+NN ++               N   L  I +  N 
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 469 LEG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFF 526
           L           L +L  +D+S N  S S P+     S ++   +               
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ------------ 786

Query: 527 NSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 586
                   D   NR+       +     L  L +G N++  +V  +L    QL +LD+++
Sbjct: 787 -------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIAD 836

Query: 587 NSL----HGSIPLCLDNTTLHESYNNSSSL 612
           N        S+   ++       Y+ +  +
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  131 bits (330), Expect = 6e-32
 Identities = 49/381 (12%), Positives = 118/381 (30%), Gaps = 35/381 (9%)

Query: 265 EYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN-------DSLGGPFQLPIHSHKRLGMLD 317
           +Y  L  I    +   W   + T    +  +N       D  G    + + ++ R+  L 
Sbjct: 270 DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS 329

Query: 318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 377
           ++    +G +P  IG  L  L  L+   ++   S            + +   + +     
Sbjct: 330 LAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 378 EHLVVGCVNLESLALSNNSLEGH---MFSRNFNLTNLRWLQLEGNH-FVGEIPQSLSKCF 433
           +  +     L    L  +++  +      +  +  +L+  Q+      +  I +++ +  
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI 493
            L+ ++  N+  +              +             + +  L  L  +++ +   
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 494 SGSLPSCFHPL-SVEQVHLSKNMLHGQLKR--------GTFFNSYSLVTLDLSYNRLNG- 543
              LP   + L  ++ ++++ N      +                 +    + YN L   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 544 NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP--LCLDNTT 601
             S  +  + +L  L   HN +   +        +L  L L  N +   IP   C     
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ 620

Query: 602 LHE---SYNNSSSLDKQFEIS 619
           +     S+N    +   F   
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAK 641

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 533 TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS 592
             +   +         +D   +++ L L     +G VP  + +L +L++L    +S   S
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 593 IPLCLDNTTLHESYNNSSSLDKQFEISFSIEGPQ 626
             L  D     +         +       ++  Q
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (477), Expect = 7e-52
 Identities = 101/575 (17%), Positives = 195/575 (33%), Gaps = 42/575 (7%)

Query: 32  NLEYLTLDSSSLHISLLQSI-ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEG 90
            +  +T          L  +   I  S KN+ +    +  L     F +F  L+ LD+  
Sbjct: 10  VVPNITYQCMDQK---LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLS- 64

Query: 91  ALIALNTSFLQIIGES---MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYND 147
                      I  ++   +  L  L L G+ +              L  L+ L      
Sbjct: 65  -----RCEIETIEDKAWHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETK 115

Query: 148 LRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFF 207
           L     + +  + +L+ L+V+ N +      +   +LT++  + LS N+ Q  I++    
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQ 174

Query: 208 NHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYV 267
                       +     I           +L  L+L   +    I    L +   L   
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 268 DLSHIKMNGEFPTWLLENNT-------KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISN 320
            L   +   E    + E +         + +  L   +      +  H    +  + ++ 
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 321 NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 380
            + +    +E         SL+I    L         ++ FL+ L L+ N  +    +  
Sbjct: 295 VSIKY---LEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKK-- 346

Query: 381 VVGCVNLESLALSNNSLE--GHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGL 438
            V   +L  L LS N+L   G     +    +LR L L  N  +  +  +      L+ L
Sbjct: 347 -VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL 404

Query: 439 FLNNNSLSGKIPRW-LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497
              +++L          +L +L ++ +   + +      F  L  L  L ++ N+   + 
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 498 PSCF--HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL 555
            S    +  ++  + LSK  L   +  G F   + L  L++S+N L    S   + L  L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 556 SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
           S L    N +E    +       L   +L+NNS+ 
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  170 bits (434), Expect = 7e-46
 Identities = 101/551 (18%), Positives = 178/551 (32%), Gaps = 55/551 (9%)

Query: 80  FKSLEHLDMEGALIA--LNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVH 137
             S +++D+    +    + SF      +   L++L L    +      I D+    L H
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFS-----NFSELQWLDLSRCEI----ETIEDKAWHGLHH 81

Query: 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF 197
           L  L +  N ++   P   + +TSL  L     +L  S+ S P+  L ++++L +++N  
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFI 140

Query: 198 QIPISLEPFFNHSRLKSFYADNNEINAEITQS-HSLTAPNFQLSRLSLSSGYGDGFI--F 254
                   F N + L       N I          L         L +S       I   
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN----PIDFI 196

Query: 255 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLG 314
               +    L  + L     +       L+N   L    L+         L I     + 
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 315 MLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTG 374
            L     +                    ++           F  +  +  + L+   +  
Sbjct: 257 GLCDVTID-----------------EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK- 298

Query: 375 EIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFV 434
            + +         +SL++    L+        +L  L+ L L  N   G I         
Sbjct: 299 YLEDV--PKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNK--GSISFKKVALPS 351

Query: 435 LEGLFLNNNSLSGKIPR--WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 492
           L  L L+ N+LS              L+H+ +  N     +   F  L+ LQ LD   + 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410

Query: 493 ISGSLP-SCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNI-SDWV 549
           +      S F  L  +  + +S          G F    SL TL ++ N    N  S+  
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 550 DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN----TTLHES 605
              + L+ L L    LE         L++LQLL++S+N+L        +     +TL  S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 606 YNNSSSLDKQF 616
           +N   +     
Sbjct: 530 FNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (396), Expect = 8e-41
 Identities = 86/502 (17%), Positives = 168/502 (33%), Gaps = 35/502 (6%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
             L+ L L+ N     +  +      T+LE L    + L       I     +LK L++ 
Sbjct: 80  HHLSNLILTGNPIQSFSPGS--FSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVA 136

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSILGTN 123
              ++       F +  +L H+D+    +  +  + LQ + E+      L +       N
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-----N 191

Query: 124 SSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRILDVSSNQLTG-----SIS 177
               +       + L  L +  N    ++   CL N+  L +  +   +           
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 178 SSPLVHLTSIEELYLSNNHFQI-PISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
            S +  L  +        +       +  F   + + +       I             +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-----YLEDVPKH 306

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
           F+   LS+       F      +    L+ + L+  K +  F    L +   L  L L  
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSISFKKVALPS---LSYLDLSR 359

Query: 297 DSLG--GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIP- 353
           ++L   G           L  LD+S N     I       L  L  L+   + L      
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLR 412
           S+F +++ L  LD+S  +      + + +G  +L +L ++ NS + +  S  F N TNL 
Sbjct: 418 SAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472
           +L L                  L+ L +++N+L          L  L  +    N +E  
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 473 IPVEFCQLDWLQILDISDNNIS 494
             +       L   ++++N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (360), Expect = 4e-36
 Identities = 68/423 (16%), Positives = 133/423 (31%), Gaps = 16/423 (3%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
             +  +L  + LS N    I     +         L+LD S   I  +Q  A     L  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           L++ G   +  +      +   L    +         +        M  L  +++    L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 121 GTNSSRILDRG-LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
              +    D      L ++  +++A   +       +      + L +   QL       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK----QF 322

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
           P + L  ++ L L+ N   I            L       N +    + S   +  +   
Sbjct: 323 PTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNAL----SFSGCCSYSDLGT 375

Query: 240 SRL-SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDS 298
           + L  L   +    I         +L+++D  H  +          +  KL  L +   +
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 299 LGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGN 358
               F         L  L ++ N+F+ +    +     +L  L++S   L+      F  
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 359 MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEG 418
           +  LQ+L++S+N+L      H      +L +L  S N +E           +L +  L  
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 419 NHF 421
           N  
Sbjct: 555 NSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.3 bits (209), Expect = 3e-17
 Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 26/296 (8%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
                +L +         T      +   L+ LTL  +    S+     +  PSL  L +
Sbjct: 306 HFKWQSLSIIRCQLKQFPTL-----DLPFLKSLTL--TMNKGSISFKKVA-LPSLSYLDL 357

Query: 64  IGCEVNGLVRGQGFP-HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
               ++             SL HLD+      + ++        +  L++L    S L  
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM----GLEELQHLDFQHSTLKR 413

Query: 123 NSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV 182
            +         SL  L  L+I+Y + +         +TSL  L ++ N    +  S+   
Sbjct: 414 VTEFSA---FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 183 HLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL 242
           + T++  L LS    +  IS   F    RL+     +N +    +  ++     + LS L
Sbjct: 471 NTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN---QLYSLSTL 526

Query: 243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSH-----IKMNGEFPTWLLENNTKLRQLS 293
             S    +        +    L + +L++     I  + +F  W+ E    L  + 
Sbjct: 527 DCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  182 bits (463), Expect = 1e-49
 Identities = 83/551 (15%), Positives = 183/551 (33%), Gaps = 65/551 (11%)

Query: 86  LDMEGALIALNTSFLQIIGE------SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQ 139
           L+  G +  L+       G        +  L+ L+L       N      +G+ + +  +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 140 VLNIAYNDLRGSLPWCLA--NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF 197
                    + +        + + L    ++S+    SI  S         ++   +N+ 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNI 195

Query: 198 Q-IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPK 256
             +  +       ++L+ FY  N+   AE           ++      +  Y        
Sbjct: 196 TFVSKA---VMRLTKLRQFYMGNSPFVAENICE------AWENENSEYAQQYK---TEDL 243

Query: 257 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLP--------IH 308
              +  DL  V++ +     + PT+L +   +++ +++  +      QL           
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 309 SHKRLGMLDISNNNFR-GHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367
             +++ ++ I  NN +   +   +   +  L  L    N L+G +P+ FG+   L  L+L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNL 360

Query: 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVG--- 423
           + N +T  IP +       +E+L+ ++N L+      +  +++ +  +    N       
Sbjct: 361 AYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 424 ----EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-------P 472
                +  +  K   +  + L+NN +S          + L  I +  N L          
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 473 IPVEFCQLDWLQILDISDNNISGSLPSCFHPL---SVEQVHLSKNMLH------GQLKRG 523
               F     L  +D+  N ++  L   F       +  + LS N               
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 524 TFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD 583
             F        D   NR      + +     L+ L +G N++   V  ++     + +LD
Sbjct: 539 KGFGI--RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLD 593

Query: 584 LSNNSLHGSIP 594
           + +N       
Sbjct: 594 IKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  178 bits (453), Expect = 2e-48
 Identities = 79/611 (12%), Positives = 163/611 (26%), Gaps = 86/611 (14%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           + S   +  L L     +        +   T LE L L S    ++          +  +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
                       +     +    +  D+    I  +     I   S  +LK   +     
Sbjct: 135 DEQKQKMRMHY-QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG---Q 190

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
            +N+   + + +  L  L+   +  +              +         Q   +     
Sbjct: 191 LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLK- 244

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
             +L  + ++ + N      +          ++      N                    
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRG------------------ 285

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
            +S      D          +  ++ + + +                        N+   
Sbjct: 286 -ISGEQLKDDWQALADAPVGEK-IQIIYIGY------------------------NNLKT 319

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
            P +  +   K+LGML+   N   G +P   G     L SLN++ N +     +  G  +
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANFCGFTE 377

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG-------HMFSRNFNLTNLRW 413
            ++ L  ++N L              + ++  S N +          +    F   N+  
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 414 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG-------KIPRWLGNLTRLQHIMMPK 466
           + L  N       +  S    L  + L  N L+               N   L  I +  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 467 NHLEG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-------VEQVHLSKNMLHG 518
           N L           L +L  +D+S N+ S   P+     S         Q     N    
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 519 QLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 578
           +          SL  L +  N +   +++ +     +S L +  N         +C   +
Sbjct: 557 EWPE-GITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 579 LQLLDLSNNSL 589
             +  L  +  
Sbjct: 613 AGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  148 bits (375), Expect = 5e-38
 Identities = 74/515 (14%), Positives = 152/515 (29%), Gaps = 92/515 (17%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
                   +   SNN T +   ++ +   T L    + +S         +A         
Sbjct: 180 RITLKDTQIGQLSNNITFV---SKAVMRLTKLRQFYMGNSPF-------VAENICEAWEN 229

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGES---MPSLKYLSL--- 115
                          + + K L  +++       N   L  +      +P ++ +++   
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEV------YNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 116 -FGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR-GSLPWCLANMTSLRILDVSSNQLT 173
              S                   +Q++ I YN+L+   +   L  M  L +L+   NQL 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 174 GSISSSPLVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNNEINAEITQSHSL 232
           G + +        +  L L+ N    IP +        ++++    +N++          
Sbjct: 344 GKLPA--FGSEIKLASLNLAYNQITEIPANF--CGFTEQVENLSFAHNKL--------KY 391

Query: 233 TAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQL 292
               F    +S                    +  +D S+              N    ++
Sbjct: 392 IPNIFDAKSVS-------------------VMSAIDFSY--------------N----EI 414

Query: 293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDG-- 350
             V+     P          +  +++SNN        E+      L S+N+  N L    
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIP 473

Query: 351 -----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRN 405
                    +F N   L  +DL  N LT    +        L  + LS NS      ++ 
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 406 FNLTNLRWLQLE------GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
            N + L+   +       GN  + E P+ ++ C  L  L + +N +   +   +     +
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNI 589

Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
             + +  N          C      +  +  +   
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  145 bits (369), Expect = 4e-37
 Identities = 42/341 (12%), Positives = 108/341 (31%), Gaps = 26/341 (7%)

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDG----SI 352
           D  G    + ++S+ R+  L +      G +P  IG  L  L  L +  +          
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFG 125

Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEHL-VVGCVNLESLALSNNSLEGHMFSRNFNLTNL 411
           P         +       H      ++       +L    ++++  +  +   +      
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 412 RWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG 471
             +    N+    + +++ +   L   ++ N+    +           ++          
Sbjct: 186 TQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYK 239

Query: 472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKR-------G 523
              +++  L  L  +++ +      LP+    L  ++ ++++ N      +         
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 524 TFFNSYSLVTLDLSYNRL-NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLL 582
                  +  + + YN L    +   +  + +L  L   +N LEG++P       +L  L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358

Query: 583 DLSNNSLHGSIPLCLDNTT----LHESYNNSSSLDKQFEIS 619
           +L+ N +          T     L  ++N    +   F+  
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (297), Expect = 6e-28
 Identities = 32/296 (10%), Positives = 85/296 (28%), Gaps = 26/296 (8%)

Query: 332 GDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLA 391
           G    + ++ N  ++        S  +   +  L L     +G +P+ +      LE LA
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI-GQLTELEVLA 111

Query: 392 LSNNSLEGHMFSRNF----NLTNLRWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSL 445
           L ++  + +             +    Q    H+         +     L    +N++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 446 SGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 505
              I +      +   I    N++   +     +L  L+   + ++              
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 506 VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
               +      +       + N   L  +++        +  ++  L ++  + +  N  
Sbjct: 231 ----NSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 566 --------EGEVPVQLCKLNQLQLLDLSNNSL-HGSIPLCLDN----TTLHESYNN 608
                   + +         ++Q++ +  N+L    +   L        L   YN 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLL 582
           G      +    +   +         ++   +++ L L      G VP  + +L +L++L
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 583 DLSNNSLHG----SIPLCLDNTTLHESYNNSS 610
            L ++          P  +      E      
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  165 bits (419), Expect = 3e-43
 Identities = 111/560 (19%), Positives = 190/560 (33%), Gaps = 48/560 (8%)

Query: 77  FPHFKSLEHLDMEGALIA--LNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCS 134
                + E L +    I     +SF       +  L+ L L           I      +
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSF-----PFLEQLQLLELGSQYT---PLTIDKEAFRN 71

Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLT-GSISSSPLVHLTSIEELYLS 193
           L +L++L++  + +    P     +  L  L +    L+   +      +L ++  L LS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 194 NNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQS-HSLTAPNFQ---LSRLSLSSGYG 249
            N  +       F   + LKS    +N+I          L         L+  SL S   
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHS 309
             +      +    LE +D+S      +         +K +  SL+            H+
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 310 -------------HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSF 356
                           +  LD+S+      +   + + L  L  LN++ N ++     +F
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416
             +  LQ+L+LS N L  E+      G   +  + L  N +          L  L+ L L
Sbjct: 311 YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPV 475
             N        ++     +  +FL+ N L       L        I + +N LE   I  
Sbjct: 370 RDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILY 420

Query: 476 EFCQLDWLQILDISDNNISGSLPSCF--HPLSVEQVHLSKNMLHG----QLKRGTFFNSY 529
              ++  LQIL ++ N  S            S+EQ+ L +NML      +L    F    
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 530 SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            L  L L++N LN         L+ L  L L  N L       L     L++LD+S N L
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQL 538

Query: 590 HGSIPLCLDNTTLHESYNNS 609
               P    + ++ +  +N 
Sbjct: 539 LAPNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  150 bits (380), Expect = 3e-38
 Identities = 90/520 (17%), Positives = 176/520 (33%), Gaps = 57/520 (10%)

Query: 135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
           L   + L +++N +R         +  L++L++ S     +I      +L ++  L L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 195 NHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIF 254
           +     +  + F     L         ++  + +          L+RL LS         
Sbjct: 83  SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF-RNLKALTRLDLSKNQIRSLYL 140

Query: 255 PKFLYHQHDLEYVDLSHIKM------------NGEFPTWLLENNTKLRQLSLVNDSLGGP 302
                  + L+ +D S  ++                  + L  N+   ++S+       P
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 303 FQLPIHSHKRLGMLDISNNNFRGHIP-----------VEIGDVLPSLFSLNISMNALDGS 351
           F+     +  L +LD+S N +   I                 +   +       + +   
Sbjct: 201 FR-----NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 352 IPSSFGNMK--FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNF 406
             ++F  +    ++ LDLS+  +   +   +     +L+ L L+ N    +    F    
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFY--- 311

Query: 407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466
            L NL+ L L  N        +      +  + L  N ++    +    L +LQ + +  
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFF 526
           N L          +  +  + +S N +  +LP     L+   +HLS+N L          
Sbjct: 372 NALT-----TIHFIPSIPDIFLSGNKLV-TLPK--INLTANLIHLSENRLENLDILYFLL 423

Query: 527 NSYSLVTLDLSYNRLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLCK-----LNQLQ 580
               L  L L+ NR +    D        L  L LG N L+     +LC      L+ LQ
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 581 LLDLSNNSLHGSIPLCLDN----TTLHESYNNSSSLDKQF 616
           +L L++N L+   P    +      L  + N  + L    
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (325), Expect = 2e-31
 Identities = 108/565 (19%), Positives = 196/565 (34%), Gaps = 75/565 (13%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIA-SIFPSLKNL 61
           + P+L  L L S+    +           +L  L L    L  ++L+        +L  L
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDA--FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALI-ALNTSFLQIIGESMPSLKYLSLFGSIL 120
            +   ++  L     F    SL+ +D     I  +    L+ +     +L + SL  + L
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL--QGKTLSFFSLAANSL 186

Query: 121 GTNSSRILDRGLCSL--VHLQVLNIAYN------------DLRGSLPWCLANMTSLRILD 166
            +  S    + +     + L++L+++ N             +  S  + L     +    
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 167 VSSNQLTGSISSSPLVHL--TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINA 224
              + +      +    L  +S+  L LS+      ++   F     LK      N+IN 
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINK 304

Query: 225 -EITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 283
                 + L      L  L+LS       ++    Y    + Y+DL    +         
Sbjct: 305 IADEAFYGLD----NLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTF 358

Query: 284 ENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNI 343
           +   KL+ L L +++L       IH    +  + +S N         +  +  +   +++
Sbjct: 359 KFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHL 408

Query: 344 SMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF 402
           S N L+   I      +  LQIL L+ N  +    +       +LE L L  N L+    
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 403 SRN-----FNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT 457
           +         L++L+ L L  N+     P   S    L GL LN+N            LT
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-----------RLT 517

Query: 458 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLH 517
            L H  +P N               L+ILDIS N +    P  F  LS   + ++ N   
Sbjct: 518 VLSHNDLPAN---------------LEILDISRNQLLAPNPDVFVSLS--VLDITHNKFI 560

Query: 518 GQLKRGTFFNSYSLVTLDLSYNRLN 542
            + +  TF N  +   + ++    +
Sbjct: 561 CECELSTFINWLNHTNVTIAGPPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (308), Expect = 3e-29
 Identities = 80/513 (15%), Positives = 156/513 (30%), Gaps = 45/513 (8%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIAS--IFPSLK 59
           G   SL ++  SSN    +            L+  TL   SL  + L S  S      + 
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHE-----LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
               +  E+  +          +   +D+ G      +            +         
Sbjct: 200 PFRNMVLEILDV--------SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
           +          GL     ++ L++++  +          +  L++L+++ N++   I+  
Sbjct: 252 IKDPDQNTFA-GLARS-SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADE 308

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
               L +++ L LS N     +    F+   ++       N I               +L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIA---IIQDQTFKFLEKL 364

Query: 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
             L L             ++    +  + LS  K+       L  N   L +  L N  +
Sbjct: 365 QTLDLRDN------ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418

Query: 300 GGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS---- 355
                        L +L ++ N F      +     PSL  L +  N L  +  +     
Sbjct: 419 LYFLL----RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 356 -FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414
            F  +  LQ+L L++N+L   +P  +      L  L+L++N L   + S N    NL  L
Sbjct: 475 VFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEIL 531

Query: 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPI 473
            +  N  +   P        L  L + +N    +       N     ++ +         
Sbjct: 532 DISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNHTNVTIAGPP-ADIY 587

Query: 474 PVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506
            V       + +  +S               S+
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 5e-15
 Identities = 47/227 (20%), Positives = 76/227 (33%), Gaps = 12/227 (5%)

Query: 407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKI-PRWLGNLTRLQHIMMP 465
            L     L L  N+       S      L+ L L +      I      NL  L+ + + 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 466 KNHLEGPIPVEFCQLDWLQILDISDNNISGSL--PSCFHPL-SVEQVHLSKNMLHGQLKR 522
            + +    P  F  L  L  L +    +S ++     F  L ++ ++ LSKN +      
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ--LSHLILGHNNLEGEVPVQLCKLNQ-- 578
            +F    SL ++D S N++       ++ L    LS   L  N+L   V V   K     
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 579 ----LQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISFS 621
               L++LD+S N     I     N        +           F 
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 34/227 (14%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +   P L  L L+ N F+   +  Q      +LE L L  + L ++    +         
Sbjct: 422 LLRVPHLQILILNQNRFSSC-SGDQTPSENPSLEQLFLGENMLQLAWETELCWDV----- 475

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
                           F     L+ L +    +    S    +   + +L+ LSL  + L
Sbjct: 476 ----------------FEGLSHLQVLYLNHNYL---NSLPPGVFSHLTALRGLSLNSNRL 516

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
              S   L        +L++L+I+ N L    P       SL +LD++ N+       S 
Sbjct: 517 TVLSHNDL------PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFICECELST 567

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEIT 227
            ++  +   + ++     I       F+   L S   +  +    + 
Sbjct: 568 FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (398), Expect = 2e-41
 Identities = 110/526 (20%), Positives = 187/526 (35%), Gaps = 26/526 (4%)

Query: 80  FKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQ 139
             S ++LD+    +            S P L+ L L    +      I D    SL HL 
Sbjct: 27  PFSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLS 79

Query: 140 VLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQI 199
            L +  N ++       + ++SL+ L      L  S+ + P+ HL +++EL +++N  Q 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 200 PISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLY 259
               E F N + L+     +N+I   I  +         L  LSL              +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQL---PIHSHKRLGML 316
            +  L  + L +   +       ++    L    LV         L      + + L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 317 DISNNNFRG--HIPVEIGDVLPSLFSLN-ISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373
            I         +   +I D+   L +++  S+ ++       F      Q L+L N    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 374 GEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN--HFVGEIPQSLSK 431
                 L     +L+ L  ++N           +L +L +L L  N   F G   QS   
Sbjct: 318 QFPTLKLK----SLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQLDWLQILDISD 490
              L+ L L+ N +   +      L +L+H+    ++L+       F  L  L  LDIS 
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 491 NNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV 549
            +   +    F+ L S+E + ++ N          F    +L  LDLS  +L        
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 550 DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595
           + LS L  L +  N L+        +L  LQ + L  N    S P 
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (357), Expect = 7e-36
 Identities = 94/483 (19%), Positives = 177/483 (36%), Gaps = 35/483 (7%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
             + L++++N LR    +   +   L++LD+S  ++  +I       L+ +  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 197 FQIPISLEPFFNHSRLKSFYADNNEINAEITQS-HSLTAPNFQLSRLSLSSGYGDGFIFP 255
            Q  ++L  F   S L+   A    + +        L      L  L+++      F  P
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNLIQSFKLP 142

Query: 256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLR----QLSLVNDSLGGPFQLPIHSHK 311
           ++  +  +LE++DLS  K+        L    ++      L L  + +    Q       
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI 200

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI------PSSFGNMKFLQI- 364
           RL  L + NN    ++       L  L    + +              S+   +  L I 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 365 -LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG-HMFSRNFNLTNLRWLQLEGNHFV 422
              L+      +    L     N+ S +L + ++E    FS NF   +L  +  +   F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 423 GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQL 480
               +SL +      L   +N           +L  L+ + + +N L   G         
Sbjct: 321 TLKLKSLKR------LTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 481 DWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
             L+ LD+S N +  ++ S F  L  +E +    + L    +   F +  +L+ LD+S+ 
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLHGSIPLCLD 598
                 +   +GLS L  L +  N+ +         +L  L  LDLS   L    P   +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 599 NTT 601
           + +
Sbjct: 492 SLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (329), Expect = 3e-32
 Identities = 100/505 (19%), Positives = 185/505 (36%), Gaps = 24/505 (4%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
            SFP L  L LS      I        + ++L  L L  + +  SL     S   SL+ L
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEG---ALIALNTSFLQIIGESMPSLKYLSLFGS 118
             +   +  L       H K+L+ L++         L   F      ++ +L++L L  +
Sbjct: 106 VAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSN 159

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
            + +     L       +    L+++ N +    P     +  L  L + +N  + ++  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK 218

Query: 179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNH--SRLKSFYADNNEINAEITQSHSLTAPN 236
           + +  L  +E   L    F+   +LE F       L +   +   +         +    
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L+ +S  S         K   +    ++++L + K   +FPT  L++  +L   S   
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKG 337

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRG-HIPVEIGDVLPSLFSLNISMNALDGSIPSS 355
            +      LP      L  LD+S N         +      SL  L++S N +  ++ S+
Sbjct: 338 GNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415
           F  ++ L+ LD  +++L       + +   NL  L +S+             L++L  L+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 416 LEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP 474
           + GN F         ++   L  L L+   L    P    +L+ LQ + M  N L+    
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 475 VEFCQLDWLQILDISDNNISGSLPS 499
             F +L  LQ + +  N    S P 
Sbjct: 512 GIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 5e-28
 Identities = 87/470 (18%), Positives = 162/470 (34%), Gaps = 62/470 (13%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
            S + LD+S N L   + S        ++ L LS    Q  I    + + S L +     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 220 NEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 279
           N I                              +          L+ +      +     
Sbjct: 86  NPIQ----------------------------SLALGAFSGLSSLQKLVAVETNLA-SLE 116

Query: 280 TWLLENNTKLRQLSLVNDSLG-GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSL 338
            + + +   L++L++ ++ +          +   L  LD+S+N  +  I      VL  +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQM 175

Query: 339 ----FSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL-- 392
                SL++S+N ++   P +F  ++ L  L L NN  +  + +  + G   LE   L  
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 393 ----SNNSLEGHMFSRNFNLTNLRWLQLEGNH---FVGEIPQSLSKCFVLEGLFLNNNSL 445
               +  +LE    S    L NL   +    +   ++ +I    +    +    L + ++
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 446 SGKIPR-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL 504
                  +      L+ +                +L  L+ L  + N    +  S     
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNKGG-NAFSEVDLP 347

Query: 505 SVEQVHLSKNMLHGQ-LKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563
           S+E + LS+N L  +     + F + SL  LDLS+N +   +S    GL QL HL   H+
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

Query: 564 NLEG-EVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN----TTLHESYNN 608
           NL+          L  L  LD+S+     +     +       L  + N+
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 19/240 (7%)

Query: 366 DLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFV 422
                +   +IP++L     + ++L LS N    L  + F    +   L+ L L      
Sbjct: 13  QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQ 65

Query: 423 GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 482
                +      L  L L  N +          L+ LQ ++  + +L          L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 483 LQILDISDNNI-SGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFN----SYSLVTLDL 536
           L+ L+++ N I S  LP  F  L ++E + LS N +   +               ++LDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184

Query: 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIPL 595
           S N +N  I        +L  L L +N     V       L  L++  L          L
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (338), Expect = 7e-34
 Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 11/295 (3%)

Query: 304 QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ 363
            +P        +LD+  N  +  +  +     P L  L ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNH 420
            L L +N L   IP  +  G  NL  L +S N    L  +MF    +L NL+ L++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 421 FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL 480
            V    ++ S    LE L L   +L+      L +L  L  + +   ++       F +L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 481 DWLQILDISDNNISGSL-PSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
             L++L+IS      ++ P+C + L++  + ++   L   +      +   L  L+LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
            ++      +  L +L  + L    L    P     LN L++L++S N L  ++ 
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (275), Expect = 1e-25
 Identities = 58/362 (16%), Positives = 121/362 (33%), Gaps = 64/362 (17%)

Query: 185 TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL 244
           T    L L  N  +  ++ + F +   L+    + N +                      
Sbjct: 32  TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIV---------------------- 68

Query: 245 SSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQ 304
                   + P    +  +L  + L   ++    P  +    + L +L +  + +     
Sbjct: 69  ------SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV---- 117

Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
                        + +  F+          L +L SL +  N L      +F  +  L+ 
Sbjct: 118 ------------ILLDYMFQD---------LYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156

Query: 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHF 421
           L L   +LT  IP   +     L  L L +    ++  + F     L  L+ L++    +
Sbjct: 157 LTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFK---RLYRLKVLEISHWPY 212

Query: 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 481
           +  +  +      L  L + + +L+      + +L  L+ + +  N +         +L 
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 482 WLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR 540
            LQ + +    ++   P  F  L  +  +++S N L   L+   F +  +L TL L  N 
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP 331

Query: 541 LN 542
           L 
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 6e-24
 Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 13/236 (5%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGN 419
           + +          +PE +         L L  N   +L    F+   +  +L  L+L  N
Sbjct: 14  RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNEN 66

Query: 420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479
                 P + +  F L  L L +N L          L+ L  + + +N +   +   F  
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 480 LDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY 538
           L  L+ L++ DN++       F  L S+EQ+ L K  L   +      + + L+ L L +
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 539 NRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
             +N         L +L  L + H      +         L  L +++ +L  ++P
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP 240

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 9e-23
 Identities = 70/343 (20%), Positives = 129/343 (37%), Gaps = 45/343 (13%)

Query: 108 PSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDV 167
              + L L  + +      +      S  HL+ L +  N +    P    N+ +LR L +
Sbjct: 32  TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 168 SSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEIT 227
            SN+L   I       L+++ +L +S N   I +    F +   LKS    +N++     
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLV---- 141

Query: 228 QSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 287
                                   +I  +     + LE + L    +    PT  L +  
Sbjct: 142 ------------------------YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNA 347
            L  L L + ++            RL +L+IS+  +   +       L +L SL+I+   
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCN 235

Query: 348 LDGSIPS-SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFS 403
           L  ++P  +  ++ +L+ L+LS N ++  I   ++   + L+ + L       +E + F 
Sbjct: 236 LT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 404 RNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
               L  LR L + GN               LE L L++N L+
Sbjct: 294 ---GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 77/396 (19%), Positives = 128/396 (32%), Gaps = 96/396 (24%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
                 L L  N    +        +F +LE L L+ +   +S ++  A  F +L NL  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE--FASFPHLEELELNEN--IVSAVEPGA--FNNLFNLRT 84

Query: 64  IGCEVNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
           +G   N L  +    F    +L  LD+    I                            
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKI---------------------------- 116

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
                +LD     L +L+ L +  NDL        + + SL  L +    LT SI +  L
Sbjct: 117 ---VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241
            HL  +  L L + +    I    F    RLK     +      +            L+ 
Sbjct: 173 SHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPY---LDTMTPNCLYGLNLTS 228

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 301
           LS++                      +L+ +      P   + +   LR L+L       
Sbjct: 229 LSITHC--------------------NLTAV------PYLAVRHLVYLRFLNL------- 255

Query: 302 PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKF 361
                  S+  +    I  +             L  L  + +    L    P +F  + +
Sbjct: 256 -------SYNPIST--IEGSMLHE---------LLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397
           L++L++S N LT  + E +     NLE+L L +N L
Sbjct: 298 LRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 53/300 (17%), Positives = 114/300 (38%), Gaps = 24/300 (8%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           SFP L  L L+ N  + +       +N  NL  L L S+   + L+     +F  L NL+
Sbjct: 54  SFPHLEELELNENIVSAVEPGA--FNNLFNLRTLGLRSN--RLKLIP--LGVFTGLSNLT 107

Query: 63  MIGCEVNGL--VRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSI 119
            +    N +  +    F    +L+ L++    L+ ++          + SL+ L+L    
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS----GLNSLEQLTLEKCN 163

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
           L    + I    L  L  L VL + + ++     +    +  L++L++S      +++ +
Sbjct: 164 L----TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
            L +  ++  L +++ +    +      +   L+      N I     +   L     +L
Sbjct: 220 CL-YGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPI--STIEGSML-HELLRL 274

Query: 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
             + L  G     + P      + L  +++S  ++       +  +   L  L L ++ L
Sbjct: 275 QEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (333), Expect = 3e-33
 Identities = 104/484 (21%), Positives = 181/484 (37%), Gaps = 53/484 (10%)

Query: 92  LIALNTSFLQIIG----ESMPSLKYLSLFGSILGTNSSRILD-RGLCSLVHLQVLNIAYN 146
            +        +        +  +  L         +   I    G+  L +L  +N + N
Sbjct: 26  KMKTVLGKTNVTDTVSQTDLDQVTTLQA-------DRLGIKSIDGVEYLNNLTQINFSNN 78

Query: 147 DLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPF 206
            L    P  L N+T L  + +++NQ+      +PL +LT++  L L NN       ++P 
Sbjct: 79  QLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQIT---DIDPL 130

Query: 207 FNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEY 266
            N + L      +N I+ +I+    LT     L +LS      +     K L +   LE 
Sbjct: 131 KNLTNLNRLELSSNTIS-DISALSGLT----SLQQLSFG----NQVTDLKPLANLTTLER 181

Query: 267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGH 326
           +D+S  K++       L   T L  L   N+ +      P+     L  L ++ N  +  
Sbjct: 182 LDISSNKVSDISV---LAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD- 235

Query: 327 IPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN 386
               +   L +L  L+++ N +    P     +  L  L L  N ++   P   + G   
Sbjct: 236 -IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAGLTA 288

Query: 387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
           L +L L+ N LE    S   NL NL +L L  N+     P  +S    L+ LF  NN +S
Sbjct: 289 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344

Query: 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506
                 L NLT +  +    N +    P     L  +  L ++D   + +  +    +S+
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566
                 KN+    +   T  +  S    D+++N  +   ++     SQ   +  G     
Sbjct: 401 PN--TVKNVTGALIAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFS 457

Query: 567 GEVP 570
           G V 
Sbjct: 458 GTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  129 bits (326), Expect = 3e-32
 Identities = 93/459 (20%), Positives = 166/459 (36%), Gaps = 44/459 (9%)

Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
              +L       +   ++  ++     ++  +  L      +    S   + +L ++ ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGD 250
             SNN       + P  N ++L     +NN+I  +IT   +LT     L+ L+L     +
Sbjct: 74  NFSNNQLT---DITPLKNLTKLVDILMNNNQIA-DITPLANLT----NLTGLTLF---NN 122

Query: 251 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSH 310
                  L +  +L  ++LS   ++       L   T L+QLS  N         P+ + 
Sbjct: 123 QITDIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLK---PLANL 176

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
             L  LDIS+N         +   L +L SL  + N +    P   G +  L  L L+ N
Sbjct: 177 TTLERLDISSNKVSD--ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS 430
            L  +I    +    NL  L L+NN +     +    LT L  L+L  N      P  L+
Sbjct: 232 QLK-DIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LA 284

Query: 431 KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 490
               L  L LN N L    P  + NL  L ++ +  N++    P     L  LQ L   +
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340

Query: 491 NNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD 550
           N +S  + S  +  ++  +    N +          N   +  L L+         ++  
Sbjct: 341 NKVS-DVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 551 GLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            +S  + +      L    P  +         D++ N  
Sbjct: 397 NVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (303), Expect = 3e-29
 Identities = 89/452 (19%), Positives = 166/452 (36%), Gaps = 43/452 (9%)

Query: 161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
            L    ++ +     I       L    +  L   +    +S        ++ +  AD  
Sbjct: 2   PLGSATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRL 56

Query: 221 EINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPT 280
            I   I     L      L++++ S+         K L     L  + +++ ++    P 
Sbjct: 57  GIK-SIDGVEYLN----NLTQINFSNNQLTDITPLKNL---TKLVDILMNNNQIADITP- 107

Query: 281 WLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFS 340
             L N T L  L+L N+ +      P+ +   L  L++S+N       +     L SL  
Sbjct: 108 --LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQQ 160

Query: 341 LNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH 400
           L+      D        N+  L+ LD+S+N ++       +    NLESL  +NN +   
Sbjct: 161 LSFGNQVTD---LKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISD- 213

Query: 401 MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ 460
             +    LTNL  L L GN        +L+    L  L L NN +S   P  L  LT+L 
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 461 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL 520
            + +  N +    P     L  L  L++++N +   +    +  ++  + L  N +    
Sbjct: 269 ELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDI- 324

Query: 521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQ 580
                 +   L  L    N+++      +  L+ ++ L  GHN +    P  L  L ++ 
Sbjct: 325 --SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 581 LLDLSNNSLHGSIPLCLDNTTLHESYNNSSSL 612
            L L++ +   +      N ++  +  N +  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 3e-28
 Identities = 97/492 (19%), Positives = 172/492 (34%), Gaps = 79/492 (16%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +        L   N TD  +      +   +  L      L I  +  +     +L  ++
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQA--DRLGIKSIDGVEY-LNNLTQIN 74

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
               ++  +       +   L  + M    IA  T        ++ +L  L+LF + +  
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPL-----ANLTNLTGLTLFNNQITD 126

Query: 123 NSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV 182
                    L +L +L  L ++ N +       L+ +TSL+ L   +          PL 
Sbjct: 127 IDP------LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV----TDLKPLA 174

Query: 183 HLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL 242
           +LT++E L +S+N       +      + L+S  A NN+I+ +IT    LT         
Sbjct: 175 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS-DITPLGILTN-------- 222

Query: 243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP 302
                                L+ + L+  ++  +  T  L + T L  L L N+ +   
Sbjct: 223 ---------------------LDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNL 258

Query: 303 FQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFL 362
              P+    +L  L +  N      P+     L +L +L ++ N L+   P    N+K L
Sbjct: 259 --APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNL 311

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFV 422
             L L  N+++   P   V     L+ L   NN +     S   NLTN+ WL    N   
Sbjct: 312 TYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 366

Query: 423 GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 482
              P  L+    +  L LN+ + +     +  N++    +      L  P          
Sbjct: 367 DLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGS 422

Query: 483 LQILDISDNNIS 494
               DI+ N  S
Sbjct: 423 YTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (250), Expect = 1e-22
 Identities = 78/449 (17%), Positives = 161/449 (35%), Gaps = 52/449 (11%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
               +L  +  S+N  TDI      L N T L  + ++++ +      +  +   +L NL
Sbjct: 65  EYLNNLTQINFSNNQLTDI----TPLKNLTKLVDILMNNNQI------ADITPLANLTNL 114

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
           + +    N +       +  +L  L++    I+  ++        + SL+ LS    +  
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLSFGNQVTD 169

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
                     L +L  L+ L+I+ N +       LA +T+L  L  ++NQ++     +PL
Sbjct: 170 LKP-------LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS---DITPL 217

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241
             LT+++EL L+ N  +    +    + + L      NN+I+     S  LT    +L+ 
Sbjct: 218 GILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG-LT----KLTE 269

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 301
           L L +           L     L  ++L+  ++    P   + N   L  L+L  +++  
Sbjct: 270 LKLGANQISNISPLAGLTA---LTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD 323

Query: 302 PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKF 361
               P+ S  +L  L   NN       +     L ++  L+   N +    P    N+  
Sbjct: 324 I--SPVSSLTKLQRLFFYNNKVSDVSSLAN---LTNINWLSAGHNQISDLTP--LANLTR 376

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421
           +  L L++   T     +     +      ++   +     S   +  +     +  N  
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS---DGGSYTEPDITWNL- 432

Query: 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIP 450
                +          +     + SG + 
Sbjct: 433 PSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.9 bits (221), Expect = 7e-19
 Identities = 59/297 (19%), Positives = 99/297 (33%), Gaps = 37/297 (12%)

Query: 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNS 396
            L S  I+ +     I  +   +       L   ++T  +          + +L      
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLG 57

Query: 397 LEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNL 456
           ++         L NL  +    N      P  L     L  + +NNN ++   P  L NL
Sbjct: 58  IKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 457 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML 516
           T L  + +  N +    P     L  L  L++S N IS  + +     S++Q+     + 
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVT 168

Query: 517 H----GQLKR--------------GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHL 558
                  L                       +L +L  + N+++      +  L+ L  L
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 559 ILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC-LDN-TTLHESYNNSSSLD 613
            L  N L+      L  L  L  LDL+NN +    PL  L   T L    N  S++ 
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 2e-32
 Identities = 94/576 (16%), Positives = 194/576 (33%), Gaps = 86/576 (14%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
            +       S +FT I +          ++ L L  S   I+ +                
Sbjct: 5   DASGVCDGRSRSFTSIPS-----GLTAAMKSLDL--SFNKITYIGHGD------------ 45

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIAL--NTSFLQIIGESMPSLKYLSLFGSILGT 122
                            +L+ L ++ + I      +F      S+ SL++L L  + L  
Sbjct: 46  ------------LRACANLQVLILKSSRINTIEGDAF-----YSLGSLEHLDLSDNHL-- 86

Query: 123 NSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
             S +       L  L+ LN+  N  +   +     N+T+L+ L + + +    I     
Sbjct: 87  --SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN-------AEITQSHSLTA 234
             LTS+ EL +     +     +   +   +       +E           ++    L  
Sbjct: 145 AGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 235 PNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
            +  L+R   S    D    P            D S  ++       LL    +L ++  
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK-----LLRYILELSEVEF 258

Query: 295 VNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPS 354
            + +L G              L   N +    +         ++  L+I    L   + +
Sbjct: 259 DDCTLNG--------------LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNL 411
            +  ++ ++ + + N+ +   +P        +LE L LS N          +      +L
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 412 RWLQLEGNHF--VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
           + L L  NH   + +  + L     L  L ++ N+    +P       +++ + +    +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 470 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSY 529
                V+ C    L++LD+S+NN+  S         ++++++S+N L   L   + F   
Sbjct: 423 RV---VKTCIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDASLFP-- 473

Query: 530 SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
            L+ + +S N+L        D L+ L  + L  N  
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (325), Expect = 9e-32
 Identities = 103/544 (18%), Positives = 184/544 (33%), Gaps = 63/544 (11%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
             ++ +L LS N  T I      L    NL+ L L SS                   ++ 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGD--LRACANLQVLILKSS------------------RINT 64

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
           I  +         F    SLEHLD+    L +L++S+       + SLKYL+L G+   T
Sbjct: 65  IEGDA--------FYSLGSLEHLDLSDNHLSSLSSSWFG----PLSSLKYLNLMGNPYQT 112

Query: 123 NSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV 182
                L   L +L  L++ N              A +TSL  L++ +  L  +  S  L 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGN--VETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLK 169

Query: 183 HLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL 242
            +  I  L L  +     +        S ++     +  +         +   +  + +L
Sbjct: 170 SIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP 302
           +          F + L     +  +                ++ T               
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILEL-----------SEVEFDDCTLNGLGDFNPSESDVV 277

Query: 303 FQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFL 362
            +L       +  L I       +    +  +L  +  + +  + +     S   ++K L
Sbjct: 278 SELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336

Query: 363 QILDLSNNHLTGEIPEHLVV--GCVNLESLALSNNSLE--GHMFSRNFNLTNLRWLQLEG 418
           + LDLS N +  E  ++        +L++L LS N L            L NL  L +  
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 419 NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 478
           N F   +P S      +  L L++  +   +         L+ + +  N+L+    +   
Sbjct: 397 NTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLDS-FSLF-- 449

Query: 479 QLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY 538
            L  LQ L IS N +  +LP       +  + +S+N L   +  G F    SL  + L  
Sbjct: 450 -LPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHT 506

Query: 539 NRLN 542
           N  +
Sbjct: 507 NPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (320), Expect = 4e-31
 Identities = 75/458 (16%), Positives = 138/458 (30%), Gaps = 52/458 (11%)

Query: 161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
           +  + D  S   T    S P     +++ L LS N     I        + L+     ++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 221 EINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPT 280
            IN                             I     Y    LE++DLS   ++    +
Sbjct: 61  RIN----------------------------TIEGDAFYSLGSLEHLDLSDNHLS-SLSS 91

Query: 281 WLLENNTKLRQLSLVNDSLGG-PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339
                 + L+ L+L+ +            +   L  L I N      I       L SL 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG 399
            L I   +L      S  +++ +  L L  +     + E       ++  L L + +L  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
             FS          ++           +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLN 264

Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHG 518
                  +  +    +   +   ++ L I    +   L + +  L  V+++ +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 519 QLKRGTFFNSYSLVTLDLSYNRLNGNI---SDWVDGLSQLSHLILGHNNLE--GEVPVQL 573
            +      +  SL  LDLS N +       S        L  L+L  N+L    +    L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 574 CKLNQLQLLDLSNNSLHGSIPLCLDNTTLHE---SYNN 608
             L  L  LD+S N+ H     C     +     S   
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 59/409 (14%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
              SLN L + + +  +  + +  L +  ++ +LTL  S     LL+  A I  S++ L 
Sbjct: 146 GLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLE 202

Query: 63  MIGCEVNGLVRGQ--GFPHFKSLEHLDMEGALIALNT-SFLQIIGESMPSLKYLSL---- 115
           +    +                ++ L   G+++   + + L  +   +  L  +      
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 116 ---FGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQL 172
               G    + S  + + G    V ++ L+I    L   L    + +  ++ + V ++++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 173 TGSISSSPLVHLTSIEELYLSNNHFQ--IPISLEPFFNHSRLKSFYADNNEINAEITQSH 230
              +  S   HL S+E L LS N        +         L++     N +        
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-------R 374

Query: 231 SLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH--IKMNGEFPTWLLENNTK 288
           S+      L  L                    +L  +D+S        +   W      K
Sbjct: 375 SMQKTGEILLTLK-------------------NLTSLDISRNTFHPMPDSCQWP----EK 411

Query: 289 LRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNAL 348
           +R L+L +  +     +     + L +LD+SNNN            LP L  L IS N L
Sbjct: 412 MRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKL 463

Query: 349 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397
             ++P +      L ++ +S N L   +P+ +     +L+ + L  N  
Sbjct: 464 K-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 47/253 (18%), Positives = 82/253 (32%), Gaps = 34/253 (13%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEG 418
             + D  +   T  IP  L      ++SL LS N    +            NL+ L L+ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKS 59

Query: 419 NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL-EGPIPVEF 477
           +        +      LE L L++N LS     W G L+ L+++ +  N      +   F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 478 CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537
             L  LQ L I +      +                        R  F    SL  L++ 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIR-----------------------RIDFAGLTSLNELEIK 156

Query: 538 YNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL 597
              L    S  +  +  + HL L  +     + +    L+ ++ L+L + +L       L
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 598 DNTTLHESYNNSS 610
               +       +
Sbjct: 217 PVDEVSSPMKKLA 229

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 36/223 (16%), Positives = 84/223 (37%), Gaps = 26/223 (11%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASI--FPSLK 59
                +  + + ++    +  +     +  +LE+L L  + +    L++ A    +PSL+
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 60  NLSMIGCEVNGLVRGQG-FPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFG 117
            L +    +  + +        K+L  LD+       +  S      +    +++L+L  
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-----QWPEKMRFLNL-- 417

Query: 118 SILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS 177
                +S+ I     C    L+VL+++ N+L  S       +  L+ L +S N+L    +
Sbjct: 418 -----SSTGIRVVKTCIPQTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK---T 465

Query: 178 SSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
                    +  + +S N  +  +    F   + L+  +   N
Sbjct: 466 LPDASLFPVLLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 44/197 (22%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
           G++PSL TL LS N+   +    + L    NL  L +  ++ H         +  S +  
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--------PMPDSCQWP 409

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
                              + +  L++       +T    +      +L+ L +  + L 
Sbjct: 410 -------------------EKMRFLNLS------STGIRVVKTCIPQTLEVLDVSNNNLD 444

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
           + S          L  LQ L I+ N L+ +LP   +    L ++ +S NQL  S+     
Sbjct: 445 SFSLF--------LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIF 493

Query: 182 VHLTSIEELYLSNNHFQ 198
             LTS+++++L  N + 
Sbjct: 494 DRLTSLQKIWLHTNPWD 510

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (317), Expect = 7e-32
 Identities = 77/363 (21%), Positives = 130/363 (35%), Gaps = 34/363 (9%)

Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
              L       +    +   +      + S+  L V+  ++    S   + +LT++E L 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA---SIQGIEYLTNLEYLN 72

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
           L+ N       + P  N  +L + Y   N+I  +I+   +LT     L  L L     D 
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT----NLRELYL---NEDN 121

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
                 L +   +  ++L       +     L N T L  L++    +      PI +  
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIANLT 177

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
            L  L ++ N      P+     L SL      +N +    P    NM  L  L + NN 
Sbjct: 178 DLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232

Query: 372 LTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK 431
           +T   P   +     L  L +  N +     +   +LT L+ L +  N         L+ 
Sbjct: 233 ITDLSP---LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
              L  LFLNNN L  +    +G LT L  + + +NH+    P     L  +   D ++ 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 492 NIS 494
            I 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (290), Expect = 3e-28
 Identities = 80/428 (18%), Positives = 148/428 (34%), Gaps = 84/428 (19%)

Query: 162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNE 221
              L      +       P   L       L        ++ E       +        +
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAGEK 55

Query: 222 INAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTW 281
           +        S+      +  L+                   +LEY++L+  ++    P  
Sbjct: 56  V-------ASIQG----IEYLT-------------------NLEYLNLNGNQITDISP-- 83

Query: 282 LLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL 341
            L N  KL  L +  + +       + +   L  L ++ +N     P+     L  ++SL
Sbjct: 84  -LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLAN---LTKMYSL 137

Query: 342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHM 401
           N+  N    S  S   NM  L  L ++ + +    P   +    +L SL+L+ N +E   
Sbjct: 138 NLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIED-- 191

Query: 402 FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQH 461
            S   +LT+L +     N      P  ++    L  L + NN ++   P  L NL++L  
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 462 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLK 521
           + +  N +          L  L++L++  N IS    S  + LS                
Sbjct: 248 LEIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLS---------------- 287

Query: 522 RGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 581
                    L +L L+ N+L     + + GL+ L+ L L  N++    P  L  L+++  
Sbjct: 288 --------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337

Query: 582 LDLSNNSL 589
            D +N  +
Sbjct: 338 ADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (285), Expect = 1e-27
 Identities = 70/332 (21%), Positives = 124/332 (37%), Gaps = 26/332 (7%)

Query: 264 LEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNF 323
                L    +         E    + +L +  + +       I     L  L+++ N  
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQI 78

Query: 324 RGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG 383
               P+     L  L +L I  N +  +  S+  N+  L+ L L+ ++++   P   +  
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 443
              + SL L  N     + S   N+T L +L +  +      P  ++    L  L LN N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHP 503
            +    P  L +LT L +     N +    P     +  L  L I +N I+   P     
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS 243

Query: 504 LSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563
             +  + +  N +          +   L  L++  N+++ +IS  ++ LSQL+ L L +N
Sbjct: 244 -QLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNN 297

Query: 564 NLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595
            L  E    +  L  L  L LS N +    PL
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 7e-27
 Identities = 73/392 (18%), Positives = 147/392 (37%), Gaps = 47/392 (11%)

Query: 7   LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGC 66
             TL         I        +        L  +S+      +       L++++ +  
Sbjct: 2   AATLATLPAPINQIFP----DADLAEGIRAVLQKASV------TDVVTQEELESITKLVV 51

Query: 67  EVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSR 126
               +   QG  +  +LE+L++ G  I   +        ++  L  L +     GTN   
Sbjct: 52  AGEKVASIQGIEYLTNLEYLNLNGNQITDISPL-----SNLVKLTNLYI-----GTNKIT 101

Query: 127 ILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 186
            +   L +L +L+ L +  +++    P  LAN+T +  L++ +N     +S  PL ++T 
Sbjct: 102 DIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTG 156

Query: 187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSS 246
           +  L ++ +  +    + P  N + L S   + N+I  +I+   SLT     L   +   
Sbjct: 157 LNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQIE-DISPLASLT----SLHYFTAYV 208

Query: 247 GYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLP 306
                      + +   L  + + + K+    P   L N ++L  L +  + +       
Sbjct: 209 NQITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN--A 260

Query: 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366
           +    +L ML++ +N       +     L  L SL ++ N L        G +  L  L 
Sbjct: 261 VKDLTKLKMLNVGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 367 LSNNHLTGEIPEHLVVGCVNLESLALSNNSLE 398
           LS NH+T   P   +     ++S   +N  ++
Sbjct: 318 LSQNHITDIRP---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 27/221 (12%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
            +   LN L ++ +   D+      + N T+L  L+L+ +   I  +  +A    SL +L
Sbjct: 152 SNMTGLNYLTVTESKVKDV----TPIANLTDLYSLSLNYN--QIEDISPLA----SLTSL 201

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
                 VN +       +   L  L +    I   +        ++  L +L +  + + 
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPL-----ANLSQLTWLEIGTNQI- 255

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
              S I    +  L  L++LN+  N +       L N++ L  L +++NQL        +
Sbjct: 256 ---SDI--NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED-MEVI 307

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
             LT++  L+LS NH      + P  + S++ S    N  I
Sbjct: 308 GGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 62/294 (21%), Positives = 114/294 (38%), Gaps = 39/294 (13%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
            +   L  LY+ +N  TDI      L N TNL  L L+  ++      S  S   +L  +
Sbjct: 85  SNLVKLTNLYIGTNKITDI----SALQNLTNLRELYLNEDNI------SDISPLANLTKM 134

Query: 62  SMIGCEVNGLVRG-QGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
             +    N  +       +   L +L +  + +   T        ++  L  LSL  + +
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI-----ANLTDLYSLSLNYNQI 189

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
              S       L SL  L       N +    P  +ANMT L  L + +N++T     SP
Sbjct: 190 EDISP------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT---DLSP 238

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
           L +L+ +  L +  N       +    + ++LK     +N+I+ +I+  ++L+    QL+
Sbjct: 239 LANLSQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGSNQIS-DISVLNNLS----QLN 290

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
            L L++         + +    +L  + LS   +    P   L + +K+     
Sbjct: 291 SLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADF 340

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (304), Expect = 7e-30
 Identities = 64/311 (20%), Positives = 114/311 (36%), Gaps = 22/311 (7%)

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
           L+ +     + +   +    F     +     ++   N+  R  +P  + D    +  LN
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEG 399
           ++   ++     +F     +Q L +  N +   +P H+      L  L L  N   SL  
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
            +F    N   L  L +  N+       +      L+ L L++N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQ 519
            H  +  N L             ++ LD S N+I+         L    + L  N L   
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVEL--TILKLQHNNLT-- 239

Query: 520 LKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 579
                  N   LV +DLSYN L   +      + +L  L + +N L   + +    +  L
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 580 QLLDLSNNSLH 590
           ++LDLS+N L 
Sbjct: 298 KVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (290), Expect = 4e-28
 Identities = 70/356 (19%), Positives = 138/356 (38%), Gaps = 24/356 (6%)

Query: 236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLV 295
           +     + +     D +   + +   +  + V   +  M  + P  LL++  ++  L+L 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 296 NDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS 355
           +  +             +  L +  N  R ++P  +   +P L  L +  N L       
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415
           F N   L  L +SNN+L   I +       +L++L LS+N L     S    + +L    
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHAN 192

Query: 416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV 475
           +  N        +L+    +E L  ++NS++  +         L  + +  N+L      
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW 243

Query: 476 EFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534
                  L  +D+S N +   +   F  +  +E++++S N L             +L  L
Sbjct: 244 -LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVL 300

Query: 535 DLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
           DLS+N L  ++        +L +L L HN++     ++L   + L+ L LS+N   
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (274), Expect = 5e-26
 Identities = 79/409 (19%), Positives = 143/409 (34%), Gaps = 50/409 (12%)

Query: 128 LDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 187
           +D  L        ++I          +    + + +I+   ++ +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 188 EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSG 247
           E L L++   +  I    F     ++  Y   N I                         
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------------- 107

Query: 248 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPI 307
                + P    +   L  + L    ++   P  +  N  KL  LS+ N++L        
Sbjct: 108 -----LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 308 HSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367
            +   L  L +S+N    H+ +    ++PSLF  N+S N L     S+      ++ LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQ 427
           S+N +   +   +    V L  L L +N+L     +   N   L  + L  N     +  
Sbjct: 213 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 428 SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 487
              K   LE L+++NN L   +  +   +  L+ + +  NHL   +     Q D L+ L 
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324

Query: 488 ISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
           +  N+I     S  H L  + + LS N       R  F N       D 
Sbjct: 325 LDHNSIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (258), Expect = 6e-24
 Identities = 70/425 (16%), Positives = 146/425 (34%), Gaps = 69/425 (16%)

Query: 85  HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIA 144
           H+DM+   +      +     ++ + K ++   S +     ++    L S   +++LN+ 
Sbjct: 27  HIDMQTQDVYFGFEDI-----TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLN 77

Query: 145 YNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLE 204
              +     +  A   +++ L +  N +   +      ++  +  L L  N     +   
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRG 135

Query: 205 PFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDL 264
            F N  +L +    NN +                              I          L
Sbjct: 136 IFHNTPKLTTLSMSNNNLER----------------------------IEDDTFQATTSL 167

Query: 265 EYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFR 324
           + + LS  ++       L+ +   L   ++  + L       +     +  LD S+N+  
Sbjct: 168 QNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEELDASHNSIN 218

Query: 325 GHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGC 384
             +    G V   L  L +  N L  +  +   N   L  +DLS N L  +I  H  V  
Sbjct: 219 -VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKM 271

Query: 385 VNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 443
             LE L +SNN L     +     +  L+ L L  NH +  + ++  +   LE L+L++N
Sbjct: 272 QRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHP 503
           S+   +   L     L+++ +  N  +             +  +++   +  +   C   
Sbjct: 329 SIV-TLK--LSTHHTLKNLTLSHNDWD-----CNSLRALFR--NVARPAVDDADQHCKID 378

Query: 504 LSVEQ 508
             +E 
Sbjct: 379 YQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 78/420 (18%), Positives = 132/420 (31%), Gaps = 112/420 (26%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +  +   +   ++    +  A   L +F  +E L L  + L I  + + A          
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAAL--LDSFRQVELLNL--NDLQIEEIDTYA---------- 88

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
                         F +  +++ L M    I         + +++P L  L L       
Sbjct: 89  --------------FAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER----- 126

Query: 123 NSSRILDRGL-CSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
           N    L RG+  +   L  L+++ N+L           TSL+ L +SSN+LT       L
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDL 182

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241
             + S+    +S N       L        ++   A +N IN        +  P      
Sbjct: 183 SLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNV--- 226

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 301
                                +L  + L H  +                           
Sbjct: 227 ---------------------ELTILKLQHNNLT----------------------DTAW 243

Query: 302 PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKF 361
               P      L  +D+S N     I       +  L  L IS N L  ++      +  
Sbjct: 244 LLNYP-----GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421
           L++LDLS+NHL   +  +       LE+L L +NS+     S       L+ L L  N +
Sbjct: 297 LKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 68/419 (16%), Positives = 126/419 (30%), Gaps = 114/419 (27%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
            SF  +  L L+     +I T          ++ L +  +        +I  + P +   
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFN--------AIRYLPPHV--- 112

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
                          F +   L  L +E   +                            
Sbjct: 113 ---------------FQNVPLLTVLVLERNDL---------------------------- 129

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
              S +      +   L  L+++ N+L           TSL+ L +SSN+LT       L
Sbjct: 130 ---SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDL 182

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQ-LS 240
             + S+    +S N       L        ++   A +N IN        +  P    L+
Sbjct: 183 SLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNVELT 229

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
            L L     +      +L +   L  VDLS+ ++  +          +L +L +      
Sbjct: 230 ILKLQ---HNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI------ 279

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
                             SNN     + +     +P+L  L++S N L   +  +     
Sbjct: 280 ------------------SNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN 419
            L+ L L +N +   +          L++L LS+N       S      N+    ++  
Sbjct: 319 RLENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 36/231 (15%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDS------------SSLHIS--LLQS 50
            SL  L LSSN  T +     +L    +L +  +                L  S   +  
Sbjct: 165 TSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219

Query: 51  I-ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPS 109
           +   +   L  L +     N L       ++  L  +D+    +      +      M  
Sbjct: 220 VRGPVNVELTILKLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQR 273

Query: 110 LKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS 169
           L+ L +       N    L+     +  L+VL++++N L   +         L  L +  
Sbjct: 274 LERLYISN-----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 170 NQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
           N +     +  L    +++ L LS+N +        F N +R     AD +
Sbjct: 328 NSIV----TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 43/203 (21%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
                L  L L  NN TD A     L N+  L  + L  + L                  
Sbjct: 223 PVNVELTILKLQHNNLTDTAW----LLNYPGLVEVDLSYNELEK---------------- 262

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
                     +    F   + LE L +    +      L + G+ +P+LK L L      
Sbjct: 263 ----------IMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH---- 304

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
            N    ++R       L+ L + +N +  +L   L+   +L+ L +S N    +   +  
Sbjct: 305 -NHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALF 360

Query: 182 VHLTSIEELYLSNNHFQIPISLE 204
            ++     +  ++ H +I   LE
Sbjct: 361 RNVARP-AVDDADQHCKIDYQLE 382

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 9e-29
 Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 23/283 (8%)

Query: 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSN 394
                   ++ ++L  ++ S   +   ++ LDLS N L+ +I    +     LE L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 395 NSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLG 454
           N L  +      +L+ LR L L  N+      Q L     +E L   NN++S ++     
Sbjct: 68  NVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CS 117

Query: 455 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG-SLPSCFHPL-SVEQVHLS 512
                ++I +  N +     ++      +Q LD+  N I   +         ++E ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ 572
            N ++  +K    F    L TLDLS N+L   +       + ++ + L +N L   +   
Sbjct: 178 YNFIY-DVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 573 LCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQ 615
           L     L+  DL  N  H     C              ++ KQ
Sbjct: 233 LRFSQNLEHFDLRGNGFH-----CGTLRDFFSKNQRVQTVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 54/339 (15%), Positives = 96/339 (28%), Gaps = 75/339 (22%)

Query: 158 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYA 217
           N    +I  V+ + L     +S      +++EL LS N                      
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------------------- 44

Query: 218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH--IKMN 275
                                LS++S              L     LE ++LS   +   
Sbjct: 45  --------------------PLSQIS-----------AADLAPFTKLELLNLSSNVLYET 73

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL 335
            +      E+ + LR L L N+ +       +     +  L  +NNN    +        
Sbjct: 74  LDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR---G 119

Query: 336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395
               ++ ++ N +        G    +Q LDL  N +       L      LE L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGN 455
            +             L+ L L  N     +         +  + L NN L   I + L  
Sbjct: 180 FIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 456 LTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
              L+H  +  N       +        ++  ++   + 
Sbjct: 236 SQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.0 bits (224), Expect = 7e-20
 Identities = 44/329 (13%), Positives = 118/329 (35%), Gaps = 26/329 (7%)

Query: 264 LEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNF 323
            +   ++   +  +    L ++   +++L L  + L       +    +L +L++S+N  
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 324 RGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG 383
                 ++   L +L +L+++ N +             ++ L  +NN+++  +       
Sbjct: 71  Y-ETL-DLES-LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--- 118

Query: 384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG-EIPQSLSKCFVLEGLFLNN 442
               +++ L+NN +           + +++L L+ N        +  +    LE L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 502
           N +   +   +    +L+ + +  N L   +  EF     +  + + +N +   +     
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 503 PL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILG 561
              ++E   L  N  H    R  F  +  + T+     +    ++   +    +  L   
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHY 291

Query: 562 HNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
                 ++P         +L+ L ++  H
Sbjct: 292 GAYCCEDLP----APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 6e-19
 Identities = 69/363 (19%), Positives = 126/363 (34%), Gaps = 53/363 (14%)

Query: 100 LQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANM 159
           +  I ++    K   +  S L     + L     S  +++ L+++ N L       LA  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
           T L +L++SSN L     +  L  L+++  L L+NN+      ++       +++ +A N
Sbjct: 58  TKLELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN 108

Query: 220 NEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 279
           N                  +SR+S S G G               + + L++ K+     
Sbjct: 109 N-----------------NISRVSCSRGQG--------------KKNIYLANNKIT-MLR 136

Query: 280 TWLLENNTKLRQLSLVNDSLGG-PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSL 338
                  ++++ L L  + +    F     S   L  L++  N     +  ++      L
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKL 193

Query: 339 FSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLE 398
            +L++S N L   +   F +   +  + L NN L   I + L     NLE   L  N   
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFH 250

Query: 399 GHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTR 458
                R+F   N R   +          Q+  +C V                 +   L  
Sbjct: 251 -CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 459 LQH 461
           L H
Sbjct: 310 LGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 25/166 (15%), Positives = 63/166 (37%), Gaps = 13/166 (7%)

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
           EI Q+ ++    +   + ++SL   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543
           ++L++S N +           ++  + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 544 NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            +S          ++ L +N +     +     +++Q LDL  N +
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 41/235 (17%), Positives = 88/235 (37%), Gaps = 31/235 (13%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSL-HISLLQSI--------- 51
             F  L  L LSSN   +      +L + + L  L L+++ +  + +  SI         
Sbjct: 55  APFTKLELLNLSSNVLYET----LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110

Query: 52  -----ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGES 106
                 S     KN+ +   ++  L           +++LD++   I    +F ++   S
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEID-TVNFAELAA-S 167

Query: 107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILD 166
             +L++L+L       N    +  G      L+ L+++ N L   +     +   +  + 
Sbjct: 168 SDTLEHLNLQY-----NFIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 167 VSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNE 221
           + +N+L   I  + L    ++E   L  N F      + F  + R+++      +
Sbjct: 221 LRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 42/293 (14%), Positives = 93/293 (31%), Gaps = 36/293 (12%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
                  ++ ++      +     +  N++ L L  + L     Q  A+       L ++
Sbjct: 10  NRYKIEKVTDSSLKQALASL--RQSAWNVKELDLSGNPLS----QISAADLAPFTKLELL 63

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
               N L          +L  LD       LN +++Q +    PS++ L          +
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLD-------LNNNYVQELLV-GPSIETLHA-------AN 108

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 184
           + I           + + +A N +           + ++ LD+  N++     +      
Sbjct: 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 185 TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN---EINAEITQSHSLTAPNFQLSR 241
            ++E L L  N       ++     ++LK+    +N    +  E   +  +T     L  
Sbjct: 169 DTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT--WISLRN 223

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
             L           K L    +LE+ DL     +          N +++ ++ 
Sbjct: 224 NKLVL-------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 27/137 (19%)

Query: 477 FCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
               +  +I  ++D+++  +L S                              ++  LDL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAW------------------------NVKELDL 41

Query: 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC 596
           S N L+   +  +   ++L  L L  N L     + L  L+ L+ LDL+NN +   + + 
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVG 98

Query: 597 LDNTTLHESYNNSSSLD 613
               TLH + NN S + 
Sbjct: 99  PSIETLHAANNNISRVS 115

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (281), Expect = 2e-26
 Identities = 68/479 (14%), Positives = 138/479 (28%), Gaps = 60/479 (12%)

Query: 151 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHS 210
           ++     N    +I  V+ + L     +S      +++EL LS N     IS       +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFT 58

Query: 211 RLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLS 270
           +L+     +N +  E     SL+                              L  +DL+
Sbjct: 59  KLELLNLSSNVLY-ETLDLESLST-----------------------------LRTLDLN 88

Query: 271 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVE 330
           +  +        L     +  L   N+++    ++     +    + ++NN       ++
Sbjct: 89  NNYVQE------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLD 139

Query: 331 IGDVLPSLFSLNISMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES 389
            G     +  L++ +N +D  +      +   L+ L+L  N +  ++   +      L++
Sbjct: 140 EGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKT 195

Query: 390 LALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS-G 447
           L LS+N L        F +   + W+ L  N  V  I ++L     LE   L  N    G
Sbjct: 196 LDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 448 KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--- 504
            +  +     R+Q +             E C +    +                  L   
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 505 -SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563
              E   LS      +       N      +D    +    I            L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 564 NLEGEVP---VQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEIS 619
            L+ +V        +L+      +    L  +         L         +  + +  
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (280), Expect = 3e-26
 Identities = 81/518 (15%), Positives = 161/518 (31%), Gaps = 75/518 (14%)

Query: 103 IGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSL 162
           I ++    K   +  S L     + L     S  +++ L+++ N L       LA  T L
Sbjct: 5   IKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
            +L++SSN L     +  L  L+++  L L+NN+      ++       +++ +A NN  
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANN-- 109

Query: 223 NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL 282
                           +SR+S S G G               + + L++ K+        
Sbjct: 110 ---------------NISRVSCSRGQG--------------KKNIYLANNKIT-MLRDLD 139

Query: 283 LENNTKLRQLSLVNDSLGG-PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL 341
               ++++ L L  + +    F     S   L  L++  N     +  ++      L +L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTL 196

Query: 342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHM 401
           ++S N L   +   F +   +  + L NN L   I + L     NLE   L  N      
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFH-CG 252

Query: 402 FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQH 461
             R+F   N R   +          Q+  +C V                 +   L  L  
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL-- 310

Query: 462 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLK 521
                            +     +L    +          +     ++   K      + 
Sbjct: 311 -----------------KRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVI 352

Query: 522 RGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL 581
                   + +TL+     L+  +S+     ++L   +        E+     + + LQL
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQL 411

Query: 582 LD-LSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEI 618
           L  +        +            ++     + Q   
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 53/422 (12%), Positives = 125/422 (29%), Gaps = 44/422 (10%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
                  ++ ++      +     +  N++ L L  + L     Q  A+       L ++
Sbjct: 10  NRYKIEKVTDSSLKQALASL--RQSAWNVKELDLSGNPLS----QISAADLAPFTKLELL 63

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
               N L          +L  LD       LN +++Q +    PS++ L         N+
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLD-------LNNNYVQELLV-GPSIETLHAAN-----NN 110

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 184
              +          + + +A N +           + ++ LD+  N++     +      
Sbjct: 111 ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 185 TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN---EINAEITQSHSLTAPNFQLSR 241
            ++E L L  N       ++     ++LK+    +N    +  E   +  +T     L  
Sbjct: 169 DTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT--WISLRN 223

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 301
             L           K L    +LE+ DL     +          N +++ ++    ++  
Sbjct: 224 NKLVL-------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKK 274

Query: 302 PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS----IPSSFG 357
                        +           +P    D L +L     ++ +  GS    +     
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 358 NMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417
           N    + +D         + + + +      +L     +L+  + +       L     +
Sbjct: 334 NQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 418 GN 419
             
Sbjct: 393 AV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 19/225 (8%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
            G    +  L L  N    +  A     +   LE+L L      I  ++     F  LK 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNL--QYNFIYDVKGQVV-FAKLKT 195

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSI 119
           L +   ++  +  G  F     +  + +    L+ +  +          +L++  L G+ 
Sbjct: 196 LDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLVLIEKAL-----RFSQNLEHFDLRGNG 248

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
               + R            +V  +A   ++          T   +    +       +  
Sbjct: 249 FHCGTLRDFFSKN-----QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 180 P--LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
              L+ L   E   LS    +         N +R +   A   + 
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 7e-26
 Identities = 72/325 (22%), Positives = 110/325 (33%), Gaps = 48/325 (14%)

Query: 286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISM 345
           N     L++    L     LP      +  L I +NN    +P         L +L +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 346 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRN 405
           N L  S+P     +  L I      HL              L  L +  N L     S  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT----SLP 137

Query: 406 FNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMP 465
                L+ L +  N     +P   S+   L  L+  NN L+  +P     L  L    + 
Sbjct: 138 VLPPGLQELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELS---VS 189

Query: 466 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTF 525
            N L   +P    +   L  L   +N ++ SLP+   P  ++++ +S N L       + 
Sbjct: 190 DNQLAS-LPTLPSE---LYKLWAYNNRLT-SLPA--LPSGLKELIVSGNRL------TSL 236

Query: 526 FNS-YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDL 584
                 L  L +S NRL    +      S L  L +  N L   +P  L  L+    ++L
Sbjct: 237 PVLPSELKELMVSGNRL----TSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 585 SNNSLHGSIPLCLDNTTLHESYNNS 609
             N L       L   T    Y+  
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 4e-21
 Identities = 70/355 (19%), Positives = 118/355 (33%), Gaps = 55/355 (15%)

Query: 133 CSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYL 192
           C      VLN+  + L  +LP CL     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 193 SNNHFQ-IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
           S N    +P+          L  F      + A  +    L     QL+ L +       
Sbjct: 89  SGNQLTSLPVLPP---GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP---- 141

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
                       L+ + +S  ++    P       ++L +L   N+ L     LP     
Sbjct: 142 -----------GLQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPS 181

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
            L  L +S+N     +P    + L  L++ N  + +L             L+ L +S N 
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNR 232

Query: 372 LTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK 431
           LT  +P         L+ L +S N L     S     + L  L +  N     +P+SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL 486
                 + L  N LS +  + L  +T       P    +        +   L + 
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.6 bits (209), Expect = 3e-17
 Identities = 61/333 (18%), Positives = 104/333 (31%), Gaps = 56/333 (16%)

Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
               L+ L ++ N L  SLP     +  L I       L            + + +L++ 
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIF 129

Query: 194 NNHF-QIPISLEPFFNHSRLKSFYADNNEIN---AEITQSHSLTAPNFQLSRLSLSSGYG 249
            N    +P+          L+     +N++    A  ++   L A N QL+ L +     
Sbjct: 130 GNQLTSLPVLP------PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS-- 181

Query: 250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHS 309
                         L+ + +S  ++    PT      ++L +L   N+ L     LP   
Sbjct: 182 -------------GLQELSVSDNQLA-SLPTLP----SELYKLWAYNNRLT---SLP-AL 219

Query: 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSN 369
              L  L +S N     +PV        L  L +S N L  S+P        L  L +  
Sbjct: 220 PSGLKELIVSGNRLT-SLPVLPS----ELKELMVSGNRLT-SLPMLPSG---LLSLSVYR 270

Query: 370 NHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSL 429
           N LT  +PE L +   +  ++ L  N L          +T+          F      + 
Sbjct: 271 NQLT-RLPESL-IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

Query: 430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462
            +   L       + L            R    
Sbjct: 329 RETRALH--LAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 57/324 (17%), Positives = 102/324 (31%), Gaps = 70/324 (21%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
              + TL +  NN T +            L  L +  + L      S+  + P L  LS+
Sbjct: 60  PAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLT-----SLPVLPPGLLELSI 108

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTN 123
               +  L      P    L  L        +  + L  +    P L+ LS+       N
Sbjct: 109 FSNPLTHL---PALP--SGLCKLW-------IFGNQLTSLPVLPPGLQELSVSD-----N 151

Query: 124 SSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 183
               L      L  L   N   N L  SLP      + L+ L VS NQL  S+ + P   
Sbjct: 152 QLASLPALPSELCKLWAYN---NQLT-SLP---MLPSGLQELSVSDNQLA-SLPTLP--- 200

Query: 184 LTSIEELYLSNNHF-QIPISLEPFFNHSRLKSFYADNNEIN---AEITQSHSLTAPNFQL 239
            + + +L+  NN    +P         S LK      N +       ++   L     +L
Sbjct: 201 -SELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 253

Query: 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
           + L +                   L  + +   ++    P  L+ + +    ++L  + L
Sbjct: 254 TSLPMLPS---------------GLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPL 296

Query: 300 GGPFQLPIHSHKRLGMLDISNNNF 323
               +  + + + +      +   
Sbjct: 297 S---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 55/322 (17%), Positives = 95/322 (29%), Gaps = 50/322 (15%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISL------------LQS 50
             P L TL +S N  T +            L   +   + L                L S
Sbjct: 79  LPPELRTLEVSGNQLTSLP---VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 135

Query: 51  IASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDME--------GALIALNTSF--L 100
           +  + P L+ LS+   ++  L           L   + +          L  L+ S   L
Sbjct: 136 LPVLPPGLQELSVSDNQLASL--PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL 193

Query: 101 QIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMT 160
             +      L  L  +      N    L         L+ L ++ N L  SLP      +
Sbjct: 194 ASLPTLPSELYKLWAYN-----NRLTSLPALPSG---LKELIVSGNRLT-SLP---VLPS 241

Query: 161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADN 219
            L+ L VS N+LT S+        + +  L +  N    +P   E   + S   +   + 
Sbjct: 242 ELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLTRLP---ESLIHLSSETTVNLEG 293

Query: 220 NEINAEITQSH-SLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 278
           N ++    Q+   +T+       +      G          H    +++  +        
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 279 PTW-LLENNTKLRQLSLVNDSL 299
             W +          SL  D L
Sbjct: 354 DRWHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 35/235 (14%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
                L  L+  +N  T +          + L+ L++  + L      S+ ++   L  L
Sbjct: 158 ALPSELCKLWAYNNQLTSLPM------LPSGLQELSVSDNQL-----ASLPTLPSELYKL 206

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
                 +  L           L+ L        ++ + L  +      LK L + G    
Sbjct: 207 WAYNNRLTSLP-----ALPSGLKELI-------VSGNRLTSLPVLPSELKELMVSG---- 250

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
            N    L      L     L++  N L   LP  L +++S   +++  N L+   +   L
Sbjct: 251 -NRLTSLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQAL 304

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
             +TS      S    +  ++       +R     A +  + A   +       +
Sbjct: 305 REITSAPG--YSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 530 SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
               L++  + L   + D +   + ++ L++  NNL   +P       +L+ L++S N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQL 93

Query: 590 HGSIPLCLDN-TTLHESYNNSSSL 612
             S+P+       L    N  + L
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHL 116

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 6e-25
 Identities = 55/286 (19%), Positives = 101/286 (35%), Gaps = 28/286 (9%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           +  S+      +P ++    P    L++  N +       F N+K L  L L NN ++ +
Sbjct: 36  VQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-K 90

Query: 376 IPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKC 432
           I        V LE L LS N    L   M         L+ L++  N          +  
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVFNGL 144

Query: 433 FVLEGLFLNNNSLSGKI--PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 490
             +  + L  N L            + +L +I +   ++   IP        L  L +  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDG 201

Query: 491 NNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV 549
           N I+    +    L ++ ++ LS N +   +  G+  N+  L  L L+ N+L   +   +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 550 DGLSQLSHLILGHNNLEG------EVPVQLCKLNQLQLLDLSNNSL 589
                +  + L +NN+          P    K      + L +N +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 7e-20
 Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 17/239 (7%)

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
            +L  L +S N  +  +P     +  +L  L +  N +     S F  +  + +++L  N
Sbjct: 100 VKLERLYLSKNQLK-ELP---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 371 HLT-GEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSL 429
            L    I      G   L  + +++ ++   +        +L  L L+GN        SL
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASL 212

Query: 430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 489
                L  L L+ NS+S      L N   L+ + +  N L   +P       ++Q++ + 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271

Query: 490 DNNISGSLPSCFHPL-------SVEQVHLSKNML-HGQLKRGTFFNSYSLVTLDLSYNR 540
           +NNIS    + F P        S   V L  N + + +++  TF   Y    + L   +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 56/295 (18%), Positives = 103/295 (34%), Gaps = 28/295 (9%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
               +LD+ +N++T  I      +L ++  L L NN     IS   F    +L+  Y   
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 220 NEINAEITQSHSLTAPNFQ-LSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH--IKMNG 276
           N++         L     + L  L +        +        + +  V+L    +K + 
Sbjct: 110 NQL-------KELPEKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLK-SS 160

Query: 277 EFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLP 336
                  +   KL  + + + ++     +P      L  L +  N     +       L 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKIT-KVDAASLKGLN 216

Query: 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN- 395
           +L  L +S N++      S  N   L+ L L+NN L  ++P  L      ++ + L NN 
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNN 274

Query: 396 --SLEGHMFSRNF---NLTNLRWLQLEGNHF-VGEIPQSLSKCF-VLEGLFLNNN 443
             ++  + F          +   + L  N     EI  S  +C  V   + L N 
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 47/253 (18%), Positives = 96/253 (37%), Gaps = 35/253 (13%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI-ASIFPSLKNLS 62
             +L+TL L +N  + I+           LE L L  +      L+ +   +  +L+ L 
Sbjct: 75  LKNLHTLILINNKISKISPGA--FAPLVKLERLYLSKNQ-----LKELPEKMPKTLQELR 127

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIAL----NTSFLQIIGESMPSLKYLSLFGS 118
           +   E+  + +   F     +  +++    +      N +F     + M  L Y+ +   
Sbjct: 128 VHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAF-----QGMKKLSYIRIAD- 180

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
                +   + +GL     L  L++  N +       L  + +L  L +S N ++ ++ +
Sbjct: 181 ----TNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDN 233

Query: 179 SPLVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF 237
             L +   + EL+L+NN    +P       +H  ++  Y  NN I+  I  +        
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYN 289

Query: 238 ----QLSRLSLSS 246
                 S +SL S
Sbjct: 290 TKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 46/227 (20%), Positives = 84/227 (37%), Gaps = 30/227 (13%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
             L  LYLS N   ++            L+ L +  +   I+ ++   S+F  L  + ++
Sbjct: 100 VKLERLYLSKNQLKELPEKM-----PKTLQELRVHEN--EITKVR--KSVFNGLNQMIVV 150

Query: 65  GCEVNGL----VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
               N L    +    F   K L ++ +    I        I     PSL  L L G+ +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------TIPQGLPPSLTELHLDGNKI 204

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
               +++    L  L +L  L +++N +       LAN   LR L +++N+L   +    
Sbjct: 205 ----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG- 258

Query: 181 LVHLTSIEELYLSNNHFQ-IPIS----LEPFFNHSRLKSFYADNNEI 222
           L     I+ +YL NN+   I  +           +        +N +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 55/271 (20%), Positives = 100/271 (36%), Gaps = 22/271 (8%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
            P    L L +N  T+I        N  NL  L L ++   IS +   A  F  L  L  
Sbjct: 51  PPDTALLDLQNNKITEIKDGD--FKNLKNLHTLILINN--KISKISPGA--FAPLVKLER 104

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTN 123
           +    N L         K+L+ L +    I   T   + +   +  +  + L  + L   
Sbjct: 105 LYLSKNQLKELPE-KMPKTLQELRVHENEI---TKVRKSVFNGLNQMIVVELGTNPL--K 158

Query: 124 SSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 183
           SS I +     +  L  + IA  ++  ++P  L    SL  L +  N++T  + ++ L  
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKG 214

Query: 184 LTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN---EINAEITQSHSLTAPNFQLS 240
           L ++ +L LS N     +      N   L+  + +NN   ++   +     +      L 
Sbjct: 215 LNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ--VVYLH 271

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH 271
             ++S+   + F  P +   +     V L  
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (271), Expect = 6e-25
 Identities = 84/485 (17%), Positives = 160/485 (32%), Gaps = 50/485 (10%)

Query: 128 LDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 187
           +D  L        ++I          +    + + +I+   ++ +   + ++ L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 188 EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSG 247
           E L L++   +  I    F     ++  Y   N I                         
Sbjct: 78  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------------- 113

Query: 248 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPI 307
                + P    +   L  + L    ++   P  +  N  KL  LS+ N++L        
Sbjct: 114 -----LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 308 HSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL 367
            +   L  L +S+N    H+ +    ++PSLF  N+S N L     S+      ++ LD 
Sbjct: 168 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 218

Query: 368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQ 427
           S+N +   +   +    V L  L L +N+L     +   N   L  + L  N     +  
Sbjct: 219 SHNSIN-VVRGPV---NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 428 SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 487
              K   LE L+++NN L   +  +   +  L+ + +  NHL   +     Q D L+ L 
Sbjct: 273 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 330

Query: 488 ISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD 547
           +  N+I     S  H L    + LS N       R  F N       D   +       +
Sbjct: 331 LDHNSIVTLKLSTHHTLK--NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE 388

Query: 548 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYN 607
                 +     L        +   + K+ + Q    + ++++    L    T       
Sbjct: 389 HGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPL 448

Query: 608 NSSSL 612
             +  
Sbjct: 449 QGNEQ 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.1 bits (239), Expect = 5e-21
 Identities = 75/464 (16%), Positives = 155/464 (33%), Gaps = 39/464 (8%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRIL 165
           ++ + K ++   S +     ++    L S   +++LN+    +     +  A   +++ L
Sbjct: 49  TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 166 DVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAE 225
            +  N +   +      ++  +  L L  N     +    F N  +L +    NN +   
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-- 160

Query: 226 ITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN 285
                        L  L LSS                 L + ++S+  ++       L  
Sbjct: 161 -RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLS------TLAI 209

Query: 286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISM 345
              + +L   ++S+     +    +  L +L + +NN        +    P L  +++S 
Sbjct: 210 PIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSY 263

Query: 346 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRN 405
           N L+  +   F  M+ L+ L +SNN L   +  +       L+ L LS+N L  H+    
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG-QPIPTLKVLDLSHNHLL-HVERNQ 320

Query: 406 FNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG-KIPRWLGNLTRLQHIMM 464
                L  L L+ N  V     +      L+ L L++N      +     N+ R      
Sbjct: 321 PQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377

Query: 465 PKN-----HLEGPIPVEFCQLDWLQ--ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLH 517
            ++      LE  +  +     +L   +  I+  ++   +       S      S   L 
Sbjct: 378 DQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLS 437

Query: 518 GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILG 561
             + +           L+   N L   +    +   Q   L+ G
Sbjct: 438 HYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 6e-17
 Identities = 100/599 (16%), Positives = 190/599 (31%), Gaps = 110/599 (18%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +  +   +   ++    +  A   L +F  +E L L  + L I  + + A          
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAAL--LDSFRQVELLNL--NDLQIEEIDTYA---------- 94

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
                         F +  +++ L M    I         + +++P L  L L       
Sbjct: 95  --------------FAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER----- 132

Query: 123 NSSRILDRGL-CSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
           N    L RG+  +   L  L+++ N+L           TSL+ L +SSN+LT       L
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDL 188

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQ-LS 240
             + S+    +S N       L        ++   A +N IN        +  P    L+
Sbjct: 189 SLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNVELT 235

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
            L L     +      +L +   L  VDLS+ ++  +          +L +L +      
Sbjct: 236 ILKLQ---HNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI------ 285

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
                             SNN     + +     +P+L  L++S N L   +  +     
Sbjct: 286 ------------------SNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFD 324

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH 420
            L+ L L +N +   +          L++L LS+N       S      N+    ++   
Sbjct: 325 RLENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDAD 378

Query: 421 FVGEIPQSLSKCFVLEGL----------FLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE 470
              +I   L      +            ++   S+  K+ R  G  +    I   ++   
Sbjct: 379 QHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSH 438

Query: 471 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYS 530
                    L   + L+   N +   +      L+ EQ+   + +     +  T    Y 
Sbjct: 439 YITQQGGVPLQGNEQLEAEVNELRAEVQQ----LTNEQIQQEQLLQGLHAEIDTNLRRYR 494

Query: 531 LVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
           L    L   R + N++     L +     L              K  + + L+  N +L
Sbjct: 495 LPKDGL--ARSSDNLNKVFTHLKERQAFKLRETQARRT--EADAKQKETEDLEQENIAL 549

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 3/194 (1%)

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
            I  +L    V   + ++  +           L   + +    + +             +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 484 QILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
           ++L+++D  I       F    +++++++  N +   L    F N   L  L L  N L+
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN-TT 601
                      +L+ L + +NNLE            LQ L LS+N L       + +   
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 196

Query: 602 LHESYNNSSSLDKQ 615
            + SYN  S+L   
Sbjct: 197 ANVSYNLLSTLAIP 210

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 7e-11
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 27/219 (12%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
              PSL    +S N  +        L     +E L    S   I++++    +   L  L
Sbjct: 189 SLIPSLFHANVSYNLLS-------TLAIPIAVEELDA--SHNSINVVR--GPVNVELTIL 237

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
            +     N L       ++  L  +D+    +      +      M  L+ L +      
Sbjct: 238 KLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN---- 287

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
            N    L+     +  L+VL++++N L   +         L  L +  N +     +  L
Sbjct: 288 -NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV----TLKL 341

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
               +++ L LS+N +        F N +R     AD +
Sbjct: 342 STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 8e-25
 Identities = 82/474 (17%), Positives = 161/474 (33%), Gaps = 50/474 (10%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLC-SLVHLQVLNIAYNDLRGSLPWCLANMTSLRI 164
           S+  L+ L +       N  + LD  +      L+ L++++N L   +        +L+ 
Sbjct: 43  SLSKLRILII-----SHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKH 94

Query: 165 LDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINA 224
           LD+S N            +++ ++ L LS  H +   S+ P  + +  K           
Sbjct: 95  LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGE 153

Query: 225 EITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL-- 282
           +      L   N +   +   +     FI    +    +LE  ++  +  + +   +L  
Sbjct: 154 KE-DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 283 ---LENNTKLRQLSLVNDSLGGPFQLPI---HSHKRLGMLDISNNNFRGHIPVE----IG 332
              L+ N KL  L+L N        + I     H  +    ISN   +G +        G
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL 392
             L +L    +  +         +     + I + + +     +             L  
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDF 331

Query: 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW 452
           SNN L   +F    +LT L  L L+ N       + LSK      +              
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQL-----KELSKIA---EMTT------------ 371

Query: 453 LGNLTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNISGSLPSCFHPLSVEQVHL 511
              +  LQ + + +N +        C     L  L++S N ++ ++  C  P  ++ + L
Sbjct: 372 --QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDL 428

Query: 512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL 565
             N +   + +       +L  L+++ N+L        D L+ L  + L  N  
Sbjct: 429 HSNKIK-SIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (252), Expect = 1e-22
 Identities = 91/467 (19%), Positives = 169/467 (36%), Gaps = 55/467 (11%)

Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
           SL  L++L I++N ++            L  LD+S N+L   IS  P V+L     L LS
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCHPTVNLK---HLDLS 98

Query: 194 NNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI 253
            N F      + F N S+LK        +        +    +  L  L  + G  +   
Sbjct: 99  FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRL 313
             +    +  L  V  ++ + +                  +++ S+     L + + K +
Sbjct: 159 GLQDFNTES-LHIVFPTNKEFH-----------------FILDVSVKTVANLELSNIKCV 200

Query: 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373
              +  +        ++    L +L   NI                  +    +SN  L 
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 374 GEIP-EHLVVGCVNLESLALSNNSLEGHMFSRNF---NLTNLRWLQLEGNHFVGEIPQSL 429
           G++          +L++L++     +   F +++     +N+       +          
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILD 487
           SK      L  +NN L+  +    G+LT L+ +++  N L+    I     Q+  LQ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 488 ISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD 547
           IS N++S                            G    + SL++L++S N L   I  
Sbjct: 381 ISQNSVSYDEKK-----------------------GDCSWTKSLLSLNMSSNILTDTIFR 417

Query: 548 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
                 ++  L L  N ++  +P Q+ KL  LQ L++++N L  S+P
Sbjct: 418 --CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 73/487 (14%), Positives = 145/487 (29%), Gaps = 75/487 (15%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
              +LNI+ N +       + +++ LRIL +S N++   +  S       +E L LS+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN- 79

Query: 197 FQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPK 256
                         +L                 H        L  L LS           
Sbjct: 80  --------------KLVKI------------SCHPTV----NLKHLDLSFN--------- 100

Query: 257 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL-GGPFQLPIHSHKRLGM 315
                          + +  EF      N ++L+ L L    L         H +    +
Sbjct: 101 -----------AFDALPICKEF-----GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           L +           E  + L    + ++ +            ++    + +L  +++   
Sbjct: 145 LVLGETY----GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435
           + ++     +++ +   +N  L       N  L N+          +  +  +    F +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKL------SNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 495
             + L              +L  L    +  +    P    +     + I + + +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 496 SLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN--GNISDWVDGL 552
               C         +  S N+L          +   L TL L  N+L     I++    +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 553 SQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIPLCLDN--TTLHESYNNS 609
             L  L +  N++  +     C     L  L++S+N L  +I  CL      L    N  
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI 433

Query: 610 SSLDKQF 616
            S+ KQ 
Sbjct: 434 KSIPKQV 440

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 81/470 (17%), Positives = 152/470 (32%), Gaps = 39/470 (8%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           S   L  L +S N    +  +         LEYL L  + L             +LK+L 
Sbjct: 43  SLSKLRILIISHNRIQYLDISV--FKFNQELEYLDLSHNKLVKISCHP----TVNLKHLD 96

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
           +     + L   + F +   L+ L +             +   S+  + +L++   +L  
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTT---------HLEKSSVLPIAHLNISKVLLVL 147

Query: 123 NSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV 182
             +         L      ++            + +++   + ++  + +   +  +   
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 183 HLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL 242
           +  SI     +N                 L +   +N E              +  +   
Sbjct: 208 YFLSILAKLQTNPK---------------LSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 243 SLSS-GYGDGFIFPKFLYHQHDLEYVDLSHIKMN--GEFPTWLLENNTKLRQLSLVNDSL 299
           S+S+        F  F Y    L+ + +  +  +  G   +++ E  + +   +      
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 300 GGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD--GSIPSSFG 357
                L          LD SNN        E    L  L +L + MN L     I     
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 358 NMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417
            MK LQ LD+S N ++ +  +       +L SL +S+N L   +F        ++ L L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLH 429

Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN 467
            N     IP+ + K   L+ L + +N L          LT LQ I +  N
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 85/432 (19%), Positives = 154/432 (35%), Gaps = 35/432 (8%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
             L  L LS N    I+      H   NL++L L  ++   +L   I   F ++  L  +
Sbjct: 69  QELEYLDLSHNKLVKIS-----CHPTVNLKHLDLSFNAFD-AL--PICKEFGNMSQLKFL 120

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSL-FGSILGTN 123
           G     L +         L    +   L+   T   +   E +      SL         
Sbjct: 121 GLSTTHLEKSS-VLPIAHLNISKVL--LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 124 SSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP--- 180
              ILD  + ++ +L++ NI          + L+ +  L+     SN    +I ++    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 181 -----LVHLTSIEELYLSNNHFQIPISLEPF-FNHSRLKSFYADNNEINAEITQSHSLTA 234
                LV  T++    +SN   Q  +    F ++ + LK+        +        +  
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 235 PNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
               ++  + +   G   +            ++D S+  +  +       + T+L  L L
Sbjct: 298 IFSNMNIKNFTV-SGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLIL 355

Query: 295 VNDSLG--GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
             + L             K L  LDIS N+              SL SLN+S N L  +I
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLT 409
                    +++LDL +N +   IP+  VV    L+ L +++N   S+   +F     LT
Sbjct: 416 FRCL--PPRIKVLDLHSNKIK-SIPKQ-VVKLEALQELNVASNQLKSVPDGIFD---RLT 468

Query: 410 NLRWLQLEGNHF 421
           +L+ + L  N +
Sbjct: 469 SLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 61/361 (16%), Positives = 121/361 (33%), Gaps = 50/361 (13%)

Query: 2   GSFPSLNTLYLS--------SNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIAS 53
                 NT  L          +   D++  T      +N++ +  D+   +   + +   
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 54  IFPSLKNLSMIGCEV--NGLVRGQGFPHFKSLEHLDMEGALIA--LNTSFLQIIGESMPS 109
             P L NL++   E   N  +R        ++ +  +    +   L+       G S+ +
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 110 LKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS 169
           L    +   + G   S I +       ++ + N   +  R     C + ++    LD S+
Sbjct: 278 LSIHQVVSDVFGFPQSYIYE----IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 170 NQLTGSISSSPLVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNNEINAEITQ 228
           N LT         HLT +E L L  N  + +    E       L+      N ++ +  +
Sbjct: 334 NLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 229 SHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 288
                  +  L  L++SS      IF         ++ +DL                + K
Sbjct: 393 GDCSWTKS--LLSLNMSSNILTDTIFRCLP---PRIKVLDLH---------------SNK 432

Query: 289 LRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNAL 348
           ++ +           +L       L  L++++N  +  +P  I D L SL  + +  N  
Sbjct: 433 IKSIP------KQVVKLE-----ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

Query: 349 D 349
           D
Sbjct: 481 D 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 44/250 (17%), Positives = 91/250 (36%), Gaps = 21/250 (8%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISL-LQSIASIFPSLK 59
             S  +LN +  + N+F  I     +L   T + Y ++ +  L   L  +       SLK
Sbjct: 221 KLSNLTLNNIETTWNSFIRI----LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
            LS+     +     Q +  ++   +++++   ++       +    +    +L    ++
Sbjct: 277 ALSIHQVVSDVFGFPQSYI-YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC---LANMTSLRILDVSSNQLTGSI 176
           L              L  L+ L +  N L+  L         M SL+ LD+S N ++   
Sbjct: 336 LTDTVFENCG----HLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
                    S+  L +S+N   +  ++        +K     +N+I +   Q   L    
Sbjct: 391 KKGDCSWTKSLLSLNMSSN--ILTDTIFRCLPPR-IKVLDLHSNKIKSIPKQVVKLE--- 444

Query: 237 FQLSRLSLSS 246
             L  L+++S
Sbjct: 445 -ALQELNVAS 453

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 483 LQILDISDNNISGSLPSCFHPLSVEQV-HLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL 541
             IL+IS N IS    S    LS  ++  +S N +   L    F  +  L  LDLS+N+L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 542 NGNISDWVDGLSQLSHLILGHNNLEG-EVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNT 600
                        L HL L  N  +   +  +   ++QL+ L LS   L  S  L + + 
Sbjct: 82  VKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 601 TLHESYNNSSSLDKQFE 617
            + +          + E
Sbjct: 139 NISKVLLVLGETYGEKE 155

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 2e-24
 Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 13/256 (5%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT-G 374
           +  ++      +P     +  S   L +  N L       F  +  L  L LS+N L+  
Sbjct: 12  IRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 375 EIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSL-SKC 432
                   G  +L+ L LS N +     S NF  L  L  L  + ++       S+    
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN-HLEGPIPVEFCQLDWLQILDISDN 491
             L  L +++             L+ L+ + M  N   E  +P  F +L  L  LD+S  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 492 NISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD 550
            +    P+ F+ L S++ +++S N     L    +    SL  LD S N +  +    + 
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 551 GL-SQLSHLILGHNNL 565
              S L+ L L  N+ 
Sbjct: 245 HFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 7/171 (4%)

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLD 481
            +P  +        L L +N L          LT+L  + +  N L   G          
Sbjct: 21  SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 482 WLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR 540
            L+ LD+S N +  ++ S F  L  +E +    + L    +   F +  +L+ LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 541 LNGNISDWVDGLSQLSHLILGHNN-LEGEVPVQLCKLNQLQLLDLSNNSLH 590
                +   +GLS L  L +  N+  E  +P    +L  L  LDLS   L 
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 49/263 (18%), Positives = 80/263 (30%), Gaps = 33/263 (12%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLT-GSISSSPLVHLTSIEELYLSNN 195
               L +  N L+         +T L  L +SSN L+     S      TS++ L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 196 HFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFP 255
              +      F    +L+     ++ +        S+      L  L +S  +     F 
Sbjct: 89  --GVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGM 315
                   LE + ++       F   +      L  L L                     
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL--------------------- 182

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
              S       +     + L SL  LN+S N         +  +  LQ+LD S NH+   
Sbjct: 183 ---SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237

Query: 376 IPEHLVVGCV-NLESLALSNNSL 397
             +  +     +L  L L+ N  
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 36/224 (16%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
           G   S   L L SN    +          T L  L+L S+   +S     +       +L
Sbjct: 25  GIPSSATRLELESNKLQSLPHGV--FDKLTQLTKLSLSSN--GLSFKGCCSQSDFGTTSL 80

Query: 62  SMIGCEVNGLVRGQ-GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
             +    NG++     F   + LEHLD + + +                +   S+F S  
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK--------------QMSEFSVFLS-- 124

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
                         L +L  L+I++   R +       ++SL +L ++ N    +     
Sbjct: 125 --------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINA 224
              L ++  L LS    +  +S   F + S L+     +N   +
Sbjct: 171 FTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS 213

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 13/222 (5%)

Query: 253 IFPKFLYHQHDLEYVDLSHIKMN-GEFPTWLLENNTKLRQLSLVNDSLGGPFQLP--IHS 309
           +          L  + LS   ++     +      T L+ L L  + +     +      
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLG 99

Query: 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSN 369
            ++L  LD  ++N +      +   L +L  L+IS      +    F  +  L++L ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 370 NHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP 426
           N         +     NL  L LS      L    F+   +L++L+ L +  N+F     
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDT 216

Query: 427 QSLSKCFVLEGLFLNNNSLSGKIPRWLGNL-TRLQHIMMPKN 467
                   L+ L  + N +     + L +  + L  + + +N
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 2e-24
 Identities = 59/365 (16%), Positives = 113/365 (30%), Gaps = 58/365 (15%)

Query: 257 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGML 316
             +H    E +          +   L    ++ ++    + +         +S+    + 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIE 61

Query: 317 DISNNNFRGHIPVEIGD-VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
             +    +      + D   P   +L +    L    P     +  LQ + +    L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSKCFV 434
           +P+ +      LE+L L+ N L       +  +L  LR L +     + E+P+ L+    
Sbjct: 119 LPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLAST-- 173

Query: 435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
                                L  LQ + +    +   +P     L  L+ L I ++ +S
Sbjct: 174 -------------DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS 219

Query: 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554
            +L    H L                          L  LDL       N      G + 
Sbjct: 220 -ALGPAIHHLP------------------------KLEELDLRGCTALRNYPPIFGGRAP 254

Query: 555 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN----TTLHESYNNSS 610
           L  LIL   +    +P+ + +L QL+ LDL        +P  +        +    +  +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 611 SLDKQ 615
            LD+ 
Sbjct: 315 QLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 58/366 (15%), Positives = 100/366 (27%), Gaps = 68/366 (18%)

Query: 109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVS 168
             + L   GS     + R     L         +           W  AN  + +I   +
Sbjct: 13  GRENLYFQGS----TALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRT 64

Query: 169 SNQLTGSISSSPLVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNNEIN---A 224
              L  +              L L +      P   +  F  S L+    D   +     
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPD 121

Query: 225 EITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE 284
            + Q   L      L+R  L +        P  +   + L  + +       E P  L  
Sbjct: 122 TMQQFAGLE--TLTLARNPLRA-------LPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 285 NNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNIS 344
            +       LVN                L  L +     R  +P  I + L +L SL I 
Sbjct: 173 TDASGEHQGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIR 214

Query: 345 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSR 404
            + L  ++  +  ++  L+ LDL         P                           
Sbjct: 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF------------------------ 249

Query: 405 NFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM 464
                 L+ L L+    +  +P  + +   LE L L       ++P  +  L     I++
Sbjct: 250 -GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 465 PKNHLE 470
           P +   
Sbjct: 309 PPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 58/331 (17%), Positives = 108/331 (32%), Gaps = 37/331 (11%)

Query: 183 HLTSIEELYLSNNHFQIPISLEPFFNH-SRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241
           H +  E LY   +      +L P+ +  S+ +  Y  +        +  +   P  +   
Sbjct: 10  HSSGRENLYFQGST-----ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 242 LSLSSGYGDGFIFPKFLYH--QHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
                           L    Q     ++L  + +  +FP       + L+ +++    L
Sbjct: 65  GRALK------ATADLLEDATQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGL 116

Query: 300 GGPFQLP--IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG 357
               +LP  +     L  L ++ N  R  +P  I   L  L  L+I        +P    
Sbjct: 117 M---ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLA 171

Query: 358 NMKF---------LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-N 407
           +            LQ L L    +   +P  +     NL+SL + N+ L          +
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA--LGPAIHH 227

Query: 408 LTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN 467
           L  L  L L G   +   P        L+ L L + S    +P  +  LT+L+ + +   
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 468 HLEGPIPVEFCQLDWLQILDISDNNISGSLP 498
                +P    QL    I+ +  +  +    
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 54/382 (14%), Positives = 104/382 (27%), Gaps = 71/382 (18%)

Query: 20  IATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPH 79
           + ++    H+ +  E L    S+        ++  +    N                   
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWH--------SAWR 51

Query: 80  FKSLEHLDMEGALIALNTSFLQIIGE-SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHL 138
             +  +  +E        +   ++ + + P    L L    L              L HL
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHL 106

Query: 139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
           Q + I    L   LP  +     L  L ++ N L  ++ +S +  L  + EL +      
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC--- 160

Query: 199 IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFL 258
                        L                   L + +       L +            
Sbjct: 161 -----------PELTEL-------------PEPLASTDASGEHQGLVN------------ 184

Query: 259 YHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLP--IHSHKRLGML 316
                L+ + L    +    P   + N   L+ L + N  L     L   IH   +L  L
Sbjct: 185 -----LQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPL---SALGPAIHHLPKLEEL 234

Query: 317 DISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 376
           D+       + P   G     L  L +   +   ++P     +  L+ LDL        +
Sbjct: 235 DLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 377 PEHLVVGCVNLESLALSNNSLE 398
           P  L+        + +  +   
Sbjct: 294 PS-LIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
                 L  + + +    ++      +  F  LE LTL  + L  +L  SIAS    L+ 
Sbjct: 100 AFRLSHLQHMTIDAAGLMEL---PDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRE 154

Query: 61  LSMIGC--------EVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLK 111
           LS+  C         +             +L+ L +E   + +L  S       ++ +LK
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI-----ANLQNLK 209

Query: 112 YLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSS-N 170
            L +       +    L   +  L  L+ L++       + P        L+ L +   +
Sbjct: 210 SLKIRN-----SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 171 QLTGSISSSPLVHLTSIEELYLSNNH 196
            L  ++    +  LT +E+L L    
Sbjct: 265 NLL-TLPLD-IHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           + P    L L S           +    ++L+++T+D++ L   L  ++   F  L+ L+
Sbjct: 79  TQPGRVALELRSVPLPQF---PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLT 133

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEG--ALIALNTSFLQIIG----ESMPSLKYLSLF 116
           +    +  L           L  L +     L  L             + + +L+ L L 
Sbjct: 134 LARNPLRAL--PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 117 GSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
                    R L   + +L +L+ L I  + L  +L   + ++  L  LD+       + 
Sbjct: 192 W-----TGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 177 SSSPLVHLTSIEELYLSNN 195
                     ++ L L + 
Sbjct: 246 PPI-FGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 22/181 (12%)

Query: 2   GSFPSLNTLYLSSNN-FTDI------ATATQELHNFTNLEYLTLDSSSLHISLLQSIASI 54
            S   L  L + +    T++        A+ E     NL+ L L+ + +  SL  SIA++
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANL 205

Query: 55  FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEG--ALIALNTSFLQIIGESMPSLKY 112
             +LK+L +    ++ L  G    H   LE LD+ G  AL      F          LK 
Sbjct: 206 -QNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCTALRNYPPIF-----GGRAPLKR 257

Query: 113 LSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQL 172
           L L       ++   L   +  L  L+ L++        LP  +A + +  I+ V  +  
Sbjct: 258 LILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 173 T 173
            
Sbjct: 314 A 314

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (262), Expect = 3e-24
 Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 16/259 (6%)

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
           +   +  +       +P     +  +   LN+  N +      +F ++  L++L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 372 LTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428
           +  +I      G  +L +L L +N    +    F     L+ LR L L  N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 429 LSKCFVLEGLFL-NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 487
            ++   L  L L     L          L  L+++ +   +++  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 488 ISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS 546
           +S N+     P  FH L S++++ +  + +   ++R  F    SLV L+L++N L+    
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 547 DWVDGLSQLSHLILGHNNL 565
           D    L  L  L L HN  
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 9e-16
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 7/183 (3%)

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSN- 369
             L  L++ +N     IP    + L  L  L +  N ++     +F  +  L  LDL   
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 370 NHLTGEIPEHLVVGCVNLESLALSNNSLEG-HMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428
             L   I E    G  NL+ L L   +++     +    L  L  L++ GNHF    P S
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGS 237

Query: 429 LSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI 488
                 L+ L++ N+ +S         L  L  + +  N+L       F  L +L  L +
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 489 SDN 491
             N
Sbjct: 298 HHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 25/247 (10%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
             +   L L  NN   I   T    +  +LE L L  +   I  ++  A  F  L +L+ 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT--FRHLHHLEVLQLGRN--SIRQIEVGA--FNGLASLNT 127

Query: 64  IGCEVNGL--VRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           +    N L  +    F +   L  L +    + ++ +         +PSL  L L     
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN----RVPSLMRLDL----G 179

Query: 121 GTNSSRILDRG-LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
                  +  G    L +L+ LN+   +++  +P  L  +  L  L++S N     I   
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPG 236

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
               L+S+++L++ N+   + I    F   + L      +N ++   +  H L  P   L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYL 292

Query: 240 SRLSLSS 246
             L L  
Sbjct: 293 VELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 15/192 (7%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
            SLNTL L  N  T I +        + L  L L ++ +  S+     +  PSL  L + 
Sbjct: 123 ASLNTLELFDNWLTVIPSGA--FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG 179

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
             +    +    F    +L++L++    I    +        +  L+ L + G     N 
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL-----TPLVGLEELEMSG-----NH 229

Query: 125 SRILDRG-LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 183
              +  G    L  L+ L +  + +          + SL  L+++ N L+ S+       
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTP 288

Query: 184 LTSIEELYLSNN 195
           L  + EL+L +N
Sbjct: 289 LRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 24/223 (10%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDS---SSLHISLLQSIASIFPSLK 59
               L  L L  N+   I       +   +L  L L     + +     +        L+
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDNWLTVIPSGAFEY----LSKLR 150

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGA--LIALNTSFLQIIGESMPSLKYLSLFG 117
            L +    +  +     F    SL  LD+     L  ++    +     + +LKYL+L  
Sbjct: 151 ELWLRNNPIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGAFE----GLFNLKYLNLGM 205

Query: 118 SILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS 177
                 + + +   L  LV L+ L ++ N      P     ++SL+ L V ++Q++  I 
Sbjct: 206 -----CNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIE 258

Query: 178 SSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
            +    L S+ EL L++N+    +  + F     L   +  +N
Sbjct: 259 RNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 33/261 (12%)

Query: 48  LQSI-ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIAL--NTSFLQIIG 104
           L  +   I  + + L+++   +  +     F H   LE L +    I      +F     
Sbjct: 66  LSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF----- 119

Query: 105 ESMPSLKYLSLFGSILGTNSSRILDRG-LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLR 163
             + SL  L LF      N   ++  G    L  L+ L +  N +     +    + SL 
Sbjct: 120 NGLASLNTLELFD-----NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 164 ILDVSS-NQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
            LD+    +L   IS      L +++ L L   + +    +        L+      N  
Sbjct: 175 RLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF 230

Query: 223 NAEITQSHSLTAPNF----QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 278
                    +   +F     L +L + +      I          L  ++L+H  ++   
Sbjct: 231 -------PEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 279 PTWLLENNTKLRQLSLVNDSL 299
           P  L      L +L L ++  
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 5e-24
 Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 16/255 (6%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           +     N R  +P  I     +   LN+  N +     +SF +++ L+IL LS NH+   
Sbjct: 48  VICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-T 102

Query: 376 IPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKC 432
           I      G  NL +L L +N   ++    F     L+ L+ L L  N        + ++ 
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 433 FVLEGLFL-NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
             L  L L     LS         L+ L+++ +   +L   IP     L  L  LD+S N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGN 217

Query: 492 NISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD 550
           ++S   P  F  L  ++++ + ++ +   ++R  F N  SLV ++L++N L     D   
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 551 GLSQLSHLILGHNNL 565
            L  L  + L HN  
Sbjct: 277 PLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 4e-21
 Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 16/238 (6%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEG 418
              +     +L  E+P+ +     N   L L  N    ++ + F    +L +L  LQL  
Sbjct: 45  FSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQIIKVNSFK---HLRHLEILQLSR 97

Query: 419 NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 478
           NH       + +    L  L L +N L+         L++L+ + +  N +E      F 
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 479 QLDWLQILDISDNNISGSLPS-CFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
           ++  L+ LD+ +      +    F  L ++  ++L+   L    +         L  LDL
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDL 214

Query: 537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
           S N L+        GL  L  L +  + ++         L  L  ++L++N+L   +P
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 25/247 (10%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
             +   L L  N    I   +    +  +LE L L  +  HI  ++  A  F  L NL+ 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS--FKHLRHLEILQLSRN--HIRTIEIGA--FNGLANLNT 116

Query: 64  IGCEVNGL--VRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           +    N L  +    F +   L+ L +    + ++ +         +PSL+ L L     
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN----RIPSLRRLDLGEL-- 170

Query: 121 GTNSSRILDRG-LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
                  +  G    L +L+ LN+A  +LR  +P  L  +  L  LD+S N L+ +I   
Sbjct: 171 --KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPG 225

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
               L  +++L++  +  Q+ I    F N   L      +N +       H L  P   L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHL 281

Query: 240 SRLSLSS 246
            R+ L  
Sbjct: 282 ERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 44/182 (24%), Positives = 67/182 (36%), Gaps = 7/182 (3%)

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLS-NN 370
            L  L++ +N     IP      L  L  L +  N ++     +F  +  L+ LDL    
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSLEG-HMFSRNFNLTNLRWLQLEGNHFVGEIPQSL 429
            L+  I E    G  NL  L L+  +L      +    L  L  L L GNH     P S 
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSF 227

Query: 430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 489
                L+ L++  + +         NL  L  I +  N+L       F  L  L+ + + 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 490 DN 491
            N
Sbjct: 288 HN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 21/195 (10%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIA-SIFPSLKNLSM 63
            +LNTL L  N  T I          + L+ L L   +  I  + S A +  PSL+ L +
Sbjct: 112 ANLNTLELFDNRLTTIPNGA--FVYLSKLKELWL--RNNPIESIPSYAFNRIPSLRRLDL 167

Query: 64  IGCEVNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
                  L  +    F    +L +L++    +    +        +  L  L L G    
Sbjct: 168 GEL--KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-----TPLIKLDELDLSG---- 216

Query: 122 TNSSRILDRG-LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
            N    +  G    L+HLQ L +  + ++        N+ SL  ++++ N LT  +    
Sbjct: 217 -NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL 274

Query: 181 LVHLTSIEELYLSNN 195
              L  +E ++L +N
Sbjct: 275 FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 31/260 (11%)

Query: 48  LQSI-ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIAL--NTSFLQIIG 104
           L+ +   I  + + L++   ++  +     F H + LE L +    I      +F     
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF----- 108

Query: 105 ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRI 164
             + +L  L LF + L    + I +     L  L+ L +  N +     +    + SLR 
Sbjct: 109 NGLANLNTLELFDNRL----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 165 LDVSS-NQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN 223
           LD+    +L+  IS      L+++  L L+  + +    +       +L       N + 
Sbjct: 165 LDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL- 219

Query: 224 AEITQSHSLTAPNF----QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 279
                  ++   +F     L +L +        I      +   L  ++L+H  +    P
Sbjct: 220 ------SAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 280 TWLLENNTKLRQLSLVNDSL 299
             L      L ++ L ++  
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 1e-23
 Identities = 89/496 (17%), Positives = 157/496 (31%), Gaps = 76/496 (15%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLC-SLVHLQVLNIAYNDLRGSLPWCLANMTSLRI 164
            +  L+ L L       N  R LD  +      L+ L++++N L+ ++      M SLR 
Sbjct: 74  FLSELRVLRL-----SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRH 125

Query: 165 LDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEP-FFNHSRLKSFYADNNEIN 223
           LD+S N            +LT +  L LS   F+    L+     H  L     D    +
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYH 182

Query: 224 AEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 283
            +  ++ SL  PN  +  L               +     L+  ++     N +     L
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 284 EN---NTKLRQLSLVNDSLGGPFQLPIHS---HKRLGMLDISNNNFRGHIPVEIGD---- 333
                   L  ++L +        + +      + +  L+I N      I  E       
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 334 VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS 393
            L SL   ++       S  + +     + I  LS +     I         +   L  +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFT 361

Query: 394 NNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW 452
            N        +    L  L+ L L+ N       ++  K                     
Sbjct: 362 QNVFT-DSVFQGCSTLKRLQTLILQRNGL-----KNFFKVA-----------------LM 398

Query: 453 LGNLTRLQHIMMPKNHLEGPIPVEFCQL-DWLQILDISDNNISGSLPSCFHPLSVEQVHL 511
             N++ L+ + +  N L        C   + + +L++S N ++GS+  C  P        
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-------- 450

Query: 512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPV 571
                              +  LDL  NR+  +I   V  L  L  L +  N L+     
Sbjct: 451 ------------------KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491

Query: 572 QLCKLNQLQLLDLSNN 587
              +L  LQ + L +N
Sbjct: 492 VFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.5 bits (240), Expect = 4e-21
 Identities = 85/471 (18%), Positives = 161/471 (34%), Gaps = 65/471 (13%)

Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
            L  L+VL +++N +R            L  LDVS N+L  +IS  P+  L     L LS
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLR---HLDLS 129

Query: 194 NNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI 253
            N F +    + F N ++L                         +  +L L         
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAA-----------------KFRQLDL-----LPVA 167

Query: 254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRL 313
                    DL    +      GE  +  + N T L  +   N        + +++   L
Sbjct: 168 HLHLSCILLDLVSYHIKG----GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 314 GMLDIS-NNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI-----LDL 367
            + +I  N+     +   + ++      LN+++  ++ +   S    +F        L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 368 SNNHLTGEIPEHLVVGCVN-LESLALSNNSLEGHMFSRNF---NLTNLRWLQLEGNHFVG 423
            N  +T  I           L+SL + +   +  +FS+         +    L  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
                         L    N  +  + +    L RLQ +++ +N L+            +
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNM 402

Query: 484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543
             L+  D                     S N L+      T   + S++ L+LS N L G
Sbjct: 403 SSLETLDV--------------------SLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442

Query: 544 NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
           ++   +    ++  L L +N +   +P  +  L  LQ L++++N L  S+P
Sbjct: 443 SVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 9e-20
 Identities = 87/487 (17%), Positives = 172/487 (35%), Gaps = 55/487 (11%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI-ASIFPSLKNLSM 63
           P    L LS N+ +++     ++   + L  L L  + +     +S+   +F   ++L  
Sbjct: 52  PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEY 104

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGE-----SMPSLKYLSLFGS 118
           +    N L +        SL HLD       L+ +   ++       ++  L +L L  +
Sbjct: 105 LDVSHNRL-QNISCCPMASLRHLD-------LSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP------WCLANMTSLRIL----DVS 168
                        L  + HL +  I  + +   +         + N T L ++     + 
Sbjct: 157 KFRQLD-------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 169 SNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQ 228
           S Q+  S+++   + L++I+      N  ++   L        L +    + E   + + 
Sbjct: 210 SVQVNMSVNALGHLQLSNIK--LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 229 SHSLTAPNFQLSRLSLSS-GYGDGFIFPKFLYHQHDLEYVDLSHIKMNG--EFPTWLLEN 285
                     +  L++ +    +     +F Y +  L+ + + H+K          L   
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISM 345
             ++    L          +   S      L+ + N F      +    L  L +L +  
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQR 386

Query: 346 NALDGSIPSSFG---NMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF 402
           N L  +         NM  L+ LD+S N L     +       ++  L LS+N L G +F
Sbjct: 387 NGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 403 SRNFNLT-NLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPR-WLGNLTRLQ 460
                L   ++ L L  N     IP+ ++    L+ L + +N L   +P      LT LQ
Sbjct: 446 RC---LPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500

Query: 461 HIMMPKN 467
           +I +  N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.8 bits (181), Expect = 6e-14
 Identities = 59/332 (17%), Positives = 110/332 (33%), Gaps = 25/332 (7%)

Query: 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366
           I     L +L +S+N  R  +   +      L  L++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 367 LSNNHLTGEIPEHLVVGC-VNLESLALSNNSLEGHMFSRNFNL-TNLRWLQLEGNHFVGE 424
           LS N     +P     G    L  L LS             +L  +   L L   H  G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 425 IPQSLS--KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ--HIMMPKNHLEGPIPVEFCQL 480
             +SL      VL  +F  N+  S ++   +  L  LQ  +I +   + +  +       
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 481 DWLQILDISDNNISGSLPSCFHPLS------VEQVHLSKNMLHGQLKRGTFFNS----YS 530
               +L+++  +I  +               VE +++    +  ++ R  F  S     S
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 531 LVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
           L+   +       +        ++++  +L  ++      V     +    L+ + N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 591 GSIPLCLDN----TTLHESYNNSSSLDKQFEI 618
            S+           TL    N   +  K   +
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 87/433 (20%), Positives = 157/433 (36%), Gaps = 54/433 (12%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
               SL  L LS N+F  +    +E  N T L +L L ++      L  +A +  S   L
Sbjct: 118 CPMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
            ++   + G                    +L   NT+ L +           SLF     
Sbjct: 177 DLVSYHIKGG----------------ETESLQIPNTTVLHL------VFHPNSLF----- 209

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRG----SLPWCLANMTSLRILDVSSNQLT--GS 175
              S  ++  + +L HLQ+ NI  ND       +    L    +L  + +   + T   S
Sbjct: 210 ---SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 176 ISSSPLVHLTSIEELYLSNNHFQIPISLEPF-FNHSRLKSFYADNNEINAEITQSHSLTA 234
           +          +E L + N      I  E F ++ + LKS   ++ +    +    +L +
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 235 PNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL 294
              +++   L S     FI            +++ +      +          +L+ L L
Sbjct: 327 VFAEMNIKML-SISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLIL 384

Query: 295 VN---DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS 351
                 +      +   +   L  LD+S N+   H          S+  LN+S N L GS
Sbjct: 385 QRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 352 IPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNL 408
           +         +++LDL NN +   IP+  V     L+ L +++N   S+   +F     L
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIM-SIPKD-VTHLQALQELNVASNQLKSVPDGVFD---RL 496

Query: 409 TNLRWLQLEGNHF 421
           T+L+++ L  N +
Sbjct: 497 TSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 57/382 (14%), Positives = 119/382 (31%), Gaps = 74/382 (19%)

Query: 1   MGSFPSLNTLYLS---SNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIF-- 55
             S    NT  L      N          ++   +L+   +  +  +   L +  S    
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 56  -PSLKNLSMIGCEV--NGLVRGQGFPHFKSLEHLDMEGALIA--LNTSFLQIIGESMPSL 110
            P+L N+++   E      V+   F   + +E+L++    I   ++         ++ SL
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 111 KYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSN 170
               +   +   +   +          + +  ++ +D       C  + +S   L+ + N
Sbjct: 308 MIEHVKNQVFLFSKEALYS----VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 171 QLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNH-SRLKSFYADNNEINAEITQS 229
             T          L  ++ L L  N  +   +          + S    +  +N      
Sbjct: 364 VFT-DSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTKNMSSLETLDVSLN------ 413

Query: 230 HSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 289
                        SL+S       + +       +  ++LS   +               
Sbjct: 414 -------------SLNSH-----AYDRTCAWAESILVLNLSSNMLT-------------- 441

Query: 290 RQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD 349
                V   L            ++ +LD+ NN     IP ++   L +L  LN++ N L 
Sbjct: 442 ---GSVFRCL----------PPKVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQL- 485

Query: 350 GSIP-SSFGNMKFLQILDLSNN 370
            S+P   F  +  LQ + L +N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
            F  +N   LS ++   I        + ++  +L    +        S+     +LK L 
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCP--PSPSSFTFLNFTQNVF----TDSVFQGCSTLKRLQ 380

Query: 63  MIGCEVNGL----VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGS 118
            +  + NGL           +  SLE LD+   L +LN+           S+  L+L  +
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVS--LNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
           +L  +  R L         ++VL++  N +  S+P  + ++ +L+ L+V+SNQL  S+  
Sbjct: 439 MLTGSVFRCL------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490

Query: 179 SPLVHLTSIEELYLSNNHFQ 198
                LTS++ ++L +N + 
Sbjct: 491 GVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 483 LQILDISDNNISGSLPSCFHPLSVEQV-HLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL 541
            + L +S N+IS         LS  +V  LS N +   L    F  +  L  LD+S+NRL
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 542 NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC--KLNQLQLLDLSNNSLHGSIPLCLDN 599
             NIS     ++ L HL L  N+ +  +PV      L +L  L LS         L + +
Sbjct: 113 -QNISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 600 TTLHESYNNSSSLD 613
             L     +  S  
Sbjct: 169 LHLSCILLDLVSYH 182

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 16/157 (10%)

Query: 474 PVEFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLV 532
             +   L  L++L +S N I       F     +E + +S N    +L+  +     SL 
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN----RLQNISCCPMASLR 124

Query: 533 TLDLSYNRLNG-NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL----LDLSNN 587
            LDLS+N  +   +      L++L+ L L          + L  +  L L    LDL + 
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY 181

Query: 588 SLHGSIPLCLDN---TTLHESYNNSSSLDKQFEISFS 621
            + G     L     T LH  ++ +S    Q  +S +
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 4e-23
 Identities = 87/457 (19%), Positives = 155/457 (33%), Gaps = 92/457 (20%)

Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
              HL+ L  + N L   LP    ++ SL + + +   L+             +E L +S
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVS 139

Query: 194 NNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI 253
           NN  +    L    N S LK    DNN +                               
Sbjct: 140 NNQLE---KLPELQNSSFLKIIDVDNNSLKK----------------------------- 167

Query: 254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRL 313
            P        LE++   + ++  E P   L+N   L  +   N+SL     LP+     L
Sbjct: 168 LPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----L 217

Query: 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373
             +   NN        E+ + LP L ++    N L  ++P    +   L+ L++ +N+LT
Sbjct: 218 ESIVAGNNIL--EELPELQN-LPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT 270

Query: 374 GEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF 433
            ++PE       +L  L +S N         +    NL +L    N     +        
Sbjct: 271 -DLPELPQ----SLTFLDVSENIFS----GLSELPPNLYYLNASSNEIR-SLCDLPPS-- 318

Query: 434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI 493
            LE L ++NN L  ++P     L RL   +   NHL   +P     L   + L +  N +
Sbjct: 319 -LEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQNL---KQLHVEYNPL 369

Query: 494 SGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS 553
               P     +   +++     +    +        +L  L +  N L     ++ D   
Sbjct: 370 R-EFPDIPESVEDLRMNSHLAEVPELPQ--------NLKQLHVETNPL----REFPDIPE 416

Query: 554 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
            +  L +    +           ++L+     ++  H
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 91.2 bits (227), Expect = 1e-19
 Identities = 97/490 (19%), Positives = 160/490 (32%), Gaps = 107/490 (21%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
              + L L++   + +           +LE L    +S     L  +  +  SLK+L + 
Sbjct: 71  RQAHELELNNLGLSSL------PELPPHLESLVASCNS-----LTELPELPQSLKSLLVD 119

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
              +  L      P    LE+L +    +                LK + +       NS
Sbjct: 120 NNNLKAL---SDLPP--LLEYLGVSNNQLEKLPELQN-----SSFLKIIDVDN-----NS 164

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 184
            + L     S   L+ +    N L   LP  L N+  L  +   +N L            
Sbjct: 165 LKKLPDLPPS---LEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL-----P 214

Query: 185 TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL 244
            S+E +   NN  +    L    N   L + YADNN                  L  L  
Sbjct: 215 LSLESIVAGNNILE---ELPELQNLPFLTTIYADNN-----------------LLKTLPD 254

Query: 245 SSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQ 304
                              LE +++    +  + P         L  L +  +   G  +
Sbjct: 255 LPP---------------SLEALNVRDNYLT-DLPELP----QSLTFLDVSENIFSGLSE 294

Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
           LP      L  L+ S+N  R      + D+ PSL  LN+S N L   +P+       L+ 
Sbjct: 295 LP----PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPR---LER 341

Query: 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE 424
           L  S NHL  E+PE       NL+ L +  N L            ++  L++  N  + E
Sbjct: 342 LIASFNHLA-EVPELP----QNLKQLHVEYNPLR----EFPDIPESVEDLRM--NSHLAE 390

Query: 425 IPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 484
           +P+       L+ L +  N L  + P    ++  L+   M    +  P        D L+
Sbjct: 391 VPELPQN---LKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLE 443

Query: 485 ILDISDNNIS 494
                 ++  
Sbjct: 444 DDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.1 bits (224), Expect = 3e-19
 Identities = 95/504 (18%), Positives = 171/504 (33%), Gaps = 104/504 (20%)

Query: 133 CSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS------------P 180
            S   LQ      ++L   +P    N+ S      + ++   +                 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 181 LVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNN---EINAEITQSHSLTAPN 236
                   EL L+N     +P           L+S  A  N   E+        SL   N
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELP------PHLESLVASCNSLTELPELPQSLKSLLVDN 120

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L  LS                    LEY+ +S+ ++  + P   L+N++ L+ + + N
Sbjct: 121 NNLKALSDLP---------------PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDN 162

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSF 356
           +SL     LP      L  +   NN     +P E+ + LP L ++    N+L   +P   
Sbjct: 163 NSLKKLPDLP----PSLEFIAAGNNQLE-ELP-ELQN-LPFLTAIYADNNSLK-KLPDLP 214

Query: 357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416
            +   L+ +   NN L  E+PE  +     L ++   NN L+    +      +L  L +
Sbjct: 215 LS---LESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLK----TLPDLPPSLEALNV 264

Query: 417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE 476
             N+   ++P+       L  L ++ N  S  +     NL  L       N +       
Sbjct: 265 RDNYLT-DLPELPQS---LTFLDVSENIFS-GLSELPPNLYYLN---ASSNEIRSLCD-- 314

Query: 477 FCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLH---GQLKRGTFFNSYSLVT 533
                 L+ L++S+N +   LP+    L  E++  S N L       +        +L  
Sbjct: 315 --LPPSLEELNVSNNKLI-ELPALPPRL--ERLIASFNHLAEVPELPQ--------NLKQ 361

Query: 534 LDLSYNRL---------------NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 578
           L + YN L               N ++++  +    L  L +  N L  E P        
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD---IPES 417

Query: 579 LQLLDLSNNSLHGSIPLCLDNTTL 602
           ++ L +++  +        + T  
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDK 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 4e-19
 Identities = 66/318 (20%), Positives = 113/318 (35%), Gaps = 48/318 (15%)

Query: 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGN---------- 358
           S+  L      ++N    +PVE  + + S      + +  + + P   G           
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 359 ---MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415
               +    L+L+N  L+  +PE       +LESL  S NSL   +     +L +L    
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV 475
                     P        LE L ++NN L  K+P  L N + L+ I +  N L+  +P 
Sbjct: 121 NNLKALSDLPPL-------LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD 170

Query: 476 EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNS-YSLVTL 534
               L   + +   +N +   LP   +   +  ++   N L          +   SL ++
Sbjct: 171 LPPSL---EFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK------KLPDLPLSLESI 220

Query: 535 DLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
               N L   + + +  L  L+ +   +N L+  +P     L  L + D     L     
Sbjct: 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQ 277

Query: 595 LCLDNTTLHESYNNSSSL 612
                T L  S N  S L
Sbjct: 278 SL---TFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 57/261 (21%), Positives = 89/261 (34%), Gaps = 36/261 (13%)

Query: 353 PSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLR 412
           P +  N  FLQ     +++LT E+P        +      + +  E +    N     + 
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP 472
             +L                     L LNN  LS  +P    +L  L       N L   
Sbjct: 62  VSRLRDCLDRQ-----------AHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-E 105

Query: 473 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLV 532
           +P     L  L + + +   +S   P       +E + +S N L    K     NS  L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLE---KLPELQNSSFLK 156

Query: 533 TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS 592
            +D+  N L        D    L  +  G+N LE E+P +L  L  L  +   NNSL   
Sbjct: 157 IIDVDNNSL----KKLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-K 209

Query: 593 IPLCLDN-TTLHESYNNSSSL 612
           +P    +  ++    N    L
Sbjct: 210 LPDLPLSLESIVAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 5e-11
 Identities = 62/373 (16%), Positives = 113/373 (30%), Gaps = 90/373 (24%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
              PSL  +   +N   ++     EL N   L  +  D++SL          +     +L
Sbjct: 170 DLPPSLEFIAAGNNQLEEL----PELQNLPFLTAIYADNNSLK--------KLPDLPLSL 217

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
             I    N L       +   L  +  +        + L+ + +  PSL+ L++      
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADN-------NLLKTLPDLPPSLEALNVRD---- 266

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
            N    L     SL  L V    ++ L    P       +L  L+ SSN++         
Sbjct: 267 -NYLTDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCDL--- 315

Query: 182 VHLTSIEELYLSNNHF-QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
               S+EEL +SNN   ++P          RL+   A  N                  L+
Sbjct: 316 --PPSLEELNVSNNKLIELPALP------PRLERLIASFN-----------------HLA 350

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
            +                    +L+ + + +  +  EFP         +  L + +    
Sbjct: 351 EVPELPQ---------------NLKQLHVEYNPLR-EFPDIP----ESVEDLRMNSHLAE 390

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
            P        + L  L +  N  R   P        S+  L ++   +      +     
Sbjct: 391 VPELP-----QNLKQLHVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHETTD 440

Query: 361 FLQILDLSNNHLT 373
            L+     ++H  
Sbjct: 441 KLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 41/248 (16%), Positives = 78/248 (31%), Gaps = 52/248 (20%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISL------------L 48
           + + P L T+Y  +N    +        +   L       + L                 
Sbjct: 233 LQNLPFLTTIYADNNLLKTL---PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 289

Query: 49  QSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDME-----------GALIALNT 97
             ++ + P+L  L+    E+  L          SLE L++              L  L  
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPALPPRLERLIA 344

Query: 98  SFLQI--IGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC 155
           SF  +  + E   +LK L +       N  R       S+  L++ +         +P  
Sbjct: 345 SFNHLAEVPELPQNLKQLHVEY-----NPLREFPDIPESVEDLRMNS-----HLAEVPEL 394

Query: 156 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSF 215
             N   L+ L V +N L       P     S+E+L +++     P          +L+  
Sbjct: 395 PQN---LKQLHVETNPLR-EFPDIP----ESVEDLRMNSERVVDPYEF-AHETTDKLEDD 445

Query: 216 YADNNEIN 223
             +++  +
Sbjct: 446 VFEHHHHH 453

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 55/289 (19%), Positives = 106/289 (36%), Gaps = 29/289 (10%)

Query: 313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHL 372
           L ++  S+   +  +P EI    P    L++  N +       F  ++ L  L L NN +
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 373 TGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSL 429
           + +I E        L+ L +S N    +  ++ S      +L  L++  N          
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVF 143

Query: 430 SKCFVLEGLFLNNNSL-SGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI 488
           S    +  + +  N L +        +  +L ++ + +  L G IP +    + L  L +
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHL 200

Query: 489 SDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD 547
             N I             + ++ L  N +   ++ G+     +L  L L  N+L+  +  
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 548 WVDGLSQLSHLILGHNNLEGEVPVQ-------LCKLNQLQLLDLSNNSL 589
            +  L  L  + L  NN+  +V V          K      + L NN +
Sbjct: 259 GLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 34/253 (13%)

Query: 361 FLQILDLSNNHLTG--------------------EIPEHLVVGCVNLESLALSNN---SL 397
            L+++  S+  L                      E+ +    G  +L +L L NN    +
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT 457
               FS    L  L+ L +  NH V EIP +L     L  L +++N +          L 
Sbjct: 94  HEKAFS---PLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLR 147

Query: 458 RLQHIMMPKNHL-EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML 516
            +  I M  N L              L  L IS+  ++G        L   ++HL  N +
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL--NELHLDHNKI 205

Query: 517 HGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL 576
              ++         L  L L +N++    +  +  L  L  L L +N L   VP  L  L
Sbjct: 206 Q-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263

Query: 577 NQLQLLDLSNNSL 589
             LQ++ L  N++
Sbjct: 264 KLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 48/239 (20%), Positives = 86/239 (35%), Gaps = 18/239 (7%)

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
           ++L  L IS N+    IP    ++  SL  L I  N +       F  ++ +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQ-SL 429
            L     E      + L  L +S   L   +         L  L L+ N     I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 489
            +   L  L L +N +       L  L  L+ + +  N L   +P     L  LQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 490 DNNISGSLPSCFHPL-------SVEQVHLSKNML-HGQLKRGTFFNSYSLVTLDLSYNR 540
            NNI+    + F P+           + L  N + + +++  TF      + +     +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 56/296 (18%), Positives = 111/296 (37%), Gaps = 33/296 (11%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
              +L++  ND+          +  L  L + +N+++  I       L  +++LY+S NH
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 197 F-QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF----QLSRLSLSSGYGDG 251
             +IP +L      S L      +N I         +    F     ++ + +     + 
Sbjct: 114 LVEIPPNL-----PSSLVELRIHDNRIR-------KVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
             F    +    L Y+ +S  K+    P  L E    L +L L ++ +       +  + 
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET---LNELHLDHNKIQAIELEDLLRYS 217

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
           +L  L + +N  R  I       LP+L  L++  N L   +P+   ++K LQ++ L  N+
Sbjct: 218 KLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275

Query: 372 LTGEIPE------HLVVGCVNLESLALSNNSLEGHMFSRN--FNLTNLRWLQLEGN 419
           +T ++           V       ++L NN +            +T+   +Q    
Sbjct: 276 IT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 24/246 (9%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
             L  L L +N  + I            L+ L +  +  H+  +    ++  SL  L + 
Sbjct: 78  QHLYALVLVNNKISKIHEKA--FSPLRKLQKLYISKN--HLVEIP--PNLPSSLVELRIH 131

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
              +  + +G  F   +++  ++M G    L  S  +        L YL +         
Sbjct: 132 DNRIRKVPKGV-FSGLRNMNCIEMGGN--PLENSGFEPGAFDGLKLNYLRISE-----AK 183

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 184
              + + L     L  L++ +N ++      L   + L  L +  NQ+   I +  L  L
Sbjct: 184 LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFL 240

Query: 185 TSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNN---EINAEITQSHSLTAPNFQLS 240
            ++ EL+L NN    +P       +   L+  Y   N   ++                 +
Sbjct: 241 PTLRELHLDNNKLSRVP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 241 RLSLSS 246
            +SL +
Sbjct: 298 GISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 31/227 (13%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
             L  LY+S N+  +I          ++L  L +  +   I  +     +F  L+N++ I
Sbjct: 102 RKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDN--RIRKVP--KGVFSGLRNMNCI 152

Query: 65  GCEVNGLVRGQGFPH--FK--SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
               N L    GF    F    L +L +  A +        I  +   +L  L L  + +
Sbjct: 153 EMGGNPL-ENSGFEPGAFDGLKLNYLRISEAKLT------GIPKDLPETLNELHLDHNKI 205

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
                 I    L     L  L + +N +R      L+ + +LR L + +N+L+  + +  
Sbjct: 206 ----QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG- 259

Query: 181 LVHLTSIEELYLSNNHFQ-IPI----SLEPFFNHSRLKSFYADNNEI 222
           L  L  ++ +YL  N+   + +     +      +        NN +
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 482 WLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR 540
              +LD+ +N+IS      F  L  +  + L  N +  ++    F     L  L +S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 541 LNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS 592
           L   I    +  S L  L +  N +          L  +  +++  N L  S
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 37/363 (10%)

Query: 263 DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSH-KRLGMLDISNN 321
            + YVDLS   +  E           L+ L +   + G   +         L +L +  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 322 NFRGHIPVEIGDVLPSLFSLNISMNALDGSI--PSSFGNMKFLQILDLSNNHLTGEIPEH 379
            F   +     + L +L  L ++   LDG++   + F  +  L++L L +N++    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 380 LVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNH--------FVGEIPQS 428
             +       L L+ N   S+       NF   +   L+L               E   +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 429 LSKCFVLEGLFLNNNSLSGKIPRW---LGNLTRLQHIMM----------PKNHLEGPIPV 475
             K   +  L L+ N     + +        T++Q +++             + + P   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 476 EFCQLDW--LQILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLV 532
            F  L+   ++  D+S + I   L S F   + +EQ+ L++N ++ ++    F+    L+
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326

Query: 533 TLDLSYNRLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591
            L+LS N L G+I   + + L +L  L L +N++          L  L+ L L  N L  
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK- 384

Query: 592 SIP 594
           S+P
Sbjct: 385 SVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 6e-20
 Identities = 74/436 (16%), Positives = 133/436 (30%), Gaps = 64/436 (14%)

Query: 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195
            H+  ++++ N +        + +  L+ L V        I ++    L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 196 HFQIPISLEP--FFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI 253
            F     LE   F   + L+                         L    LS  +     
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQC-----------------NLDGAVLSGNF----- 124

Query: 254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRL 313
           F         LE + L    +    P     N  +   L L  + +     +        
Sbjct: 125 FKPL----TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SICEEDLLNF 177

Query: 314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT 373
                +               L S+   +++   L      +      +  LDLS N   
Sbjct: 178 QGKHFTLLR------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 374 GEIPEHLVVGCVN--LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK 431
             + +          ++SL LSN+   G  F          +   +   F G     +  
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------NFKDPDNFTFKGLEASGVKT 279

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
                   L+ + +   +     + T L+ + + +N +       F  L  L  L++S N
Sbjct: 280 ------CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 492 NISGSLPSC-FHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV 549
            +  S+ S  F  L  +E + LS N +   L   +F    +L  L L  N+L        
Sbjct: 334 FLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 550 DGLSQLSHLILGHNNL 565
           D L+ L  + L  N  
Sbjct: 392 DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 8e-20
 Identities = 79/474 (16%), Positives = 149/474 (31%), Gaps = 109/474 (22%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
             +N + LS N+  ++   +       +L++L ++  +  + +     + F  L +    
Sbjct: 30  AHVNYVDLSLNSIAELNETS--FSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSS---- 80

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
                                                        L  L L  +      
Sbjct: 81  ---------------------------------------------LIILKLDYNQFLQLE 95

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSL--PWCLANMTSLRILDVSSNQLTGSISSSPLV 182
           +   +     L +L+VL +   +L G++        +TSL +L +  N +     +S  +
Sbjct: 96  TGAFN----GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 183 HLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241
           ++     L L+ N  + I       F           +  +                   
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------------------- 192

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSH--IKMNGEFPTWLLENNTKLRQLSLVNDSL 299
             ++  +               +  +DLS    K +     +     TK++ L L N   
Sbjct: 193 QDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN--- 248

Query: 300 GGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPS-SFGN 358
                    S       D  N  F+G            + + ++S + +  ++    F +
Sbjct: 249 ---SYNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSKI-FALLKSVFSH 297

Query: 359 MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQ 415
              L+ L L+ N +  +I ++   G  +L  L LS N   S++  MF    NL  L  L 
Sbjct: 298 FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---NLDKLEVLD 353

Query: 416 LEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPR-WLGNLTRLQHIMMPKN 467
           L  NH    +  QS      L+ L L+ N L   +P      LT LQ I +  N
Sbjct: 354 LSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 52/296 (17%), Positives = 107/296 (36%), Gaps = 40/296 (13%)

Query: 351 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLT 409
            +P+       +  +DLS N +  E+ E       +L+ L +   +    + +  F  L+
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 410 NLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL-SGKIPR-WLGNLTRLQHIMMPKN 467
           +L  L+L+ N F+     + +    LE L L   +L    +   +   LT L+ +++  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 468 HLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPLSVEQV---HLSKNMLH------ 517
           +++   P   F  +    +LD++ N +             +      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 518 -GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC-- 574
            G  K G  F + S+ TLDLS N    +++         + +     +    +       
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 575 -------------KLNQLQLLDLSNN---SLHGSIPLCLDN-TTLHESYNNSSSLD 613
                        + + ++  DLS +   +L  S+     +   L  + N  + +D
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 88/430 (20%), Positives = 133/430 (30%), Gaps = 114/430 (26%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
            SL  L L  N F  + T     +   NLE LTL   +L  ++L                
Sbjct: 79  SSLIILKLDYNQFLQLETGA--FNGLANLEVLTLTQCNLDGAVLSGNF------------ 124

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEG---ALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
                       F    SLE L +       I   + F      +M     L L  + + 
Sbjct: 125 ------------FKPLTSLEMLVLRDNNIKKIQPASFF-----LNMRRFHVLDLTFNKVK 167

Query: 122 TNSSRILDR------GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGS 175
           +     L         L  L  + + ++    L           TS+  LD+S N    S
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 176 ISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAP 235
           ++      +   +   L  ++     S     N                           
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP----------------------D 265

Query: 236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLV 295
           NF    L  S                  ++  DLS  K+       +  + T L QL+L 
Sbjct: 266 NFTFKGLEASG-----------------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL- 306

Query: 296 NDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPS- 354
                                  + N     I       L  L  LN+S N L GSI S 
Sbjct: 307 -----------------------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSR 341

Query: 355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNL 411
            F N+  L++LDLS NH+   + +   +G  NL+ LAL  N   S+   +F     LT+L
Sbjct: 342 MFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSL 397

Query: 412 RWLQLEGNHF 421
           + + L  N +
Sbjct: 398 QKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 64/374 (17%), Positives = 119/374 (31%), Gaps = 75/374 (20%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI--ASIFPSLKN 60
              +L  L L+  N      +       T+LE L L  ++     ++ I  AS F +++ 
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-----IKKIQPASFFLNMRR 155

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
             ++    N           KS+     E  L+        ++                 
Sbjct: 156 FHVLDLTFN---------KVKSIC----EEDLLNFQGKHFTLL----------------- 185

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
                         L  + + ++    L           TS+  LD+S N    S++   
Sbjct: 186 -------------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
              +   +   L  ++     S     N         +      E +   +       LS
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD----NFTFKGLEASGVKTC-----DLS 283

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
           +  + +      +      H  DLE + L+  ++N +         T L +L+L  + LG
Sbjct: 284 KSKIFA------LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 301 GPFQLPIHSHKRLGML---DISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS-F 356
               +     + L  L   D+S N+ R  +  +    LP+L  L +  N L  S+P   F
Sbjct: 337 S---IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIF 391

Query: 357 GNMKFLQILDLSNN 370
             +  LQ + L  N
Sbjct: 392 DRLTSLQKIWLHTN 405

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 62/287 (21%), Positives = 104/287 (36%), Gaps = 22/287 (7%)

Query: 317 DISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 376
             S+ +    IP  +     ++ SL++S N +     S       LQ L L++N +   I
Sbjct: 37  KGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TI 91

Query: 377 PEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSL-SKC 432
            E       +LE L LS N   +L    F     L++L +L L GN +      SL S  
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 433 FVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
             L+ L + N     KI  +    LT L+ + +  + L+   P     +  +  L +   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 492 NISGSLPSCFHPL-SVEQVHLSKNMLHG----QLKRGTFF---NSYSLVTLDLSYNRLNG 543
                L        SVE + L    L      +L  G        ++   + ++   L  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 544 NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
            +   ++ +S L  L    N L+        +L  LQ + L  N   
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 8e-19
 Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 15/246 (6%)

Query: 308 HSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS-FGNMKFLQILD 366
                L  L +++N     I  +    L SL  L++S N L  ++ SS F  +  L  L+
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130

Query: 367 LSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEI 425
           L  N         L      L+ L + N      +  ++F  LT L  L+++ +      
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 426 PQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE--------F 477
           P+SL     +  L L+       +  ++   + ++ + +    L+     E         
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 478 CQLDWLQILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
            +    + + I+D ++   +    + +  + ++  S+N L   +  G F    SL  + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 537 SYNRLN 542
             N  +
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 46/297 (15%)

Query: 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195
             ++ L+++ N +       L    +L+ L ++SN +  +I       L S+E L LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 196 HFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFP 255
           +    +S   F   S L       N                     L  +S     F   
Sbjct: 111 YLSN-LSSSWFKPLSSLTFLNLLGN-----------------PYKTLGETS----LFSHL 148

Query: 256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGM 315
             L           + I              T L +L +    L       + S + +  
Sbjct: 149 TKLQILRVGNMDTFTKI------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDG----SIPS----SFGNMKFLQILDL 367
           L +        +     DV  S+  L +    LD      + +    S       + + +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 368 SNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHF 421
           ++  L       L+     L  L  S N   S+   +F     LT+L+ + L  N +
Sbjct: 262 TDESLFQ--VMKLLNQISGLLELEFSRNQLKSVPDGIFD---RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 72/315 (22%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEP--FFNHSRLKSFYA 217
            +++ LD+S+N++T  IS+S L    +++ L L++N      ++E   F +   L+    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 277
             N ++                   +LSS                               
Sbjct: 108 SYNYLS-------------------NLSSS------------------------------ 118

Query: 278 FPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSH-KRLGMLDISNNNFRGHIPVEIGDVLP 336
                 +  + L  L+L+ +      +  + SH  +L +L + N +    I  +    L 
Sbjct: 119 ----WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN- 395
            L  L I  + L    P S  +++ +  L L        + E  V    ++E L L +  
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 396 -------SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK 448
                   L     +        R +++       ++ + L++   L  L  + N L   
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS- 291

Query: 449 IPRW-LGNLTRLQHI 462
           +P      LT LQ I
Sbjct: 292 VPDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 32/231 (13%)

Query: 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNH 420
           I   S+  L   IP  L      ++SL LSNN    +            NL+ L L  N 
Sbjct: 35  ICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQ---RCVNLQALVLTSNG 87

Query: 421 FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL 480
                  S S    LE L L+ N LS     W   L+ L  + +  N             
Sbjct: 88  INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN------------- 134

Query: 481 DWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR 540
                  + + ++   L        ++ + +       +++R  F     L  L++  + 
Sbjct: 135 ---PYKTLGETSLFSHLTK------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 541 LNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591
           L       +  +  +SHLIL        + + +   + ++ L+L +  L  
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 17/201 (8%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIAS-IFPSLKNLSM 63
            SL  L L  N +  +   +    + T L+ L +     ++     I    F  L  L  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSL-FSHLTKLQILRV----GNMDTFTKIQRKDFAGLTFLEE 178

Query: 64  IGCEVNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
           +  + + L     +     +++ HL +           L+I  +   S++ L L  + L 
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLD 235

Query: 122 TNSSRILDRG----LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS 177
           T     L  G    L      + + I    L   +   L  ++ L  L+ S NQL  S+ 
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVP 293

Query: 178 SSPLVHLTSIEELYLSNNHFQ 198
                 LTS+++++L  N + 
Sbjct: 294 DGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 47/256 (18%), Positives = 91/256 (35%), Gaps = 29/256 (11%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
           G   ++ +L LS+N  T I+ +   L    NL+ L L S+   I+ ++     F SL +L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSD--LQRCVNLQALVLTSN--GINTIE--EDSFSSLGSL 102

Query: 62  SMIGCEVNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
             +    N L  +    F    SL  L+       L  +  + +GE+        L    
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLN-------LLGNPYKTLGETSLFSHLTKLQILR 155

Query: 120 LGTNS--SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS 177
           +G     ++I  +    L  L+ L I  +DL+   P  L ++ ++  L +   Q    + 
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214

Query: 178 SSPLVHLTSIEELYLSNNHFQI-------PISLEPFFNHSRLKSFYADNNEINAEITQSH 230
              +   +S+E L L +                         ++    +  +   +   +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 231 SLTAPNFQLSRLSLSS 246
            ++     L  L  S 
Sbjct: 275 QIS----GLLELEFSR 286

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 43/292 (14%), Positives = 94/292 (32%), Gaps = 52/292 (17%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRIL 165
              +L+ L L  + + T           SL  L+ L+++YN L          ++SL  L
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129

Query: 166 DVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAE 225
           ++  N       +S   HLT ++ L + N      I  + F   + L+    D +++ + 
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS- 188

Query: 226 ITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN 285
                                        PK L    ++ ++ L   +         ++ 
Sbjct: 189 ---------------------------YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDV 220

Query: 286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISM 345
            + +  L L +          + +     +     N+              +  ++ I+ 
Sbjct: 221 TSSVECLELRD--------TDLDTFHFSELSTGETNSLIK---------KFTFRNVKITD 263

Query: 346 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397
            +L   +      +  L  L+ S N L   +P+ +     +L+ + L  N  
Sbjct: 264 ESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 16/237 (6%)

Query: 309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLS 368
            ++            +  +PV I     +   + +  N +     +SF   + L IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 369 NNHLTGEIPEHLVVGCVNLESLALSNN----SLEGHMFSRNFNLTNLRWLQLEGNHFVGE 424
           +N L   I      G   LE L LS+N    S++   F     L  L  L L+      E
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-E 119

Query: 425 IPQ-SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
           +          L+ L+L +N+L         +L  L H+ +  N +       F  L  L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 484 QILDISDNNISGSLPSCFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
             L +  N ++   P  F  L  +  ++L  N L   L         +L  L L+ N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 10/207 (4%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           + +  N    H+P        +L  L +  N L     ++F  +  L+ LDLS+N     
Sbjct: 37  IFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 376 IPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSK 431
           +      G   L +L L       L   +F     L  L++L L+ N     +P  +   
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 432 CFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
              L  LFL+ N +S    R    L  L  +++ +N +    P  F  L  L  L +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 492 NISGSLPSCFHPL-SVEQVHLSKNMLH 517
           N+S        PL +++ + L+ N   
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 51/248 (20%), Positives = 79/248 (31%), Gaps = 59/248 (23%)

Query: 351 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFN 407
           ++P         Q + L  N ++  +P      C NL  L L +N    ++   F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 408 LTNLRWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466
           L  L  L L  N  +  +  +       L  L L+   L    P     L  LQ+     
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY----- 133

Query: 467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFF 526
                              L + DN +  +LP                         TF 
Sbjct: 134 -------------------LYLQDNALQ-ALPD-----------------------DTFR 150

Query: 527 NSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN 586
           +  +L  L L  NR++        GL  L  L+L  N +    P     L +L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 587 NSLHGSIP 594
           N+L  ++P
Sbjct: 211 NNLS-ALP 217

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +  +L  L+L SN    I  A         LE L L S +  +  +    + F  L  L 
Sbjct: 54  ACRNLTILWLHSNVLARIDAAA--FTGLALLEQLDL-SDNAQLRSVD--PATFHGLGRLH 108

Query: 63  MIGCEVNGL--VRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSI 119
            +  +  GL  +    F    +L++L ++  AL AL     +     + +L +L L G+ 
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHGNR 164

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
           +    S + +R    L  L  L +  N +    P    ++  L  L + +N L+ ++ + 
Sbjct: 165 I----SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219

Query: 180 PLVHLTSIEELYLSNNHFQ 198
            L  L +++ L L++N + 
Sbjct: 220 ALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 22/222 (9%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
             +   ++L  N  + +  A+       NL  L L S+   ++ + + A  F  L  L  
Sbjct: 31  PAASQRIFLHGNRISHVPAAS--FRACRNLTILWLHSN--VLARIDAAA--FTGLALLEQ 84

Query: 64  IGCEVNGL---VRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSI 119
           +    N     V    F     L  L ++   L  L     +     + +L+YL      
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR----GLAALQYLY----- 135

Query: 120 LGTNS-SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
           L  N+   + D     L +L  L +  N +          + SL  L +  N++   +  
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
                L  +  LYL  N+    +  E       L+    ++N
Sbjct: 195 HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 46/266 (17%), Positives = 77/266 (28%), Gaps = 65/266 (24%)

Query: 108 PSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDV 167
            + + + L G       S +      +  +L +L +  N L          +  L  LD+
Sbjct: 32  AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 168 SSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEP--FFNHSRLKSFYADNNEINAE 225
           S N    S+  +    L  +  L+L     Q    L P  F   + L+  Y  +N +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNAL--- 141

Query: 226 ITQSHSLTAPNFQ-LSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE 284
                +L    F+ L  L               L     L    +S +      P     
Sbjct: 142 ----QALPDDTFRDLGNL-------------THL----FLHGNRISSV------PERAFR 174

Query: 285 NNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNIS 344
               L +L L                          N    H+       L  L +L + 
Sbjct: 175 GLHSLDRLLL------------------------HQNRVA-HVHPHAFRDLGRLMTLYLF 209

Query: 345 MNALDGSIPSSFGNMKFLQILDLSNN 370
            N L      +   ++ LQ L L++N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 5e-19
 Identities = 51/312 (16%), Positives = 104/312 (33%), Gaps = 53/312 (16%)

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
           L  N+    +S         +       ++  +   + N     +   +   +     L 
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKW----EKQALPGENRNEAVSLLKECL---INQFSELQ 65

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF 402
           ++   L  S+P +      + +L+++ N L   +PE       +LE L   +N L     
Sbjct: 66  LNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA----SLEYLDACDNRLS---- 113

Query: 403 SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462
           +      +L+ L ++ N     +P+  +    LE +  +NN L+  +P    +L  L   
Sbjct: 114 TLPELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSLEVLS-- 166

Query: 463 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKR 522
            +  N L   +P      + L+ LD+S N +  SLP+                   +   
Sbjct: 167 -VRNNQLTF-LPE---LPESLEALDVSTNLLE-SLPAVP----------------VRNHH 204

Query: 523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLL 582
               +  + +      NR+  +I + +  L     +IL  N L   +   L +       
Sbjct: 205 ----SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 583 DLSNNSLHGSIP 594
                    S  
Sbjct: 260 HGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 3e-17
 Identities = 51/314 (16%), Positives = 94/314 (29%), Gaps = 59/314 (18%)

Query: 302 PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISM---NALDGSIPSSFGN 358
              LPI+++  L      N         +            +     N     +      
Sbjct: 2   SIMLPINNNFSLSQNSFYNT--ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-- 57

Query: 359 MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEG 418
           +     L L+  +L+  +P++L      +  L ++ N+L     S      +L +L    
Sbjct: 58  INQFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI----SLPELPASLEYLDACD 109

Query: 419 NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 478
           N     +P+  +    L+ L ++NN L+  +P     L  +       N L   +P    
Sbjct: 110 NRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALLEYIN---ADNNQLTM-LPELPT 160

Query: 479 QLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY 538
            L   ++L + +N ++  LP                               SL  LD+S 
Sbjct: 161 SL---EVLSVRNNQLT-FLPELPE---------------------------SLEALDVST 189

Query: 539 NRLNG---NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595
           N L                        N +   +P  +  L+    + L +N L   I  
Sbjct: 190 NLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 596 CLDNTTLHESYNNS 609
            L   T    Y+  
Sbjct: 249 SLSQQTAQPDYHGP 262

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 9e-15
 Identities = 72/455 (15%), Positives = 132/455 (29%), Gaps = 96/455 (21%)

Query: 141 LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ-I 199
            N  YN + G+     +         +       ++S      +    EL L+  +   +
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 200 PISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLY 259
           P +L P     ++       N                  L  L                 
Sbjct: 75  PDNLPP-----QITVLEITQN-----------------ALISLPELPA------------ 100

Query: 260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDIS 319
               LEY+D                +N    +LS + +               L  LD+ 
Sbjct: 101 ---SLEYLDAC--------------DN----RLSTLPELPA-----------SLKHLDVD 128

Query: 320 NNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH 379
           NN     +P         L  +N   N L   +P    +   L++L + NN LT  +PE 
Sbjct: 129 NNQLT-MLPELPA----LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPEL 178

Query: 380 LVVGCVNLESLALSNNSLEG--HMFSRNFNLTNLR-WLQLEGNHFVGEIPQSLSKCFVLE 436
                 +LE+L +S N LE    +  RN +      + +   N     IP+++       
Sbjct: 179 PE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233

Query: 437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE--FCQLDWLQILDISDNNIS 494
            + L +N LS +I   L   T       P+ +       +    +     +      N  
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ 293

Query: 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554
             +   +H    E+   + +    +L       + S              ++ W++ LS 
Sbjct: 294 SDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG---------FREQVAAWLEKLSA 344

Query: 555 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            + L      +  +          L   +L    L
Sbjct: 345 SAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 57/323 (17%), Positives = 94/323 (29%), Gaps = 67/323 (20%)

Query: 133 CSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYL 192
           C +     L +   +L  SLP  L     + +L+++ N L  S+   P     S+E L  
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP----ASLEYLDA 107

Query: 193 SNNHFQ-IPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
            +N    +P         + LK    DNN                 QL+ L         
Sbjct: 108 CDNRLSTLPELP------ASLKHLDVDNN-----------------QLTMLPELPA---- 140

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
                       LEY++  + ++     T L E  T L  LS+ N+ L    +LP    +
Sbjct: 141 -----------LLEYINADNNQL-----TMLPELPTSLEVLSVRNNQLTFLPELP----E 180

Query: 312 RLGMLDISNNNFRGHIPVEIGDV---LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLS 368
            L  LD+S N     +P           +        N +   IP +  ++     + L 
Sbjct: 181 SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILE 238

Query: 369 NNHLTGEIPEHLVVGCVNLESLALSNNSLEGHM-----FSRNFNLTNLRWLQLEGNHFVG 423
           +N L+       +                           R        W        V 
Sbjct: 239 DNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

Query: 424 EIPQSLSKCFVLEGLFLNNNSLS 446
           +I  +              + LS
Sbjct: 298 QIWHAFEHEEHANTFSAFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 52/292 (17%), Positives = 95/292 (32%), Gaps = 56/292 (19%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
               + L L+  N + +            +  L +  ++     L S+  +  SL+ L  
Sbjct: 58  INQFSELQLNRLNLSSLPDNL-----PPQITVLEITQNA-----LISLPELPASLEYLDA 107

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTN 123
               ++ L          SL+HLD++          L ++ E    L+Y++   + L   
Sbjct: 108 CDNRLSTL-----PELPASLKHLDVDNNQ-------LTMLPELPALLEYINADNNQLTML 155

Query: 124 SSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP--L 181
                         L+VL++  N L   LP       SL  LDVS+N L  S+ + P   
Sbjct: 156 PE--------LPTSLEVLSVRNNQLT-FLP---ELPESLEALDVSTNLLE-SLPAVPVRN 202

Query: 182 VHLTSIE-ELYLSNNHF-QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
            H    E       N    IP ++    +     +   ++N ++         +     L
Sbjct: 203 HHSEETEIFFRCRENRITHIPENI---LSLDPTCTIILEDNPLS---------SRIRESL 250

Query: 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQ 291
           S+ +    Y    I+      Q +  +  L+          W  EN      
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA-----WFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
              SL  L + +N  T +            LEY+  D++ L       +  +  SL+ LS
Sbjct: 118 LPASLKHLDVDNNQLTMLPEL------PALLEYINADNNQL-----TMLPELPTSLEVLS 166

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
           +   ++  L         +SLE LD       ++T+ L+ +        +          
Sbjct: 167 VRNNQLTFL-----PELPESLEALD-------VSTNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 123 NSSRI--LDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
             +RI  +   + SL     + +  N L   +   L+  T+           + S     
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 181 LVHLTSIE 188
            +H    +
Sbjct: 275 TLHRPLAD 282

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 73/472 (15%), Positives = 148/472 (31%), Gaps = 98/472 (20%)

Query: 138 LQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF 197
                 A  +++ +       + +L  LD  ++ +T     + +  LT + +L  ++N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 198 QIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKF 257
              I+      ++ L     D+N                 +L+ L ++            
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSN-----------------KLTNLDVT------------ 103

Query: 258 LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD 317
                 L Y++    K+     +     N  L  L+   ++L    ++ +  + +L  LD
Sbjct: 104 --PLTKLTYLNCDTNKLTKLDVS----QNPLLTYLNCARNTLT---EIDVSHNTQLTELD 154

Query: 318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 377
              N     + V        L +L+ S N +           K L  L+   N++T ++ 
Sbjct: 155 CHLNKKITKLDVT---PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD 207

Query: 378 EHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEG 437
              +   + L  L  S+N L     +    LT L +     N        +LSK   L  
Sbjct: 208 ---LNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPLTELDVSTLSK---LTT 258

Query: 438 LFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497
           L      L  +I   L + T+L +           +  +      L +LD     I+  L
Sbjct: 259 LHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-EL 312

Query: 498 PSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSH 557
                                         +  LV L L+   L   +   V   ++L  
Sbjct: 313 D--------------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKS 343

Query: 558 LILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNS 609
           L   + +++ +    + K+  L     +           L N +L  + +  
Sbjct: 344 LSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 68/447 (15%), Positives = 135/447 (30%), Gaps = 91/447 (20%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDS---SSLHISLLQSIASIFPSLKN 60
             +L +L   +++ TD+      +   T L  L   S   ++L +S          +L  
Sbjct: 41  LATLTSLDCHNSSITDMT----GIEKLTGLTKLICTSNNITTLDLSQN-------TNLTY 89

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           L+    ++  L           L +L+ +           ++     P L YL+      
Sbjct: 90  LACDSNKLTNLD----VTPLTKLTYLNCD------TNKLTKLDVSQNPLLTYLNCAR--- 136

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
             N+   +D  +     L  L+   N     L   +   T L  LD S N++T       
Sbjct: 137 --NTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT----ELD 186

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
           +     +  L    N+    I+      + +L      +N                 +L+
Sbjct: 187 VSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSN-----------------KLT 225

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
            + ++          +       L Y D S   +  E         +KL  L  +   L 
Sbjct: 226 EIDVTP-------LTQ-------LTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL 267

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
              ++ +  + +L             + V        L+ L+     +   +        
Sbjct: 268 ---EIDLTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--LSQNP 318

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH 420
            L  L L+N  LT E+    V     L+SL+  N  ++   FS    +  L         
Sbjct: 319 KLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQ 372

Query: 421 FVGEIPQSLSKCFVLEGLFLNNNSLSG 447
            +    ++L+   +   +  +     G
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 56/282 (19%), Positives = 96/282 (34%), Gaps = 30/282 (10%)

Query: 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL 392
           D   S  +    M A D     S   +  L  LD  N+ +T ++    +     L  L  
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLIC 71

Query: 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW 452
           ++N++     S     TNL +L  + N     +   ++    L  L  + N L+ K+   
Sbjct: 72  TSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD-- 122

Query: 453 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512
           +     L ++   +N L     ++      L  LD   N     L        +  +  S
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCS 178

Query: 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ 572
            N    ++       +  L  L+   N +   +   ++   QL+ L    N L     + 
Sbjct: 179 FN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---ID 228

Query: 573 LCKLNQLQLLDLSNNSLHGSIPLCLDN-TTLHESYNNSSSLD 613
           +  L QL   D S N L       L   TTLH    +   +D
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 68/409 (16%), Positives = 126/409 (30%), Gaps = 65/409 (15%)

Query: 43  LHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQ 101
               +  +       L  L+ + C  + +    G      L  L      +  L+ S   
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLS--- 82

Query: 102 IIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTS 161
                  +L YL+        +S+++ +  +  L  L  LN   N L   L   ++    
Sbjct: 83  ----QNTNLTYLAC-------DSNKLTNLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPL 128

Query: 162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNE 221
           L  L+ + N LT       + H T + EL    N     I+       ++L +     N+
Sbjct: 129 LTYLNCARNTLT----EIDVSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNK 181

Query: 222 IN----AEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 277
           I     ++    + L      +++L L+          +       L ++D S  K+  E
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKLDLNQ-------NIQ-------LTFLDCSSNKLT-E 226

Query: 278 FPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS 337
                +   T+L       + L    +L + +  +L  L     +    I +        
Sbjct: 227 ID---VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLTH---NTQ 276

Query: 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397
           L             +     +   L +LD     +T E+    +     L  L L+N  L
Sbjct: 277 LIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLNNTEL 330

Query: 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
                S   + T L+ L     H   +   S+ K   L   F       
Sbjct: 331 TELDVS---HNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 66/399 (16%), Positives = 112/399 (28%), Gaps = 105/399 (26%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSL-HISLLQSIASIFPSLK 59
           +     L  L   +N  T +     ++     L YL    ++L  I +            
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL-----DVSQNPLLTYLNCARNTLTEIDVSH--------NT 148

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
            L+ + C +N  +          L  LD                                
Sbjct: 149 QLTELDCHLNKKITKLDVTPQTQLTTLD-------------------------------- 176

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
              N    LD  +     L  LN   N++   L   L     L  LD SSN+LT      
Sbjct: 177 CSFNKITELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT----EI 227

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL 239
            +  LT +     S N    P++       S+L + +                      L
Sbjct: 228 DVTPLTQLTYFDCSVN----PLTELDVSTLSKLTTLHCIQT-----------------DL 266

Query: 240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
             + L+              H   L Y      +   E     + +NT+L  L      +
Sbjct: 267 LEIDLT--------------HNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGI 309

Query: 300 GGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNM 359
               +L +  + +L  L ++N      + V        L SL+     +      S G +
Sbjct: 310 T---ELDLSQNPKLVYLYLNNTELT-ELDVSH---NTKLKSLSCVNAHIQ-DFS-SVGKI 360

Query: 360 KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLE 398
             L     +         E L     N  ++A+S + L+
Sbjct: 361 PALNNNFEAEGQTITMPKETLT---NNSLTIAVSPDLLD 396

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.5 bits (211), Expect = 1e-17
 Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 31/221 (14%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +F       L   + TD  T     +   +++ +    ++  I  +Q I    P++  L 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT----QNELNSIDQIIA--NNSDIKSVQGIQY-LPNVTKLF 71

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
           + G   N L   +   + K+L  L ++   I  + S L    + +  LK LSL       
Sbjct: 72  LNG---NKLTDIKPLTNLKNLGWLFLDENKIK-DLSSL----KDLKKLKSLSL------- 116

Query: 123 NSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
             + I D  GL  L  L+ L +  N +       L+ +T L  L +  NQ++      PL
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 171

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
             LT ++ LYLS NH      L        L      + E 
Sbjct: 172 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 3e-15
 Identities = 49/300 (16%), Positives = 103/300 (34%), Gaps = 23/300 (7%)

Query: 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL 392
           D        N+   ++  ++      +  +  +  +N+ +   +    +    N+  L L
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFL 72

Query: 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW 452
           + N L         NL NL WL L+ N  + ++  SL     L+ L L +N +S  I   
Sbjct: 73  NGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-DIN-G 126

Query: 453 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512
           L +L +L+ + +  N +         +L  L  L + DN IS  +        ++ ++LS
Sbjct: 127 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 183

Query: 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ 572
           KN +             +L  L+L          +    L   + +     +L     + 
Sbjct: 184 KNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 573 LC------KLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDKQFEISFSIEGPQ 626
                    +        +  S     P+ +           +  L + + +S+ ++G  
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 4e-15
 Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 40/261 (15%)

Query: 7   LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGC 66
           +      S     I         F       L   S+      + A     L ++  I  
Sbjct: 1   MGETITVSTPIKQIFP----DDAFAETIKDNLKKKSV------TDAVTQNELNSIDQIIA 50

Query: 67  EVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSR 126
             + +   QG  +  ++  L + G  +   T    +   ++ +L +L L       + ++
Sbjct: 51  NNSDIKSVQGIQYLPNVTKLFLNGNKL---TDIKPL--TNLKNLGWLFL-------DENK 98

Query: 127 ILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 185
           I D   L  L  L+ L++ +N +   +   L ++  L  L + +N++T     + L  LT
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT---DITVLSRLT 153

Query: 186 SIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLS 245
            ++ L L +N       + P    ++L++ Y   N I +++     L      L  L L 
Sbjct: 154 KLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHI-SDLRALAGLK----NLDVLELF 205

Query: 246 SGYGDGFIFPKFLYHQHDLEY 266
           S         K + HQ +L  
Sbjct: 206 SQE----CLNKPINHQSNLVV 222

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.1 bits (184), Expect = 3e-14
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 26/214 (12%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +   P++  L+L+ N  TDI    + L N  NL +L LD +   I  L S+      LK 
Sbjct: 61  IQYLPNVTKLFLNGNKLTDI----KPLTNLKNLGWLFLDEN--KIKDLSSLK----DLKK 110

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           L  +  E NG+    G  H   LE L +    I  + + L      +  L  LSL     
Sbjct: 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSL----- 160

Query: 121 GTNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
               ++I D   L  L  LQ L ++ N +   L   LA + +L +L++ S +   +   +
Sbjct: 161 --EDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECL-NKPIN 215

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLK 213
              +L     +  ++     P  +    ++ +  
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 5e-14
 Identities = 45/290 (15%), Positives = 91/290 (31%), Gaps = 73/290 (25%)

Query: 156 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSF 215
                     ++    +T    +     L SI+++  +N+  +   S++       +   
Sbjct: 17  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 70

Query: 216 YADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMN 275
           + + N++                              I P  L +  +L ++ L      
Sbjct: 71  FLNGNKLTD----------------------------IKP--LTNLKNLGWLFLD----- 95

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL 335
                       K++ LS             +   K+L  L + +N       +     L
Sbjct: 96  ----------ENKIKDLS------------SLKDLKKLKSLSLEHNGISD---INGLVHL 130

Query: 336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395
           P L SL +  N +  +  +    +  L  L L +N ++ +I    + G   L++L LS N
Sbjct: 131 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKN 185

Query: 396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 445
            +          L NL  L+L     + +     S   V   +   + SL
Sbjct: 186 HIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 1e-13
 Identities = 51/275 (18%), Positives = 104/275 (37%), Gaps = 34/275 (12%)

Query: 51  IASIFP--SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMP 108
           I  IFP  +         +   +          S++ +    + I  +   +Q     +P
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQ----YLP 65

Query: 109 SLKYLSLFGSILGTNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDV 167
           ++  L L       N +++ D + L +L +L  L +  N ++  L   L ++  L+ L +
Sbjct: 66  NVTKLFL-------NGNKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116

Query: 168 SSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEIT 227
             N ++     + LVHL  +E LYL NN  +I   +      ++L +   ++N+I+ +I 
Sbjct: 117 EHNGIS---DINGLVHLPQLESLYLGNN--KI-TDITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 228 QSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 287
               LT    +L  L LS    +     + L    +L+ ++L   +   +       N  
Sbjct: 170 PLAGLT----KLQNLYLS---KNHISDLRALAGLKNLDVLELFSQECLNKPINH-QSNLV 221

Query: 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322
               +   + SL  P    I         ++  + 
Sbjct: 222 VPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 34/155 (21%)

Query: 435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
           +      +  +    P             + K  +   +     +L+ +  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554
                     SV+ +    N                +  L L+ N+L  +I   +  L  
Sbjct: 57  ----------SVQGIQYLPN----------------VTKLFLNGNKLT-DIKP-LTNLKN 88

Query: 555 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
           L  L L  N ++      L  L +L+ L L +N +
Sbjct: 89  LGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI 121

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 7e-17
 Identities = 62/259 (23%), Positives = 95/259 (36%), Gaps = 25/259 (9%)

Query: 328 PVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI-----LDLSNNHLTGEIPEHLVV 382
             +  D++ SL    +++ A        FG ++ L I     L L N  +TG  P  L+ 
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 383 GCV-NLESLALSNNSLEGHMFS----RNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEG 437
               +L  L L N S           + +    L+ L +   H +    + +     L  
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 438 LFLNNNSLSGKI-------PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 490
           L L++N   G+        P     L  L           G           LQ LD+S 
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 491 NNISGSLP--SCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW 548
           N++  +    SC  P  +  ++LS   L  Q+ +G       L  LDLSYNRL+ N S  
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK---LSVLDLSYNRLDRNPSPD 293

Query: 549 VDGLSQLSHLILGHNNLEG 567
              L Q+ +L L  N    
Sbjct: 294 --ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 56/304 (18%), Positives = 83/304 (27%), Gaps = 17/304 (5%)

Query: 155 CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKS 214
           C  N +  +    S+    G+          S+E L    +                LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 215 FYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH-DLEYVDLSHIK 273
                  I + I            L  L+L +    G   P  L     DL  ++L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 274 MNG---EFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVE 330
                             L+ LS+            +     L  LD+S+N   G   + 
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 331 ---IGDVLPSLFSLNISMN---ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGC 384
                   P+L  L +         G   +       LQ LDLS+N L            
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG-EIPQSLSKCFVLEGLFLNNN 443
             L SL LS   L+  +         L  L L  N       P  L +   +  L L  N
Sbjct: 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQ---VGNLSLKGN 306

Query: 444 SLSG 447
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 59/277 (21%), Positives = 92/277 (33%), Gaps = 23/277 (8%)

Query: 346 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFS-- 403
           N L  +    +G  + L+ L    +          ++  ++L+ L +    +   +    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 404 -RNFNLTNLRWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSLSGKIPRWLGNL---- 456
            R   ++ L+ L LE     G  P  L +     L  L L N S +     WL  L    
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWL 147

Query: 457 -TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP----SCFHPLSVEQV-H 510
              L+ + + + H       +      L  LD+SDN   G        C       QV  
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 511 LSKNMLH--GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV-DGLSQLSHLILGHNNLEG 567
           L    +     +          L  LDLS+N L         D  SQL+ L L    L+ 
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 568 EVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHE 604
              V      +L +LDLS N L    P   +   +  
Sbjct: 268 ---VPKGLPAKLSVLDLSYNRLD-RNPSPDELPQVGN 300

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 9e-12
 Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 11/201 (5%)

Query: 6   SLNTLYLSSNNFTD-IATATQELHNFTNLEYLTLDSSSLHISLLQSIASI-FPSLKNLSM 63
           SL  L + +      I      +   + L+ LTL++  +  +    +     P L  L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 64  IGCEVNGLVRGQG---FPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
                                 L+ L +  A      +F        P+L  L L  +  
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS---LNFSCEQVRVFPALSTLDLSDNPE 185

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLR---GSLPWCLANMTSLRILDVSSNQLTGSIS 177
                 I          LQVL +    +    G      A    L+ LD+S N L  +  
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 178 SSPLVHLTSIEELYLSNNHFQ 198
           +      + +  L LS    +
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 41/221 (18%), Positives = 70/221 (31%), Gaps = 25/221 (11%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTL---DSSSLHISLLQSIASIFPSLK 59
               L  L L +   T  A          +L  L L     ++    L +    + P LK
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGS 118
            LS+           Q    F +L  LD+     +        +     P+L+ L+L  +
Sbjct: 153 VLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTG--- 174
            +    S +      + V LQ L++++N LR +         + L  L++S   L     
Sbjct: 212 GM-ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 175 --------------SISSSPLV-HLTSIEELYLSNNHFQIP 200
                          +  +P    L  +  L L  N F   
Sbjct: 271 GLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 78/462 (16%), Positives = 150/462 (32%), Gaps = 72/462 (15%)

Query: 81  KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQV 140
             ++ LD++     L+ +    +   +   + + L    L     + +   L     L  
Sbjct: 3   LDIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 141 LNIAYNDLRGSLPWCLANM-----TSLRILDVSSNQLT----GSISSSPLVHLTSIEELY 191
           LN+  N+L      C+          ++ L + +  LT    G +SS+ L  L +++EL+
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 192 LSNNHFQIP----ISLEPFFNHSRLKSFYADNNEINAEITQSHSLT-APNFQLSRLSLS- 245
           LS+N         +         RL+    +   ++A   +  +           L++S 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 246 ---SGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSL 299
              +  G   +          LE + L    +  +    L   + +   LR+L+L ++ L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 300 GGP-----FQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL---PSLFSLNISMNALDGS 351
           G           +H   RL  L I           ++  VL    SL  L+++ N L   
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 352 IPSSFGNM-----KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF 406
                          L+ L + +   T          C +  S  L+ N           
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAA-------CCSHF-SSVLAQN----------- 340

Query: 407 NLTNLRWLQLEGNHFVGEIPQSLSKCF-----VLEGLFLNNNSLSGK----IPRWLGNLT 457
               L  LQ+  N       + L +       VL  L+L +  +S      +   L    
Sbjct: 341 --RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398

Query: 458 RLQHIMMPKNHLEGPIPVEFCQL-----DWLQILDISDNNIS 494
            L+ + +  N L     ++  +        L+ L + D   S
Sbjct: 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 5e-16
 Identities = 80/471 (16%), Positives = 152/471 (32%), Gaps = 72/471 (15%)

Query: 6   SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIG 65
            + +L +     +D   A + L      + + LD   L  +  + I+S            
Sbjct: 4   DIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA----- 57

Query: 66  CEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESM----PSLKYLSLFGSILG 121
                            L  L++      L    +  + + +      ++ LSL    L 
Sbjct: 58  -----------------LAELNLRSN--ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANM-----TSLRILDVSSNQLT--- 173
                +L   L +L  LQ L+++ N L  +    L          L  L +    L+   
Sbjct: 99  GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 174 -GSISSSPLVHLTSIEELYLSNNHFQ----IPISLEPFFNHSRLKSFYADNNEINAEITQ 228
              ++S  L      +EL +SNN         +      +  +L++   ++  + ++  +
Sbjct: 159 CEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 229 SHSLT-APNFQLSRLSLSS----GYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL- 282
                 A    L  L+L S      G   + P  L+    L  + +    +  +    L 
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 283 --LENNTKLRQLSLVNDSLGGP-----FQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL 335
             L     L++LSL  + LG        +  +    +L  L + + +F          VL
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 336 ---PSLFSLNISMNALDGSIPSSFG-----NMKFLQILDLSNNHLTGEIPEHL---VVGC 384
                L  L IS N L+ +               L++L L++  ++      L   ++  
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 385 VNLESLALSNNSLE---GHMFSRNF--NLTNLRWLQLEGNHFVGEIPQSLS 430
            +L  L LSNN L          +       L  L L   ++  E+   L 
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 79/445 (17%), Positives = 137/445 (30%), Gaps = 63/445 (14%)

Query: 4   FPSLNTLYLSSNNFTD-----IATATQELHNFTNLEYLTLDSSSLHISLLQSIASIF--- 55
                 + L     T+     I++A   L     L  L L S+ L    +  +       
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSA---LRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 56  -PSLKNLSMIGC---EVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESM---- 107
              ++ LS+  C        V         +L+ L +      L  + LQ++ E +    
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN--LLGDAGLQLLCEGLLDPQ 141

Query: 108 PSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLA-----NMTSL 162
             L+ L L    L   S   L   L +    + L ++ ND+  +    L      +   L
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201

Query: 163 RILDVSSNQLTG---SISSSPLVHLTSIEELYLSNNHFQ----IPISLEPFFNHSRLKSF 215
             L + S  +T          +    S+ EL L +N         +        SRL++ 
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 216 YADNNEINAEITQ--SHSLTAPNFQLSRLSLS----SGYGDGFIFPKFLYHQHDLEYVDL 269
           +     I A+        L A    L  LSL+       G   +    L     LE + +
Sbjct: 262 WIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 270 SHIKMNGEFPTWL---LENNTKLRQLSLVNDSLGGP-----FQLPIHSHKRLGMLDISNN 321
                     +     L  N  L +L + N+ L         Q        L +L +++ 
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 322 NFRGHIPVEIGDVL---PSLFSLNISMNALDGSIPSSFG-----NMKFLQILDLSNNHLT 373
           +        +   L    SL  L++S N L  +               L+ L L + + +
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

Query: 374 GEIPEHLVVGCVNLESLALSNNSLE 398
            E           L++L     SL 
Sbjct: 441 EE-------MEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 7e-13
 Identities = 73/484 (15%), Positives = 148/484 (30%), Gaps = 101/484 (20%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFF----NHSRLKSF 215
             ++ LD+   +L+ +  +  L  L   + + L +         +        +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 216 YADNNEINAEITQ--SHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIK 273
              +NE+           L  P+ ++ +LSL +                 L       + 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN---------------CCLTGAGCGVLS 106

Query: 274 MNGEFPTWLLENNTKLRQLSLVNDSLGGP-----FQLPIHSHKRLGMLDISNNNFRGHIP 328
                    L     L++L L ++ LG        +  +    RL  L +   +      
Sbjct: 107 S-------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 329 VEIGDVL---PSLFSLNISMNALDGSIPSSFG-----NMKFLQILDLSNNHLTGEIPEHL 380
             +  VL   P    L +S N ++ +           +   L+ L L +  +T +     
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----- 214

Query: 381 VVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK-----CFVL 435
              C +L    +++               +LR L L  N         L          L
Sbjct: 215 --NCRDL-CGIVASK-------------ASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 436 EGLFLNNNSLSGK----IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW-----LQIL 486
             L++    ++ K    + R L     L+ + +  N L        C+        L+ L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 487 DISDNNISGSLPSCFHPLS--------VEQVHLSKNMLHG----QLKRGTFFNSYSLVTL 534
            +   + +    +C    S        + ++ +S N L      +L +G       L  L
Sbjct: 319 WVKSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 535 DLSYNRLN----GNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-----NQLQLLDLS 585
            L+   ++     +++  +     L  L L +N L     +QL +        L+ L L 
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435

Query: 586 NNSL 589
           +   
Sbjct: 436 DIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 51/298 (17%), Positives = 80/298 (26%), Gaps = 84/298 (28%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD----GSIPSSFGNMKFLQILDLSNNH 371
           LDI           E+  +L     + +    L       I S+      L  L+L +N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 372 LTGE----IPEHLVVGCVNLESLALSNNSLE-------GHMFSRNFNLTNLRWLQLEGNH 420
           L       + + L      ++ L+L N  L                    L+ L L  N 
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELHLSDNL 124

Query: 421 FVGEIPQSLSK-----CFVLEGLFLNNNSLSGKIPRWLGN-LTRLQHIMMPKNHLEGPIP 474
                 Q L +        LE L L   SLS      L + L                  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD------------- 171

Query: 475 VEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534
                    + L +S+N+I+ +         V        +L   LK     +   L  L
Sbjct: 172 --------FKELTVSNNDINEA--------GVR-------VLCQGLKD----SPCQLEAL 204

Query: 535 DLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS 592
            L        ++   D    L  +              +     L+ L L +N L   
Sbjct: 205 KLESC----GVTS--DNCRDLCGI--------------VASKASLRELALGSNKLGDV 242

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 13/208 (6%)

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---S 396
           +L++S N L      SF +   LQ+LDLS   +   I +       +L +L L+ N   S
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 397 LEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL-SGKIPRWLGN 455
           L    FS    L++L+ L     +        +     L+ L + +N + S K+P +  N
Sbjct: 91  LALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 456 LTRLQHIMMPKNHLEGPIPVEFCQLDWLQI----LDISDNNISGSLPSCFHPLSVEQVHL 511
           LT L+H+ +  N ++     +   L  + +    LD+S N ++   P  F  + ++++ L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 512 SKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
             N L   +  G F    SL  + L  N
Sbjct: 208 DTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 57/244 (23%), Positives = 89/244 (36%), Gaps = 43/244 (17%)

Query: 352 IPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNL 408
           +P S       + LDLS N L   +  +       L+ L LS     ++E   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 409 TNLRWLQLEGNH---FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMP 465
           ++L  L L GN            LS    L+ L     +L+      +G+L  L+ + + 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSS---LQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 466 KNHL-EGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHPLSVEQVHLSKNMLHGQLKRG 523
            N +    +P  F  L  L+ LD+S N I  S+       L              Q+   
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLH-------------QMP-- 176

Query: 524 TFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD 583
                   ++LDLS N +N  I        +L  L L  N L+        +L  LQ + 
Sbjct: 177 -----LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

Query: 584 LSNN 587
           L  N
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 22/203 (10%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIAS-IF---PSL 58
           SFP L  L LS      I        + ++L  L L       + +QS+A   F    SL
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTG-----NPIQSLALGAFSGLSSL 102

Query: 59  KNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIG--ESMPSLKYLSLF 116
           + L  +   +  L       H K+L+ L++   LI       ++     ++ +L++L L 
Sbjct: 103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLI----QSFKLPEYFSNLTNLEHLDLS 157

Query: 117 GSILGTNSSRILDRGLCSLVHLQV-LNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGS 175
            + + +     L   L  +  L + L+++ N +   +         L+ L + +NQL  S
Sbjct: 158 SNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-S 214

Query: 176 ISSSPLVHLTSIEELYLSNNHFQ 198
           +       LTS+++++L  N + 
Sbjct: 215 VPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 48/244 (19%), Positives = 82/244 (33%), Gaps = 46/244 (18%)

Query: 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195
              + L++++N LR    +   +   L++LD+S  ++  +I       L+ +  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 196 HFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQ-LSRLSLSSGYGDGFIF 254
             Q  ++L  F   S L+   A             SL       L  L            
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVET-------NLASLENFPIGHLKTL------------ 126

Query: 255 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL----GGPF----QLP 306
            K L     + +  +   K+   F      N T L  L L ++ +            Q+P
Sbjct: 127 -KELN----VAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD 366
           + +      LD+S N     I       +  L  L +  N L       F  +  LQ + 
Sbjct: 177 LLNLS----LDLSLNPMN-FIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

Query: 367 LSNN 370
           L  N
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 108 PSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDV 167
             L  L L G+ + + +          L  LQ L     +L     + + ++ +L+ L+V
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSG----LSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 168 SSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEIT 227
           + N +          +LT++E L LS+N  Q  I         ++       +     + 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 228 QSHSLTAPNFQLSRLSLSS 246
                     +L  L+L +
Sbjct: 191 FIQPGAFKEIRLKELALDT 209

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 15/234 (6%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN----SLEGHMFSRNFNLTNLRWLQLE 417
              L      L   I +    G  +LE + +S N     +E  +FS   NL  L  +++E
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS---NLPKLHEIRIE 87

Query: 418 GNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN-HLEGPIPV 475
             + +  I  ++      L+ L ++N  +         +  +   + +  N ++      
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 476 EFCQL-DWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534
            F  L     IL ++ N I     S F+   +++++LS N    +L    F  +   V L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 535 DLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS 588
           D+S  R++ ++  +  GL  L  L         ++P  L KL  L    L+  S
Sbjct: 208 DISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 43/241 (17%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGN 419
           ++     + +T EIP  L     N   L         ++   FS      +L  +++  N
Sbjct: 12  RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQN 64

Query: 420 HFVGEIP----QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV 475
             +  I      +L K   +       N+L    P    NL  LQ++++    ++    V
Sbjct: 65  DVLEVIEADVFSNLPKLHEIR--IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 476 EFCQLDWLQILDISDNNISGSLPS-CFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534
                    +LDI DN    ++    F  LS E                        V L
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE-----------------------SVIL 159

Query: 535 DLSYNRLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSI 593
            L+ N +   I +   +G       +  +NNLE          +   +LD+S   +H S+
Sbjct: 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SL 217

Query: 594 P 594
           P
Sbjct: 218 P 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 17/222 (7%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI-ASIFPSLKNLS 62
             +   L         I         F +LE + +  +     +L+ I A +F +L  L 
Sbjct: 29  PRNAIELRFVLTKLRVIQKGA--FSGFGDLEKIEISQN----DVLEVIEADVFSNLPKLH 82

Query: 63  MIGCE-VNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
            I  E  N L  +  + F +  +L++L +    I        +          L +  +I
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNI 139

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
                 R    GL       +L +  N ++              +    +N L   + + 
Sbjct: 140 NIHTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPND 196

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNE 221
                +    L +S       +      N  +L++    N +
Sbjct: 197 VFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 38/284 (13%), Positives = 70/284 (24%), Gaps = 59/284 (20%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN-N 195
           +   L      LR       +    L  +++S N +   I +    +L  + E+ +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 196 HFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFP 255
           +    I+ E F N   L+     N  I         L   +                   
Sbjct: 91  NLLY-INPEAFQNLPNLQYLLISNTGI-------KHLPDVHKI----------------- 125

Query: 256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGM 315
               H      +D+                N  +  +          F           +
Sbjct: 126 ----HSLQKVLLDIQD--------------NINIHTIE------RNSFV---GLSFESVI 158

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           L ++ N  +  I     +            N L+      F       ILD+S   +   
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN 419
           +P + +     L + +  N             L  L    L   
Sbjct: 217 LPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 21/222 (9%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI-ASIFPSLKNL 61
            F  L  + +S N+  ++  A     N   L  + +       + L  I    F +L NL
Sbjct: 52  GFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRI----EKANNLLYINPEAFQNLPNL 106

Query: 62  SMIGCEVNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSI 119
             +     G+  +      H      LD++      N +   I   S   L + S+    
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-----NINIHTIERNSFVGLSFESVILW- 160

Query: 120 LGTNSSRILDRGLCSLVHLQVLNI-AYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
           L  N  + +     +   L  LN+   N+L           +   ILD+S  ++  S+ S
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219

Query: 179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
             L +L  +      N        L        L        
Sbjct: 220 YGLENLKKLRARSTYNL-----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 9/172 (5%)

Query: 438 LFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497
                + ++ +IP  L        +      L       F     L+ ++IS N++   +
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 498 PS-CFHPL-SVEQVHLSK-NMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554
            +  F  L  + ++ + K N L   +    F N  +L  L +S   +            Q
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 555 LSHLILGHNNLEGEVPVQ-LCKL-NQLQLLDLSNNSLHGSIPLCLDNTTLHE 604
              L +  N     +       L  +  +L L+ N +        + T L E
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 482 WLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL 541
             ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 10  SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV 66

Query: 542 NGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLCK-LNQLQLLDLSNNSLH----GSIPL 595
              I   V   L +L  + +   N    +  +  + L  LQ L +SN  +          
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 596 CLDNTTLHESYNNS 609
            L    L    N +
Sbjct: 127 SLQKVLLDIQDNIN 140

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 49/324 (15%), Positives = 96/324 (29%), Gaps = 85/324 (26%)

Query: 6   SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIG 65
           S        +  T+I +         N   L        + ++Q  A             
Sbjct: 10  SNRVFLCQESKVTEIPSDL-----PRNAIELRF--VLTKLRVIQKGA------------- 49

Query: 66  CEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGES----MPSLKYLSLFGSILG 121
                      F  F  LE +++    +      L++I       +P L  + +      
Sbjct: 50  -----------FSGFGDLEKIEISQNDV------LEVIEADVFSNLPKLHEIRI----EK 88

Query: 122 TNSSRILDRGLCS-LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
            N+   ++      L +LQ L I+   ++        +     +LD+  N    +I  + 
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 181 LVHLTS-IEELYLSNNHFQIPISLEP-FFNHSRLKS-FYADNNEINAEITQSHSLTAPNF 237
            V L+     L+L+ N  Q    +    FN ++L     +DNN +               
Sbjct: 149 FVGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNLEE------------- 192

Query: 238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVND 297
                          +     +       +D+S  +++   P++ LEN  KLR  S  N 
Sbjct: 193 ---------------LPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

Query: 298 SLGGPFQLPIHSHKRLGMLDISNN 321
                 +        L    ++  
Sbjct: 237 KKLPTLE----KLVALMEASLTYP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 32/237 (13%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
                + TL       T I    + +    NL  L L      I+ L  +     +L  +
Sbjct: 38  ADLDGITTLSAFGTGVTTI----EGVQYLNNLIGLEL--KDNQITDLAPLK----NLTKI 87

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
           + +    N L         +S++ LD+    I   T         + +L+ L L      
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL-----AGLSNLQVLYL------ 136

Query: 122 TNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
            + ++I +   L  L +LQ L+I    +    P  LAN++ L  L    N+++     SP
Sbjct: 137 -DLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS---DISP 190

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI-NAEITQSHSLTAPN 236
           L  L ++ E++L NN       + P  N S L      N  I N  +  +++L  PN
Sbjct: 191 LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 33/222 (14%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSL-HISLLQSIASIFPSLKNL 61
           +  +   +    +N TD  T      +   +  L+   + +  I  +Q        L NL
Sbjct: 17  ALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQY-------LNNL 65

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
             +  + N +       +   +  L++ G  +   ++        + S+K L L      
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAI-----AGLQSIKTLDL------ 114

Query: 122 TNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
             S++I D   L  L +LQVL +  N +    P  LA +T+L+ L + + Q++     +P
Sbjct: 115 -TSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS---DLTP 168

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
           L +L+ +  L   +N       + P  +   L   +  NN+I
Sbjct: 169 LANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 44/289 (15%)

Query: 335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSN 394
           L +   +    + +      +  ++  +  L      +T  I    V    NL  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKD 72

Query: 395 NSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLG 454
           N +     +   NLT +  L+L GN    +   +++    ++ L L +  ++   P  L 
Sbjct: 73  NQIT--DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 455 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKN 514
            L+ LQ + +  N +    P     L  LQ L I +  +S        PL+         
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-----LTPLA--------- 170

Query: 515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC 574
                       N   L TL    N+++ +IS  +  L  L  + L +N +    P  L 
Sbjct: 171 ------------NLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LA 214

Query: 575 KLNQLQLLDLSNNSLHGSIPLCLDN-TTLHESYNNSSSLDKQFEISFSI 622
             + L ++ L+N ++        +N    +     S +      IS + 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 32/228 (14%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +    +L  L L  N  TD+      L N T +  L L  + L         S    L++
Sbjct: 59  VQYLNNLIGLELKDNQITDL----APLKNLTKITELELSGNPL------KNVSAIAGLQS 108

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           +  +      +          +L+ L ++   I  N S L      + +L+YLS+     
Sbjct: 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISPL----AGLTNLQYLSI----- 158

Query: 121 GTNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
              ++++ D   L +L  L  L    N +    P  LA++ +L  + + +NQ++     S
Sbjct: 159 --GNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS---DVS 211

Query: 180 PLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEIT 227
           PL + +++  + L+N      I+ +P F ++ L           A I 
Sbjct: 212 PLANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 49/291 (16%), Positives = 101/291 (34%), Gaps = 27/291 (9%)

Query: 122 TNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
           T  + I       +L +   +    +++  ++    A++  +  L      +T   +   
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEG 58

Query: 181 LVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS 240
           + +L ++  L L +N       L P  N +++       N +   ++    L      + 
Sbjct: 59  VQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIK 110

Query: 241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 300
            L L+S           L    +L+ + L   ++    P   L   T L+ LS+ N  + 
Sbjct: 111 TLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS 164

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
                P+ +  +L  L   +N      P+     LP+L  +++  N +  S  S   N  
Sbjct: 165 DL--TPLANLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKNNQI--SDVSPLANTS 217

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNL 411
            L I+ L+N  +T +   +     V       S   +     S N    + 
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 54/276 (19%), Positives = 115/276 (41%), Gaps = 37/276 (13%)

Query: 50  SIASIFP--SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESM 107
           +I  IFP  +L N   I    + +           +  L   G  +    + ++ + + +
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV----TTIEGV-QYL 62

Query: 108 PSLKYLSLFGSILGTNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILD 166
            +L  L L         ++I D   L +L  +  L ++ N L+      +A + S++ LD
Sbjct: 63  NNLIGLEL-------KDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLD 113

Query: 167 VSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEI 226
           ++S Q+T     +PL  L++++ LYL  N  QI  ++ P    + L+     N +++ ++
Sbjct: 114 LTSTQIT---DVTPLAGLSNLQVLYLDLN--QI-TNISPLAGLTNLQYLSIGNAQVS-DL 166

Query: 227 TQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 286
           T   +L+    +L+ L       +       L    +L  V L + +++   P   L N 
Sbjct: 167 TPLANLS----KLTTLKAD---DNKISDISPLASLPNLIEVHLKNNQISDVSP---LANT 216

Query: 287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322
           + L  ++L N ++      P+  +  L + ++    
Sbjct: 217 SNLFIVTLTNQTI---TNQPVFYNNNLVVPNVVKGP 249

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 32/236 (13%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +F       L   + TD  T     +   +++ +    ++  I  +Q I      L N++
Sbjct: 22  AFAETIKDNLKKKSVTDAVT----QNELNSIDQIIA--NNSDIKSVQGIQY----LPNVT 71

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
            +    N L   +   + K+L  L ++   +  + S L    + +  LK LSL       
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSL------- 119

Query: 123 NSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
             + I D  GL  L  L+ L +  N +       L+ +T L  L +  NQ++      PL
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 174

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI-NAEITQSHSLTAPN 236
             LT ++ LYLS NH      L        L      + E  N  I    +L  PN
Sbjct: 175 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 42/319 (13%), Positives = 100/319 (31%), Gaps = 73/319 (22%)

Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
              +       N+    +  ++      + S+  +  +++ +    S   + +L ++ +L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGD 250
           +L+ N       ++P  N   L   + D N++  +++    L     +L  LSL      
Sbjct: 74  FLNGNKLT---DIKPLANLKNLGWLFLDENKVK-DLSSLKDLK----KLKSLSLE----- 120

Query: 251 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSH 310
                                              +  +  ++             +   
Sbjct: 121 -----------------------------------HNGISDIN------------GLVHL 133

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
            +L  L + NN       + +   L  L +L++  N +  S       +  LQ L LS N
Sbjct: 134 PQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN 188

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS 430
           H++ ++    + G  NL+ L L +        +   NL     ++      V     S  
Sbjct: 189 HIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 431 KCFVLEGLFLNNNSLSGKI 449
             +    +  +    + ++
Sbjct: 246 GDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 44/232 (18%), Positives = 88/232 (37%), Gaps = 41/232 (17%)

Query: 358 NMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE 417
                   +L    +T  + ++      +++ +  +N+ ++         L N+  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLN 76

Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 477
           GN  + +I   L+    L  LFL+ N +   +   L +L +L+ + +  N +     +  
Sbjct: 77  GNK-LTDIK-PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLV- 131

Query: 478 CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537
             L  L+ L + +N I+         LS                         L TL L 
Sbjct: 132 -HLPQLESLYLGNNKIT-----DITVLS---------------------RLTKLDTLSLE 164

Query: 538 YNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            N+++ +I   + GL++L +L L  N++       L  L  L +L+L +   
Sbjct: 165 DNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 26/204 (12%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +   P++  L+L+ N  TDI    + L N  NL +L LD +   +  L S+      LK 
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI----KPLANLKNLGWLFLDEN--KVKDLSSLK----DLKK 113

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           L  +  E NG+    G  H   LE L +    I  + + L      +  L  LSL     
Sbjct: 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSL----- 163

Query: 121 GTNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 179
               ++I D   L  L  LQ L ++ N +       LA + +L +L++ S +   +   +
Sbjct: 164 --EDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPIN 218

Query: 180 PLVHLTSIEELYLSNNHFQIPISL 203
              +L     +  ++     P  +
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 24/195 (12%)

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDV-----LPS 337
           ++    + +L L  + L      P+ + K LG L +  N         + D+     L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397
           L SL++  N +  S  +   ++  L+ L L NN +T       +     L++L+L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQI 168

Query: 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT 457
                     LT L+ L L  NH + ++ ++L+    L+ L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 458 RLQHIMMPKNHLEGP 472
               +      L  P
Sbjct: 225 VPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 34/183 (18%), Positives = 73/183 (39%), Gaps = 18/183 (9%)

Query: 435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
                L   S++  +      L  +  I+   + ++    +++     +  L ++ N ++
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFLNGNKLT 81

Query: 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSY-SLVTLDLSYNRLNGNISDWVDGLS 553
             +    +  ++  + L +N    ++K  +       L +L L +N ++ +I+  +  L 
Sbjct: 82  -DIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLP 134

Query: 554 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHE---SYNNSS 610
           QL  L LG+N +       L +L +L  L L +N +   I      T L     S N+ S
Sbjct: 135 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS 191

Query: 611 SLD 613
            L 
Sbjct: 192 DLR 194

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 49/163 (30%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
              L L+ N L       L   TRL  + + +  L   + V    L  L  LD+S N + 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQLQ 90

Query: 495 GSLPSCFHPLSVEQV-HLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV-DGL 552
            SLP     L    V  +S N L   L  G       L  L L  N L   +   +    
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 553 SQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIP 594
            +L  L L +NNL  E+P  L   L  L  L L  NSL+ +IP
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 20/188 (10%)

Query: 287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN 346
                L L  + L       +  + RL  L++        + V     LP L +L++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 347 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFS 403
            L  S+P     +  L +LD+S N LT  +P   + G   L+ L L  N   +L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 404 RNFNLTNLRWLQLEGNHFVGEIP----QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
                  L  L L  N+   E+P      L     L+ L L  NSL   IP+       L
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLEN---LDTLLLQENSLYT-IPKGFFGSHLL 197

Query: 460 QHIMMPKN 467
               +  N
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 45/221 (20%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
                   L+LS N     + AT  L  +T L  L LD + L      +   +  +L  L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRAEL------TKLQVDGTLPVL 79

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
             +    N L                            L ++G+++P+L  L +  + L 
Sbjct: 80  GTLDLSHNQL--------------------------QSLPLLGQTLPALTVLDVSFNRLT 113

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSP 180
           +     L      L  LQ L +  N+L+ +LP   L     L  L +++N LT  + +  
Sbjct: 114 SLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167

Query: 181 LVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNN 220
           L  L +++ L L  N    IP   + FF    L   +   N
Sbjct: 168 LNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 50/236 (21%), Positives = 74/236 (31%), Gaps = 62/236 (26%)

Query: 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195
               +L+++ N L       L   T L  L++   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 196 HFQIPISLEPFFNH-SRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIF 254
             Q   SL         L       N +                    SL  G   G   
Sbjct: 88  QLQ---SLPLLGQTLPALTVLDVSFNRLT-------------------SLPLGALRGLGE 125

Query: 255 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLG 314
            + LY    L+  +L  +      P  LL    KL +LSL                    
Sbjct: 126 LQELY----LKGNELKTL------PPGLLTPTPKLEKLSL-------------------- 155

Query: 315 MLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
               +NNN    +P  + + L +L +L +  N+L  +IP  F     L    L  N
Sbjct: 156 ----ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.1 bits (174), Expect = 4e-13
 Identities = 67/479 (13%), Positives = 125/479 (26%), Gaps = 46/479 (9%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDS-SSLHISLLQSIASIFPSLKNL 61
           +   L +++      +D+           +LE L LD  S      L SI +    +K L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 62  SMIGCEVNGLVRGQGF----PHFKSLEHLDMEGA-LIALNTSFLQIIGESMPSLKYLSLF 116
            M     +    G+       H  SLE L+        ++   L+ I  +  SL  + + 
Sbjct: 170 LMEESSFSEK-DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 117 GSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
              +         +   +L      ++  +         L     L  L +S   +  + 
Sbjct: 229 DFEILELVG--FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY--MGPNE 284

Query: 177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQS--HSLTA 234
                     I +L L     +             L+     N      I       L  
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-----IGDRGLEVLAQ 339

Query: 235 PNFQLSRLSLSSGYGDGFIFPK-----------FLYHQHDLEYVDLSHIKMNGEFPTWLL 283
              QL RL +  G  +  +  +                 +LEY+ +    +  E    + 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 284 ENNTKLRQLSLVN---------DSLGGPFQLPIHSHKRLGMLDISNN--NFRGHIPVEIG 332
                L    LV            L    +  +   K+L                   IG
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 333 DVLPSLFSLNISMNAL-DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLA 391
              P++  + +      D  +         LQ L++     +       V    +L  L 
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 392 LSNNSL---EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 447
           +           +        N+  +       V +  +            L   SL+G
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAH--ILAYYSLAG 576

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 72/468 (15%), Positives = 137/468 (29%), Gaps = 58/468 (12%)

Query: 27  LHNFTNLEYLTL--------------DSSSLHISLLQSIASIFPSLKNLSMIGCEV-NGL 71
              F NL  L L              +        +  I++    LK++      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 72  VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRG 131
           +          LE L ++       T  L  I      +K L +  S       + L   
Sbjct: 129 LDRLAKARADDLETLKLDKC-SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 132 LCSLVHLQVLNIAYNDLRG----SLPWCLANMTSLRILDVSS-NQLTGSISSSPLVHLTS 186
                 L+VLN    +        L     N  SL  + V     L          +L  
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247

Query: 187 IEELYLSN--NHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL 244
                L+      +  ++L       RL   Y   NE+      +  +        +L L
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR-------KLDL 300

Query: 245 SSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSL---VNDSLGG 301
                +       +    +LE ++  ++  +      L +   +L++L +    ++    
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGME 359

Query: 302 PFQLPIHSH---------KRLGMLDISNNNFRGHIPVEIGDVLPSLFSL---------NI 343
             +  +            + L  + +  ++        IG  L +L             I
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 344 SMNALDGSIPSSFGNMKFLQILDLSNN--HLTGEIPEHLVVGCVNLESLALSN--NSLEG 399
           +   LD  + S     K L+          LT     ++     N+  + L     S EG
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGE-IPQSLSKCFVLEGLFLNNNSLS 446
            +   +    NL+ L++ G  F    I  +++K   L  L++     S
Sbjct: 480 -LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 66/447 (14%), Positives = 124/447 (27%), Gaps = 72/447 (16%)

Query: 31  TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEG 90
            +     +  +  + +    ++  FP+L++L + G            P       +    
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK-----------PRAAMFNLIPEN- 95

Query: 91  ALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG 150
                 T ++  I  ++  LK +     I+       L +       L+ L +       
Sbjct: 96  -WGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD--DLETLKLDKCSGFT 152

Query: 151 --SLPWCLANMTSLRILDVSSN---QLTGSISSSPLVHLTSIEELYLSNNHFQI--PISL 203
              L   + +   ++ L +  +   +  G        H TS+E L      F    P  L
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 204 EPFFNHSR-LKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH 262
           E    + R L S    +     EI +          L      S   D  +  K++    
Sbjct: 213 ETIARNCRSLVSVKVGDF----EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268

Query: 263 DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322
             +   L    M       L     ++R+                        LD+    
Sbjct: 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRK------------------------LDLLYAL 304

Query: 323 FRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP----- 377
                   +    P+L  L       D  +       K L+ L +        +      
Sbjct: 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

Query: 378 ------EHLVVGCVNLESLALS-----NNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP 426
                   L  GC  LE +A+      N SLE  + +   NL + R + L+    + ++P
Sbjct: 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLE-SIGTYLKNLCDFRLVLLDREERITDLP 423

Query: 427 QSLSKCFVLEGL----FLNNNSLSGKI 449
                  +L G             G +
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLRQGGL 450

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 29/177 (16%), Positives = 67/177 (37%), Gaps = 15/177 (8%)

Query: 50  SIASIFPS-LKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMP 108
           S A+I  + + +L+ I      +    G  +  +++ L +       N + +      + 
Sbjct: 34  STANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYNPI----SGLS 88

Query: 109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVS 168
           +L+ L + G     + +      L  L  L +L+I+++    S+   +  +  +  +D+S
Sbjct: 89  NLERLRIMG----KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 169 SNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAE 225
            N     I   PL  L  ++ L +  +            +  +L   YA +  I  +
Sbjct: 145 YNGAITDI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 355 SFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL 414
           +   M  L  + L+N ++T       +    N++ L ++N       ++    L+NL  L
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP 474
           ++ G     +   +LS    L  L +++++    I   +  L ++  I +  N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 475 VEFCQLDWLQILDISDNNIS 494
                L  L+ L+I  + + 
Sbjct: 154 -PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
           +   + L +L ++   +       +     L +LDIS++     I  +I   LP + S++
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395
           +S N     I      +  L+ L++  + +        +     L  L   + 
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 73/224 (32%)

Query: 157 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFY 216
           A M SL  + +++  +T     + + +  +I++L ++N H     +  P    S L+   
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 217 ADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 276
                                 ++   + +                              
Sbjct: 95  IMGK-----------------DVTSDKIPN------------------------------ 107

Query: 277 EFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDV-- 334
                 L   T L  L + + +        I++  ++  +D+S N         I D+  
Sbjct: 108 ------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMP 154

Query: 335 ---LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
              LP L SLNI  + +         +   L  L   +  + G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 16/193 (8%), Positives = 55/193 (28%), Gaps = 65/193 (33%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
             ++  L +++ + T+       +   +NLE L +    +    + +++     L +L++
Sbjct: 65  AHNIKDLTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKIPNLS----GLTSLTL 116

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTN 123
           +    +                                     +  +             
Sbjct: 117 LDISHS-------------------------------AHDDSILTKIN------------ 133

Query: 124 SSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 183
                     +L  +  ++++YN     +   L  +  L+ L++  + +        +  
Sbjct: 134 ----------TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DYRGIED 179

Query: 184 LTSIEELYLSNNH 196
              + +LY  +  
Sbjct: 180 FPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 24/161 (14%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 435 LEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
           L  + L N +++      +     ++ + +   H     P+    L  L+ L I   +++
Sbjct: 46  LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVT 101

Query: 495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554
                    L+                        SL  LD+S++  + +I   ++ L +
Sbjct: 102 SDKIPNLSGLT------------------------SLTLLDISHSAHDDSILTKINTLPK 137

Query: 555 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL 595
           ++ + L +N    ++   L  L +L+ L++  + +H    +
Sbjct: 138 VNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 16/116 (13%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 474 PVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVT 533
            +   Q++ L  + +++ N++  L    +  +++ + ++                 +L  
Sbjct: 37  NITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLER 92

Query: 534 LDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
           L +    +  +    + GL+ L+ L + H+  +  +  ++  L ++  +DLS N  
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 20/220 (9%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
             +   L+    +         EL +   L+ L  ++    ++++         ++ L  
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-------MRALDP 397

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTN 123
           +  E   L       +F +L+ +D      A               LK       +L   
Sbjct: 398 LLYEKETL------QYFSTLKAVDPMR--AAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 124 SSRILD-RGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV 182
              +     L  L+ +  L++++N LR +LP  LA +  L +L  S N L    +   + 
Sbjct: 450 HKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVA 505

Query: 183 HLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
           +L  ++EL L NN  Q   +++P  +  RL       N +
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 55/324 (16%), Positives = 101/324 (31%), Gaps = 21/324 (6%)

Query: 278 FPTWLL-----ENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIG 332
           +  WLL      +      +S     L   F  P+    R+G L +  +     +     
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN------ 386
           D       + +              +   +      +      + +     C +      
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
           L    LS       + S   +   L+ L+ E    +  I   +     L+ L     +L 
Sbjct: 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRA---LDPLLYEKETLQ 406

Query: 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506
                   +  R  ++   ++       V   +   +++L ++  +++  L      L V
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLV 465

Query: 507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566
             + LS N L   L          L  L  S N L  N+   V  L +L  L+L +N L+
Sbjct: 466 THLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

Query: 567 G-EVPVQLCKLNQLQLLDLSNNSL 589
                  L    +L LL+L  NSL
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 36/290 (12%), Positives = 86/290 (29%), Gaps = 29/290 (10%)

Query: 152 LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSR 211
               L   + +  L +  ++   S+             ++L +          P      
Sbjct: 261 FSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRV 320

Query: 212 LKSFYADNNEINAEITQSHSLTAPNFQLSRL-SLSSGYGDGFIFPKFLYHQHDLEYVDLS 270
           + +      E      +       +    +L           +    L    +L+ ++  
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE 380

Query: 271 HIKM---------NGEFPTWLLENNTKLRQLSLVN-----------DSLGGPFQLPIHSH 310
           +              +   +  E       L  V+                   +    +
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
             + +L +++ +      +   + L  +  L++S N L  ++P +   ++ L++L  S+N
Sbjct: 441 ADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGN 419
            L   +    V     L+ L L NN L+     +   +   L  L L+GN
Sbjct: 497 ALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 44/315 (13%), Positives = 100/315 (31%), Gaps = 43/315 (13%)

Query: 184 LTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLS 243
           + ++  +           + +     S +         +N ++ Q           S+  
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 244 LSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF 303
                     + +       L   +LS  K         LE+  +L++L   N       
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTI 388

Query: 304 QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ 363
            L + +   L     +   F     ++  D + + +  ++    L  +          ++
Sbjct: 389 ILLMRALDPLLYEKETLQYFST---LKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVR 444

Query: 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG 423
           +L L++  LT  +    +   + +  L LS+N L                          
Sbjct: 445 VLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR------------------------- 476

Query: 424 EIPQSLSKCFVLEGLFLNNN---SLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPVEFCQ 479
            +P +L+    LE L  ++N   ++ G     + NL RLQ +++  N L+          
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 480 LDWLQILDISDNNIS 494
              L +L++  N++ 
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
             +  LD+S+N  R  +P  +   L  L  L  S NAL+ ++     N+  LQ L L NN
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNN 518

Query: 371 HLTG-EIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL 416
            L      + LV  C  L  L L  NSL      +      L  +  
Sbjct: 519 RLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           +     +  L LS N    +      L     LE L    S   +  +  +A+  P L+ 
Sbjct: 459 LEQLLLVTHLDLSHNRLRAL---PPALAALRCLEVLQA--SDNALENVDGVAN-LPRLQE 512

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYL 113
           L +    +      Q       L  L+++G  +       + + E +PS+  +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +   L T+ L       +    + L  F+ L+ +    ++    L          LK   
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 63  MIGCEV----NGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGS 118
                +      L           + HLD+    +    +    +  ++  L+ L     
Sbjct: 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL---RALPPAL-AALRCLEVLQASD- 495

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRILDVSSNQLT 173
               N+   +D G+ +L  LQ L +  N L+  +    L +   L +L++  N L 
Sbjct: 496 ----NALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 66/457 (14%), Positives = 133/457 (29%), Gaps = 61/457 (13%)

Query: 5   PSLNTLYLSSNNFTDIATATQE--LHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           P      L  + +        E    ++T LE + L    +    L+ IA  F + K L 
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 63  MIGCE------VNGLVRG-----------------------QGFPHFKSLEHLDMEGALI 93
           +  CE      +  +                               + SL  L++     
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 94  ALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQV---LNIAYNDLRG 150
            ++ S L+ +    P+LK L L  ++     + +L +    L  L           D+  
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYS 255

Query: 151 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHS 210
            L   L+    LR L    +    +   +     + +  L LS    Q    ++      
Sbjct: 256 GLSVALSGCKELRCLSGFWD-AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

Query: 211 RLKSFYADNN----EINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI----FPKFLYHQH 262
           +L+  +  +      +    +    L     ++          +  +             
Sbjct: 315 KLQRLWVLDYIEDAGLEVLASTCKDLR--ELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 263 DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322
            LE V     +M       +  N   + +  L       P       +  L  LDI    
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP------DYLTLEPLDIG--- 423

Query: 323 FRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVV 382
                   I +    L  L++S    D          K +++L ++    +     H++ 
Sbjct: 424 -----FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478

Query: 383 GCVNLESLALSN-NSLEGHMFSRNFNLTNLRWLQLEG 418
           GC +L  L + +    +  + +    L  +R L +  
Sbjct: 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 64/415 (15%), Positives = 126/415 (30%), Gaps = 79/415 (19%)

Query: 28  HNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLD 87
           +         +   + +     ++   FP ++++ + G            PHF     + 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-----------PHFADFNLVP 86

Query: 88  MEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLV----HLQVLNI 143
                      +++ +  S   L+ + L           + D  L  +     + +VL +
Sbjct: 87  DG--WGGYVYPWIEAMSSSYTWLEEIRL-------KRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 144 AYNDL--RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL----TSIEELYLSNNHF 197
           +  +      L    A   +L+ LD+  + +   +S   L H     TS+  L +S    
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 198 QI-PISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPK 256
           ++   +LE                                  L  L L+       +   
Sbjct: 197 EVSFSALERLVTRCP--------------------------NLKSLKLNRAVPLEKLAT- 229

Query: 257 FLYHQHDLEYVDLSHIKMNGEFPTW-----LLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
            L     LE +             +      L    +LR LS   D++            
Sbjct: 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLS--- 368
           RL  L++S    + +  V++    P L  L +     D  +       K L+ L +    
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349

Query: 369 ------NNHLTGEIPEHLVVGCVNLESL-----ALSNNSLEGHMFSRNFNLTNLR 412
                 N  LT +    + +GC  LES+      ++N +L   +     N+T  R
Sbjct: 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFR 403

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 483 LQILDISDNNISGSLPS--CFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
             +LD+S NN+S  L +      L+ +  + LS N L+  +    F    +L  LDLS N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
            L+         L  L  L+L +N++          + QLQ L LS N +    P
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEG 418
             +LDLS+N+L+    E       NL SL LS+N    +    F     + NLR+L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 419 NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-- 476
           NH         S    LE L L NN +         ++ +LQ + + +N +    PVE  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 477 --FCQLDWLQILDISDNNISGSLPSCFHPLS---VEQVHLSKNMLH 517
               +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 50/209 (23%), Positives = 73/209 (34%), Gaps = 37/209 (17%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL----EGHMFSRNFNLTNLRWLQLEG 418
            IL  S   L   +P+ L         L LS+N+L         +    LTNL  L L  
Sbjct: 21  NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 419 NHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE- 476
           NH +  I  ++      L  L L++N L         +L  L+ +++  NH+   +    
Sbjct: 74  NH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNA 131

Query: 477 FCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL 536
           F  +  LQ L +S N IS          +     L                   L+ LDL
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGN----KLP-----------------KLMLLDL 170

Query: 537 SYNRLNGNISDWVDGLSQLSHLILG-HNN 564
           S N+L       +  L       L  HNN
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 120 LGTNSSRILDRG--LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS 177
           L  N+   L        L +L  L +++N L          + +LR LD+SSN L  ++ 
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLD 104

Query: 178 SSPLVHLTSIEELYLSNNHFQIPISLEP--FFNHSRLKSFYADNNEI 222
                 L ++E L L NNH      ++   F + ++L+  Y   N+I
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 46/214 (21%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
                 L LS NN + +  A       TNL  L L  +  H++ + S A           
Sbjct: 38  PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHN--HLNFISSEA----------- 83

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
                        F    +L +LD+    L  L+          + +L+ L L+      
Sbjct: 84  -------------FVPVPNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYN----- 121

Query: 123 NSSRILDRG-LCSLVHLQVLNIAYNDLRGSLPW----CLANMTSLRILDVSSNQLTGSIS 177
           N   ++DR     +  LQ L ++ N +    P         +  L +LD+SSN+L   + 
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLP 179

Query: 178 SSPLVHLTSI--EELYLSNNHFQIPISLEPFFNH 209
            + L  L +     LYL NN  +    L   F+H
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSH 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 17/180 (9%)

Query: 48  LQSI-ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGE 105
           L ++  S+      L +    ++ L          +L  L +    L  +++        
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---- 85

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRI 164
            +P+L+YL L  + L T    +       L  L+VL +  N +   +      +M  L+ 
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSD----LQALEVLLLYNNHIV-VVDRNAFEDMAQLQK 140

Query: 165 LDVSSNQLTGSISS---SPLVHLTSIEELYLSNNHFQ-IPISLEPFFNHSRLKSFYADNN 220
           L +S NQ++             L  +  L LS+N  + +P++             Y  NN
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 46/283 (16%), Positives = 85/283 (30%), Gaps = 41/283 (14%)

Query: 3   SFPSLNTLYLSSNNFTDIATAT--QELHNFTNLEYLTL------DSSSLHISLLQSIASI 54
              S+  + LS N     A     + + +  +LE                   L+ +   
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 55  FPSLKNLSMIGCEVNGL----VR--GQGFPHFKSLEHLDM-------EGALI---ALNTS 98
                 L  +    N                   LEHL +       +       AL   
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 99  FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR-----GSLP 153
            +    ++ P L+ +    + L   S +   +   S   L  + +  N +R       L 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 154 WCLANMTSLRILDVSSNQLT--GSIS-SSPLVHLTSIEELYLSNNHFQ------IPISLE 204
             LA    L++LD+  N  T  GS + +  L    ++ EL L++          +  +  
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 205 PFFNHSRLKSFYADNNEINAEITQ--SHSLTAPNFQLSRLSLS 245
              N   L++     NEI  +  +     +      L  L L+
Sbjct: 270 KLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 51/330 (15%), Positives = 104/330 (31%), Gaps = 60/330 (18%)

Query: 109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG----SLPWCLANMTSLRI 164
           S++  SL    + T   + +   L     ++ + ++ N +       L   +A+   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 165 LDVSSNQLTGSISSSP---------LVHLTSIEELYLSNNHFQIPISLEPFF----NHSR 211
            + S           P         L+    +  + LS+N F  P + EP       H+ 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-PTAQEPLIDFLSKHTP 123

Query: 212 LKSFYADNNEINAEITQ--SHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDL 269
           L+  Y  NN +  +     + +L          +                    L  +  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-----------------LRSIIC 166

Query: 270 SHIKMNGEFPTWL---LENNTKLRQLSLVNDSLG-----GPFQLPIHSHKRLGMLDISNN 321
              ++            +++  L  + +V + +            +   + L +LD+ +N
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 322 NFRGHIPVEIGDVL---PSLFSLNISMNAL--DGSIP-----SSFGNMKFLQILDLSNNH 371
            F       +   L   P+L  L ++   L   G+       S   N+  LQ L L  N 
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNE 285

Query: 372 LTGE----IPEHLVVGCVNLESLALSNNSL 397
           +  +    +   +     +L  L L+ N  
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 61/285 (21%)

Query: 362 LQILDLSNNHLTGEIPEHLV---VGCVNLESLALSNNSLE-------GHMFSRNFNLTNL 411
           ++   L  + +T E  + +    +   +++ + LS N++            +   +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 412 RWLQLEGNHFVGEIP-------QSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQ 460
            +  +       EIP       Q+L KC  L  + L++N+        +  +L   T L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 461 HIMMPKNHL-------------EGPIPVEFCQLDWLQILDISDNNI--------SGSLPS 499
           H+ +  N L             E  +  +      L+ +    N +        + +  S
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 500 CFHPLSVEQVHLSKNMLHGQ-----LKRGTFFNSYSLVTLDLSYNRLNGN----ISDWVD 550
                 +  V + +N +  +     L  G  +    L  LDL  N         ++  + 
Sbjct: 186 H---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALK 241

Query: 551 GLSQLSHLILGHNNLEGEVPVQLCKL------NQLQLLDLSNNSL 589
               L  L L    L       +           LQ L L  N +
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 53/367 (14%), Positives = 108/367 (29%), Gaps = 91/367 (24%)

Query: 286 NTKLRQLSLVNDSLGG----PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL---PSL 338
              +   SL  D++           +     +  + +S N         + + +     L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 339 FSLNISMNALD----------GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG---CV 385
                S                 +  +      L  + LS+N       E L+       
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 386 NLESLALSNNSL-------------EGHMFSRNFNLTNLRWLQLEGNHF----VGEIPQS 428
            LE L L NN L             E  +  +  N   LR +    N      + E  ++
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 429 LSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 487
                +L  + +  N +  + I   L                             L++LD
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEG--------------------LAYCQELKVLD 222

Query: 488 ISDNNI--------SGSLPSCFHPLSVEQVHLSKNMLHGQ--------LKRGTFFNSYSL 531
           + DN          + +L S     ++ ++ L+  +L  +          +     +  L
Sbjct: 223 LQDNTFTHLGSSALAIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLE---NIGL 276

Query: 532 VTLDLSYNRLNGN----ISDWV-DGLSQLSHLILGHNNL--EGEVPVQLCKL----NQLQ 580
            TL L YN +  +    +   + + +  L  L L  N    E +V  ++ ++     + +
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 336

Query: 581 LLDLSNN 587
           L +L + 
Sbjct: 337 LDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 54/317 (17%), Positives = 99/317 (31%), Gaps = 53/317 (16%)

Query: 105 ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR----------GSLPW 154
               S+K + L G+ +GT ++R L   + S   L++   +                 L  
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 155 CLANMTSLRILDVSSNQLTGSISSSPLVHL----TSIEELYLSNNHF------------Q 198
            L     L  + +S N   G  +  PL+      T +E LYL NN              Q
Sbjct: 89  ALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 199 IPISLEPFFNHSRLKSFYADNNEINAEITQ--SHSLTAPNFQLSRLSLSS----GYGDGF 252
                +   N   L+S     N +     +  + +    +  L  + +        G   
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSHRLLHTVKMVQNGIRPEGIEH 206

Query: 253 IFPKFLYHQHDLEYVDLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSLGGP------F 303
           +  + L +  +L+ +DL          + L   L++   LR+L L +  L          
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 304 QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL----PSLFSLNISMNALD------GSIP 353
                 +  L  L +  N         +  V+    P L  L ++ N           I 
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326

Query: 354 SSFGNMKFLQILDLSNN 370
             F      ++ +L + 
Sbjct: 327 EVFSTRGRGELDELDDM 343

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 47/241 (19%), Positives = 78/241 (32%), Gaps = 60/241 (24%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN----SLEGHMFSRNFNLTNLRWLQLE 417
            Q L L   HL   IP H      N+  + +S +     LE H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPVE 476
               +  I                        P  L  L  L+ + +    L+  P   +
Sbjct: 89  NTRNLTYID-----------------------PDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 477 FCQLDWLQILDISDNNISGSLPS-CFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLD 535
               D   IL+I+DN    S+P   F  L  E                        +TL 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-----------------------TLTLK 162

Query: 536 LSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCK--LNQLQLLDLSNNSLHGSI 593
           L  N    ++  +    ++L  + L  N     +         +   LLD+S  S+  ++
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL 220

Query: 594 P 594
           P
Sbjct: 221 P 221

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 14/199 (7%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPS-SFGNMKFLQILDLSNNHLTG 374
           L +   + R  IP      LP++  + +S++     + S SF N+  +  +++ N     
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 375 EIPEHLVVGCVNLESLALSNNSLEG-HMFSRNFNLTNLRWLQLEGNHFVGEIP----QSL 429
            I    +     L+ L + N  L+     ++ ++      L++  N ++  IP    Q L
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQL-DWLQILD 487
                   L L NN  +  +  +  N T+L  + + KN     I  + F  +     +LD
Sbjct: 155 CN--ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 488 ISDNNISGSLPS-CFHPLS 505
           +S  +++ +LPS     L 
Sbjct: 212 VSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 13/157 (8%)

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIP--SSFGNMKFLQILDLSN 369
           ++  ++I N     +I  +    LP L  L I    L    P  +   +     IL++++
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITD 139

Query: 370 NHLTGEIPEHLVVGCVN-LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS 428
           N     IP +   G  N   +L L NN     +    FN T L  + L  N ++  I   
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID-- 196

Query: 429 LSKCF-----VLEGLFLNNNSLSGKIPRWLGNLTRLQ 460
               F         L ++  S++    + L +L  L 
Sbjct: 197 -KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 483 LQILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL 541
            Q L + + ++       F  L  + ++++S ++   QL+  +F+N   +  +++   R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 542 NGNISDWV-DGLSQLSHLILGHNNLEGEVP--VQLCKLNQLQLLDLSNNSLHGSIP---- 594
              I       L  L  L + +  L+   P   ++   +   +L++++N    SIP    
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 595 --LCLDNTTLHESYNNSSSLD 613
             LC +  TL    N  +S+ 
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQ 172

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 36/216 (16%), Positives = 62/216 (28%), Gaps = 33/216 (15%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSS------------------LHIS 46
           PS  TL L   +   I +      N  N+  + +                      + I 
Sbjct: 31  PSTQTLKLIETHLRTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 47  LLQSIASI----FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQI 102
             +++  I       L  L  +G    GL     FP    +   D+   L   +  ++  
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKM---FPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 103 IGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTS 161
           I  +             L  N    +     +   L  + +  N     +       + S
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 162 -LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
              +LDVS   +T ++ S  L HL     L   N  
Sbjct: 206 GPSLLDVSQTSVT-ALPSKGLEHLKE---LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 42/259 (16%), Positives = 83/259 (32%), Gaps = 43/259 (16%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
                  V+   +   I S P     S + L L   H +   ++          +F    
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLP----PSTQTLKLIETHLR---TIPS-------HAF---- 51

Query: 220 NEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 279
                      +L      +SR+ +S       +     Y+   + ++++ + +      
Sbjct: 52  ----------SNLP----NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97

Query: 280 TWLLENNTKLRQLSLVNDSLGG-PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS- 337
              L+    L+ L + N  L   P    ++S     +L+I++N +   IPV     L + 
Sbjct: 98  PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN-LESLALSNN- 395
             +L +  N    S+     N   L  + L+ N     I +    G  +    L +S   
Sbjct: 158 TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 396 --SLEGHMFSRNFNLTNLR 412
             +L         +L  L 
Sbjct: 217 VTALPSKGLE---HLKELI 232

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 16/193 (8%)

Query: 30  FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDME 89
              ++++ L +S + +S L  I S    L+NLS+ G  ++  +         +L  L++ 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLS 150

Query: 90  GALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLV-----HLQVLNIA 144
           G     +   LQ +  S   L  L+L      +      ++ +   V      +  LN++
Sbjct: 151 G-CSGFSEFALQTLLSSCSRLDELNL------SWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 145 YNDLR---GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPI 201
                     L   +    +L  LD+S + +  +        L  ++ L LS  +  IP 
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263

Query: 202 SLEPFFNHSRLKS 214
           +L        LK+
Sbjct: 264 TLLELGEIPTLKT 276

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 48/263 (18%), Positives = 94/263 (35%), Gaps = 10/263 (3%)

Query: 206 FFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLE 265
           ++  +  +S +   +     +    +    +  +        + D  +   F   +  ++
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQ 96

Query: 266 YVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISN-NNFR 324
           ++DLS+  +       +L   +KL+ LSL    L  P    +  +  L  L++S  + F 
Sbjct: 97  HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156

Query: 325 GHIPVEIGDVLPSLFSLNIS--MNALDGSIPSSFG-NMKFLQILDLS--NNHLTGEIPEH 379
                 +      L  LN+S   +  +  +  +     + +  L+LS    +L       
Sbjct: 157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216

Query: 380 LVVGCVNLESLALSN-NSLEGHMFSRNFNLTNLRWLQLEGNHFVGEI-PQSLSKCFVLEG 437
           LV  C NL  L LS+   L+   F   F L  L+ L L   + +       L +   L+ 
Sbjct: 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276

Query: 438 LFLNNNSLSGKIPRWLGNLTRLQ 460
           L +      G +      L  LQ
Sbjct: 277 LQVFGIVPDGTLQLLKEALPHLQ 299

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 33/227 (14%)

Query: 12  LSSNNFTDIATATQELHNFTNLEYLTLDSSSL-HISLLQSIASIFPSLKNLSMIGCEVNG 70
                   +           N     L   S+  +   +        L  +     + + 
Sbjct: 4   QRPTPINQV----FPDPGLANAVKQNLGKQSVTDLVSQKE-------LSGVQNFNGDNSN 52

Query: 71  LVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDR 130
           +    G   F +L+ L +    I+ + S L    + +  L+ LS+       N +R+ + 
Sbjct: 53  IQSLAGMQFFTNLKELHLSHNQIS-DLSPL----KDLTKLEELSV-------NRNRLKNL 100

Query: 131 GLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 190
                  L  L +  N+LR +    L ++ +L IL + +N+L    S   L  L+ +E L
Sbjct: 101 NGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVL 155

Query: 191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEI-NAEITQSHSLTAPN 236
            L  N      +        ++        +  N  +     L   N
Sbjct: 156 DLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 47/256 (18%)

Query: 156 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSF 215
              + +    ++    +T          L+ ++     N++ Q   SL      + LK  
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 216 YADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMN 275
           +  +N+I+ +++    LT    +L  LS++                      +L+ I   
Sbjct: 69  HLSHNQIS-DLSPLKDLT----KLEELSVNRN-----------------RLKNLNGIP-- 104

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL 335
                     +  L +L L N+ L       +   K L +L I NN  +    + +   L
Sbjct: 105 ----------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS---IVMLGFL 149

Query: 336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395
             L  L++  N +  +       +K +  +DL+      E  ++     +          
Sbjct: 150 SKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

Query: 396 SLEGHMFSRNFNLTNL 411
            +  +  S   +  + 
Sbjct: 208 WISPYYISNGGSYVDG 223

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 13/163 (7%)

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
           ++  T L++L L ++ +      P+    +L  L ++ N  +    +        L  L 
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLF 112

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF 402
           +  N L      S  ++K L+IL + NN L   I    +     LE L L  N +     
Sbjct: 113 LDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SIVM--LGFLSKLEVLDLHGNEITN--T 165

Query: 403 SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 445
                L  + W+ L G   V E  +   + ++   +   +   
Sbjct: 166 GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 27/170 (15%)

Query: 438 LFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497
                  ++   P     L       + K  +   +  +  +L  +Q  +  ++NI  SL
Sbjct: 2   SIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SL 56

Query: 498 PSCFHPLSVEQVHLSKNML------------------HGQLKRGTFFNSYSLVTLDLSYN 539
                  +++++HLS N +                    +LK      S  L  L L  N
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNN 116

Query: 540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            L  +    +  L  L  L + +N L+  V   L  L++L++LDL  N +
Sbjct: 117 ELR-DTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 47/273 (17%), Positives = 83/273 (30%), Gaps = 55/273 (20%)

Query: 179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQ 238
            P   L +  +  L          L      S +++F  DN+ I                
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ--------------- 54

Query: 239 LSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH---IKMNGEFPTWLLENNTKLRQLSLV 295
               SL+            +    +L+ + LSH     ++       L++ TKL +LS+ 
Sbjct: 55  ----SLAG-----------MQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVN 93

Query: 296 NDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS 355
            + L     L       L  L + NN  R    +     L +L  L+I  N L  SI   
Sbjct: 94  RNRLK---NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNNKLK-SI-VM 145

Query: 356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415
            G +  L++LDL  N +T       +     +  + L+              L     ++
Sbjct: 146 LGFLSKLEVLDLHGNEITNTGG---LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK 448
                ++   P  +S         +        
Sbjct: 203 DPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 17/212 (8%)

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
            +  + ++  +  N ++       +     L  L +S+N      P++    L  L  L+
Sbjct: 37  QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSPLK---DLTKLEELS 91

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF 402
           ++ N L             L  L L NN L        ++   NLE L++ NN L+    
Sbjct: 92  VNRNRLKNLNGIPSAC---LSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLK--SI 143

Query: 403 SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462
                L+ L  L L GN  +      L++   +  + L       +  ++   L     +
Sbjct: 144 VMLGFLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 463 MMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
             P      P  +            +      
Sbjct: 202 KDPDGRWISPYYIS--NGGSYVDGCVLWELPV 231

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 18/195 (9%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI-ASIFPSLKNLS 62
                 L L SN  + + +     H  T L  L L+ + L     Q++ A IF  LKNL 
Sbjct: 36  PADTKKLDLQSNKLSSLPSKA--FHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLE 88

Query: 63  MIGCEVNGL--VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
            +    N L  +    F    +L  L ++   +    S    + +S+  L YLSL  + L
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL---KSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
            +    + D+    L  L+ L +  N L+         +T L+ L + +NQL   +    
Sbjct: 146 QSLPKGVFDK----LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200

Query: 181 LVHLTSIEELYLSNN 195
              L  ++ L L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---S 396
            L++  N L      +F  +  L++L L++N L   +P  +     NLE+L +++N   +
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 397 LEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQ----SLSKCFVLEGLFLNNNSLSGKIPRW 452
           L   +F     L NL  L+L+ N     +P     SL+K   L  L L  N L   +P+ 
Sbjct: 100 LPIGVFD---QLVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQ-SLPKG 151

Query: 453 L-GNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SVEQVH 510
           +   LT L+ + +  N L+      F +L  L+ L + +N +       F  L  ++ + 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 511 LSKN 514
           L +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 52/220 (23%), Positives = 81/220 (36%), Gaps = 47/220 (21%)

Query: 352 IPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNL 408
           IP+        + LDL +N L+  +P         L  L L++N   +L   +F     L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---L 84

Query: 409 TNLRWLQLEGNHFV---GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWL-GNLTRLQHIMM 464
            NL  L +  N        +   L     L  L L+ N L   +P  +  +LT+L ++ +
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140

Query: 465 PKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRG 523
             N L+  +P   F +L  L+ L + +N +   +P                        G
Sbjct: 141 GYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVP-----------------------EG 175

Query: 524 TFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN 563
            F     L TL L  N+L        D L +L  L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 9/122 (7%)

Query: 477 FCQLDWLQILDISDNNISGSLPS-CFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTL 534
           F +L  L++L ++DN +  +LP+  F  L  +E + ++ N L   L  G F    +L  L
Sbjct: 57  FHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL 114

Query: 535 DLSYNRLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGS 592
            L  N+L  ++   V D L++L++L LG+N L+  +P  +  KL  L+ L L NN L   
Sbjct: 115 RLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-R 171

Query: 593 IP 594
           +P
Sbjct: 172 VP 173

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 53/239 (22%), Positives = 86/239 (35%), Gaps = 63/239 (26%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEP--FFNHSRLKSFYA 217
              + LD+ SN+L+ S+ S     LT +  LYL++N  Q   +L    F     L++ + 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 277
            +N++                    +L  G     +F        +L  + L   ++   
Sbjct: 93  TDNKLQ-------------------ALPIG-----VFD----QLVNLAELRLDRNQLK-S 123

Query: 278 FPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS 337
            P  + ++ TKL  LSL                          N  +  +P  + D L S
Sbjct: 124 LPPRVFDSLTKLTYLSL------------------------GYNELQ-SLPKGVFDKLTS 158

Query: 338 LFSLNISMNALDGSIPSS-FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395
           L  L +  N L   +P   F  +  L+ L L NN L   +PE        L+ L L  N
Sbjct: 159 LKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 68/241 (28%)

Query: 136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNN 195
              + L++  N L          +T LR+L ++ N+L  ++ +     L ++E L++++N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 196 HFQIPISLEP--FFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI 253
             Q   +L    F     L     D N++                    SL        +
Sbjct: 96  KLQ---ALPIGVFDQLVNLAELRLDRNQLK-------------------SLPPR-----V 128

Query: 254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL----GGPFQLPIHS 309
           F                                TKL  LSL  + L     G F      
Sbjct: 129 FDSL-----------------------------TKLTYLSLGYNELQSLPKGVF----DK 155

Query: 310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSN 369
              L  L + NN  +  +P    D L  L +L +  N L      +F +++ L++L L  
Sbjct: 156 LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 370 N 370
           N
Sbjct: 215 N 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 341 LNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SL 397
           + +  N +    P +F   K L+ +DLSNN ++ E+      G  +L SL L  N    L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIP----QSLSKCFVLEGLFLNNNSLSGKIPRWL 453
              +F     L +L+ L L  N  +  +     Q L     L  L L +N L        
Sbjct: 96  PKSLFEG---LFSLQLLLLNANK-INCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGTF 148

Query: 454 GNLTRLQHIMMPKN 467
             L  +Q + + +N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 438 LFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGS 496
           + L  N++    P       +L+ I +  N +   +  + F  L  L  L +  N I+  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 497 LPS-CFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554
           LP   F  L S++ + L+ N ++  L+   F + ++L  L L  N+L          L  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 555 LSHLILGHN 563
           +  + L  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 484 QILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
             + +  N I    P  F P   + ++ LS N +  +L    F    SL +L L  N++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPVQL-CKLNQLQLLDLSNNSLHGSIP 594
                  +GL  L  L+L  N +   + V     L+ L LL L +N L  +I 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRI 164
               L+ + L  + +   +          L  L  L +  N +   LP      + SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 165 LDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
           L +++N++   +       L ++  L L +N  Q  I+   F     +++ +   N
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 503 PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH 562
           P ++ ++ L +N +   +  G F     L  +DLS N+++    D   GL  L+ L+L  
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 563 NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
           N +          L  LQLL L+ N ++  + 
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKIN-CLR 120

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGN 419
             + L  N +   IP         L  + LSNN    L    F     L +L  L L GN
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 420 ---HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWL-GNLTRLQHIMMPKNHLEGPIPV 475
                   + + L     L+ L LN N ++  +      +L  L  + +  N L+     
Sbjct: 91  KITELPKSLFEGLFS---LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 476 EFCQLDWLQILDISDN 491
            F  L  +Q + ++ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 77  FPHFKSLEHLDMEGALIALNTSFLQIIGE----SMPSLKYLSLFGSILGTNSSRILDRGL 132
           F  +K L  +D       L+ + +  +       + SL  L L+G+ +      + +   
Sbjct: 52  FSPYKKLRRID-------LSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG-- 102

Query: 133 CSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYL 192
             L  LQ+L +  N +         ++ +L +L +  N+L  +I+      L +I+ ++L
Sbjct: 103 --LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHL 159

Query: 193 SNNHF 197
           + N F
Sbjct: 160 AQNPF 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           L ++NN F       I   LP L  +N S N +      +F     +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 376 IPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP----QS 428
           +   +  G  +L++L L +N    +    F     L+++R L L  N     +      +
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 429 LSKCFVLEGLFLNNN 443
           L     L  L L  N
Sbjct: 152 LHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 484 QILDISDNNISGSLPS-CFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL 541
             L +++N  +    +  F  L  + +++ S N +   ++ G F  +  +  + L+ NRL
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 542 NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
                    GL  L  L+L  N +          L+ ++LL L +N +  ++ 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 308 HSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS-FGNMKFLQILD 366
               +L  ++ SNN     I     +    +  + ++ N L+ ++    F  ++ L+ L 
Sbjct: 54  KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 367 LSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGNHF 421
           L +N +T  +     +G  ++  L+L +N   ++    F     L +L  L L  N F
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD---TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 503 PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV-DGLSQLSHLILG 561
           P    ++ L+ N        G F     L  ++ S N++  +I +   +G S ++ ++L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 562 HNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIP 594
            N LE  V  ++   L  L+ L L +N +   + 
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVG 121

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 438 LFLNNNSLSGKIPR-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 496
           L LNNN  +          L +L+ I    N +       F     +  + ++ N +  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 497 LPS-CFHPL-SVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ 554
           +    F  L S++ + L  N +   +   +F    S+  L L  N++        D L  
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 555 LSHLILGHN 563
           LS L L  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 108 PSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRILD 166
           P L+ ++   + +        +        +  + +  N L  ++       + SL+ L 
Sbjct: 57  PQLRKINFSNNKITDIEEGAFE----GASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 167 VSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNN 220
           + SN++T  + +   + L+S+  L L +N     ++   F     L +     N
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGN 419
             L L+NN  T      +      L  +  SNN    +E   F      + +  + L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479
                  +       L+ L L +N ++         L+ ++ + +  N +    P  F  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 480 LDWLQILDISDN 491
           L  L  L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
            L  L+ +N + N +           + +  + ++SN+L  ++       L S++ L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 194 NNHFQIPISLEP--FFNHSRLKSFYADNNEI 222
           +N       +    F   S ++     +N+I
Sbjct: 114 SNRIT---CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 19/157 (12%)

Query: 48  LQSI-ASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGE- 105
           L  I   I      L +   E   L     F     L  ++        + + +  I E 
Sbjct: 23  LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN-------FSNNKITDIEEG 75

Query: 106 ---SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTS 161
                  +  + L  + L     ++       L  L+ L +  N +   +       ++S
Sbjct: 76  AFEGASGVNEILLTSNRLENVQHKMFKG----LESLKTLMLRSNRIT-CVGNDSFIGLSS 130

Query: 162 LRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
           +R+L +  NQ+T +++      L S+  L L  N F 
Sbjct: 131 VRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 34/325 (10%), Positives = 96/325 (29%), Gaps = 42/325 (12%)

Query: 115 LFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLA-----NMTSLRILDVSS 169
           +   +     S  ++        +  L+++ N+L       L         S+  L++S 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 170 NQLT----GSISSSPLVHLTSIEELYLSNNHFQ----IPISLEPFFNHSRLKSFYADNNE 221
           N L       +         ++  L LS N         +          +       N+
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 222 INAEITQ--SHSLTAPNFQLSRLSLS----SGYGDGFIFPKFLYHQHDLEYVDLSHIKMN 275
            +++ +     + +     ++ L+L            +         ++  ++L    + 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 276 GEFPTWLLE----NNTKLRQLSLVNDSLGGPFQLPI-----HSHKRLGMLDISNNNFRGH 326
            +    L +        +  L L  + LG      +          +  L++  N   G 
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 327 IPVEIGDVL---PSLFSLNISMNALDG-------SIPSSFGNMKFLQILDLSNNHLTGE- 375
               +  +      L ++ +  + +         ++ ++F N++ + ++D +   +    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 376 ---IPEHLVVGCVNLESLALSNNSL 397
              I   +       +  +L N  L
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 59/297 (19%), Positives = 98/297 (32%), Gaps = 63/297 (21%)

Query: 336 PSLFSLNISMNALDGSIPSSFG-----NMKFLQILDLSNNHLTGE----IPEHLVVGCVN 386
             + SL++S+N L                  +  L+LS N L  +    + + L     N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 387 LESLALSNNSLE---GHMFSRNFNLTN--LRWLQLEGNHF----VGEIPQSLSKCFV-LE 436
           + SL LS N L         +        +  L L  N F      E  Q+ S     + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI--- 493
            L L  N L  K    L  +                          +  L++  NN+   
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPAN-------------------VNSLNLRGNNLASK 182

Query: 494 -----SGSLPSCFHPLSVEQVHLSKNMLHGQ----LKRGTFFNSYSLVTLDLSYNRLNG- 543
                +  L S   P SV  + LS N+L  +    L          +V+L+L  N L+G 
Sbjct: 183 NCAELAKFLASI--PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 544 ---NISDWVDGLSQLSHLILGHNNLEGEVPVQ-------LCKLNQLQLLDLSNNSLH 590
              N+    D L  L  + L ++ ++     Q          + ++ L+D +   +H
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 58/285 (20%)

Query: 6   SLNTLYLSSNNFTD-----IATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPS--- 57
           S+ +L LS N+        +           N+  L L  + L       +     +   
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILA--AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109

Query: 58  -LKNLSMIGCE-----VNGLVRGQGFPHFKSLEHLDMEG-------------ALIALNTS 98
            +  L +   +      +   +        S+  L++ G              L A+   
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQILAAIPA- 167

Query: 99  FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSL-VHLQVLNIAYNDLRGSLPWCLA 157
                     ++  L+L G+ L + +   L + L S+   +  L+++ N L       LA
Sbjct: 168 ----------NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217

Query: 158 -----NMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEELYLSNNHF------QIPISL 203
                    +  L++  N L G            L  ++ +YL  +        Q     
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277

Query: 204 EPFFNHSRLKSFYADNNEINAEITQ--SHSLTAPNFQLSRLSLSS 246
             F N  ++     +  EI+   +   S+ +   + +    SL +
Sbjct: 278 AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 46/329 (13%), Positives = 99/329 (30%), Gaps = 59/329 (17%)

Query: 5   PSLNTLYLSSNNFTD-----IATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLK 59
             + +L LS NN        +  A    +   ++  L L  +SL       +  I  ++ 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 60  NLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPS----LKYLSL 115
                                 ++  L++ G    L+      + +++ +    +  L L
Sbjct: 80  ---------------------ANVTSLNLSGN--FLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 116 FGSILGTNSSRILDRGLCSL-VHLQVLNIAYNDLRGSLPWCLANM-----TSLRILDVSS 169
             +   + SS    +   +L   +  LN+  NDL       L  +      ++  L++  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 170 NQLT----GSISSSPLVHLTSIEELYLSNNHFQ----IPISLEPFFNHSRLKSFYADNNE 221
           N L       ++        S+  L LS N         ++       + + S     N 
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236

Query: 222 INAEITQS-HSLTAPNFQLSRLSLSS------GYGDGFIFPKFLYHQHDLEYVDLSHIKM 274
           ++    ++   L      L  + L                     +   +  VD +  ++
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Query: 275 NGE----FPTWLLENNTKLRQLSLVNDSL 299
           +          + E + K    SL+N  L
Sbjct: 297 HPSHSIPISNLIRELSGKADVPSLLNQCL 325

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT---GEIPEHLVVGCVNLESLALSNN- 395
            L +  N +    P  F ++  L+ L L +N L      + + L      L  L L  N 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQ 99

Query: 396 --SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWL 453
              L   +F R   L +L+ L +  N    E+P+ + +   L  L L+ N L        
Sbjct: 100 LTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 454 GNLTRLQHI 462
             L+ L H 
Sbjct: 156 DRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 484 QILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
           QIL + DN I+   P  F  L  +++++L  N L   L  G F +   L  LDL  N+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP 594
              S   D L  L  L +  N L  E+P  + +L  L  L L  N L  SIP
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 59/394 (14%), Positives = 113/394 (28%), Gaps = 108/394 (27%)

Query: 9   TLYLSSN-NFTDIATATQELH--------NFTNLEYLTLDSSSLHIS---LLQSIASIFP 56
            L  +     TD  +A    H          T  E  +L    L      L + + +  P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 57  SLKNLSMIGCEV-NGLVRGQGFPH--FKSLEHLDMEGALIALNTSFLQIIGESMPSLKYL 113
               LS+I   + +GL     + H     L  + +E +L  L  +  +           L
Sbjct: 328 RR--LSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYR------KMFDRL 378

Query: 114 SLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLAN-MTSLRILDVSSNQL 172
           S+F       S+ I            +L++ + D+  S    + N +    +++    + 
Sbjct: 379 SVF-----PPSAHI---------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 173 TGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSL 232
           T SI          +E      N + +         H  +   Y            S  L
Sbjct: 425 TISI------PSIYLELKVKLENEYAL---------HRSIVDHYNIPKTF-----DSDDL 464

Query: 233 TAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN---TKL 289
             P            Y D + +    +H  ++E     H +    F    L+      K+
Sbjct: 465 IPP------------YLDQYFYSHIGHHLKNIE-----HPERMTLFRMVFLDFRFLEQKI 507

Query: 290 RQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVE-------IGDVLPSLFSLN 342
           R  S   ++ G              +  +    ++ +I          +  +L   F   
Sbjct: 508 RHDSTAWNASGSILNT---------LQQL--KFYKPYICDNDPKYERLVNAILD--FLPK 554

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 376
           I  N +           K+  +L ++       I
Sbjct: 555 IEENLICS---------KYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 5e-06
 Identities = 72/475 (15%), Positives = 136/475 (28%), Gaps = 139/475 (29%)

Query: 5   PSLNT-LYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS- 62
           PS+ T +Y+   +          L+N  N  +     +  ++S LQ    +  +L  L  
Sbjct: 105 PSMMTRMYIEQRD---------RLYN-DNQVF-----AKYNVSRLQPYLKLRQALLELRP 149

Query: 63  --------MIGC-------EV---NGLVRGQGFPHF--------KSLEHLDMEGALIALN 96
                   ++G        +V     +     F  F             L+M   L+   
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 97  TSFLQIIGESMPSLKYLS---------LFGSILGTNSSRILDRGLCSLVHLQVLNIAYND 147
                   +   ++K            L  S    N   +L   + +       N++   
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLS--- 265

Query: 148 LRGSLPWCLANMTSLR---ILDVSSNQLTGSISSSPLVH-LTSIEEL-----YLSNNHFQ 198
                  C   +T+ R   + D  S   T  IS       LT  E       YL      
Sbjct: 266 -------CKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 199 IP---ISLEPFF----------NHSRLKSF-YADNNEINAEITQS-HSLTAPNFQLSRLS 243
           +P   ++  P              +   ++ + + +++   I  S + L    ++  ++ 
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KM- 374

Query: 244 LSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE---NNTKLRQLSLVNDSLG 300
               +    +FP              +HI      PT LL     +     + +V + L 
Sbjct: 375 ----FDRLSVFPP-----------S-AHI------PTILLSLIWFDVIKSDVMVVVNKL- 411

Query: 301 GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMK 360
                    HK   +++         IP     +   L     +  AL  SI   +   K
Sbjct: 412 ---------HKY-SLVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ 415
                DL   +L      H+         L    +     +F   F   + R+L+
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVF--LDFRFLE 504

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 48/347 (13%), Positives = 99/347 (28%), Gaps = 113/347 (32%)

Query: 360 KFLQILDLSNNHLTGEIPEHLVV-----GC---VNLESLALSNNSLEGHMFSRNFNLTNL 411
            +L++       L    P   V+     G      +      +  ++  M  + F     
Sbjct: 136 PYLKL----RQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIF----- 185

Query: 412 RWLQLEGN----HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNL-TRLQHIMMPK 466
            WL L  N      V E+ Q L   + ++  + + +  S  I   + ++   L+ ++  K
Sbjct: 186 -WLNL-KNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 467 NH-------------------------------------LEGPIPVEFCQLDWLQILDIS 489
            +                                     L                L   
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 490 D---------NNISGSLPS--C-FHPLSV--------EQVHLSKNMLHGQLKRGTFFNSY 529
           +         +     LP      +P  +        + +    N  H    + T     
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 530 SLVTLDLS-----YNRL-----NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 579
           SL  L+ +     ++RL     + +I   +     LS  ++  + ++ +V V + KL++ 
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----LS--LIWFDVIKSDVMVVVNKLHKY 414

Query: 580 QLLDLSNNSLHGSIPL--------CLDNTTLH----ESYNNSSSLDK 614
            L++        SIP           +   LH    + YN   + D 
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 69  NGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRIL 128
             + +   + +      LD+ G  I      ++ +G ++     +         N  R L
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD-----NEIRKL 57

Query: 129 DRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 188
           D G   L  L+ L +  N +          +  L  L +++N L       PL  L S+ 
Sbjct: 58  D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 189 ELYLSNN 195
            L +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
           +L     ++ + N++R  L      +  L+ L V++N++   I       L  + EL L+
Sbjct: 40  TLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILT 96

Query: 194 NNHFQIPISLEPFFNHSRLKSFYADNNEI 222
           NN       L+P  +   L       N +
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLR 412
           + + N    + LDL    +   I E+L       +++  S+N +        F  L  L+
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 413 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
            L +  N               L  L L NNSL 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 12  LSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGL 71
           L++      A    +  N      L L      I +++++ +       +       N +
Sbjct: 4   LTAELIEQAA----QYTNAVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSD---NEI 54

Query: 72  VRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRG 131
            +  GFP  + L+ L +    I       + + +++P L  L L  + L       LD  
Sbjct: 55  RKLDGFPLLRRLKTLLVNNNRI---CRIGEGLDQALPDLTELILTNNSL--VELGDLDP- 108

Query: 132 LCSLVHLQVLNIAYN---DLRGSLPWCLANMTSLRILD 166
           L SL  L  L I  N   + +    + +  +  +R+LD
Sbjct: 109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK 466
           N    R L L G   +  I    +     + +  ++N +  K+      L RL+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 467 NHLEGPIPVEFCQLDWLQILDISDNNIS 494
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
             N  + R+L L    +     L   +  +   +D S+N  R    ++   +L  L +L 
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLT--GEIPEHLVVGCVNLESLALSNNSLEGH 400
           ++ N +          +  L  L L+NN L   G++ + L     +L  L +  N +   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPL-ASLKSLTYLCILRNPVTNK 128

Query: 401 MFSRNFNLTNLRWLQ 415
              R + +  +  ++
Sbjct: 129 KHYRLYVIYKVPQVR 143

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 28/136 (20%)

Query: 453 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512
             N  R + + +    +   I      LD    +D SDN I            ++   L 
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR----------KLDGFPLL 63

Query: 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ 572
           +                 L TL ++ NR+          L  L+ LIL +N+L     + 
Sbjct: 64  RR----------------LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 107

Query: 573 -LCKLNQLQLLDLSNN 587
            L  L  L  L +  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 485 ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN 544
           ++ ++   I        + +   ++ L    +      G   +      +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQ--FDAIDFSDNEIR-K 56

Query: 545 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
           +  +   L +L  L++ +N +          L  L  L L+NNSL
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 8e-08
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 351 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFN 407
                    + L  L + N      +    + G   L +L +  +    +    F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 408 LTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 445
              L  L L  N     +     +   L+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRW-LGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 482
           +    L     L  L++ N      +    L  L  L+++ + K+ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 483 LQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLH 517
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 130 RGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 188
             L    +L  L I        L    L  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 189 ELYLSNNHFQIPISLEP-FFNHSRLKSFYADNNEIN 223
            L LS N  +   SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
           + L  L I N     H+ +     L  L +L I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSL 397
            L   +    V G ++L+ L LS N L
Sbjct: 91  ALE-SLSWKTVQG-LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRG-LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRI 164
              +L  L +          + L+   L  L  L+ L I  + LR   P        L  
Sbjct: 29  GAENLTELYI----ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 165 LDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
           L++S N L  S+S   +  L S++EL LS N   
Sbjct: 85  LNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 530 SLVTLDLSYNRLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS 588
           +L  L +   +   ++      GL +L +L +  + L    P       +L  L+LS N+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 589 LHGSIPLCLDNTTLHESYNNSSSLD 613
           L       +   +L E   + + L 
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 478 CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLS 537
           C       L  + +    SL       ++ ++++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 538 YNRLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
            + L   ++        +LS L L  N LE  +  +  +   LQ L LS N LH
Sbjct: 65  KSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 151 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHS 210
                L    +L  L + + Q    +    L  L  +  L +  +  +  ++ + F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTP 80

Query: 211 RLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSS 246
           RL       N     +      T     L  L LS 
Sbjct: 81  RLSRLNLSFN----ALESLSWKTVQGLSLQELVLSG 112

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 26/130 (20%), Positives = 60/130 (46%), Gaps = 12/130 (9%)

Query: 105 ESMPSLKYLSLFGSILGTNS-SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLR 163
            ++ + K+L+L      TN+  +I    L  + +L++L++  N ++  +    A   +L 
Sbjct: 45  STLKACKHLAL-----STNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 164 ILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN 223
            L +S NQ+    S S +  L ++  LY+SNN       ++      +L+      N + 
Sbjct: 97  ELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 224 AEITQSHSLT 233
            +  ++++ +
Sbjct: 154 NDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 20/139 (14%)

Query: 79  HFKSLEHLDMEGALIALNTSFLQIIG-ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVH 137
             K+ +HL +    I       +I     M +L+ LSL     G N  + ++        
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSL-----GRNLIKKIENLDAVADT 94

Query: 138 LQVLNIAYN---DLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSN 194
           L+ L I+YN    L G     +  + +LR+L +S+N++T       L  L  +E+L L+ 
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 195 NHFQIPISLEPFFNHSRLK 213
           N            +  R++
Sbjct: 150 NPLYNDYKENNATSEYRIE 168

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
           +  +   L LS+NN   I++    L    NL  L+L  +   I  ++++ ++  +L+ L 
Sbjct: 46  TLKACKHLALSTNNIEKISS----LSGMENLRILSLGRN--LIKKIENLDAVADTLEELW 99

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFG 117
           +     N +    G     +L  L M    I       ++   ++  L+ L L G
Sbjct: 100 I---SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL--AALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 49/195 (25%)

Query: 405 NFNLTNLRWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIM 463
           +   T    ++L G    + ++  +LS     + L L+ N++  KI   L  +  L+ + 
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILS 76

Query: 464 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRG 523
           + +N ++  I       D L+ L IS N I+          S+    + K          
Sbjct: 77  LGRNLIKK-IENLDAVADTLEELWISYNQIA----------SLS--GIEKL--------- 114

Query: 524 TFFNSYSLVTLDLSYNRLNGNISDWVD-----GLSQLSHLILGHNNLEGEVPVQ------ 572
                 +L  L +S N+    I++W +      L +L  L+L  N L  +          
Sbjct: 115 -----VNLRVLYMSNNK----ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

Query: 573 ----LCKLNQLQLLD 583
               + +L  L+ LD
Sbjct: 166 RIEVVKRLPNLKKLD 180

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 40/190 (21%)

Query: 10  LYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI-ASIFPSLKNLSMIGCEV 68
           L L S     ++ AT      T L +L LD + L     Q++ A +F  L  L  +G   
Sbjct: 40  LDLQSTGLATLSDAT--FRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLAN 92

Query: 69  NGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRIL 128
           N L          SL                   + + +  L  L L G+ L +  S + 
Sbjct: 93  NQL---------ASLPLG----------------VFDHLTQLDKLYLGGNQLKSLPSGVF 127

Query: 129 DRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 187
           DR    L  L+ L +  N L+ S+P      +T+L+ L +S+NQL  S+       L  +
Sbjct: 128 DR----LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181

Query: 188 EELYLSNNHF 197
           + + L  N F
Sbjct: 182 QTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---S 396
            L++    L     ++F  +  L  L+L  N L   +   +      L +L L+NN   S
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLAS 97

Query: 397 LEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQ----SLSKCFVLEGLFLNNNSLSGKIPRW 452
           L   +F     LT L  L L GN     +P      L+K   L+ L LN N L   IP  
Sbjct: 98  LPLGVFDH---LTQLDKLYLGGNQLK-SLPSGVFDRLTK---LKELRLNTNQLQ-SIPA- 148

Query: 453 LG---NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN 491
            G    LT LQ + +  N L+      F +L  LQ + +  N
Sbjct: 149 -GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHPL-SVEQVHLSKNMLHGQLKRGT 524
             L       F  L  L  L++  N +  +L +  F  L  +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 525 FFNSYSLVTLDLSYNRLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLL 582
           F +   L  L L  N+L   +   V D L++L  L L  N L+  +P     KL  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 583 DLSNNSLHGSIP 594
            LS N L  S+P
Sbjct: 161 SLSTNQLQ-SVP 171

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 484 QILDISDNNISGSLPSCFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
           + LD+    ++    + F  L+ +  ++L  N L   L  G F +   L TL L+ N+L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIP 594
                  D L+QL  L LG N L+  +P  +  +L +L+ L L+ N L  SIP
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIP 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRI 164
            +  L +L+L  + L T S+ + D     L  L  L +A N L  SLP     ++T L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDD----LTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111

Query: 165 LDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEP--FFNHSRLKSFYADNNEI 222
           L +  NQL  S+ S     LT ++EL L+ N  Q   S+    F   + L++     N++
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ---SIPAGAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 47/185 (25%), Positives = 66/185 (35%), Gaps = 35/185 (18%)

Query: 385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 444
            + E L L +  L     +    LT L WL L+ N                        +
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---------------------T 73

Query: 445 LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHP 503
           LS  +   L  L  L    +  N L       F  L  L  L +  N +  SLPS  F  
Sbjct: 74  LSAGVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR 129

Query: 504 L-SVEQVHLSKNMLHGQLKR---GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLI 559
           L  ++++ L+ N    QL+    G F    +L TL LS N+L        D L +L  + 
Sbjct: 130 LTKLKELRLNTN----QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 560 LGHNN 564
           L   N
Sbjct: 186 L-FGN 189

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 100 LQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANM 159
           L++   +   +K L L  S   +N  ++          L+ L+     L  S+   L  +
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
             L+ L++S N+++            ++  L LS N  +   ++EP      LKS    N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 220 NEI 222
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)

Query: 29  NFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDM 88
             ++++ L LD+S  +   L+ +   F  L+ LS I     GL      P    L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 89  EGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYN-- 146
               +   +  L+++ E  P+L +L+L G+ +       ++  L  L +L+ L++     
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSGNKI--KDLSTIEP-LKKLENLKSLDLFNCEV 125

Query: 147 -DLRGSLPWCLANMTSLRILD 166
            +L          +  L  LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEG 418
           ++ L L N+       E L      LE L+  N    S+          L  L+ L+L  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LP---KLNKLKKLELSD 73

Query: 419 NHFVGEIPQSLSKCFVLEGLFLNNNSLSG-KIPRWLGNLTRLQHI 462
           N   G +     KC  L  L L+ N +        L  L  L+ +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 284 ENNTKLRQLSLVNDSLGGPFQLPIHSH-KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN 342
              + +++L L N          +    + L  L   N        +     L  L  L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLE 70

Query: 343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTG-EIPEHLVVGCVNLESLALSNN 395
           +S N + G +         L  L+LS N +      E L     NL+SL L N 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHIS-LLQSIASIFPSLKNL 61
            F  L  L   +   T IA     L     L+ L L  S   +S  L+ +A   P+L +L
Sbjct: 40  EFEELEFLSTINVGLTSIA----NLPKLNKLKKLEL--SDNRVSGGLEVLAEKCPNLTHL 93

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYL 113
           ++ G ++  L   +     ++L+ LD+    +     + + + + +P L YL
Sbjct: 94  NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 503 PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV-DGLSQLSHLILG 561
           P  V +++L  N     L      N   L  +DLS NR++  +S+     ++QL  LIL 
Sbjct: 30  PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86

Query: 562 HNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIP 594
           +N L   +P +    L  L+LL L  N +   +P
Sbjct: 87  YNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---S 396
            L +  N     +P    N K L ++DLSNN ++  +          L +L LS N    
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 397 LEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQ----SLSKCFVLEGLFLNNN 443
           +    F     L +LR L L GN  +  +P+     LS    L  L +  N
Sbjct: 93  IPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSA---LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISS 178
           L  N   ++ + L +  HL +++++ N +  +L     +NMT L  L +S N+L   I  
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPP 95

Query: 179 SPLVHLTSIEELYLSNNHFQ-IP 200
                L S+  L L  N    +P
Sbjct: 96  RTFDGLKSLRLLSLHGNDISVVP 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 40/137 (29%), Positives = 54/137 (39%), Gaps = 19/137 (13%)

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---S 396
            L++  N+L       F  +  L  L L  N L   +P  +     +L  L LS N   S
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 397 LEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS-----KCFVLEGLFLNNNSLSGKIPR 451
           L   +F +   LT L+ L L  N       QSL      K   L+ L L  N L   +P 
Sbjct: 91  LPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPD 141

Query: 452 -WLGNLTRLQHIMMPKN 467
                LT LQ+I +  N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 7/114 (6%)

Query: 484 QILDISDNNISGSLPSCFHPLSVEQ-VHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
             LD+  N++       F  L+    ++L  N L   L  G F    SL  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 543 GNISDWV-DGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIP 594
            ++ + V D L+QL  L L  N L+  +P  +  KL QL+ L L  N L  S+P
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVP 140

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 20/115 (17%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMFSRNFNLTNLRWLQLEGN 419
             L L++N L     + L     +L  L L  N    +E + F      ++++ LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 420 HFVGEIPQ----SLSKCFVLEGLFLNNNSLSGKIPRWLG---NLTRLQHIMMPKN 467
               EI       L +   L+ L L +N +S  +    G   +L  L  + +  N
Sbjct: 89  KI-KEISNKMFLGLHQ---LKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 503 PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV-DGLSQLSHLILG 561
           PL   ++ L+ N L      G F     LV L+L  N+L   I     +G S +  L LG
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 562 HNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIP 594
            N ++ E+  ++   L+QL+ L+L +N +   + 
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSS-FGNMKFLQILDLSNNHLTG 374
           L +++N         +   LP L  L +  N L   I  + F     +Q L L  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 375 EIPEHLVVGCVNLESLALSNNSL----EGHMFSRNFNLTNLRWLQLEGNHF 421
           EI   + +G   L++L L +N +     G  F    +L +L  L L  N F
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPG-SFE---HLNSLTSLNLASNPF 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 82  SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVL 141
               +DM+  +       L++   +  +++ L L      +N  +I        V+L+ L
Sbjct: 4   GSSGMDMKRRIH------LELRNRTPAAVRELVL--DNCKSNDGKIEG-LTAEFVNLEFL 54

Query: 142 NIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPI 201
           ++    L  S+   L  +  L+ L++S N++           L ++  L LS N  +   
Sbjct: 55  SLINVGLI-SVS-NLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDIS 111

Query: 202 SLEPFFNHSRLKSFYADNNEI 222
           +LEP      LKS    N E+
Sbjct: 112 TLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 29  NFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDM 88
               +  L LD+   +   ++ + + F +L+ LS+I     GL+     P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN---VGLISVSNLPKLPKLKKLEL 78

Query: 89  EGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYN-- 146
               I      L ++ E +P+L +L+L G+ L       L+  L  L  L+ L++     
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEP-LKKLECLKSLDLFNCEV 132

Query: 147 -DLRGSLPWCLANMTSLRILD 166
            +L          +  L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 404 RNFNLTNLRWLQLEGNHF-VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI 462
           RN     +R L L+      G+I    ++   LE L L N  L   +   L  L +L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 463 MMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 494
            + +N + G + +   +L  L  L++S N + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 6/133 (4%)

Query: 285 NNTKLRQLSLVNDSLGGPFQLPIHSH-KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNI 343
               +R+L L N          + +    L  L + N        V     LP L  L +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 344 SMNALDGSIPSSFGNMKFLQILDLSNNHLTG-EIPEHLVVGCVNLESLALSNNSLEGHMF 402
           S N + G +      +  L  L+LS N L      E L      L+SL L N  +     
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLND 137

Query: 403 SRNFNLTNLRWLQ 415
            R      L  L 
Sbjct: 138 YRESVFKLLPQLT 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
             F +L  L L +     ++     L     L+ L L  + +    L  +A   P+L +L
Sbjct: 46  AEFVNLEFLSLINVGLISVSN----LPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHL 100

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYL 113
           ++ G ++  +   +     + L+ LD+    +     + + + + +P L YL
Sbjct: 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 485 ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN 544
           +LD   +N           +++E + L    L              L  L+LS NR+ G 
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIFGG 86

Query: 545 ISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNN 587
           +    + L  L+HL L  N L+    ++ L KL  L+ LDL N 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 30/188 (15%)

Query: 287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN 346
             + Q+   N  +       I     +  L +  N     I       L +L  L ++ N
Sbjct: 41  NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISA--LKELTNLTYLILTGN 95

Query: 347 ALDGSIPSS-FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN---SLEGHMF 402
            L  S+P+  F  +  L+ L L  N L   +P+ +     NL  L L++N   SL   +F
Sbjct: 96  QL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153

Query: 403 SRNFNLTNLRWLQLEGNHFVGEIPQSLS-----KCFVLEGLFLNNNSLSGKIPRWLG--- 454
            +   LTNL  L L  N       QSL      K   L+ L L  N L   +P   G   
Sbjct: 154 DK---LTNLTELDLSYNQL-----QSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFD 202

Query: 455 NLTRLQHI 462
            LT LQ+I
Sbjct: 203 RLTSLQYI 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 22/172 (12%)

Query: 30  FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDME 89
           F       L   S+      + A     L ++  I    + +   QG  +  ++ +L   
Sbjct: 18  FAETIKANLKKKSV------TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-- 69

Query: 90  GALIALNTSFLQIIG--ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYND 147
                L  + L  I   + + +L YL L G+ L +  + + D+    L +L+ L +  N 
Sbjct: 70  -----LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELVLVENQ 120

Query: 148 LRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ 198
           L+ SLP      +T+L  L+++ NQL  S+       LT++ EL LS N  Q
Sbjct: 121 LQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 17/166 (10%)

Query: 435 LEGLFLNNNSLSGK--IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 492
           ++ +  NN+ +     I      L  ++++ +  N L   I     +L  L  L ++ N 
Sbjct: 43  IDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQ 96

Query: 493 ISGSLPS-CFHPLS-VEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV- 549
           +  SLP+  F  L+ ++++ L +N L   L  G F    +L  L+L++N+L  ++   V 
Sbjct: 97  LQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVF 153

Query: 550 DGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSIP 594
           D L+ L+ L L +N L+  +P  +  KL QL+ L L  N L  S+P
Sbjct: 154 DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 23/198 (11%)

Query: 6   SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIG 65
                 L   + TD  T     +   +++ +  ++S +     +S+      L N+  + 
Sbjct: 20  ETIKANLKKKSVTDAVTQ----NELNSIDQIIANNSDI-----KSVQG-IQYLPNVRYLA 69

Query: 66  CEVNGLVRGQGFPHFKSLEHLDMEG-ALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
              N L          +L +L + G  L +L       + + + +LK L L  + L +  
Sbjct: 70  LGGNKLHDISALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLP 125

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVH 183
             + D+    L +L  LN+A+N L+ SLP      +T+L  LD+S NQL  S+       
Sbjct: 126 DGVFDK----LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179

Query: 184 LTSIEELYLSNNHFQ-IP 200
           LT +++L L  N  + +P
Sbjct: 180 LTQLKDLRLYQNQLKSVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 42/195 (21%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSI-ASIFPSLKNL 61
             P++  L L  N   DI+     L   TNL YL L  + L     QS+   +F  L NL
Sbjct: 61  YLPNVRYLALGGNKLHDISA----LKELTNLTYLILTGNQL-----QSLPNGVFDKLTNL 111

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
             +    N L         +SL     +G            + + + +L YL+L  + L 
Sbjct: 112 KELVLVENQL---------QSLP----DG------------VFDKLTNLTYLNLAHNQLQ 146

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSP 180
           +    + D+    L +L  L+++YN L+ SLP      +T L+ L +  NQL  S+    
Sbjct: 147 SLPKGVFDK----LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGV 200

Query: 181 LVHLTSIEELYLSNN 195
              LTS++ ++L +N
Sbjct: 201 FDRLTSLQYIWLHDN 215

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 29/207 (14%)

Query: 265 EYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP------FQLPIHSHKRLGMLDI 318
           E +D        +   +  E  + LRQL+L    +           L       L  +++
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVL-GSGRHALDEVNL 108

Query: 319 SNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG-----NMKFLQILDLSNNHLT 373
           ++          +  V      L + +N+L              +   +  L LSNN LT
Sbjct: 109 ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

Query: 374 GEIPEHLVVG---CVNLESLALSNNSLE-------GHMFSRNFNLTNLRWLQLEGNHF-- 421
                 L+ G     ++  L+L +  L             RN     L+ L +  N    
Sbjct: 169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN---RQLQELNVAYNGAGD 225

Query: 422 --VGEIPQSLSKCFVLEGLFLNNNSLS 446
                + ++  +   LE L L  N LS
Sbjct: 226 TAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 35/240 (14%), Positives = 71/240 (29%), Gaps = 47/240 (19%)

Query: 6   SLNTLYLSSNNFTD-----IATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKN 60
           SL  L L+    T      +A           L+ + L S  L  + L+++  +F   + 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLG--SGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 61  LSMIGCEVNGLVRGQGFPHFKSLEHLDMEGA-LIALNTSFLQIIGESMPSLKYLSLFGSI 119
           L +                      L  E    +        ++      +  L L  + 
Sbjct: 131 LGLQLN------------------SLGPEACKDLR------DLLLHDQCQITTLRLSNNP 166

Query: 120 LGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANM----TSLRILDVSSNQLTGS 175
           L      +L  GL     +  L++ +  L       LA        L+ L+V+ N    +
Sbjct: 167 LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226

Query: 176 ----ISSSPLVHLTSIEELYLSNNHFQ------IPISLEPFFNHSRLKSFYADNNEINAE 225
               ++ +      S+E L+L  N         +          +R+     +   ++  
Sbjct: 227 AALALARA-AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 108 PSLKYLSLFGS-ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANM----TSL 162
           P L+ ++L     +   + +     L +  +++  +I        + + LA M     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 163 RILDVSSNQLTG----SISSSPLVHLTSIEELYLSNNHFQI 199
           + L+V SN ++G    ++  + L   TS+ EL + N    +
Sbjct: 96  KSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 17/146 (11%)

Query: 3   SFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLS 62
             P+L +L + S    D         +  NLE L L            +    P      
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK-- 248

Query: 63  MIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGT 122
                            F +L+ L +  A        + +  + +P L+ + +   +L  
Sbjct: 249 ---------------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 123 NSSRILDRGLCSLVHLQVLNIAYNDL 148
             +R+L   +  + HL+ +N+ YN L
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 19/170 (11%)

Query: 280 TWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDV-LPSL 338
           + +L+    L  L +          +       L  L+I +      +  +I    LP+L
Sbjct: 165 SPVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 339 FSLNISMNA----LDGSIPS-----SFGNMKFLQILDLSNNHLTGEIPEHLVVGCV--NL 387
             L + +       DG +       S      L+ L + +      + E  +   +   L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 388 ESLALSNNSL--EG--HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF 433
           E++ +S   L  EG   +      + +L+++ ++ N+   E+ + L K  
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 21/179 (11%), Positives = 61/179 (34%), Gaps = 15/179 (8%)

Query: 31  TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEG 90
                +  +   +       ++ +  ++  L+ +  +    +     P   +L+ L++  
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR-PNLKSLEIIS 202

Query: 91  ALIALNTSFLQIIGES-MPSLKYLSLFGS---ILGTNSSRILDRGLC--SLVHLQVLNIA 144
               L  S ++ I  S +P+L+ L L+             +           +L+ L I 
Sbjct: 203 G--GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 145 YNDLRGSLPWCLAN---MTSLRILDVSSNQLT---GSISSSPLVHLTSIEELYLSNNHF 197
             + +  +         +  L  +D+S+  LT     +    +  +  ++ + +  N+ 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 25/176 (14%)

Query: 12  LSSNNFTDIATATQELHNFTNLEYLTL-DSSSLHISLLQSIASIFPSLKNLSMIGCEV-N 69
           +S     D++     L     L  L +  +++L I          P+LK+L +I   + +
Sbjct: 156 ISWIEQVDLSPV---LDAMPLLNNLKIKGTNNLSIGKKPR-----PNLKSLEIISGGLPD 207

Query: 70  GLVRGQGFPHFKSLEHLDME--------GALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
            +V         +LE L +            + +         +  P+LK+L +  +   
Sbjct: 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGIVDAEEQ 265

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGS----LPWCLANMTSLRILDVSSNQLT 173
                +       L  L+ ++I+   L       L   +  +  L+ +++  N L+
Sbjct: 266 NVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	628
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.7

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-63  Score=547.83  Aligned_cols=576  Identities=29%  Similarity=0.395  Sum_probs=502.8

Q ss_pred             CCCCCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchh--HhhccCCCCceEecccccccccccCCCcc
Q 039739            1 MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQ--SIASIFPSLKNLSMIGCEVNGLVRGQGFP   78 (628)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~~~~~~   78 (628)
                      |.++++|+.++++.+.+.   .+++.++++++|++|+|++|.+.+..+.  .+.. +++|++|++++|.+....+...+.
T Consensus        73 l~~L~~L~~l~~~~~~~~---~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHIN---GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             TTTCTTCCEEECTTSCEE---ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCC
T ss_pred             HhccCcccccCCcCCCcC---CCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhc
Confidence            345677777777766543   3567899999999999999999887777  8888 999999999999998777775568


Q ss_pred             ccCccceeecccchhhcCcchhhh---hhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchh
Q 039739           79 HFKSLEHLDMEGALIALNTSFLQI---IGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC  155 (628)
Q Consensus        79 ~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  155 (628)
                      ++++|++|++++|  .+.+..+..   +.. +++|++|++++|.+..    ..  .+..+++|++|++++|.+.+..|. 
T Consensus       149 ~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~--~~~~l~~L~~L~Ls~n~l~~~~~~-  218 (768)
T 3rgz_A          149 KLNSLEVLDLSAN--SISGANVVGWVLSDG-CGELKHLAISGNKISG----DV--DVSRCVNLEFLDVSSNNFSTGIPF-  218 (768)
T ss_dssp             CCTTCSEEECCSS--CCEEETHHHHHHTTC-CTTCCEEECCSSEEES----CC--BCTTCTTCCEEECCSSCCCSCCCB-
T ss_pred             cCCCCCEEECCCC--ccCCcCChhhhhhcc-CCCCCEEECCCCcccc----cC--CcccCCcCCEEECcCCcCCCCCcc-
Confidence            9999999999999  666666655   566 9999999999998832    22  348899999999999999977776 


Q ss_pred             hhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccC
Q 039739          156 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAP  235 (628)
Q Consensus       156 l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  235 (628)
                      +..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..+..   .+++|++|++++|.+.+.++......+ 
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~-  293 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGAC-  293 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTC-
T ss_pred             cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhc-
Confidence            99999999999999999877776 7999999999999999988655532   789999999999998876665533221 


Q ss_pred             cccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCC-ccC
Q 039739          236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK-RLG  314 (628)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~  314 (628)
                       .+|++|++ ..+...+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|+
T Consensus       294 -~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~  371 (768)
T 3rgz_A          294 -DTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL  371 (768)
T ss_dssp             -TTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred             -CcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence             48999999 777788888999999999999999999998888887668999999999999999877888888877 999


Q ss_pred             EEEccCCcCCcccchhhhhh-CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739          315 MLDISNNNFRGHIPVEIGDV-LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS  393 (628)
Q Consensus       315 ~L~l~~~~i~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  393 (628)
                      +|++++|.+.+.++..+... +++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++.. +..+++|+.|+++
T Consensus       372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~  450 (768)
T 3rgz_A          372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLW  450 (768)
T ss_dssp             EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECC
T ss_pred             EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECC
Confidence            99999999988777766532 578999999999999889999999999999999999998666655 4468999999999


Q ss_pred             CCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCC
Q 039739          394 NNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI  473 (628)
Q Consensus       394 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  473 (628)
                      +|.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus       451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  530 (768)
T 3rgz_A          451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI  530 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence            99999888888999999999999999999899999999999999999999999999999999999999999999999889


Q ss_pred             cccccCCCCCCEEEccCCcCcCCCCCCC----------------------------------------------------
Q 039739          474 PVEFCQLDWLQILDISDNNISGSLPSCF----------------------------------------------------  501 (628)
Q Consensus       474 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------------------------------------------------  501 (628)
                      |..+..+++|+.|++++|++.+..|..+                                                    
T Consensus       531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  610 (768)
T 3rgz_A          531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR  610 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred             CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence            9999999999999999999886655421                                                    


Q ss_pred             -------------------CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCC
Q 039739          502 -------------------HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH  562 (628)
Q Consensus       502 -------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  562 (628)
                                         ...+|+.|++++|++++.+|.. ++.+++|+.|++++|++++.+|..++++++|+.|+|++
T Consensus       611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS  689 (768)
T ss_dssp             CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             cccccccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence                               1356889999999999999887 89999999999999999999999999999999999999


Q ss_pred             CcCCccCCccccCCCCCcEEECCCCcccccccccccc
Q 039739          563 NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN  599 (628)
Q Consensus       563 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~  599 (628)
                      |++++.+|+.+.++++|++|++++|+++|.||+.-+-
T Consensus       690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  726 (768)
T 3rgz_A          690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF  726 (768)
T ss_dssp             SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred             CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhh
Confidence            9999999999999999999999999999999987443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.2e-60  Score=523.08  Aligned_cols=583  Identities=31%  Similarity=0.405  Sum_probs=504.8

Q ss_pred             CCCCEEeCCCCCCCCccc---hhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccC-CCcccc
Q 039739            5 PSLNTLYLSSNNFTDIAT---ATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRG-QGFPHF   80 (628)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l   80 (628)
                      .+++.|+|+++.+.+  .   +++.+.++++|+.++++.+.+. ..+..+.. +++|++|++++|.+.+.++. ..+.++
T Consensus        50 ~~v~~L~L~~~~l~g--~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~l~~l  125 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNV--GFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSC  125 (768)
T ss_dssp             TEEEEEECTTSCCCE--EHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCC-CTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred             CcEEEEECCCCCcCC--ccCccChhHhccCcccccCCcCCCcC-CCchhhcc-CCCCCEEECCCCcCCCcCCChHHHhCC
Confidence            468899999998877  4   7788999999999999988764 23466778 99999999999998866553 268999


Q ss_pred             CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccccc---ccCCCCCcEEEccCCcccccCchhhh
Q 039739           81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRG---LCSLVHLQVLNIAYNDLRGSLPWCLA  157 (628)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~l~  157 (628)
                      ++|++|++++|  .+.+..+..+...+++|++|++++|.+..    ..+..   +.++++|++|++++|.+.+..+.  .
T Consensus       126 ~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~  197 (768)
T 3rgz_A          126 SGLKFLNVSSN--TLDFPGKVSGGLKLNSLEVLDLSANSISG----ANVVGWVLSDGCGELKHLAISGNKISGDVDV--S  197 (768)
T ss_dssp             TTCCEEECCSS--EEECCSSCCSCCCCTTCSEEECCSSCCEE----ETHHHHHHTTCCTTCCEEECCSSEEESCCBC--T
T ss_pred             CCCCEEECcCC--ccCCcCCHHHhccCCCCCEEECCCCccCC----cCChhhhhhccCCCCCEEECCCCcccccCCc--c
Confidence            99999999999  56666666553339999999999999843    33234   78999999999999999865543  7


Q ss_pred             cCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcc
Q 039739          158 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF  237 (628)
Q Consensus       158 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  237 (628)
                      .+++|++|++++|.+.+.+|.  +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..     ...
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~  269 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-----PLK  269 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-----CCT
T ss_pred             cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-----ccC
Confidence            899999999999999865654  9999999999999999874333 46789999999999999987655432     455


Q ss_pred             cceeeeccCCCCCCcccccccccC-CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcc-cccCCccCE
Q 039739          238 QLSRLSLSSGYGDGFIFPKFLYHQ-HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLP-IHSHKRLGM  315 (628)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~  315 (628)
                      +|++|++ ..+...+.+|..+... ++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+.. +..+++|++
T Consensus       270 ~L~~L~L-~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          270 SLQYLSL-AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             TCCEEEC-CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             CCCEEEC-cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            8999999 6777777788877764 999999999999988888776 79999999999999988656654 889999999


Q ss_pred             EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccC--CCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739          316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGN--MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS  393 (628)
Q Consensus       316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  393 (628)
                      |++++|.+.+.+|..+....++|+.|++++|.+.+..|..+..  +++|+.|++++|.+.+.++.. +..+++|++|+++
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls  426 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLS  426 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECC
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECc
Confidence            9999999988899888874459999999999998877777766  889999999999998666655 4469999999999


Q ss_pred             CCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCC
Q 039739          394 NNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI  473 (628)
Q Consensus       394 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  473 (628)
                      +|.+++..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..
T Consensus       427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence            99999888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccc----------------------------
Q 039739          474 PVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGT----------------------------  524 (628)
Q Consensus       474 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~----------------------------  524 (628)
                      |..+..+++|++|++++|++.+..|..+. +++|+.|++++|++++.+|...                            
T Consensus       507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            99999999999999999999988887665 8999999999999987776542                            


Q ss_pred             -----------------------------------------cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739          525 -----------------------------------------FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN  563 (628)
Q Consensus       525 -----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  563 (628)
                                                               +..+++|+.|++++|++++.+|..++.+++|+.|+|++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                     234578999999999999999999999999999999999


Q ss_pred             cCCccCCccccCCCCCcEEECCCCcccccccccccccc----ccccccCCc
Q 039739          564 NLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT----LHESYNNSS  610 (628)
Q Consensus       564 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~----~~~~~~~~~  610 (628)
                      ++++.+|+.|.++++|++|++++|+++|.||+.+.+++    ++..+|+..
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            99999999999999999999999999999999998876    666777755

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.6e-52  Score=456.27  Aligned_cols=571  Identities=19%  Similarity=0.182  Sum_probs=413.2

Q ss_pred             CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739            5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE   84 (628)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   84 (628)
                      +++++|++++|.+++  ..+..|+++++|++|++++|.+++..+..+.. +++|++|++++|.+.. ++...|.++++|+
T Consensus        25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQ-LSDKTFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCC-CCTTTTTTCTTCS
T ss_pred             CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCc-cChhhhccCCCCC
Confidence            467888888888777  34456788888888888888887777777777 8888888888887764 4444678888888


Q ss_pred             eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhh--cCCCC
Q 039739           85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLA--NMTSL  162 (628)
Q Consensus        85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~--~l~~L  162 (628)
                      +|++++|  .+.+..+..++. +++|++|++++|.+..    .++..+.++++|++|++++|.+.+..+..+.  .+++|
T Consensus       101 ~L~L~~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A          101 ELHLMSN--SIQKIKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             EEECCSS--CCCCCCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             EEECCCC--ccCccChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            8888887  444444456666 8888888888887744    4445677788888888888887765555544  45788


Q ss_pred             CEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCC--CcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739          163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLE--PFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS  240 (628)
Q Consensus       163 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  240 (628)
                      ++|++++|.+. .++...+..+++|+.+++.++.+.......  .....++|+.|++++|.+.+..+..+. .....+|+
T Consensus       174 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~  251 (680)
T 1ziw_A          174 KKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLT  251 (680)
T ss_dssp             SEEECTTCCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCC
T ss_pred             cEEECCCCccc-ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCC
Confidence            88888888777 344436777888888888777654211000  001236788888888877665443322 22223588


Q ss_pred             eeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCC---------CCcccccCC
Q 039739          241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP---------FQLPIHSHK  311 (628)
Q Consensus       241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~l~~~~  311 (628)
                      +|++ ..+......+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++++.....         ....+..++
T Consensus       252 ~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          252 MLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             EEEC-TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             EEEC-CCCCcCccCcccccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            8888 6666666667778888888888888888775555554 6788888888877644321         112566788


Q ss_pred             ccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCc-c-cccccC--CCCccEEECcCCcccCccchhhhcCCccc
Q 039739          312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS-I-PSSFGN--MKFLQILDLSNNHLTGEIPEHLVVGCVNL  387 (628)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  387 (628)
                      +|++|++++|.+.+..+..+. .+++|+.|++++|.+... + ...+..  .++|+.|++++|++. .++...+..+++|
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L  407 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHL  407 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred             CCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eEChhhhhCCCCC
Confidence            888888888888754444444 378888888888865422 1 112222  257888888888887 4444556668888


Q ss_pred             cEEEccCCccCCccc-ccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC--CccCccccCCCCcceEEC
Q 039739          388 ESLALSNNSLEGHMF-SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS--GKIPRWLGNLTRLQHIMM  464 (628)
Q Consensus       388 ~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l  464 (628)
                      +.|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.  +..|..+.++++|+.|++
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            888888888765433 56778888888888888887777778888888888888888775  456778888888999999


Q ss_pred             CCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC---------CCCCCcccEEecCCCcCcCCCCccccccCCCccEEE
Q 039739          465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS---------CFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLD  535 (628)
Q Consensus       465 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  535 (628)
                      ++|.+.+..+..+..+++|++|++++|+++...+.         ...+++|+.|++++|++. .++..++.++++|+.|+
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID  566 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence            99888877777788888999999998888753221         223678888999988886 67766688888999999


Q ss_pred             CCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcccc-CCCCCcEEECCCCcccccc
Q 039739          536 LSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC-KLNQLQLLDLSNNSLHGSI  593 (628)
Q Consensus       536 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~l~~~~~~~~i  593 (628)
                      +++|++++.++..|..+++|+.|++++|++++..++.+. .+++|+.|++++|++...-
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            999888877777788888899999999988866666666 6788889999988887543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.1e-52  Score=453.99  Aligned_cols=573  Identities=20%  Similarity=0.179  Sum_probs=473.0

Q ss_pred             CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739            7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL   86 (628)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   86 (628)
                      -+.++++++.++.   +|..+.  +++++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|
T Consensus         6 ~~~~~cs~~~L~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L   78 (680)
T 1ziw_A            6 HEVADCSHLKLTQ---VPDDLP--TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPE-LCQKLPMLKVL   78 (680)
T ss_dssp             SSEEECCSSCCSS---CCSCSC--TTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCTT-HHHHCTTCCEE
T ss_pred             CCeeECCCCCccc---cccccC--CCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccCccCHH-HHhcccCcCEE
Confidence            4678999988877   454443  78999999999999877778888 99999999999998866554 78999999999


Q ss_pred             ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEE
Q 039739           87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILD  166 (628)
Q Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  166 (628)
                      ++++|  .+.......++. +++|++|++++|.+..    +++..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus        79 ~L~~n--~l~~l~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           79 NLQHN--ELSQLSDKTFAF-CTNLTELHLMSNSIQK----IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             ECCSS--CCCCCCTTTTTT-CTTCSEEECCSSCCCC----CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             ECCCC--ccCccChhhhcc-CCCCCEEECCCCccCc----cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            99999  555444446777 9999999999999866    7767899999999999999999988888899999999999


Q ss_pred             ccccccccccCCCCC--CCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeec
Q 039739          167 VSSNQLTGSISSSPL--VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL  244 (628)
Q Consensus       167 l~~~~~~~~l~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  244 (628)
                      +++|.+.+ ++...+  ..+++|++|++++|.+.+ .....+..+.+|+.+++.++.+...............+++.|.+
T Consensus       152 L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L  229 (680)
T 1ziw_A          152 LSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL  229 (680)
T ss_dssp             CCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred             ccCCcccc-cCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence            99999873 333233  356899999999998874 45567888999999999988776543333222234468999999


Q ss_pred             cCCCCCCcccccccccCCC--ccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCc
Q 039739          245 SSGYGDGFIFPKFLYHQHD--LEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN  322 (628)
Q Consensus       245 ~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  322 (628)
                       ..+...+..+.++..++.  |+.|++++|.+.+..+..+ ..+++|++|+++++.+.+..+..+..+++|+.|+++++.
T Consensus       230 -~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          230 -SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF  307 (680)
T ss_dssp             -TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred             -cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence             677777777888877754  9999999999886555554 789999999999999988888889999999999999875


Q ss_pred             CCcc-----cc---hhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccC-ccchhhhcC--CccccEEE
Q 039739          323 FRGH-----IP---VEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTG-EIPEHLVVG--CVNLESLA  391 (628)
Q Consensus       323 i~~~-----~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~--~~~L~~L~  391 (628)
                      ..+.     +|   ......+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. .++...+..  .++|+.|+
T Consensus       308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~  387 (680)
T 1ziw_A          308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN  387 (680)
T ss_dssp             CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred             hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence            4432     22   2223348899999999999998888889999999999999987432 333333322  36899999


Q ss_pred             ccCCccCCcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCC
Q 039739          392 LSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE  470 (628)
Q Consensus       392 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  470 (628)
                      +++|.+.+..+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  467 (680)
T 1ziw_A          388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK  467 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred             CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence            99999998878888899999999999999986555 68889999999999999998888889999999999999999886


Q ss_pred             --CCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCC-------CccccccCCCccEEECCCcc
Q 039739          471 --GPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQL-------KRGTFFNSYSLVTLDLSYNR  540 (628)
Q Consensus       471 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~-------~~~~~~~~~~L~~L~l~~~~  540 (628)
                        +..|..+..+++|+.|++++|++++..+..+. +++|+.|++++|++.+..       +...+..+++|+.|++++|+
T Consensus       468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred             ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence              46788899999999999999999977776654 899999999999986431       11237889999999999999


Q ss_pred             cCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccc
Q 039739          541 LNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL  597 (628)
Q Consensus       541 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~  597 (628)
                      ++..++..|..+++|+.|++++|+++...+..|.++++|+.|++++|++++..|..+
T Consensus       548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence            996666779999999999999999996556668899999999999999996555533

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.2e-50  Score=431.83  Aligned_cols=540  Identities=19%  Similarity=0.168  Sum_probs=407.4

Q ss_pred             CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739            7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL   86 (628)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   86 (628)
                      -+++++++..++.   +|..+.  +++++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|
T Consensus        14 ~~~~~c~~~~l~~---iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L   86 (606)
T 3t6q_A           14 NKTYNCENLGLNE---IPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHED-TFQSQHRLDTL   86 (606)
T ss_dssp             TTEEECTTSCCSS---CCTTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred             CceEECCCCCccc---CcCCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChh-hccCccccCee
Confidence            3467777776665   444444  36888888888888766777877 88888888888887755444 78888888888


Q ss_pred             ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEE
Q 039739           87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILD  166 (628)
Q Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  166 (628)
                      ++++|  .+.+..+..++. +++|++|++++|.+..    +.+..+.++++|++|++++|.+.+.....+..+++|++|+
T Consensus        87 ~Ls~n--~l~~~~~~~~~~-l~~L~~L~L~~n~i~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  159 (606)
T 3t6q_A           87 VLTAN--PLIFMAETALSG-PKALKHLFFIQTGISS----IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD  159 (606)
T ss_dssp             ECTTC--CCSEECTTTTSS-CTTCCEEECTTSCCSC----GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred             eCCCC--cccccChhhhcc-cccccEeeccccCccc----CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence            88888  556666667777 8888888888888765    5445678888888888888888754334444488888888


Q ss_pred             ccccccccccCCCCCCCCCccc--EEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeec
Q 039739          167 VSSNQLTGSISSSPLVHLTSIE--ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL  244 (628)
Q Consensus       167 l~~~~~~~~l~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  244 (628)
                      +++|.+. .++...++.+++|+  .|++++|.+....+ .. .....|+.++++++........    ......++.+.+
T Consensus       160 L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~  232 (606)
T 3t6q_A          160 FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GA-FDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWL  232 (606)
T ss_dssp             CCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECT-TT-TTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEEC
T ss_pred             cccCccc-ccChhhhhhhcccceeEEecCCCccCccCh-hH-hhhccccccccCCchhHHHHhh----hccccchhheec
Confidence            8888877 34333577777787  78888887764332 22 2335677777776642111000    011112222222


Q ss_pred             cCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCc--cCcEEEeecCCCCCCCCcccccCCccCEEEccCCc
Q 039739          245 SSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN  322 (628)
Q Consensus       245 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  322 (628)
                      .              .+..+...         .++...+..+.  +|+.|+++++.+.+..+..+..+++|++|++++|.
T Consensus       233 ~--------------~~~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  289 (606)
T 3t6q_A          233 G--------------TFEDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH  289 (606)
T ss_dssp             C--------------CCTTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred             h--------------hhcccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence            0              00111110         11222223332  67888888888887777778888999999999998


Q ss_pred             CCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcc-
Q 039739          323 FRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHM-  401 (628)
Q Consensus       323 i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-  401 (628)
                      +. .+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+...++...+..+++|++|++++|.+.+.. 
T Consensus       290 l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  367 (606)
T 3t6q_A          290 LS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC  367 (606)
T ss_dssp             CS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred             cC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence            87 77777654 7899999999999887777788889999999999998876777766777899999999999887654 


Q ss_pred             -cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccC
Q 039739          402 -FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQ  479 (628)
Q Consensus       402 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  479 (628)
                       +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..
T Consensus       368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  447 (606)
T 3t6q_A          368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG  447 (606)
T ss_dssp             STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred             cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence             5567789999999999999887778888999999999999998876554 34888999999999999998888888999


Q ss_pred             CCCCCEEEccCCcCcCCC-C--CCC-CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCC
Q 039739          480 LDWLQILDISDNNISGSL-P--SCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL  555 (628)
Q Consensus       480 l~~L~~L~l~~~~~~~~~-~--~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  555 (628)
                      +++|++|++++|++.+.. +  ..+ .+++|+.|++++|++.+..+.. +..+++|+.|++++|++++..|+.+..+++|
T Consensus       448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hccccCCCEEECCCCccCcCChhHhCccccc
Confidence            999999999999987521 1  222 3789999999999997555544 8999999999999999999999999999999


Q ss_pred             cEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739          556 SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       556 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip  594 (628)
                       .|++++|++++..|+.+..+++|++|++++|++....+
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence             99999999998888889999999999999999986444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3e-48  Score=419.63  Aligned_cols=520  Identities=18%  Similarity=0.151  Sum_probs=407.5

Q ss_pred             CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739            5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE   84 (628)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   84 (628)
                      +++++|++++|.+++  ..+..|+++++|++|++++|.+.+..+..|.. +++|++|++++|.+....+. .|.++++|+
T Consensus        33 ~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~  108 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAET-ALSGPKALK  108 (606)
T ss_dssp             TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTT-TTSSCTTCC
T ss_pred             CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChh-hhccccccc
Confidence            469999999999988  45678999999999999999999887888998 99999999999998866554 899999999


Q ss_pred             eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCC-
Q 039739           85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLR-  163 (628)
Q Consensus        85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~-  163 (628)
                      +|++++|  .+.+..+..++. +++|++|++++|.+..    +....+..+++|++|++++|.+.+..+..+..+++|+ 
T Consensus       109 ~L~L~~n--~i~~l~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3t6q_A          109 HLFFIQT--GISSIDFIPLHN-QKTLESLYLGSNHISS----IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN  181 (606)
T ss_dssp             EEECTTS--CCSCGGGSCCTT-CTTCCEEECCSSCCCC----CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred             Eeecccc--CcccCCcchhcc-CCcccEEECCCCcccc----cCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence            9999999  555555566777 9999999999999855    4333556699999999999999988888999999999 


Q ss_pred             -EEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceee
Q 039739          164 -ILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL  242 (628)
Q Consensus       164 -~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  242 (628)
                       +|++++|.+.+ ++... ....+|++|++++|....    ..+..+..+....+....+..              +.  
T Consensus       182 l~L~l~~n~l~~-~~~~~-~~~~~L~~L~l~~~~~~~----~~~~~l~~~~l~~l~~~~~~~--------------~~--  239 (606)
T 3t6q_A          182 LSLNLNGNDIAG-IEPGA-FDSAVFQSLNFGGTQNLL----VIFKGLKNSTIQSLWLGTFED--------------MD--  239 (606)
T ss_dssp             EEEECTTCCCCE-ECTTT-TTTCEEEEEECTTCSCHH----HHHHHTTTCEEEEEECCCCTT--------------SC--
T ss_pred             eEEecCCCccCc-cChhH-hhhccccccccCCchhHH----HHhhhccccchhheechhhcc--------------cc--
Confidence             99999999984 44424 445789999999886221    122333333332222111111              00  


Q ss_pred             eccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCc
Q 039739          243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN  322 (628)
Q Consensus       243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  322 (628)
                          ...........+.. ..|+.++++++.+.+. +...+..+++|++|+++++.++ ..+..+..+++|++|++++|.
T Consensus       240 ----~~~i~~~~~~~l~~-~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          240 ----DEDISPAVFEGLCE-MSVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             ----CCCCCGGGGGGGGG-SEEEEEECTTCCCSSC-CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred             ----ccccChhHhchhhc-CceeEEEeecCccCcc-CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence                00111111112222 2688888888887744 4343478888899999888877 455667888999999999998


Q ss_pred             CCcccchhhhhhCCCccEEEcccccCCCcccc-cccCCCCccEEECcCCcccCccc--hhhhcCCccccEEEccCCccCC
Q 039739          323 FRGHIPVEIGDVLPSLFSLNISMNALDGSIPS-SFGNMKFLQILDLSNNHLTGEIP--EHLVVGCVNLESLALSNNSLEG  399 (628)
Q Consensus       323 i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~  399 (628)
                      +.+..+..+.. +++|+.|++++|.+.+.++. .+..+++|+.|++++|.+. ...  ...+..+++|++|++++|.+.+
T Consensus       313 l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          313 FENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             CSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred             cCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCc
Confidence            88554555544 88999999999988755544 4888999999999999887 333  3345568999999999998887


Q ss_pred             cccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC---Ccc
Q 039739          400 HMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP---IPV  475 (628)
Q Consensus       400 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~  475 (628)
                      ..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.   .+.
T Consensus       391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  470 (606)
T 3t6q_A          391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN  470 (606)
T ss_dssp             ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred             CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence            777788889999999999998876654 4478899999999999999878888889999999999999988752   235


Q ss_pred             cccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCC
Q 039739          476 EFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQ  554 (628)
Q Consensus       476 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  554 (628)
                      .+..+++|+.|++++|++++..+..+. +++|+.|++++|++++..+.. +..+++| .|++++|++++.+|..+..+++
T Consensus       471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~  548 (606)
T 3t6q_A          471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHISIILPSLLPILSQ  548 (606)
T ss_dssp             GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred             hhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCcccccCHhhcccCCC
Confidence            588899999999999999877776665 889999999999997665555 8899999 9999999999888999999999


Q ss_pred             CcEEECCCCcCCcc
Q 039739          555 LSHLILGHNNLEGE  568 (628)
Q Consensus       555 L~~L~l~~~~i~~~  568 (628)
                      |+.|++++|++...
T Consensus       549 L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          549 QRTINLRQNPLDCT  562 (606)
T ss_dssp             SSEEECTTCCEECS
T ss_pred             CCEEeCCCCCcccc
Confidence            99999999999854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-48  Score=419.90  Aligned_cols=531  Identities=20%  Similarity=0.212  Sum_probs=373.3

Q ss_pred             CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739            7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL   86 (628)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   86 (628)
                      -++++++++.++.   +|..+.  +++++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|
T Consensus        13 ~~~~~c~~~~l~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L   85 (606)
T 3vq2_A           13 NITYQCMDQKLSK---VPDDIP--SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDK-AWHGLHHLSNL   85 (606)
T ss_dssp             TTEEECTTSCCSS---CCTTSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred             CCceEccCCCccc---CCCCCC--CCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHH-HhhchhhcCEe
Confidence            4678888888877   444443  78999999999998777778888 99999999999988865454 78999999999


Q ss_pred             ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCEE
Q 039739           87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRIL  165 (628)
Q Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L  165 (628)
                      ++++|  .+.+..+..++. +++|++|++++|.+..    +++..++++++|++|++++|.+.+ .+|..+..+++|++|
T Consensus        86 ~Ls~n--~l~~~~p~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           86 ILTGN--PIQSFSPGSFSG-LTSLENLVAVETKLAS----LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             ECTTC--CCCCCCTTSSTT-CTTCCEEECTTSCCCC----SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             ECCCC--cccccChhhcCC-cccCCEEEccCCcccc----ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            99999  666666788888 9999999999998866    665679999999999999999875 568899999999999


Q ss_pred             EccccccccccCCCCCCCCCccc----EEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee
Q 039739          166 DVSSNQLTGSISSSPLVHLTSIE----ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR  241 (628)
Q Consensus       166 ~l~~~~~~~~l~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  241 (628)
                      ++++|.+. .++...++.+++|+    ++++++|.+.. ++...+... +|+++++++|.+.+..               
T Consensus       159 ~Ls~n~l~-~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~-~L~~L~L~~n~~~~~~---------------  220 (606)
T 3vq2_A          159 DLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGI-KLHELTLRGNFNSSNI---------------  220 (606)
T ss_dssp             ECCSSCCC-EECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCHHH---------------
T ss_pred             EccCCcce-ecChhhhhhhhccccccceeeccCCCcce-eCcccccCc-eeeeeeccCCccchhH---------------
Confidence            99999988 45444677776665    79999998873 344444444 7888888887664321               


Q ss_pred             eeccCCCCCCcccccccccCCCccEEEccCCcccC-----cCchhHHhcCc--cCcEEEe-ecCCCCCCCCcccccCCcc
Q 039739          242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-----EFPTWLLENNT--KLRQLSL-VNDSLGGPFQLPIHSHKRL  313 (628)
Q Consensus       242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~l~~~~~L  313 (628)
                                  .|..+..++.++.+++....+..     ......+..+.  .++.+.+ ..+.+.+..+. +..+++|
T Consensus       221 ------------~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L  287 (606)
T 3vq2_A          221 ------------MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANV  287 (606)
T ss_dssp             ------------HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTC
T ss_pred             ------------HHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCC
Confidence                        22233333344433332111110     01111111221  2344444 23333333333 5566666


Q ss_pred             CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739          314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS  393 (628)
Q Consensus       314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  393 (628)
                      +.++++++.+. .++ .+.. +++|+.|++++|.+ +.+| .+ .+++|+.|++++|......   .+..+++|++|+++
T Consensus       288 ~~L~l~~~~~~-~l~-~l~~-~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls  358 (606)
T 3vq2_A          288 SAMSLAGVSIK-YLE-DVPK-HFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLS  358 (606)
T ss_dssp             SEEEEESCCCC-CCC-CCCT-TCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECC
T ss_pred             CEEEecCccch-hhh-hccc-cccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---hhccCCCCCEEECc
Confidence            66666666664 444 3332 56677777777766 3555 33 6677777777776443222   23346777777777


Q ss_pred             CCccCCcc--cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCC
Q 039739          394 NNSLEGHM--FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLE  470 (628)
Q Consensus       394 ~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  470 (628)
                      +|.+++..  +..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  437 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK  437 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence            77665432  445556777777777777766 345666777777777777777765555 56677777777777777777


Q ss_pred             CCCcccccCCCCCCEEEccCCcCcCC-CCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739          471 GPIPVEFCQLDWLQILDISDNNISGS-LPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW  548 (628)
Q Consensus       471 ~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  548 (628)
                      +..|..+..+++|+.|++++|++.+. .+..+. +++|+.|++++|++++..+.. +..+++|+.|++++|++++.+|..
T Consensus       438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~  516 (606)
T 3vq2_A          438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSH  516 (606)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGG
T ss_pred             ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh-hcccccCCEEECCCCcCCCcCHHH
Confidence            66677777777777777777777652 454443 677778888888776544444 888999999999999999888999


Q ss_pred             hcCCCCCcEEECCCCcCCccCCccccCCC-CCcEEECCCCccccccc
Q 039739          549 VDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       549 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~~~~ip  594 (628)
                      +..+++|+.|++++|+++ .+|..+..++ +|++|++++|++....|
T Consensus       517 ~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          517 YNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999999 7888898887 69999999999985443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-47  Score=411.70  Aligned_cols=519  Identities=20%  Similarity=0.184  Sum_probs=408.3

Q ss_pred             CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739            5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE   84 (628)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   84 (628)
                      ++|++|++++|.+++  ..+..|+++++|++|++++|.+++..+..+.. +++|++|++++|.+....|. .|.++++|+
T Consensus        32 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~  107 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPG-SFSGLTSLE  107 (606)
T ss_dssp             TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTT-SSTTCTTCC
T ss_pred             CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccChh-hcCCcccCC
Confidence            579999999999988  44567999999999999999999877888888 99999999999998866564 899999999


Q ss_pred             eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCC-
Q 039739           85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLR-  163 (628)
Q Consensus        85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~-  163 (628)
                      +|++++|  .+.+..+..+++ +++|++|++++|.+..  ..++ ..+.++++|++|++++|.+.+..+..+..+++|+ 
T Consensus       108 ~L~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          108 NLVAVET--KLASLESFPIGQ-LITLKKLNVAHNFIHS--CKLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ  181 (606)
T ss_dssp             EEECTTS--CCCCSSSSCCTT-CTTCCEEECCSSCCCC--CCCC-GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred             EEEccCC--ccccccccccCC-CCCCCEEeCCCCcccc--eech-HhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence            9999999  555555566777 9999999999998832  1144 5899999999999999999987777777666554 


Q ss_pred             ---EEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739          164 ---ILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS  240 (628)
Q Consensus       164 ---~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  240 (628)
                         +|++++|.+. .++...+... +|++|++++|.+.+......+..++.++.+++..+.+.....           +.
T Consensus       182 ~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-----------l~  248 (606)
T 3vq2_A          182 VNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-----------LE  248 (606)
T ss_dssp             CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-----------CS
T ss_pred             ccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc-----------cc
Confidence               8999999998 6776455544 999999999987644444557788888888876543322100           00


Q ss_pred             eeeccCCCCCCcccccccccCCCccEEEc-cCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEcc
Q 039739          241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDL-SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDIS  319 (628)
Q Consensus       241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  319 (628)
                              ......+..+... .++.+.+ ..+.+.+..+.  +..+++|+.|+++++.+....  .+..+++|++|+++
T Consensus       249 --------~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~  315 (606)
T 3vq2_A          249 --------IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSII  315 (606)
T ss_dssp             --------CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEE
T ss_pred             --------ccChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcc
Confidence                    0011111222222 4666666 45556655555  467888888888888876533  67788899999999


Q ss_pred             CCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCcc-chhhhcCCccccEEEccCCccC
Q 039739          320 NNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI-PEHLVVGCVNLESLALSNNSLE  398 (628)
Q Consensus       320 ~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~  398 (628)
                      +|.+ +.+|. +  .+++|+.|++++|...+..  .+..+++|+.|++++|.+.... ....+..+++|++|++++|.+.
T Consensus       316 ~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  389 (606)
T 3vq2_A          316 RCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI  389 (606)
T ss_dssp             SCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred             cccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence            9988 47774 3  4889999999998655333  5678899999999999876321 1233556899999999999876


Q ss_pred             CcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCC-CCccc
Q 039739          399 GHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEG-PIPVE  476 (628)
Q Consensus       399 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~  476 (628)
                      .. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..
T Consensus       390 ~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  468 (606)
T 3vq2_A          390 IM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV  468 (606)
T ss_dssp             EE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             cc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence            53 3677788999999999999887766 678889999999999999988888889999999999999999886 36778


Q ss_pred             ccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCC-C
Q 039739          477 FCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS-Q  554 (628)
Q Consensus       477 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~  554 (628)
                      +..+++|++|++++|++++..+..+. +++|+.|++++|++++..+.. +..+++|+.|++++|+++ .+|..+..++ +
T Consensus       469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~  546 (606)
T 3vq2_A          469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIE-TSKGILQHFPKS  546 (606)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEECTTSCCC-CEESCGGGSCTT
T ss_pred             hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEECCCCcCc-ccCHhHhhhccc
Confidence            89999999999999999887777654 889999999999997655555 889999999999999998 5666688887 5


Q ss_pred             CcEEECCCCcCCcc
Q 039739          555 LSHLILGHNNLEGE  568 (628)
Q Consensus       555 L~~L~l~~~~i~~~  568 (628)
                      |+.|++++|++...
T Consensus       547 L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          547 LAFFNLTNNSVACI  560 (606)
T ss_dssp             CCEEECCSCCCCCS
T ss_pred             CcEEEccCCCcccC
Confidence            99999999999843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-44  Score=385.32  Aligned_cols=516  Identities=22%  Similarity=0.210  Sum_probs=377.4

Q ss_pred             CCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739            7 LNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL   86 (628)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   86 (628)
                      .+.++.++..++.   +|..+.  +++++|++++|.+++.....+.. +++|++|++++|.+....+ ..|.++++|++|
T Consensus         9 ~~~~~c~~~~l~~---ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L   81 (570)
T 2z63_A            9 NITYQCMELNFYK---IPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIED-GAYQSLSHLSTL   81 (570)
T ss_dssp             TTEEECCSSCCSS---CCSSSC--SSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred             CcEEEeCCCCccc---cCCCcc--ccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCCccCc-ccccCchhCCEE
Confidence            4567787776766   444333  57999999999998777778888 9999999999998875444 479999999999


Q ss_pred             ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCEE
Q 039739           87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRIL  165 (628)
Q Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L  165 (628)
                      ++++|  .+.+..+..+.. +++|++|++++|.+..    ++...+.++++|++|++++|.+.. .+|..+..+++|++|
T Consensus        82 ~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  154 (570)
T 2z63_A           82 ILTGN--PIQSLALGAFSG-LSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (570)
T ss_dssp             ECTTC--CCCEECTTTTTT-CTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             eCcCC--cCCccCHhhhcC-cccccccccccccccc----CCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence            99998  565555667777 9999999999998866    665568899999999999999886 468899999999999


Q ss_pred             EccccccccccCCCCCCCCCcc----cEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCccccee
Q 039739          166 DVSSNQLTGSISSSPLVHLTSI----EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR  241 (628)
Q Consensus       166 ~l~~~~~~~~l~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  241 (628)
                      ++++|.+. .++...++.+++|    +.+++++|.+... +...+... +|+.+++++|...                  
T Consensus       155 ~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~-~~~~~~~~-~L~~L~l~~n~~~------------------  213 (570)
T 2z63_A          155 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNFDS------------------  213 (570)
T ss_dssp             ECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTC-EEEEEEEESCCSC------------------
T ss_pred             eCcCCccc-eecHHHccchhccchhhhhcccCCCCceec-CHHHhccC-cceeEeccccccc------------------
Confidence            99999987 4444367777777    7889998887643 33344433 5777776654321                  


Q ss_pred             eeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCC--ccCEEEcc
Q 039739          242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK--RLGMLDIS  319 (628)
Q Consensus       242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~  319 (628)
                               ...++..+..++.++...+....+..         ...++.  +        ....+..++  .++.+++.
T Consensus       214 ---------~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~~l~~--~--------~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          214 ---------LNVMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEK--F--------DKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             ---------TTHHHHHHHTTTTCEEEEEEEEECCC---------CSSCEE--C--------CTTTTGGGGGSEEEEEEEE
T ss_pred             ---------ccchhhhhcCccccceeeeccccccC---------chhhhh--c--------chhhhccccccchhhhhhh
Confidence                     11233344445555544443221110         000000  0        001111111  24555555


Q ss_pred             CC-cCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccC
Q 039739          320 NN-NFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLE  398 (628)
Q Consensus       320 ~~-~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  398 (628)
                      ++ .+.+..+..+.. +++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .++.   ..+++|++|++++|.+.
T Consensus       266 ~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~  338 (570)
T 2z63_A          266 YLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGG  338 (570)
T ss_dssp             ETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSC
T ss_pred             cchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCccc
Confidence            55 444445555544 678888888888777 566667777 8888888888776 5554   24778888888888766


Q ss_pred             CcccccccCCCCCcEEEccCccCcCcc--cccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCc-c
Q 039739          399 GHMFSRNFNLTNLRWLQLEGNHFVGEI--PQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP-V  475 (628)
Q Consensus       399 ~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~  475 (628)
                      .....  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+ .+.++++|++|++++|.+.+..+ .
T Consensus       339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSC
T ss_pred             ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchh
Confidence            54333  56788888888888876443  5667788888888888888774444 38888888888888888876554 4


Q ss_pred             cccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCc-CCCCccccccCCCccEEECCCcccCCccchhhcCCC
Q 039739          476 EFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLH-GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS  553 (628)
Q Consensus       476 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  553 (628)
                      .+..+++|++|++++|.+.+..+..+. +++|+.|++++|.+. +.+|.. +..+++|+.|++++|++++..|..+..++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCccccCChhhhhccc
Confidence            577888888888888888877776654 788888888888886 346654 88999999999999999988899999999


Q ss_pred             CCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccc
Q 039739          554 QLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC  596 (628)
Q Consensus       554 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~  596 (628)
                      +|+.|++++|++++..++.|.++++|++|++++|++.+..|..
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            9999999999999777788999999999999999999887753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=403.03  Aligned_cols=535  Identities=20%  Similarity=0.195  Sum_probs=389.1

Q ss_pred             CEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceee
Q 039739            8 NTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLD   87 (628)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   87 (628)
                      +..+.++++++.   +|.   -.+++++|+|++|.+++..+..+.. +++|++|++++|.....++...|.++++|++|+
T Consensus         7 ~~~dcs~~~L~~---vP~---lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A            7 RIAFYRFCNLTQ---VPQ---VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD   79 (844)
T ss_dssp             EEEEESCCCSSC---CCS---SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred             eEEEccCCCCCC---CCC---CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence            466777777777   343   3468999999999888777777888 899999999988666666556889999999999


Q ss_pred             cccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccc-ccccCCCCCcEEEccCCcccccCc-hhhhcCCCCCEE
Q 039739           88 MEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILD-RGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRIL  165 (628)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L  165 (628)
                      +++|  .+.+..+..+.. +++|++|++++|.+...   ++. ..+.++++|++|++++|.+.+..+ ..|.++++|++|
T Consensus        80 Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~---~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           80 LGSS--KIYFLHPDAFQG-LFHLFELRLYFCGLSDA---VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             CTTC--CCCEECTTSSCS-CSSCCCEECTTCCCSSC---CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCC--cCcccCHhHccC-CcccCEeeCcCCCCCcc---cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            9998  666666777887 99999999999888320   222 248889999999999998876544 578889999999


Q ss_pred             EccccccccccCCCCCCCC--CcccEEEcccCeeeeecCCCCcCCCC------cccEEeccCCcccccccccccCccCcc
Q 039739          166 DVSSNQLTGSISSSPLVHL--TSIEELYLSNNHFQIPISLEPFFNHS------RLKSFYADNNEINAEITQSHSLTAPNF  237 (628)
Q Consensus       166 ~l~~~~~~~~l~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~~~  237 (628)
                      ++++|.+.+..+. .+..+  ++|+.|+++.|.+....+. .+..+.      .|+.|++++|.+.+..+..........
T Consensus       154 ~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~  231 (844)
T 3j0a_A          154 DFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS  231 (844)
T ss_dssp             EEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred             ECCCCcCCeeCHH-HcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence            9999988744444 56666  7899999998887754332 233333      388888888877666555544444444


Q ss_pred             cceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhc--CccCcEEEeecCCCCCCCCcccccCCccCE
Q 039739          238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN--NTKLRQLSLVNDSLGGPFQLPIHSHKRLGM  315 (628)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  315 (628)
                      ++..+.+. ......               .+..+.+.+.....+ ..  .++|+.|+++++.+.+..+..+..+++|+.
T Consensus       232 ~l~~L~l~-~~~~~~---------------~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  294 (844)
T 3j0a_A          232 QAFSLILA-HHIMGA---------------GFGFHNIKDPDQNTF-AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV  294 (844)
T ss_dssp             CBSEEECC-SSCCBC---------------SSSCSSSTTGGGTTT-TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred             cccceecc-cccccc---------------cccccccCCCChhhh-hccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence            55555552 111100               001111111111111 22  367888888888877766677788888888


Q ss_pred             EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCC
Q 039739          316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN  395 (628)
Q Consensus       316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  395 (628)
                      |++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++...+.++++|+.|++++|
T Consensus       295 L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             EEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETC
T ss_pred             EECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCC
Confidence            888888887555555544 788889999888888777778888889999999988886 666656677888999999988


Q ss_pred             ccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCcc-CccccCCCCcceEECCCCcCCCCCc
Q 039739          396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKI-PRWLGNLTRLQHIMMPKNHLEGPIP  474 (628)
Q Consensus       396 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~  474 (628)
                      .++..     ..+++|+.|++++|.+. .+|..   ..+++.|++++|.+.+.. +..+.++++|+.|++++|.+.+..+
T Consensus       373 ~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~  443 (844)
T 3j0a_A          373 ALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG  443 (844)
T ss_dssp             CSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred             CCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence            87642     23788899999988887 44432   467888999998887532 2345678899999999998875443


Q ss_pred             c-cccCCCCCCEEEccCCcCcCCC-----CCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch
Q 039739          475 V-EFCQLDWLQILDISDNNISGSL-----PSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD  547 (628)
Q Consensus       475 ~-~l~~l~~L~~L~l~~~~~~~~~-----~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  547 (628)
                      . .+..+++|+.|++++|.+....     +..+. +++|+.|++++|.+++ +++..+..+++|+.|++++|++++.++.
T Consensus       444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  522 (844)
T 3j0a_A          444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRLTVLSHN  522 (844)
T ss_dssp             SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-CCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred             ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc-cChhHccchhhhheeECCCCCCCccChh
Confidence            3 3566889999999999886332     22333 6888899999998874 4444488899999999999999877766


Q ss_pred             hhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739          548 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       548 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  591 (628)
                      .+.  ++|+.|++++|++++..|+.|   .+|+.+++++|+...
T Consensus       523 ~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          523 DLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             CCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred             hhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence            665  789999999999997777665   478899999988874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.1e-44  Score=396.75  Aligned_cols=513  Identities=21%  Similarity=0.199  Sum_probs=385.2

Q ss_pred             cEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcch-hhhhhccCCCccE
Q 039739           34 EYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSF-LQIIGESMPSLKY  112 (628)
Q Consensus        34 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~  112 (628)
                      +..+.++++++. .|.    ..+++++|++++|.+....+. .|.++++|++|++++|  .....+ +..+.+ +++|++
T Consensus         7 ~~~dcs~~~L~~-vP~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n--~~~~~i~~~~f~~-L~~L~~   77 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQ--YTPLTIDKEAFRN-LPNLRI   77 (844)
T ss_dssp             EEEEESCCCSSC-CCS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTT--CCCCEECTTTTSS-CTTCCE
T ss_pred             eEEEccCCCCCC-CCC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCC--CCccccCHHHhcC-CCCCCE
Confidence            456777777663 243    267889999998888755454 7888888888888887  344444 556666 888888


Q ss_pred             EeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchh--hhcCCCCCEEEccccccccccCCCCCCCCCcccEE
Q 039739          113 LSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC--LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL  190 (628)
Q Consensus       113 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L  190 (628)
                      |++++|.+..    +.+..|.++++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+...+.++++|++|
T Consensus        78 L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           78 LDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             EECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             EECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            8888887755    55567888888888888888887655544  77888888888888887643333357788888888


Q ss_pred             EcccCeeeeecCCCCcCCC--CcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCC------
Q 039739          191 YLSNNHFQIPISLEPFFNH--SRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH------  262 (628)
Q Consensus       191 ~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------  262 (628)
                      ++++|.+... ....+..+  ++|+.|+++.|.+.+..                            +..+..++      
T Consensus       154 ~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~----------------------------~~~~~~~~~~~~~~  204 (844)
T 3j0a_A          154 DFSSNQIFLV-CEHELEPLQGKTLSFFSLAANSLYSRV----------------------------SVDWGKCMNPFRNM  204 (844)
T ss_dssp             EEESSCCCCC-CSGGGHHHHHCSSCCCEECCSBSCCCC----------------------------CCCCCSSSCTTTTC
T ss_pred             ECCCCcCCee-CHHHcccccCCccceEECCCCcccccc----------------------------ccchhhcCCccccC
Confidence            8888877532 22344444  66777777776654432                            22222222      


Q ss_pred             CccEEEccCCcccCcCchhHHhcC--ccCcEEEeecCCC---------CCCCCccccc--CCccCEEEccCCcCCcccch
Q 039739          263 DLEYVDLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSL---------GGPFQLPIHS--HKRLGMLDISNNNFRGHIPV  329 (628)
Q Consensus       263 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~---------~~~~~~~l~~--~~~L~~L~l~~~~i~~~~~~  329 (628)
                      .|+.|++++|.+....+..+....  ..++.+.+..+..         .+.....+..  .++|+.|++++|.+.+..+.
T Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~  284 (844)
T 3j0a_A          205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR  284 (844)
T ss_dssp             CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred             ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence            478888888877666665554332  4566777653322         1111222333  37899999999998855555


Q ss_pred             hhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCC
Q 039739          330 EIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLT  409 (628)
Q Consensus       330 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  409 (628)
                      .+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+....+..+++|+.|++++|.+.......+..++
T Consensus       285 ~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  362 (844)
T 3j0a_A          285 VFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE  362 (844)
T ss_dssp             CSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred             hhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence            554 4899999999999999888888999999999999999997 55555566799999999999999887777888999


Q ss_pred             CCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCc-ccccCCCCCCEEEc
Q 039739          410 NLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDI  488 (628)
Q Consensus       410 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  488 (628)
                      +|++|++++|.+++     +..+++|+.|++++|.+. .++..   ..+++.|++++|.+.+... ..+..+++|+.|++
T Consensus       363 ~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L  433 (844)
T 3j0a_A          363 KLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL  433 (844)
T ss_dssp             CCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred             CCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence            99999999998873     233789999999999987 44432   5789999999999986433 23568999999999


Q ss_pred             cCCcCcCCCCC--CCCCCcccEEecCCCcCcCC----CCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCC
Q 039739          489 SDNNISGSLPS--CFHPLSVEQVHLSKNMLHGQ----LKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH  562 (628)
Q Consensus       489 ~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  562 (628)
                      ++|++.+..+.  ....++|+.|++++|.+...    .....+..+++|+.|+|++|++++.++..|..+++|+.|+|++
T Consensus       434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  513 (844)
T 3j0a_A          434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS  513 (844)
T ss_dssp             ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred             CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence            99999865443  22378999999999998632    2233478899999999999999998999999999999999999


Q ss_pred             CcCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739          563 NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       563 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~  601 (628)
                      |++++..+..+.  ++|+.|++++|++++.+|+.+.+++
T Consensus       514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~  550 (844)
T 3j0a_A          514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS  550 (844)
T ss_dssp             CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred             CCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence            999965555555  8999999999999999999887766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-43  Score=377.18  Aligned_cols=496  Identities=20%  Similarity=0.219  Sum_probs=305.7

Q ss_pred             CCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccc
Q 039739            5 PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLE   84 (628)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   84 (628)
                      +++++|++++|.++++  .+..|..+++|++|++++|.+++..+..+.. +++|++|++++|.+....+ ..|.++++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  103 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLAL-GAFSGLSSLQ  103 (570)
T ss_dssp             SSCCEEECCSCCCCEE--CTTTTTTCSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECT-TTTTTCTTCC
T ss_pred             ccccEEEccCCccCcc--ChhHhhCCCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCCccCH-hhhcCccccc
Confidence            4699999999999883  4567999999999999999998776778888 9999999999999876544 4899999999


Q ss_pred             eeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCC--
Q 039739           85 HLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSL--  162 (628)
Q Consensus        85 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--  162 (628)
                      +|+++++  .+.......++. +++|++|++++|.+..  +.+| ..+.++++|++|++++|.+....+..+..+++|  
T Consensus       104 ~L~L~~n--~l~~l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  177 (570)
T 2z63_A          104 KLVAVET--NLASLENFPIGH-LKTLKELNVAHNLIQS--FKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (570)
T ss_dssp             EEECTTS--CCCCSTTCSCTT-CTTCCEEECCSSCCCC--CCCC-GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred             ccccccc--ccccCCCccccc-cccccEEecCCCccce--ecCh-hhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence            9999999  444433334777 9999999999998843  1134 589999999999999999998778888888888  


Q ss_pred             --CEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739          163 --RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS  240 (628)
Q Consensus       163 --~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  240 (628)
                        +++++++|.+. .++...+..+ +|+.|++++|..........+..+..++...+....+...           ..++
T Consensus       178 ~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-----------~~l~  244 (570)
T 2z63_A          178 LNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-----------GNLE  244 (570)
T ss_dssp             CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-----------SSCE
T ss_pred             hhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-----------hhhh
Confidence              89999999998 4555466655 8999999988543211122344555555554432211100           0000


Q ss_pred             eeeccCCCCCCcccccccccCC--CccEEEccCC-cccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEE
Q 039739          241 RLSLSSGYGDGFIFPKFLYHQH--DLEYVDLSHI-KMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD  317 (628)
Q Consensus       241 ~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  317 (628)
                      .+.           ...+..+.  .++.+++.++ .+.+..+..+ ..+++|++|+++++.+.. .+..+..+ +|++|+
T Consensus       245 ~~~-----------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~  310 (570)
T 2z63_A          245 KFD-----------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLE  310 (570)
T ss_dssp             ECC-----------TTTTGGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEE
T ss_pred             hcc-----------hhhhccccccchhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEe
Confidence            000           00111111  2344444444 3333333332 344555555555554432 22333333 555555


Q ss_pred             ccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCcc
Q 039739          318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL  397 (628)
Q Consensus       318 l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  397 (628)
                      +++|.+. .+|..   .+++|+.|++.+|.+.+..+.  ..+++|+.|++++                         |.+
T Consensus       311 l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~-------------------------n~l  359 (570)
T 2z63_A          311 LVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR-------------------------NGL  359 (570)
T ss_dssp             EESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS-------------------------SCC
T ss_pred             eccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcC-------------------------Ccc
Confidence            5555444 33331   234455555554444432221  3344444444444                         444


Q ss_pred             CCcc--cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCc
Q 039739          398 EGHM--FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIP  474 (628)
Q Consensus       398 ~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~  474 (628)
                      +...  +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+
T Consensus       360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  438 (570)
T 2z63_A          360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  438 (570)
T ss_dssp             BEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence            3321  2233344555555555554442222 24455555555555555443322 344555555555555555554455


Q ss_pred             ccccCCCCCCEEEccCCcCc-CCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCC
Q 039739          475 VEFCQLDWLQILDISDNNIS-GSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGL  552 (628)
Q Consensus       475 ~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  552 (628)
                      ..+..+++|++|++++|.+. +..|..+. +++|+.|++++|++.+..+.. +..+++|+.|++++|++++.++..+..+
T Consensus       439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh-hhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence            55555555555555555554 23333332 555666666666664444444 7788899999999999988877888899


Q ss_pred             CCCcEEECCCCcCCccCC
Q 039739          553 SQLSHLILGHNNLEGEVP  570 (628)
Q Consensus       553 ~~L~~L~l~~~~i~~~~~  570 (628)
                      ++|+.|++++|++++..|
T Consensus       518 ~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          518 TSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             cCCcEEEecCCcccCCCc
Confidence            999999999999886544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3e-42  Score=368.17  Aligned_cols=467  Identities=18%  Similarity=0.176  Sum_probs=332.8

Q ss_pred             CccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCC
Q 039739           81 KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMT  160 (628)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~  160 (628)
                      ++|++|++++|  .+.+..+..+.. +++|++|++++|.+..    +++..|.++++|++|++++|.+.+..+..+..++
T Consensus        26 ~~L~~L~Ls~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFN--KITYIGHGDLRA-CANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSS--CCCEECSSTTSS-CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             CCccEEECcCC--ccCccChhhhhc-CCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence            45566666655  344433444555 6666666666665544    4445566666666666666666655555566666


Q ss_pred             CCCEEEcccccccc-ccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccc
Q 039739          161 SLRILDVSSNQLTG-SISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL  239 (628)
Q Consensus       161 ~L~~L~l~~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  239 (628)
                      +|++|++++|.+.+ ..+. .+..+++|++|++++|...+.++...+..+++|++|++++|.+.+               
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------  162 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---------------  162 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---------------
T ss_pred             CCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---------------
Confidence            66666666666652 1223 466666667777666664334444556666666666666554432               


Q ss_pred             eeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCC---CcccccCCccCEE
Q 039739          240 SRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF---QLPIHSHKRLGML  316 (628)
Q Consensus       240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L  316 (628)
                                   ..|..+..+++|++|+++.+... ..+..++..+++|++|+++++.+.+..   ......++.|+.|
T Consensus       163 -------------~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          163 -------------YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             -------------ECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             -------------cChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence                         13344556677777777777664 556666667888888888888877632   1223457889999


Q ss_pred             EccCCcCCcccchhhh---hhCCCccEEEcccccCCCc------ccccccCCCCccEEECcCCcccCccc----hhhhcC
Q 039739          317 DISNNNFRGHIPVEIG---DVLPSLFSLNISMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIP----EHLVVG  383 (628)
Q Consensus       317 ~l~~~~i~~~~~~~~~---~~~~~L~~L~L~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~  383 (628)
                      +++++.+.+..+..+.   ..+++++.+++.+|.+.+.      ....+..+++|+.+.+.++.+.....    ..++..
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence            9999887755544433   2367899999999876542      12235677899999998887652211    111233


Q ss_pred             CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc---ccccCCCcccEEEccCCcCCCccC--ccccCCCC
Q 039739          384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP---QSLSKCFVLEGLFLNNNSLSGKIP--RWLGNLTR  458 (628)
Q Consensus       384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~  458 (628)
                      .++|++|++++|.+.......+..+++|++|++++|.+.+..|   ..+..+++|++|++++|.+.+..+  ..+..+++
T Consensus       309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence            6789999999999875443344579999999999999986653   346788999999999999975432  45888999


Q ss_pred             cceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCC
Q 039739          459 LQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY  538 (628)
Q Consensus       459 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  538 (628)
                      |++|++++|.+. ..|..+..+++|++|++++|++.. .+... +++|+.|++++|++++..     ..+++|+.|++++
T Consensus       389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~  460 (549)
T 2z81_A          389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-PQTLEVLDVSNNNLDSFS-----LFLPRLQELYISR  460 (549)
T ss_dssp             CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCS
T ss_pred             CCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-cCCceEEECCCCChhhhc-----ccCChhcEEECCC
Confidence            999999999998 677788899999999999999874 33322 579999999999997532     4678999999999


Q ss_pred             cccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739          539 NRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       539 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip  594 (628)
                      |+++ .+|. ...+++|+.|++++|++++..|+.+..+++|+.|++++|++.+..|
T Consensus       461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9998 4555 4678999999999999998888889999999999999999998777

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.2e-41  Score=360.23  Aligned_cols=496  Identities=18%  Similarity=0.169  Sum_probs=337.9

Q ss_pred             CCCCCEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCcc
Q 039739            4 FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSL   83 (628)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L   83 (628)
                      |+...+.+++++.++.   +|..+.  ++|++|++++|.+++..+..+.. +++|++|++++|.+....+ ..|.++++|
T Consensus         4 C~~~~~c~~~~~~l~~---ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L   76 (549)
T 2z81_A            4 CDASGVCDGRSRSFTS---IPSGLT--AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEG-DAFYSLGSL   76 (549)
T ss_dssp             ECTTSEEECTTSCCSS---CCSCCC--TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred             CCCCceEECCCCcccc---ccccCC--CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccCh-hhccccccC
Confidence            4556677888888876   454443  78999999999998777778888 9999999999998886544 478999999


Q ss_pred             ceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCc-hhhhcCCCC
Q 039739           84 EHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSL  162 (628)
Q Consensus        84 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L  162 (628)
                      ++|++++|  .+.+..+..++. +++|++|++++|.+..  ...+ ..+.++++|++|++++|...+.++ ..+..+++|
T Consensus        77 ~~L~Ls~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           77 EHLDLSDN--HLSSLSSSWFGP-LSSLKYLNLMGNPYQT--LGVT-SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             CEEECTTS--CCCSCCHHHHTT-CTTCCEEECTTCCCSS--SCSS-CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CEEECCCC--ccCccCHHHhcc-CCCCcEEECCCCcccc--cchh-hhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence            99999999  666666666877 9999999999998843  0123 468889999999999998443444 678889999


Q ss_pred             CEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceee
Q 039739          163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRL  242 (628)
Q Consensus       163 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  242 (628)
                      ++|++++|.+.+..+. .+..+++|++|+++++... ..+...+..+++|++|++++|.+.+....              
T Consensus       151 ~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------  214 (549)
T 2z81_A          151 NELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS--------------  214 (549)
T ss_dssp             EEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC--------------
T ss_pred             CeeeccCCcccccChh-hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc--------------
Confidence            9999999998866666 7888999999999988754 22222234578888888888876432100              


Q ss_pred             eccCCCCCCcccccccccCCCccEEEccCCcccCcCchhH---HhcCccCcEEEeecCCCCCCC------CcccccCCcc
Q 039739          243 SLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSLGGPF------QLPIHSHKRL  313 (628)
Q Consensus       243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------~~~l~~~~~L  313 (628)
                                 .......++.|+.|+++++.+.+..+..+   +..+++|+.+++++|.+.+..      ...+..++++
T Consensus       215 -----------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L  283 (549)
T 2z81_A          215 -----------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV  283 (549)
T ss_dssp             -----------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred             -----------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence                       00112346778888888887765544433   245677888888777654321      1123345555


Q ss_pred             CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739          314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS  393 (628)
Q Consensus       314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  393 (628)
                      +.+++.++.+.....      +              ..++..+...++|+.|++++|.+. .+|..++.++++|++|+++
T Consensus       284 ~~L~l~~~~i~~~~~------~--------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          284 ETVTIRRLHIPQFYL------F--------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             CEEEEESCBCSCGGG------S--------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhh------c--------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence            555555554331100      0              001111222345666666666654 5555554456666666666


Q ss_pred             CCccCCccc---ccccCCCCCcEEEccCccCcCccc--ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739          394 NNSLEGHMF---SRNFNLTNLRWLQLEGNHFVGEIP--QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH  468 (628)
Q Consensus       394 ~~~l~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  468 (628)
                      +|.+.+..+   ..++.+++|++|++++|.+++..+  ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence            666654332   224556677777777776654321  34666777777777777666 456666667777777777777


Q ss_pred             CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739          469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW  548 (628)
Q Consensus       469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  548 (628)
                      +.. .+..+  .++|++|++++|++++..   ..+++|+.|++++|+++ .+|.  ...+++|+.|++++|++++.++..
T Consensus       422 l~~-l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          422 IRV-VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             CSC-CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred             ccc-ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHH
Confidence            663 22222  257788888888776532   24667888888888875 5665  356889999999999999888888


Q ss_pred             hcCCCCCcEEECCCCcCCccCC
Q 039739          549 VDGLSQLSHLILGHNNLEGEVP  570 (628)
Q Consensus       549 ~~~l~~L~~L~l~~~~i~~~~~  570 (628)
                      +..+++|+.|++++|++.+..|
T Consensus       493 ~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          493 FDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCcccCEEEecCCCccCCCc
Confidence            9999999999999999886554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-40  Score=349.20  Aligned_cols=456  Identities=17%  Similarity=0.168  Sum_probs=300.5

Q ss_pred             ceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCC
Q 039739           59 KNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHL  138 (628)
Q Consensus        59 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L  138 (628)
                      ++|+++++.++ .+|. .+.  ++|++|++++|  .+.+..+..+.. +++|++|++++|.+..    +.++.|.++++|
T Consensus         3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n--~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L   71 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQN--YISELWTSDILS-LSKLRILIISHNRIQY----LDISVFKFNQEL   71 (520)
T ss_dssp             CEEECTTSCCS-SCCC-SCC--TTCSEEECCSS--CCCCCCHHHHTT-CTTCCEEECCSSCCCE----EEGGGGTTCTTC
T ss_pred             ceEecCCCCcc-cccc-ccc--ccccEEECCCC--cccccChhhccc-cccccEEecCCCccCC----cChHHhhcccCC
Confidence            57888888887 4554 343  78899999888  566666667777 8888888888888865    655678888888


Q ss_pred             cEEEccCCcccccCchhhhcCCCCCEEEcccccccc-ccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcc--cEE
Q 039739          139 QVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL--KSF  215 (628)
Q Consensus       139 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L  215 (628)
                      ++|++++|.+. .+|..  .+++|++|++++|.+.+ .+|. .++.+++|++|++++|.+..    ..+..+++|  +.+
T Consensus        72 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           72 EYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKV  143 (520)
T ss_dssp             CEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEE
T ss_pred             CEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEE
Confidence            88888888887 45555  78888888888888874 3444 68888888888888887753    345566666  888


Q ss_pred             eccCCcc--cccccccccCccCcccceeeeccCCCCCCcccccccccCC-CccEEEccCCcccCcCchhHHhcCccCcEE
Q 039739          216 YADNNEI--NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLRQL  292 (628)
Q Consensus       216 ~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  292 (628)
                      ++++|.+  .+.                            .|..+..+. ....++++++.+.+.++...+..+++|+.+
T Consensus       144 ~l~~n~l~~~~~----------------------------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L  195 (520)
T 2z7x_B          144 LLVLGETYGEKE----------------------------DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS  195 (520)
T ss_dssp             EEEECTTTTSSC----------------------------CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred             Eeeccccccccc----------------------------ccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence            8877765  222                            122222222 122345555555544454444556666666


Q ss_pred             EeecCC-------CCCCCCcccccCCccCEEEccCCcCCcccchhhhh--hCCCccEEEcccccCCCcccccc-----cC
Q 039739          293 SLVNDS-------LGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGD--VLPSLFSLNISMNALDGSIPSSF-----GN  358 (628)
Q Consensus       293 ~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~-----~~  358 (628)
                      ++++|.       +.+.. ..+..+++|+.|+++++.+.+..+..+..  ..++|+.|++++|.+.+.+|..+     ..
T Consensus       196 ~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~  274 (520)
T 2z7x_B          196 NIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS  274 (520)
T ss_dssp             CEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred             cccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence            666654       11111 14556677777777776665433322221  14578888888887777777766     67


Q ss_pred             CCCccEEECcCCcccCccchhhhcCC---ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739          359 MKFLQILDLSNNHLTGEIPEHLVVGC---VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL  435 (628)
Q Consensus       359 ~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  435 (628)
                      +++|+.++++++.+  .+|...+..+   .+|+.|++++|.+....  ....+++|++|++++|.+.+..|..+..+++|
T Consensus       275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  350 (520)
T 2z7x_B          275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL  350 (520)
T ss_dssp             CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred             CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence            77777777777766  4442211112   45777777777665422  12456677777777777766566666666777


Q ss_pred             cEEEccCCcCCC--ccCccccCCCCcceEECCCCcCCCCCcc-cccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739          436 EGLFLNNNSLSG--KIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS  512 (628)
Q Consensus       436 ~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  512 (628)
                      ++|++++|.+.+  ..+..+..+++|++|++++|.+.+..|. .+..+++|+.|++++|+++                  
T Consensus       351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~------------------  412 (520)
T 2z7x_B          351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT------------------  412 (520)
T ss_dssp             CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC------------------
T ss_pred             CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC------------------
Confidence            777777776654  3344566666666666666666653333 2555566666666666554                  


Q ss_pred             CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcc-ccCCCCCcEEECCCCcccc
Q 039739          513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~  591 (628)
                           +.++.. +.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++..
T Consensus       413 -----~~~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          413 -----DTIFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             -----GGGGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -----cchhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence                 333332 21  68888999998888 66776778899999999999888 56665 8888999999999999886


Q ss_pred             ccc
Q 039739          592 SIP  594 (628)
Q Consensus       592 ~ip  594 (628)
                      ..|
T Consensus       483 ~c~  485 (520)
T 2z7x_B          483 SCP  485 (520)
T ss_dssp             CHH
T ss_pred             cCC
Confidence            544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-40  Score=357.24  Aligned_cols=356  Identities=18%  Similarity=0.185  Sum_probs=295.1

Q ss_pred             CCCCcccccccccCCCccEEEccCCcccCc-----------------CchhHHh--cCccCcEEEeecCCCCCCCCcccc
Q 039739          248 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGE-----------------FPTWLLE--NNTKLRQLSLVNDSLGGPFQLPIH  308 (628)
Q Consensus       248 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~  308 (628)
                      +...+ +|..+.++++|++|++++|.+.+.                 +|..+ .  .+++|++|++++|.+.+..+..+.
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHh
Confidence            34445 788899999999999999998864                 77765 4  899999999999999988888999


Q ss_pred             cCCccCEEEccCCc-CCc-ccchhhhhh-----CCCccEEEcccccCCCcccc--cccCCCCccEEECcCCcccCccchh
Q 039739          309 SHKRLGMLDISNNN-FRG-HIPVEIGDV-----LPSLFSLNISMNALDGSIPS--SFGNMKFLQILDLSNNHLTGEIPEH  379 (628)
Q Consensus       309 ~~~~L~~L~l~~~~-i~~-~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~  379 (628)
                      .+++|++|++++|. +++ .+|..+...     +++|+.|++++|.++ .+|.  .+..+++|+.|++++|.+.+.+|  
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--  347 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--  347 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence            99999999999998 887 788877652     389999999999999 7887  89999999999999999886777  


Q ss_pred             hhcCCccccEEEccCCccCCcccccccCCCC-CcEEEccCccCcCcccccccCCC--cccEEEccCCcCCCccCcccc--
Q 039739          380 LVVGCVNLESLALSNNSLEGHMFSRNFNLTN-LRWLQLEGNHFVGEIPQSLSKCF--VLEGLFLNNNSLSGKIPRWLG--  454 (628)
Q Consensus       380 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~--  454 (628)
                      .+..+++|++|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+..++  +|++|++++|.+.+..|..+.  
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            4667899999999999887 55666788888 999999999988 6777776654  899999999999888888887  


Q ss_pred             -----CCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCC--------cccEEecCCCcCcCCCC
Q 039739          455 -----NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--------SVEQVHLSKNMLHGQLK  521 (628)
Q Consensus       455 -----~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~l~~n~~~~~~~  521 (628)
                           .+++|++|++++|.+....+..+..+++|+.|++++|+++...+..+...        +|+.|++++|+++ .++
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  504 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS  504 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred             ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence                 78899999999999985555556779999999999999984444444322        8999999999997 677


Q ss_pred             cccc-ccCCCccEEECCCcccCCccchhhcCCCCCcEEEC------CCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739          522 RGTF-FNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLIL------GHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       522 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l------~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip  594 (628)
                      .... ..+++|+.|++++|++++ +|..+..+++|+.|++      ++|++.+.+|..+.++++|++|++++|++ +.||
T Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence            6622 388999999999999996 7888999999999999      45778888999999999999999999999 5899


Q ss_pred             ccccc-cc-ccccccCCcccc
Q 039739          595 LCLDN-TT-LHESYNNSSSLD  613 (628)
Q Consensus       595 ~~~~~-~~-~~~~~~~~~~~~  613 (628)
                      ..+.. ++ ++..+|+...++
T Consensus       583 ~~~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          583 EKITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             SCCCTTCCEEECCSCTTCEEE
T ss_pred             HhHhCcCCEEECcCCCCcccc
Confidence            86543 33 445555555444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-40  Score=357.14  Aligned_cols=455  Identities=16%  Similarity=0.186  Sum_probs=218.2

Q ss_pred             CCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccc------------cccCCCccccCccceeecccchhhcCcc
Q 039739           31 TNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNG------------LVRGQGFPHFKSLEHLDMEGALIALNTS   98 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~   98 (628)
                      .+++.|+|+++.+.+..+.++.+ +++|++|++++|.+..            .+|.   ..+..|+ ++++.+  ...+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~---~~~~~l~-l~l~~~--~l~~~  153 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD---EQKQKMR-MHYQKT--FVDYD  153 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH---HHHHHHH-THHHHH--HTCCC
T ss_pred             CCEEEEEecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchH---HHHHHHH-hhHHHh--hhccC
Confidence            36777788777777777777777 7788888887775411            1110   1134455 555555  44444


Q ss_pred             hhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEcc--CCcccccCchhhhcCCCCCEEEccccccccc-
Q 039739           99 FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIA--YNDLRGSLPWCLANMTSLRILDVSSNQLTGS-  175 (628)
Q Consensus        99 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-  175 (628)
                      .+..+...+..+..+++....+.          ......++.+.+.  .|.+++ +|..+.++++|++|++++|.+.+. 
T Consensus       154 ~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~  222 (636)
T 4eco_A          154 PREDFSDLIKDCINSDPQQKSIK----------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN  222 (636)
T ss_dssp             GGGGSCHHHHHHHHHCTTSCCCC----------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGG
T ss_pred             chhhHHHHHHHHhhcCccccccc----------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccc
Confidence            44444432333333333221110          0111222323332  466776 788888888899999988888753 


Q ss_pred             ----------------cCCCCCC--CCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcc
Q 039739          176 ----------------ISSSPLV--HLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF  237 (628)
Q Consensus       176 ----------------l~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  237 (628)
                                      +|. .+.  ++++|++|++++|.+.+.++ ..+.++++|++|++++|..               
T Consensus       223 ~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~---------------  285 (636)
T 4eco_A          223 ICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRG---------------  285 (636)
T ss_dssp             BSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTT---------------
T ss_pred             ccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCC---------------
Confidence                            666 566  77777777777776554333 3344444444444444430               


Q ss_pred             cceeeeccCCCCCCcccccccccCCCccEEEccCCcccC-cCchhHHh-----cCccCcEEEeecCCCCCCCCc--cccc
Q 039739          238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPTWLLE-----NNTKLRQLSLVNDSLGGPFQL--PIHS  309 (628)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~--~l~~  309 (628)
                                                          +.+ .+|..+..     .+++|++|++++|.++ ..+.  .+..
T Consensus       286 ------------------------------------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~  328 (636)
T 4eco_A          286 ------------------------------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK  328 (636)
T ss_dssp             ------------------------------------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred             ------------------------------------CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence                                                332 33333210     1133333333333333 2222  2333


Q ss_pred             CCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCC-ccEEECcCCcccCccchhhhc-CCccc
Q 039739          310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKF-LQILDLSNNHLTGEIPEHLVV-GCVNL  387 (628)
Q Consensus       310 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~~L  387 (628)
                      +++|++|++++|.+.+.+| .+.. +++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.. .+++|
T Consensus       329 l~~L~~L~L~~N~l~g~ip-~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  404 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM  404 (636)
T ss_dssp             CTTCCEEECCSCCCEEECC-CCEE-EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred             CCCCCEEeCcCCcCccchh-hhCC-CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence            3333333333333333333 2211 333333333333333 33333333333 444444443333 23321110 01133


Q ss_pred             cEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccccc-------CCCcccEEEccCCcCCCccCccccCCCCcc
Q 039739          388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS-------KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ  460 (628)
Q Consensus       388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  460 (628)
                      ++|++++|.+                        .+..|..+.       .+++|++|++++|.+....+..+..+++|+
T Consensus       405 ~~L~Ls~N~l------------------------~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          405 SAIDFSYNEI------------------------GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             EEEECCSSCT------------------------TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             CEEECcCCcC------------------------CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            3333333333                        333333232       333344444444433322222233334444


Q ss_pred             eEECCCCcCCCCCcccccC-------CCCCCEEEccCCcCcCCCCCCC--CCCcccEEecCCCcCcCCCCccccccCCCc
Q 039739          461 HIMMPKNHLEGPIPVEFCQ-------LDWLQILDISDNNISGSLPSCF--HPLSVEQVHLSKNMLHGQLKRGTFFNSYSL  531 (628)
Q Consensus       461 ~L~l~~~~~~~~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  531 (628)
                      +|++++|.+....+..+..       +++|+.|++++|+++......+  .+++|+.|++++|++.+ +|.. +..+++|
T Consensus       461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L  538 (636)
T 4eco_A          461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-PLNSSTL  538 (636)
T ss_dssp             EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCSSC
T ss_pred             EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChh-hhcCCCC
Confidence            4444444443111111111       1144444444444442111222  34445555555555543 4444 5556667


Q ss_pred             cEEEC------CCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739          532 VTLDL------SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       532 ~~L~l------~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      +.|++      ++|++.+.+|..+..+++|+.|++++|+++ .+|..+.  ++|++|++++|++.
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence            77766      456666677777777777777777777774 6676655  67777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.1e-39  Score=349.46  Aligned_cols=391  Identities=18%  Similarity=0.235  Sum_probs=238.8

Q ss_pred             CcccccCchhhhcCCCCCEEEcccccccc-----------------ccCCCCCC--CCCcccEEEcccCeeeeecCCCCc
Q 039739          146 NDLRGSLPWCLANMTSLRILDVSSNQLTG-----------------SISSSPLV--HLTSIEELYLSNNHFQIPISLEPF  206 (628)
Q Consensus       146 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~l~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l  206 (628)
                      |.+.+ +|..+.++++|++|++++|.+.+                 .+|. .++  ++++|++|++++|.+.+.++ ..+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l  511 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLP-DFL  511 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCC-GGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccCh-HHH
Confidence            66665 78888888888888888888875                 2666 565  78888888888887665544 557


Q ss_pred             CCCCcccEEeccCCc-ccc-cccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCch-hHH
Q 039739          207 FNHSRLKSFYADNNE-INA-EITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPT-WLL  283 (628)
Q Consensus       207 ~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~  283 (628)
                      .++++|+.|++++|. +.+ .++..+.         .            ++..+..+++|+.|++++|.+. .+|. ..+
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~---------~------------L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l  569 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWT---------R------------LADDEDTGPKIQIFYMGYNNLE-EFPASASL  569 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHH---------H------------HHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHH---------h------------hhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence            777777777777775 543 2222110         0            0012234457777777777777 6666 123


Q ss_pred             hcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCC-ccEEEcccccCCCcccccccCCCC-
Q 039739          284 ENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS-LFSLNISMNALDGSIPSSFGNMKF-  361 (628)
Q Consensus       284 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~~~~~~-  361 (628)
                      ..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.+. .+|..+..++. 
T Consensus       570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~  644 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVY  644 (876)
T ss_dssp             TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred             hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccC
Confidence            67777777777777776 444 6677777777777777776 66666554 556 777777777776 55665555443 


Q ss_pred             -ccEEECcCCcccCccchhh--h--cCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccC-----
Q 039739          362 -LQILDLSNNHLTGEIPEHL--V--VGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSK-----  431 (628)
Q Consensus       362 -L~~L~l~~~~~~~~~~~~~--~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----  431 (628)
                       |+.|++++|.+.+.++...  .  ..+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|..+..     
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~  723 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN  723 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence             7777777777654333211  0  12346666666666666433333345666666666666665 33332222     


Q ss_pred             ---CCcccEEEccCCcCCCccCcccc--CCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcc
Q 039739          432 ---CFVLEGLFLNNNSLSGKIPRWLG--NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV  506 (628)
Q Consensus       432 ---~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  506 (628)
                         +++|++|++++|.+. .+|..+.  .+++|+.|++++|.+.+ .|..+..+++|+.|++++|+              
T Consensus       724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--------------  787 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--------------  787 (876)
T ss_dssp             CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------------
T ss_pred             ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC--------------
Confidence               225666666666555 4444444  56666666666666654 45555566666666665554              


Q ss_pred             cEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739          507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN  586 (628)
Q Consensus       507 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  586 (628)
                         ++++|.+.+.+|.. +..+++|+.|++++|.+ +.+|..+.  ++|+.|++++|++....+..+.....+..+.+.+
T Consensus       788 ---~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~  860 (876)
T 4ecn_A          788 ---DAEGNRILRQWPTG-ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY  860 (876)
T ss_dssp             ---CTTCCBCCCCCCTT-GGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEEC
T ss_pred             ---CcccccccccChHH-HhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecC
Confidence               23445555555555 66677777777777777 35555544  4677777777777655555554444444455555


Q ss_pred             Cccc
Q 039739          587 NSLH  590 (628)
Q Consensus       587 ~~~~  590 (628)
                      ++..
T Consensus       861 n~~~  864 (876)
T 4ecn_A          861 DKTQ  864 (876)
T ss_dssp             CTTS
T ss_pred             CCcc
Confidence            5444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.7e-38  Score=343.31  Aligned_cols=532  Identities=21%  Similarity=0.206  Sum_probs=345.8

Q ss_pred             EEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeec
Q 039739            9 TLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDM   88 (628)
Q Consensus         9 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   88 (628)
                      +.+.++.+++.   +|..+.  +++++|+|++|.++...+..|.. +++|++|+|++|.+.. ++.++|.++++|++|+|
T Consensus        35 ~~~c~~~~l~~---vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~L  107 (635)
T 4g8a_A           35 TYQCMELNFYK---IPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLIL  107 (635)
T ss_dssp             EEECTTSCCSS---CCSSSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCCcCc---cCCCCC--cCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEc
Confidence            45666655655   454443  47999999999998766677888 9999999999998875 44458999999999999


Q ss_pred             ccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccc-cCchhhhcCCCCCEEEc
Q 039739           89 EGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRG-SLPWCLANMTSLRILDV  167 (628)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l  167 (628)
                      ++|  .+....+..+.. +++|++|++++|.+..    ++...|.++++|++|++++|.+.. ..|..+..+++|++|++
T Consensus       108 s~N--~l~~l~~~~f~~-L~~L~~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          108 TGN--PIQSLALGAFSG-LSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             TTC--CCCEECGGGGTT-CTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             cCC--cCCCCCHHHhcC-CCCCCEEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence            998  555544556666 9999999999998876    776779999999999999999875 45788889999999999


Q ss_pred             cccccccccCCCCCCCCCcc----cEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeee
Q 039739          168 SSNQLTGSISSSPLVHLTSI----EELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLS  243 (628)
Q Consensus       168 ~~~~~~~~l~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  243 (628)
                      ++|++. .++...+..+.++    ..++++.+.+.. ++... .....++.+++.++..................+..+.
T Consensus       181 ~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~  257 (635)
T 4g8a_A          181 SSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  257 (635)
T ss_dssp             CSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred             cCcccc-ccccccccchhhhhhhhhhhhcccCcccc-cCccc-ccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence            999987 4443355554443    367888887763 23222 2334566677766543322211111111111111221


Q ss_pred             ccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCC---CCCcccccCCccCEEEccC
Q 039739          244 LSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG---PFQLPIHSHKRLGMLDISN  320 (628)
Q Consensus       244 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~  320 (628)
                      +......                     ..+. ......+.....+....+.......   .....+.....++.+.+.+
T Consensus       258 ~~~~~~~---------------------~~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  315 (635)
T 4g8a_A          258 LGEFRNE---------------------GNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS  315 (635)
T ss_dssp             EECCTTS---------------------CCCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred             ccccccc---------------------cccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence            1000000                     0000 0000111233333333333222111   1122334455666666666


Q ss_pred             CcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc
Q 039739          321 NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH  400 (628)
Q Consensus       321 ~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  400 (628)
                      +.+. .++. + .....++.|++.+|.+....+   ..++.|+.+++..+... ....  ...+++|+.++++.|.+...
T Consensus       316 ~~~~-~~~~-~-~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~--~~~l~~L~~L~ls~n~l~~~  386 (635)
T 4g8a_A          316 VTIE-RVKD-F-SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFS--EVDLPSLEFLDLSRNGLSFK  386 (635)
T ss_dssp             CEEE-ECGG-G-GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC-CBCC--CCBCTTCCEEECCSSCCBEE
T ss_pred             cccc-cccc-c-ccchhhhhhhcccccccCcCc---ccchhhhhcccccccCC-CCcc--cccccccccchhhccccccc
Confidence            6554 2221 1 124567777777776653322   23456777777766554 2222  22367777777777765432


Q ss_pred             --ccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCCCCcccc
Q 039739          401 --MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIPVEF  477 (628)
Q Consensus       401 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  477 (628)
                        .......+.+|+.+++..+... ..+..+..+++|+.+++..+..... ....+..+++++.++++.|.+....+..+
T Consensus       387 ~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          387 GCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             EECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             cccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence              2233345677777777777665 3444566777788887777655433 23456777788888888887776677777


Q ss_pred             cCCCCCCEEEccCCcCcC-CCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCC
Q 039739          478 CQLDWLQILDISDNNISG-SLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL  555 (628)
Q Consensus       478 ~~l~~L~~L~l~~~~~~~-~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  555 (628)
                      ..+++|+.|++++|.+.. ..|..+. +++|+.|++++|++.+..+ ..|.++++|+.|+|++|++++..+..|..+++|
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence            778888888888876443 3444443 6778888888888864444 448889999999999999998888889999999


Q ss_pred             cEEECCCCcCCccCCccccCC-CCCcEEECCCCccc
Q 039739          556 SHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNSLH  590 (628)
Q Consensus       556 ~~L~l~~~~i~~~~~~~l~~l-~~L~~L~l~~~~~~  590 (628)
                      +.|++++|++++..|+.|..+ ++|++|++++|++.
T Consensus       545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999999998888888888 68999999998886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=338.86  Aligned_cols=455  Identities=18%  Similarity=0.147  Sum_probs=339.2

Q ss_pred             CEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceee
Q 039739            8 NTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLD   87 (628)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   87 (628)
                      ++|+++++.++.   +|..+.  ++|++|++++|.+++..+..+.. +++|++|++++|.+....+. .|.++++|++|+
T Consensus         3 ~~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~   75 (520)
T 2z7x_B            3 FLVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDIS-VFKFNQELEYLD   75 (520)
T ss_dssp             CEEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred             ceEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence            578999998877   444444  88999999999988777778888 99999999999988865554 788999999999


Q ss_pred             cccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCC--CEE
Q 039739           88 MEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSL--RIL  165 (628)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L--~~L  165 (628)
                      +++|  .+. .++..  . +++|++|++++|.+..  ..+| ..+.++++|++|++++|.+.+   ..+..+++|  ++|
T Consensus        76 Ls~N--~l~-~lp~~--~-l~~L~~L~L~~N~l~~--~~~p-~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           76 LSHN--KLV-KISCH--P-TVNLKHLDLSFNAFDA--LPIC-KEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV  143 (520)
T ss_dssp             CCSS--CCC-EEECC--C-CCCCSEEECCSSCCSS--CCCC-GGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred             cCCC--cee-ecCcc--c-cCCccEEeccCCcccc--ccch-hhhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence            9998  443 34444  4 8999999999988843  0133 578899999999999998875   456777777  999


Q ss_pred             Ecccccc--ccccCCCCCCCCC-cccEEEcccCeeeeecCCCCcCCCCcccEEeccCCc-------ccccccccccCccC
Q 039739          166 DVSSNQL--TGSISSSPLVHLT-SIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNE-------INAEITQSHSLTAP  235 (628)
Q Consensus       166 ~l~~~~~--~~~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~  235 (628)
                      ++++|.+  .+..|. .+..+. ....+++++|.+.+..+...+..+++|+.+++++|.       +.+..+    ....
T Consensus       144 ~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~l~~  218 (520)
T 2z7x_B          144 LLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA----KLQT  218 (520)
T ss_dssp             EEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH----GGGG
T ss_pred             Eeecccccccccccc-cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh----hhcc
Confidence            9999988  545554 555554 233566777777666666677788888888888875       333222    1222


Q ss_pred             cccceeeeccCCCCCCccccccc---ccCCCccEEEccCCcccCcCchhHH----hcCccCcEEEeecCCCCCCCC-ccc
Q 039739          236 NFQLSRLSLSSGYGDGFIFPKFL---YHQHDLEYVDLSHIKMNGEFPTWLL----ENNTKLRQLSLVNDSLGGPFQ-LPI  307 (628)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~-~~l  307 (628)
                      ..+++.|.+ ..+......+..+   ...++|++|++++|.+.+.+|..++    ..+++|+.++++++.+  ..+ ..+
T Consensus       219 l~~L~~L~l-~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~  295 (520)
T 2z7x_B          219 NPKLSNLTL-NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI  295 (520)
T ss_dssp             CTTCCEEEE-EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred             ccchhhccc-cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence            346777777 3333222111111   1246899999999988877777653    5778888889988877  222 222


Q ss_pred             ccC---CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccch--hhhc
Q 039739          308 HSH---KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE--HLVV  382 (628)
Q Consensus       308 ~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~  382 (628)
                      ...   .+|+.|++++|.+.. .+  +...+++|+.|++++|.+.+..|..+..+++|+.|++++|++. .++.  ..+.
T Consensus       296 ~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~  371 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTT  371 (520)
T ss_dssp             HHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHT
T ss_pred             hcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHh
Confidence            222   579999999998763 22  1134789999999999999878888999999999999999987 4332  3355


Q ss_pred             CCccccEEEccCCccCC-cccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcce
Q 039739          383 GCVNLESLALSNNSLEG-HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQH  461 (628)
Q Consensus       383 ~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  461 (628)
                      .+++|++|++++|.+.+ .....+..+++|++|++++|.+++..+..+.  ++|++|++++|.+. .+|..+..+++|++
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~  448 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQE  448 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred             hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence            68999999999999987 3334577889999999999999876666553  79999999999998 77777779999999


Q ss_pred             EECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739          462 IMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS  496 (628)
Q Consensus       462 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  496 (628)
                      |++++|.+....+..+..+++|++|++++|++...
T Consensus       449 L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            99999999954444588999999999999998753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.9e-37  Score=332.83  Aligned_cols=525  Identities=19%  Similarity=0.146  Sum_probs=384.0

Q ss_pred             hhhhcccCCC---CcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcch
Q 039739           23 ATQELHNFTN---LEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSF   99 (628)
Q Consensus        23 ~~~~~~~~~~---L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   99 (628)
                      +|+....|..   -++.+.++-+++ ..|..+   .+++++|+|++|.++. ++...|.++++|++|+|++|  .+.+..
T Consensus        20 ~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~l---p~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N--~i~~i~   92 (635)
T 4g8a_A           20 IPESWEPCVEVVPNITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC--EIQTIE   92 (635)
T ss_dssp             -----CCSEEEETTTEEECTTSCCS-SCCSSS---CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC--CCCEEC
T ss_pred             CCCCCCCccccCCCCEEECCCCCcC-ccCCCC---CcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCC--cCCCcC
Confidence            4555555532   234566665555 334433   3589999999999985 44458999999999999999  566555


Q ss_pred             hhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEcccccccc-ccCC
Q 039739          100 LQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTG-SISS  178 (628)
Q Consensus       100 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~  178 (628)
                      +.++.. +++|++|++++|.+..    ++...|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+ .+|.
T Consensus        93 ~~~f~~-L~~L~~L~Ls~N~l~~----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  167 (635)
T 4g8a_A           93 DGAYQS-LSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  167 (635)
T ss_dssp             TTTTTT-CTTCCEEECTTCCCCE----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             hhHhcC-CCCCCEEEccCCcCCC----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence            667777 9999999999999977    887789999999999999999997666779999999999999999863 2344


Q ss_pred             CCCCCCCcccEEEcccCeeeeecCCCCcCCCCcc----cEEeccCCcccccccccccCccCcccceeeeccCCCCCCccc
Q 039739          179 SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL----KSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIF  254 (628)
Q Consensus       179 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  254 (628)
                       .+..+++|++|++++|.+... ....+..+.++    ..++++.+.+...                             
T Consensus       168 -~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i-----------------------------  216 (635)
T 4g8a_A          168 -YFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFI-----------------------------  216 (635)
T ss_dssp             -GGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEE-----------------------------
T ss_pred             -hhccchhhhhhcccCcccccc-ccccccchhhhhhhhhhhhcccCccccc-----------------------------
Confidence             678899999999999988743 33344443333    2445555443221                             


Q ss_pred             ccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCC------CCCCCcccccCCccCEEEccCCcCCc---
Q 039739          255 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL------GGPFQLPIHSHKRLGMLDISNNNFRG---  325 (628)
Q Consensus       255 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~l~~~~i~~---  325 (628)
                      +........++.+++.++..........+..+..++...+.....      .......+.....+....+..+....   
T Consensus       217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  296 (635)
T 4g8a_A          217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD  296 (635)
T ss_dssp             CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred             CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence            111222334556666665444334444456677776665543222      12222334445555555554432221   


Q ss_pred             ccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccc
Q 039739          326 HIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRN  405 (628)
Q Consensus       326 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  405 (628)
                      ..... .....+++.+.+.++.+....  .+..+.+++.|++.++.+. .++..   .++.|+.+.+..+....  ....
T Consensus       297 ~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~~--~~~~  367 (635)
T 4g8a_A          297 GIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGN--AFSE  367 (635)
T ss_dssp             ECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSCC--BCCC
T ss_pred             chhhh-hhhhccccccccccccccccc--ccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCCC--Cccc
Confidence            12222 234678999999888766432  3566789999999999876 44432   36889999999887654  2334


Q ss_pred             cCCCCCcEEEccCccCcC--cccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCc-ccccCCCC
Q 039739          406 FNLTNLRWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDW  482 (628)
Q Consensus       406 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~  482 (628)
                      ..+++|+.|++++|.+..  ..+..+..+.+|+++++..+... ..+..+..+++|+.+++.++......+ ..+..+++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~  446 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  446 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccc
Confidence            478999999999998753  34556677889999999998876 445568889999999999887664443 45889999


Q ss_pred             CCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECC
Q 039739          483 LQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILG  561 (628)
Q Consensus       483 L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  561 (628)
                      ++.++++.|.+....+..+. .+.++.|++++|.....+.+..+..+++|+.|++++|++++.+|..|+.+++|+.|+|+
T Consensus       447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls  526 (635)
T 4g8a_A          447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  526 (635)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence            99999999999877777665 88999999999987655555569999999999999999998889999999999999999


Q ss_pred             CCcCCccCCccccCCCCCcEEECCCCccccccccccccc
Q 039739          562 HNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNT  600 (628)
Q Consensus       562 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~  600 (628)
                      +|++++..|..|..+++|++|++++|++++..|+.++.+
T Consensus       527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence            999998788899999999999999999998888877654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-37  Score=338.97  Aligned_cols=353  Identities=18%  Similarity=0.182  Sum_probs=290.1

Q ss_pred             cccccccCCCccEEEccCCcccC-----------------cCchhH-HhcCccCcEEEeecCCCCCCCCcccccCCccCE
Q 039739          254 FPKFLYHQHDLEYVDLSHIKMNG-----------------EFPTWL-LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGM  315 (628)
Q Consensus       254 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  315 (628)
                      +|..+..+++|+.|++++|.+.+                 .+|..+ +..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78889999999999999999886                 277775 348999999999999998888888999999999


Q ss_pred             EEccCCc-CCc-ccchhhhh------hCCCccEEEcccccCCCcccc--cccCCCCccEEECcCCcccCccchhhhcCCc
Q 039739          316 LDISNNN-FRG-HIPVEIGD------VLPSLFSLNISMNALDGSIPS--SFGNMKFLQILDLSNNHLTGEIPEHLVVGCV  385 (628)
Q Consensus       316 L~l~~~~-i~~-~~~~~~~~------~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  385 (628)
                      |++++|. +.+ .+|..+..      .+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.+. .+|  .+..++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~  595 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV  595 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence            9999998 876 68876654      2359999999999999 7887  8999999999999999998 787  466789


Q ss_pred             cccEEEccCCccCCcccccccCCCC-CcEEEccCccCcCcccccccCCCc--ccEEEccCCcCCCccCcc---cc--CCC
Q 039739          386 NLESLALSNNSLEGHMFSRNFNLTN-LRWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSLSGKIPRW---LG--NLT  457 (628)
Q Consensus       386 ~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~---~~--~~~  457 (628)
                      +|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+...+.  |++|++++|.+.+..|..   +.  .++
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            9999999999988 56667888888 999999999988 67877776654  999999999987655432   22  345


Q ss_pred             CcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCC--------cccEEecCCCcCcCCCCccccc--c
Q 039739          458 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--------SVEQVHLSKNMLHGQLKRGTFF--N  527 (628)
Q Consensus       458 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~l~~n~~~~~~~~~~~~--~  527 (628)
                      +|+.|++++|.+....+..+..+++|+.|++++|++....+..+...        +|+.|++++|++. .+|.. +.  .
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~-l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD-FRATT  751 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG-GSTTT
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH-hhhcc
Confidence            89999999999985444445689999999999999984444444422        8999999999997 67766 54  8


Q ss_pred             CCCccEEECCCcccCCccchhhcCCCCCcEEECCC------CcCCccCCccccCCCCCcEEECCCCcccccccccccc-c
Q 039739          528 SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGH------NNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN-T  600 (628)
Q Consensus       528 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~-~  600 (628)
                      +++|+.|++++|.+++ +|..+..+++|+.|++++      |++.+.+|..|.++++|++|+|++|++ +.||..+.+ +
T Consensus       752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L  829 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQL  829 (876)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSS
T ss_pred             CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCC
Confidence            8999999999999996 688889999999999976      778888999999999999999999999 689987653 4


Q ss_pred             c-ccccccCCccccccc
Q 039739          601 T-LHESYNNSSSLDKQF  616 (628)
Q Consensus       601 ~-~~~~~~~~~~~~~~~  616 (628)
                      + ++..+|+..+++...
T Consensus       830 ~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          830 YILDIADNPNISIDVTS  846 (876)
T ss_dssp             CEEECCSCTTCEEECGG
T ss_pred             CEEECCCCCCCccChHH
Confidence            4 555666666665443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-37  Score=331.31  Aligned_cols=461  Identities=19%  Similarity=0.174  Sum_probs=256.6

Q ss_pred             CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccC
Q 039739           55 FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCS  134 (628)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  134 (628)
                      |...++++++++.++. +|. .+.  ++|++|++++|  .+.+..+..+.. +++|++|++++|.+..    ++++.|.+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N--~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~----~~~~~~~~   98 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPK-DLP--PRTKALSLSQN--SISELRMPDISF-LSELRVLRLSHNRIRS----LDFHVFLF   98 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCT-TSC--TTCCEEECCSS--CCCCCCGGGTTT-CTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred             cCCCcEEEcCCCCCcc-CCC-CCC--CCcCEEECCCC--CccccChhhhcc-CCCccEEECCCCCCCc----CCHHHhCC
Confidence            5556788888887774 454 232  67888888887  555555566666 8888888888887755    55567778


Q ss_pred             CCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCC-CCCCCCCcccEEEcccCeeeeecCCCCcCCCCcc-
Q 039739          135 LVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL-  212 (628)
Q Consensus       135 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-  212 (628)
                      +++|++|++++|.+. .+|..  .+++|++|++++|.+. .++. ..++++++|++|++++|.+..    ..+..+++| 
T Consensus        99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~  170 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLH  170 (562)
T ss_dssp             CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSC
T ss_pred             CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc----Cchhhhhhce
Confidence            888888888888777 45554  6788888888888776 3331 267778888888888877653    233444444 


Q ss_pred             -cEEeccCCcc--cccccccccCccCcccceeeeccCCCCCCcccccccccCC-CccEEEccCCcccCcCchhHHhcCcc
Q 039739          213 -KSFYADNNEI--NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTK  288 (628)
Q Consensus       213 -~~L~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~  288 (628)
                       +++++++|.+  .+..                            |..+..+. ..-.++++.+.+....+...+..+++
T Consensus       171 L~~L~L~~n~l~~~~~~----------------------------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~  222 (562)
T 3a79_B          171 LSCILLDLVSYHIKGGE----------------------------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH  222 (562)
T ss_dssp             EEEEEEEESSCCCCSSS----------------------------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred             eeEEEeecccccccccC----------------------------cccccccCcceEEEEecCccchhhhhhhcccccce
Confidence             7777777665  2221                            12222211 01123444444443333333344455


Q ss_pred             CcEEEeecCCCCC----CCCcccccCCccCEEEccCCcCCcccchhhhh--hCCCccEEEcccccCCCcccccc-----c
Q 039739          289 LRQLSLVNDSLGG----PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGD--VLPSLFSLNISMNALDGSIPSSF-----G  357 (628)
Q Consensus       289 L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~-----~  357 (628)
                      |+.++++++...-    .....+...+.++.+++.++.+.+.....+..  ..++|+.|++++|.+.+.+|..+     .
T Consensus       223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~  302 (562)
T 3a79_B          223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET  302 (562)
T ss_dssp             EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred             EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence            5555555442100    00112334455555555554443221111111  12466677777766665555544     4


Q ss_pred             CCCCccEEECcCCcccCccchhhhcC---CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCc
Q 039739          358 NMKFLQILDLSNNHLTGEIPEHLVVG---CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFV  434 (628)
Q Consensus       358 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  434 (628)
                      .++.|+.+++..+.+  .+|......   ..+|++|++++|.+....  ....+++|++|++++|.+.+..|..+..+++
T Consensus       303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  378 (562)
T 3a79_B          303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR  378 (562)
T ss_dssp             SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred             cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC
Confidence            444444444444443  223111111   134556666555543211  1134455555555555555444445555555


Q ss_pred             ccEEEccCCcCCCc--cCccccCCCCcceEECCCCcCCCCCc-ccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEec
Q 039739          435 LEGLFLNNNSLSGK--IPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHL  511 (628)
Q Consensus       435 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  511 (628)
                      |++|++++|.+.+.  .+..+.++++|++|++++|.+.+..| ..+..+                       ++|+.|++
T Consensus       379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l-----------------------~~L~~L~l  435 (562)
T 3a79_B          379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----------------------ESILVLNL  435 (562)
T ss_dssp             CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC-----------------------TTCCEEEC
T ss_pred             CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc-----------------------ccCCEEEC
Confidence            55555555554431  12334444455555555544443122 224444                       44555555


Q ss_pred             CCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcc-ccCCCCCcEEECCCCccc
Q 039739          512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       512 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~  590 (628)
                      ++|++++.++.. +.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.
T Consensus       436 ~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          436 SSNMLTGSVFRC-LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CSSCCCGGGGSS-CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCCCCCcchhhh-hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence            555554434333 21  57888888888887 56666668888888888888888 56666 888888888888888887


Q ss_pred             cccc
Q 039739          591 GSIP  594 (628)
Q Consensus       591 ~~ip  594 (628)
                      ...|
T Consensus       511 c~c~  514 (562)
T 3a79_B          511 CTCP  514 (562)
T ss_dssp             CCHH
T ss_pred             CCcc
Confidence            6554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.5e-37  Score=326.00  Aligned_cols=177  Identities=19%  Similarity=0.187  Sum_probs=102.5

Q ss_pred             CCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCc--ccccccCCCcccE
Q 039739          360 KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE--IPQSLSKCFVLEG  437 (628)
Q Consensus       360 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~  437 (628)
                      .+|+.|++++|.+. ....  ...+++|++|++++|.+++..+..+..+++|++|++++|.+.+.  .|..+..+++|++
T Consensus       331 ~~L~~L~l~~n~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          331 MNIKMLSISDTPFI-HMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCCSEEEEESSCCC-CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             CcceEEEccCCCcc-cccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence            34666666666543 2211  13466677777777776665566666777777777777777642  3455677777788


Q ss_pred             EEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739          438 LFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML  516 (628)
Q Consensus       438 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  516 (628)
                      |++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.  ++|+.|++++|+++...+..+..++|+.|++++|++
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred             EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence            8887777776333 3467778888888888877654444332  577777777777663222222333344444444443


Q ss_pred             cCCCCccccccCCCccEEECCCcccC
Q 039739          517 HGQLKRGTFFNSYSLVTLDLSYNRLN  542 (628)
Q Consensus       517 ~~~~~~~~~~~~~~L~~L~l~~~~~~  542 (628)
                      + .++...+..+++|+.|++++|.+.
T Consensus       486 ~-~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          486 K-SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             C-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             C-CCCHHHHhcCCCCCEEEecCCCcC
Confidence            3 233333444444555555554444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-34  Score=301.05  Aligned_cols=378  Identities=19%  Similarity=0.218  Sum_probs=215.9

Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEE
Q 039739          136 VHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSF  215 (628)
Q Consensus       136 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  215 (628)
                      ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.. .....+.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEE
Confidence            5666666666666655566666666666666666666545554456666666666666666543 223445556666666


Q ss_pred             eccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEee
Q 039739          216 YADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLV  295 (628)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  295 (628)
                      ++++|.+.+....                          ...+..+++|++|++++|.+.+..|..++..+++|++|+++
T Consensus       109 ~L~~n~l~~~~~~--------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A          109 TLTQCNLDGAVLS--------------------------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             ECTTSCCBTHHHH--------------------------SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             eCCCCCCCccccC--------------------------cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            6655544321110                          01244556666666666666555455444555666666665


Q ss_pred             cCCCCCCCCcccccC--CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCccc
Q 039739          296 NDSLGGPFQLPIHSH--KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLT  373 (628)
Q Consensus       296 ~~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  373 (628)
                      +|.+.+..+..+..+  ..++.++++++.+.+..+..+..                 .....+..+++|+.|++++|.+.
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l~  225 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGFK  225 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCCC
T ss_pred             CCcccccChhhhhccccccccccccccCcccccchhhccc-----------------cccccccccceeeeEecCCCccc
Confidence            555554444333332  34555555555443211111000                 00111334566777777777665


Q ss_pred             Cccchhhhc--CCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccccc--CCCcccEEEccCCcCCCcc
Q 039739          374 GEIPEHLVV--GCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS--KCFVLEGLFLNNNSLSGKI  449 (628)
Q Consensus       374 ~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~  449 (628)
                      +..+..+..  ..++|+.|++++|...+....              .+.+.+..+..+.  ..++|++|++++|.+.+..
T Consensus       226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence            444433322  125677777776654332111              0011111111111  2345666666666666555


Q ss_pred             CccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCC
Q 039739          450 PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSY  529 (628)
Q Consensus       450 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  529 (628)
                      +..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.                        .+++..+..++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~  347 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG------------------------SIDSRMFENLD  347 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------------------EECGGGGTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC------------------------CcChhHhcCcc
Confidence            566666666666666666666555555666666666666666554                        22233367778


Q ss_pred             CccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccc
Q 039739          530 SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL  595 (628)
Q Consensus       530 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~  595 (628)
                      +|+.|++++|++++..|..+..+++|++|++++|++++..++.+..+++|++|++++|++.+.+|.
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            888888888888877778888888888888888888855555678888888888888888877763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-33  Score=293.47  Aligned_cols=393  Identities=19%  Similarity=0.172  Sum_probs=229.9

Q ss_pred             CEEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceee
Q 039739            8 NTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLD   87 (628)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   87 (628)
                      +.++.+++.++.   +|. +  .++|++|++++|.+++..+..+.. +++|++|++++|.+...++...|.++++|++|+
T Consensus        13 ~~~~c~~~~l~~---lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A           13 YNAICINRGLHQ---VPE-L--PAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             TEEECCSSCCSS---CCC-C--CTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             cccCcCCCCccc---CCC-C--CCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEe
Confidence            456777776666   333 2  267888888888887766777777 888888888888776566555778888888888


Q ss_pred             cccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccc-cccccCCCCCcEEEccCCcccccCchh-hhcCCCCCEE
Q 039739           88 MEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRIL-DRGLCSLVHLQVLNIAYNDLRGSLPWC-LANMTSLRIL  165 (628)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L  165 (628)
                      +++|  .+.+..+..++. +++|++|++++|.+...   .+ ...+..+++|++|++++|.+.+..|.. +..+++|++|
T Consensus        86 Ls~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  159 (455)
T 3v47_A           86 LDYN--QFLQLETGAFNG-LANLEVLTLTQCNLDGA---VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL  159 (455)
T ss_dssp             CTTC--TTCEECTTTTTT-CTTCCEEECTTSCCBTH---HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred             CCCC--ccCccChhhccC-cccCCEEeCCCCCCCcc---ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence            8887  555555666666 77777777777766320   11 123667777777777777776555554 6677777777


Q ss_pred             EccccccccccCCCCCCCC--CcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeee
Q 039739          166 DVSSNQLTGSISSSPLVHL--TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLS  243 (628)
Q Consensus       166 ~l~~~~~~~~l~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  243 (628)
                      ++++|.+.+..+. .+..+  .+|+.+++++|.+.....                         .               
T Consensus       160 ~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~-------------------------~---------------  198 (455)
T 3v47_A          160 DLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNE-------------------------Y---------------  198 (455)
T ss_dssp             ECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCST-------------------------T---------------
T ss_pred             eCCCCcccccChh-hhhccccccccccccccCcccccch-------------------------h---------------
Confidence            7777776633333 44443  455666666554431100                         0               


Q ss_pred             ccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhc--CccCcEEEeecCCCCCCCCcccccCCccCEEEccCC
Q 039739          244 LSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN--NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNN  321 (628)
Q Consensus       244 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  321 (628)
                           .........+..+++|++|++++|.+.+..+..+...  .++|+.|+++++...+...              ...
T Consensus       199 -----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~  259 (455)
T 3v47_A          199 -----WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHT  259 (455)
T ss_dssp             -----CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCC
T ss_pred             -----hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chh
Confidence                 0000011223355678888888888776666655332  2566666666654332110              001


Q ss_pred             cCCcccchhhhh-hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCc
Q 039739          322 NFRGHIPVEIGD-VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGH  400 (628)
Q Consensus       322 ~i~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  400 (628)
                      .+.+..+..+.. ..++|+.|++++|.+.+..|..+..+++|+                         +|++++|.+.+.
T Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-------------------------~L~Ls~n~l~~~  314 (455)
T 3v47_A          260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE-------------------------QLTLAQNEINKI  314 (455)
T ss_dssp             SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC-------------------------EEECTTSCCCEE
T ss_pred             hhccCcccccccccccCceEEEecCccccccchhhcccCCCCC-------------------------EEECCCCccccc
Confidence            111000001100 123455555555554444444444444444                         444444444444


Q ss_pred             ccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCC
Q 039739          401 MFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQL  480 (628)
Q Consensus       401 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  480 (628)
                      .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            44444555666666666666554455556666666666666666665556666667777777777777765555556677


Q ss_pred             CCCCEEEccCCcCcCCCC
Q 039739          481 DWLQILDISDNNISGSLP  498 (628)
Q Consensus       481 ~~L~~L~l~~~~~~~~~~  498 (628)
                      ++|+.|++++|++....|
T Consensus       395 ~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             CcccEEEccCCCcccCCC
Confidence            777777777777765554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.3e-34  Score=294.42  Aligned_cols=298  Identities=24%  Similarity=0.339  Sum_probs=174.6

Q ss_pred             CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739          262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL  341 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  341 (628)
                      ++|++|++++|.+.+ ++.    ..++|++|++++|.+++ .+ .+..+++|++|++++|.+. .+|..    .++|+.|
T Consensus       111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence            456666666666542 221    11567777777776665 33 4667777777777777766 34432    3477777


Q ss_pred             EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739          342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF  421 (628)
Q Consensus       342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  421 (628)
                      ++++|.+.+ +| .+..+++|+.|++++|.+. .++..    .++|++|++++|.+.. .+ .+..+++|++|++++|.+
T Consensus       179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred             ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcC
Confidence            777777774 44 4677777777777777776 34431    3577777777777763 22 366777777888777777


Q ss_pred             cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739          422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  501 (628)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  501 (628)
                      .+ +|..   +++|++|++++|.+.+ ++..   .++|++|++++|.+.+. +.   ..++|+.|++++|++.+. +.  
T Consensus       250 ~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~~--  314 (454)
T 1jl5_A          250 KT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-CD--  314 (454)
T ss_dssp             SS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-CC--
T ss_pred             Cc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-cC--
Confidence            63 3332   3677778887777764 3332   36777888887777642 11   125777888887777642 21  


Q ss_pred             CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc--cCCccccCC---
Q 039739          502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKL---  576 (628)
Q Consensus       502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l---  576 (628)
                      .+.+|+.|++++|++.+ ++..    +++|+.|++++|++++ +|.   .+++|+.|++++|++++  .+|..+.++   
T Consensus       315 ~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n  385 (454)
T 1jl5_A          315 LPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN  385 (454)
T ss_dssp             CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred             CcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc
Confidence            13577788888887753 4443    4678888888887774 444   46778888888888876  567777666   


Q ss_pred             ----------CCCcEEECCCCcccc--ccccccccccccc
Q 039739          577 ----------NQLQLLDLSNNSLHG--SIPLCLDNTTLHE  604 (628)
Q Consensus       577 ----------~~L~~L~l~~~~~~~--~ip~~~~~~~~~~  604 (628)
                                ++|++|++++|++++  .||+.++.+++..
T Consensus       386 ~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~  425 (454)
T 1jl5_A          386 SHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNS  425 (454)
T ss_dssp             C---------------------------------------
T ss_pred             ccccccccccCcCCEEECCCCcCCccccchhhHhheeCcC
Confidence                      889999999999987  8898888877543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-33  Score=290.51  Aligned_cols=427  Identities=23%  Similarity=0.277  Sum_probs=217.3

Q ss_pred             cCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCC
Q 039739           29 NFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMP  108 (628)
Q Consensus        29 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  108 (628)
                      +..+|++|++++|.+ +..+..+++ +++|++|++++|.+.+..|. .+.++++|+.+++++|.              ..
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~--------------~~   71 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCL--------------DR   71 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHH--------------HH
T ss_pred             ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCc-ccccchhcchhhhhhhh--------------cc
Confidence            357899999999988 678888888 99999999999988877776 78888888888888772              24


Q ss_pred             CccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCccc
Q 039739          109 SLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE  188 (628)
Q Consensus       109 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~  188 (628)
                      ++++|++++|.+..    ++.    -.++|++|++++|.+.+ +|..   +++|++|++++|.+. .++.  +  .++|+
T Consensus        72 ~l~~L~l~~~~l~~----lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~--~--~~~L~  134 (454)
T 1jl5_A           72 QAHELELNNLGLSS----LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLE  134 (454)
T ss_dssp             TCSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCC
T ss_pred             CCCEEEecCCcccc----CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC--C--CCCCC
Confidence            68899999988755    543    23688899999888885 5543   478888888888876 4443  1  15788


Q ss_pred             EEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEE
Q 039739          189 ELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVD  268 (628)
Q Consensus       189 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  268 (628)
                      +|++++|.+.+ ++  .+..+++|++|++++|.+.+                             +|..   .++|++|+
T Consensus       135 ~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-----------------------------lp~~---~~~L~~L~  179 (454)
T 1jl5_A          135 YLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-----------------------------LPDL---PPSLEFIA  179 (454)
T ss_dssp             EEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-----------------------------CCCC---CTTCCEEE
T ss_pred             EEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-----------------------------cCCC---cccccEEE
Confidence            88888887763 33  36667777777776665431                             1111   12455555


Q ss_pred             ccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccC
Q 039739          269 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNAL  348 (628)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~  348 (628)
                      +++|.+.+ +|                          .+..+++|+.|++++|.+. .+|..    .++|+.|++++|.+
T Consensus       180 L~~n~l~~-l~--------------------------~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          180 AGNNQLEE-LP--------------------------ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNIL  227 (454)
T ss_dssp             CCSSCCSS-CC--------------------------CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCC
T ss_pred             CcCCcCCc-Cc--------------------------cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcC
Confidence            55555442 22                          2444555555555555554 23321    24666666666666


Q ss_pred             CCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccc
Q 039739          349 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQS  428 (628)
Q Consensus       349 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  428 (628)
                      . .+|. +..+++|+.|++++|++. .++.    .+++|++|++++|.+.+.. .   .+++|+.|++++|.+.+ ++. 
T Consensus       228 ~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~-~---~~~~L~~L~ls~N~l~~-l~~-  294 (454)
T 1jl5_A          228 E-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSG-LSE-  294 (454)
T ss_dssp             S-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSE-ESC-
T ss_pred             C-cccc-cCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccccC-c---ccCcCCEEECcCCccCc-ccC-
Confidence            5 4442 566666777777766665 3443    1466777777776665421 1   23667777777776653 221 


Q ss_pred             ccCCCcccEEEccCCcCCCccCccccCC-CCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCccc
Q 039739          429 LSKCFVLEGLFLNNNSLSGKIPRWLGNL-TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVE  507 (628)
Q Consensus       429 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~  507 (628)
                        -.++|++|++++|.+.+     +..+ ++|++|++++|.+.+ .|..   +++|+.|++++|+++. .|.  .+++|+
T Consensus       295 --~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~--~l~~L~  360 (454)
T 1jl5_A          295 --LPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE--LPQNLK  360 (454)
T ss_dssp             --CCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--CCTTCC
T ss_pred             --cCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc--hhhhcc
Confidence              12567777777776653     1122 477777777777764 3332   4677778887777763 444  456777


Q ss_pred             EEecCCCcCcC--CCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc--cCCccccCCCCCcEEE
Q 039739          508 QVHLSKNMLHG--QLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKLNQLQLLD  583 (628)
Q Consensus       508 ~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~  583 (628)
                      .|++++|++++  .+|..       +..|.  .|.+.+.+|..   +++|+.|++++|++++  .+|.      +++.|.
T Consensus       361 ~L~L~~N~l~~l~~ip~~-------l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~  422 (454)
T 1jl5_A          361 QLHVEYNPLREFPDIPES-------VEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLR  422 (454)
T ss_dssp             EEECCSSCCSSCCCCCTT-------CCEEE--CCC---------------------------------------------
T ss_pred             EEECCCCCCCcCCCChHH-------HHhhh--hcccccccccc---cCcCCEEECCCCcCCccccchh------hHhhee
Confidence            77777777765  34332       33332  34455455542   4789999999999985  4453      457778


Q ss_pred             CCCCcccccccccccccc
Q 039739          584 LSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       584 l~~~~~~~~ip~~~~~~~  601 (628)
                      +.+|.+.+.+|...+...
T Consensus       423 ~~~~~~~~~~~~~~~~~~  440 (454)
T 1jl5_A          423 MNSERVVDPYEFAHETTD  440 (454)
T ss_dssp             ------------------
T ss_pred             CcCcccCCccccCHHHhh
Confidence            899998887777766643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.6e-32  Score=279.83  Aligned_cols=281  Identities=25%  Similarity=0.294  Sum_probs=186.6

Q ss_pred             cccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCC
Q 039739          258 LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS  337 (628)
Q Consensus       258 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~  337 (628)
                      +..+++|++|++++|.+.+. +.  +..+++|++|++++|.+.+.  ..+..+++|++|++++ .+. ..+. +. .+++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~-~~~~-~~-~l~~  178 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVT-DLKP-LA-NLTT  178 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCC-CCGG-GT-TCTT
T ss_pred             hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-ccc-Cchh-hc-cCCC
Confidence            55678888888888887643 33  46888888888888877653  2467788888888863 333 2222 33 3678


Q ss_pred             ccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEcc
Q 039739          338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE  417 (628)
Q Consensus       338 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  417 (628)
                      |+.|++++|.+...  ..+..+++|+.|++++|.+.+..+   +..+++|++|++++|.+.+.  ..+..+++|+.|+++
T Consensus       179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  251 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence            88888888877643  236677788888888877763323   33477788888887777653  345667777777777


Q ss_pred             CccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCC
Q 039739          418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL  497 (628)
Q Consensus       418 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  497 (628)
                      +|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++.+..
T Consensus       252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred             CCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence            777765433  6677777777777777764433  6677777777777777765443  667777777777777776544


Q ss_pred             CCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          498 PSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       498 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      + ...+++|+.|++++|++.+. +  .+..+++|+.|++++|.+++..|  +..+++|+.|++++|+++
T Consensus       326 ~-~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          326 P-VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             G-GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             h-hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            3 23356666666666666432 1  25566666666666666665544  566666666666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.7e-31  Score=275.43  Aligned_cols=346  Identities=24%  Similarity=0.282  Sum_probs=185.4

Q ss_pred             CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739          107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS  186 (628)
Q Consensus       107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~  186 (628)
                      ++++++|++.++.+..    ++  .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++.  +..+++
T Consensus        45 l~~l~~L~l~~~~i~~----l~--~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~  113 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP--LANLTN  113 (466)
T ss_dssp             HHTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             hccccEEecCCCCCcc----Cc--chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc-cChh--hcCCCC
Confidence            3445555555554433    32  244555555555555555532 22 555555555555555554 2332  555555


Q ss_pred             ccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccE
Q 039739          187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEY  266 (628)
Q Consensus       187 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  266 (628)
                      |++|++++|.+...   ..+..+++|++|++++|.+.+                             + ..+..+++|+.
T Consensus       114 L~~L~L~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~-----------------------------~-~~~~~l~~L~~  160 (466)
T 1o6v_A          114 LTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD-----------------------------I-SALSGLTSLQQ  160 (466)
T ss_dssp             CCEEECCSSCCCCC---GGGTTCTTCSEEEEEEEEECC-----------------------------C-GGGTTCTTCSE
T ss_pred             CCEEECCCCCCCCC---hHHcCCCCCCEEECCCCccCC-----------------------------C-hhhccCCcccE
Confidence            55555555544321   114444444444444443221                             0 01334455555


Q ss_pred             EEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccc
Q 039739          267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN  346 (628)
Q Consensus       267 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~  346 (628)
                      |++++ .+.. .+.  +..+++|+.|+++++.+.+.  ..+..                         +++|+.|++++|
T Consensus       161 L~l~~-~~~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~-------------------------l~~L~~L~l~~n  209 (466)
T 1o6v_A          161 LSFGN-QVTD-LKP--LANLTTLERLDISSNKVSDI--SVLAK-------------------------LTNLESLIATNN  209 (466)
T ss_dssp             EEEEE-SCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGGG-------------------------CTTCSEEECCSS
T ss_pred             eecCC-cccC-chh--hccCCCCCEEECcCCcCCCC--hhhcc-------------------------CCCCCEEEecCC
Confidence            55542 2221 111  23445555555555444332  12333                         455555555555


Q ss_pred             cCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc
Q 039739          347 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP  426 (628)
Q Consensus       347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  426 (628)
                      .+.+..+  +..+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+
T Consensus       210 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~  282 (466)
T 1o6v_A          210 QISDITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP  282 (466)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccc--ccccCCCCEEECCCCCcc-cchh--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence            5543322  344555555555555554 2221  3345566666666665554322  4556666666666666654322


Q ss_pred             ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcc
Q 039739          427 QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV  506 (628)
Q Consensus       427 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  506 (628)
                        +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++.+. +....+++|
T Consensus       283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L  355 (466)
T 1o6v_A          283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNI  355 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTC
T ss_pred             --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCC
Confidence              5566666666666666654332  5666677777777776665444  55667777777777766643 333346677


Q ss_pred             cEEecCCCcCcCCCCccccccCCCccEEECCCcccCCc
Q 039739          507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN  544 (628)
Q Consensus       507 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  544 (628)
                      +.|++++|++.+..+   +..+++|+.|++++|.+++.
T Consensus       356 ~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECC
T ss_pred             CEEeCCCCccCccch---hhcCCCCCEEeccCCcccCC
Confidence            777777777755544   67789999999999999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=2.6e-31  Score=273.89  Aligned_cols=360  Identities=21%  Similarity=0.193  Sum_probs=198.7

Q ss_pred             hhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCC
Q 039739          102 IIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL  181 (628)
Q Consensus       102 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l  181 (628)
                      .+++ +++|++|+++++.+..    ++  .+..+++|++|++++|.+.+. +  +..+++|++|++++|.+. .++   +
T Consensus        37 ~~~~-l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~  102 (457)
T 3bz5_A           37 SEEQ-LATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---V  102 (457)
T ss_dssp             EHHH-HTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---C
T ss_pred             ChhH-cCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---c
Confidence            4455 6777777777776644    43  466777777777777776643 3  666777777777777765 232   6


Q ss_pred             CCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccC
Q 039739          182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQ  261 (628)
Q Consensus       182 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  261 (628)
                      +.+++|++|++++|.+.. +   .+..+++|++|++++|.+.+.                               .+..+
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~l  147 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI-------------------------------DVSHN  147 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC-------------------------------CCTTC
T ss_pred             CCCCcCCEEECCCCcCCe-e---cCCCCCcCCEEECCCCcccee-------------------------------ccccC
Confidence            666777777777776653 1   255566666666665543210                               12344


Q ss_pred             CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739          262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL  341 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  341 (628)
                      ++|+.|++++|...+.+                           .+..+++|+.|++++|.+. .++  + ..+++|+.|
T Consensus       148 ~~L~~L~l~~n~~~~~~---------------------------~~~~l~~L~~L~ls~n~l~-~l~--l-~~l~~L~~L  196 (457)
T 3bz5_A          148 TQLTELDCHLNKKITKL---------------------------DVTPQTQLTTLDCSFNKIT-ELD--V-SQNKLLNRL  196 (457)
T ss_dssp             TTCCEEECTTCSCCCCC---------------------------CCTTCTTCCEEECCSSCCC-CCC--C-TTCTTCCEE
T ss_pred             CcCCEEECCCCCccccc---------------------------ccccCCcCCEEECCCCccc-eec--c-ccCCCCCEE
Confidence            45555555555332222                           2334444444444444444 222  1 124455555


Q ss_pred             EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739          342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF  421 (628)
Q Consensus       342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  421 (628)
                      ++++|.+++.   .+..+++|+.|++++|++. .+|   +..+++|+.|++++|.+++..   +..+++|+.|+++++  
T Consensus       197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--  264 (457)
T 3bz5_A          197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--  264 (457)
T ss_dssp             ECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--
T ss_pred             ECcCCcCCee---ccccCCCCCEEECcCCccc-ccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--
Confidence            5555555432   2445555555555555554 233   233555555555555555432   234455555554443  


Q ss_pred             cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739          422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  501 (628)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  501 (628)
                                  +|++|++++|...+..|  +..+++|+.|++++|...+..|.   ..++|+.|++++|          
T Consensus       265 ------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------  317 (457)
T 3bz5_A          265 ------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------  317 (457)
T ss_dssp             ------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------
T ss_pred             ------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc----------
Confidence                        23344445554443333  34456666666666655444432   3344555554444          


Q ss_pred             CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcE
Q 039739          502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQL  581 (628)
Q Consensus       502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  581 (628)
                        ++|+.|++++|++++ +  . +..+++|+.|++++|++++        ++.|..|++++|.+.+.     .++.+|+.
T Consensus       318 --~~L~~L~L~~N~l~~-l--~-l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~  378 (457)
T 3bz5_A          318 --PKLVYLYLNNTELTE-L--D-VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK  378 (457)
T ss_dssp             --TTCCEEECTTCCCSC-C--C-CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred             --ccCCEEECCCCcccc-c--c-cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence              356666666666654 2  1 6667777777777777764        24555566777776643     24456677


Q ss_pred             EECCCCcccccccccccc
Q 039739          582 LDLSNNSLHGSIPLCLDN  599 (628)
Q Consensus       582 L~l~~~~~~~~ip~~~~~  599 (628)
                      +++++|+++|.||+.+..
T Consensus       379 l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          379 ETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             BCCBTTBEEEECCTTCBC
T ss_pred             cccccCcEEEEcChhHhc
Confidence            788888888888776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=5.8e-31  Score=275.39  Aligned_cols=301  Identities=20%  Similarity=0.183  Sum_probs=177.7

Q ss_pred             CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739          262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL  341 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  341 (628)
                      +.++.|+++++.+.+..+..+ ..+++|++|+++++.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            456677777766654333333 56666666666666666655556666666666666666665 4444333336666666


Q ss_pred             EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739          342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF  421 (628)
Q Consensus       342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  421 (628)
                      ++++|.+.+..+..+..+++|+.|++++|.+. .+....+.++++|++|++++|.++......+..+++|+.|++++|.+
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            66666666555556666666666666666665 33333444566666666666666655555555666666666666666


Q ss_pred             cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739          422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  501 (628)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  501 (628)
                      .+..+..+..+++|++|++++|...+..+.......+|++|++++|.+....+..+..+++|+.|++++|++.+..+..+
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            65555556666666666666665554544444444566666666666664444456666666666666666654444333


Q ss_pred             C-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          502 H-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       502 ~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      . +++|+.|++++|++.+..+. .+..+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccccCCEEECCCCccceECHH-HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            2 55556666666555432222 2555556666666666555544455555555666666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1e-29  Score=254.40  Aligned_cols=308  Identities=21%  Similarity=0.287  Sum_probs=253.9

Q ss_pred             ccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCC
Q 039739          257 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLP  336 (628)
Q Consensus       257 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  336 (628)
                      .+..+++|++|+++++.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++ .+. .++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCT
T ss_pred             cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCC
Confidence            3457788999999998886 3443  3688999999999998886543  889999999999999887 454 343 489


Q ss_pred             CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEc
Q 039739          337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL  416 (628)
Q Consensus       337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  416 (628)
                      +|+.|++++|.+.+. +. +..+++|+.|++++|......+.  +..+++|++|++++|.+.....  +..+++|++|++
T Consensus       111 ~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l  184 (347)
T 4fmz_A          111 NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL  184 (347)
T ss_dssp             TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred             cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence            999999999998854 33 88899999999999966545444  5678999999999998876443  778999999999


Q ss_pred             cCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739          417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS  496 (628)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  496 (628)
                      ++|.+.+..+  +..+++|+++++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+ 
T Consensus       185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-  257 (347)
T 4fmz_A          185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-  257 (347)
T ss_dssp             TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred             cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-
Confidence            9999875433  7889999999999999875443  8889999999999999986544  8899999999999999885 


Q ss_pred             CCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCC
Q 039739          497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL  576 (628)
Q Consensus       497 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l  576 (628)
                      .+....+++|+.|++++|++.+ ++  .+..+++|+.|++++|.+++..+..++.+++|+.|++++|++++..|  +..+
T Consensus       258 ~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l  332 (347)
T 4fmz_A          258 INAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL  332 (347)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred             ChhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence            3445558899999999999864 32  37889999999999999998888999999999999999999995545  8899


Q ss_pred             CCCcEEECCCCccc
Q 039739          577 NQLQLLDLSNNSLH  590 (628)
Q Consensus       577 ~~L~~L~l~~~~~~  590 (628)
                      ++|++|++++|+++
T Consensus       333 ~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          333 SKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEESSSCC---
T ss_pred             hccceeehhhhccc
Confidence            99999999999986

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=4e-30  Score=265.02  Aligned_cols=358  Identities=18%  Similarity=0.177  Sum_probs=255.1

Q ss_pred             CccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchh
Q 039739           76 GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWC  155 (628)
Q Consensus        76 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  155 (628)
                      .+.++++|++|+++++  .+.+ .+ .++. +++|++|++++|.+..    ++   +..+++|++|++++|.+.+. +  
T Consensus        37 ~~~~l~~L~~L~Ls~n--~l~~-~~-~l~~-l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS--SITD-MT-GIEK-LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             EHHHHTTCCEEECCSS--CCCC-CT-TGGG-CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC-C--
T ss_pred             ChhHcCCCCEEEccCC--Cccc-Ch-hhcc-cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee-e--
Confidence            5788999999999999  4444 33 5777 9999999999999866    42   88999999999999999854 3  


Q ss_pred             hhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccC
Q 039739          156 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAP  235 (628)
Q Consensus       156 l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  235 (628)
                      +..+++|++|++++|.+. .++   +..+++|++|++++|.+.+ +   .+..+++|++|++++|...+.          
T Consensus       102 ~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~----------  163 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITK----------  163 (457)
T ss_dssp             CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCC----------
T ss_pred             cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccc----------
Confidence            889999999999999998 443   8899999999999999875 2   377889999999988743211          


Q ss_pred             cccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCE
Q 039739          236 NFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGM  315 (628)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  315 (628)
                                        +  .+..+++|+.|++++|.+.+ ++   +..+++|+.|++++|.+++.   .+..+++|+.
T Consensus       164 ------------------~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~  216 (457)
T 3bz5_A          164 ------------------L--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF  216 (457)
T ss_dssp             ------------------C--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred             ------------------c--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence                              1  24567889999999998874 44   36778888888888877764   3667777888


Q ss_pred             EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCC
Q 039739          316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN  395 (628)
Q Consensus       316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  395 (628)
                      |++++|.+.+ +|  +. .+++|+.|++++|.+++..   +..+++|+.|+++++               +|+.+++++|
T Consensus       217 L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n  274 (457)
T 3bz5_A          217 LDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHN  274 (457)
T ss_dssp             EECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTC
T ss_pred             EECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCC
Confidence            8888777764 55  32 3677777777777776532   345666777766554               3444556666


Q ss_pred             ccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcc
Q 039739          396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV  475 (628)
Q Consensus       396 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  475 (628)
                      ...+..+  ++.+++|+.|++++|...+.+|.   ..++|+.|+++             ++++|++|++++|.+++.   
T Consensus       275 ~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l---  333 (457)
T 3bz5_A          275 TQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTELTEL---  333 (457)
T ss_dssp             TTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSCC---
T ss_pred             ccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCCccccc---
Confidence            5444332  34677777888777776655553   23444444433             346788888888888763   


Q ss_pred             cccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhh
Q 039739          476 EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV  549 (628)
Q Consensus       476 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  549 (628)
                      .+..+++|+.|++++|++.+       .+.|..|.+.+|.+.|.      ..+.+|+.+++++|++++.+|..+
T Consensus       334 ~l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~------~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          334 DVSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE------GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CCTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE------EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             ccccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec------ceeeecCccccccCcEEEEcChhH
Confidence            27778888888888887764       24455566666666543      223456666777777776666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.3e-30  Score=269.66  Aligned_cols=300  Identities=20%  Similarity=0.144  Sum_probs=143.0

Q ss_pred             cceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEE
Q 039739          238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLD  317 (628)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  317 (628)
                      .++.|++ ..+.+....+..+..+++|++|++++|.+.+..|..+ ..+++|++|+++++.+.......+..+++|++|+
T Consensus        33 ~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           33 ETRLLDL-GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TCSEEEC-CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCcEEEC-CCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            4445555 3444444444444555555555555554443333332 4455555555555554444333444555555555


Q ss_pred             ccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCcc
Q 039739          318 ISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL  397 (628)
Q Consensus       318 l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  397 (628)
                      +++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+
T Consensus       111 Ls~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          111 ISENKIVILLDYMFQD-LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             CTTSCCCEECTTTTTT-CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCC
T ss_pred             CCCCccccCChhHccc-cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcC
Confidence            5555544333323322 455555555555554444444555555555555555544 34433344455555555555554


Q ss_pred             CCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccc
Q 039739          398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEF  477 (628)
Q Consensus       398 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  477 (628)
                      .......+..+++|+.|++++|...+.++.......+|++|++++|.+....+..+.++++|+.|++++|.+.+..+..+
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            44444444445555555555554444444333333455555555555543333344555555555555555544444445


Q ss_pred             cCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccC
Q 039739          478 CQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN  542 (628)
Q Consensus       478 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  542 (628)
                      ..+++|+.|++++|++.+..+..+. +++|+.|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCcc
Confidence            5555555555555555444443332 445555555555553 233333444555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.7e-29  Score=254.35  Aligned_cols=310  Identities=22%  Similarity=0.199  Sum_probs=255.6

Q ss_pred             cCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCcc
Q 039739          260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF  339 (628)
Q Consensus       260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  339 (628)
                      .+++++.++++++.+. .+|..++..+++|++|+++++.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc-CCCCCC
Confidence            4578999999998876 67777778999999999999998877777888999999999999998854444444 489999


Q ss_pred             EEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCc
Q 039739          340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN  419 (628)
Q Consensus       340 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  419 (628)
                      .|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++..   .+..+++|+.|++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence            9999999998554445788999999999999987 56655567789999999999988764   3457899999999999


Q ss_pred             cCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC
Q 039739          420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS  499 (628)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  499 (628)
                      .+.+     +...++|++|++++|.+... +.  ...++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+.
T Consensus       197 ~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          197 LLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence            7763     34456899999999988744 32  2357899999999998854  5688999999999999999877676


Q ss_pred             CCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCC
Q 039739          500 CFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ  578 (628)
Q Consensus       500 ~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~  578 (628)
                      .+. +++|+.|++++|++. .++.. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .++  +..+++
T Consensus       267 ~~~~l~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~  340 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT  340 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCC-EEECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCC
T ss_pred             HccccccCCEEECCCCcCc-ccCcc-cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhcc
Confidence            654 889999999999996 34544 577899999999999998 56777888999999999999998 444  778899


Q ss_pred             CcEEECCCCcccc
Q 039739          579 LQLLDLSNNSLHG  591 (628)
Q Consensus       579 L~~L~l~~~~~~~  591 (628)
                      |++|++++|++..
T Consensus       341 L~~L~l~~N~~~~  353 (390)
T 3o6n_A          341 LKNLTLSHNDWDC  353 (390)
T ss_dssp             CSEEECCSSCEEH
T ss_pred             CCEEEcCCCCccc
Confidence            9999999999975

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1e-28  Score=247.21  Aligned_cols=304  Identities=25%  Similarity=0.372  Sum_probs=172.6

Q ss_pred             CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCc
Q 039739          107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS  186 (628)
Q Consensus       107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~  186 (628)
                      +++|++|+++++.+..    ++  .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++  .+..+++
T Consensus        43 l~~L~~L~l~~~~i~~----~~--~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~  111 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS----IQ--GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTN  111 (347)
T ss_dssp             HTTCSEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTT
T ss_pred             cccccEEEEeCCcccc----ch--hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch--HHcCCCc
Confidence            5566666666655533    32  355566666666666665532 22 556666666666666655 333  2556666


Q ss_pred             ccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccE
Q 039739          187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEY  266 (628)
Q Consensus       187 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  266 (628)
                      |++|++++|.+...   ..+..+++|+.+++++|.....                             +..+..+++|+.
T Consensus       112 L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~~~~~-----------------------------~~~~~~l~~L~~  159 (347)
T 4fmz_A          112 LRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLSD-----------------------------LSPLSNMTGLNY  159 (347)
T ss_dssp             CSEEECTTSCCCCC---GGGTTCTTCCEEECTTCTTCCC-----------------------------CGGGTTCTTCCE
T ss_pred             CCEEECcCCcccCc---hhhccCCceeEEECCCCCCccc-----------------------------ccchhhCCCCcE
Confidence            66666666654421   1134444444444444321100                             011334444555


Q ss_pred             EEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccc
Q 039739          267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMN  346 (628)
Q Consensus       267 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~  346 (628)
                      |+++++.+.                         +...  +..+++|++|++++|.+. .++. + ..+++|+.+++++|
T Consensus       160 L~l~~~~~~-------------------------~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          160 LTVTESKVK-------------------------DVTP--IANLTDLYSLSLNYNQIE-DISP-L-ASLTSLHYFTAYVN  209 (347)
T ss_dssp             EECCSSCCC-------------------------CCGG--GGGCTTCSEEECTTSCCC-CCGG-G-GGCTTCCEEECCSS
T ss_pred             EEecCCCcC-------------------------Cchh--hccCCCCCEEEccCCccc-cccc-c-cCCCccceeecccC
Confidence            555554443                         2211  344555555555555554 2222 2 23566666666666


Q ss_pred             cCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc
Q 039739          347 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP  426 (628)
Q Consensus       347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  426 (628)
                      .+.+..+  +..+++|+.|++++|.+. ..+.  +..+++|++|++++|.++..  ..+..+++|+.|++++|.+.+.  
T Consensus       210 ~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--  280 (347)
T 4fmz_A          210 QITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--  280 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             CCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--
Confidence            6654332  556666777777666665 3333  44566777777777766542  3455677777777777776643  


Q ss_pred             ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          427 QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       427 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..|  +..+++|+.|++++|+++
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            346667777777777777766666677777777777777777775544  667777777777777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.7e-28  Score=261.54  Aligned_cols=311  Identities=22%  Similarity=0.197  Sum_probs=244.1

Q ss_pred             cCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCcc
Q 039739          260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF  339 (628)
Q Consensus       260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  339 (628)
                      .+.+++.++++++.+. .+|..++..+++|+.|+++++.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCC
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCC
Confidence            3567888888888776 56666678888999999998888877777788888999999999888754444444 488899


Q ss_pred             EEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCc
Q 039739          340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGN  419 (628)
Q Consensus       340 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  419 (628)
                      .|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+++.   .+..+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence            9999999888555555788889999999998887 55555566788899999998888764   3456788899999888


Q ss_pred             cCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC
Q 039739          420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS  499 (628)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  499 (628)
                      .+.+     +...++|++|++++|.+....+ .+  .++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|.
T Consensus       203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~  272 (597)
T 3oja_B          203 LLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH  272 (597)
T ss_dssp             CCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence            7763     3445688899999988763332 22  3688999999998875  35688889999999999988877676


Q ss_pred             CCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCC
Q 039739          500 CFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ  578 (628)
Q Consensus       500 ~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~  578 (628)
                      .+. +++|+.|++++|.+.+ ++.. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++. ++  +..+++
T Consensus       273 ~~~~l~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~  346 (597)
T 3oja_B          273 PFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHT  346 (597)
T ss_dssp             GGTTCSSCCEEECTTSCCCE-EECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCC
T ss_pred             HhcCccCCCEEECCCCCCCC-CCcc-cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCC
Confidence            554 7889999999998864 4444 567899999999999998 567778889999999999999983 43  677899


Q ss_pred             CcEEECCCCccccc
Q 039739          579 LQLLDLSNNSLHGS  592 (628)
Q Consensus       579 L~~L~l~~~~~~~~  592 (628)
                      |++|++++|++.+.
T Consensus       347 L~~L~l~~N~~~~~  360 (597)
T 3oja_B          347 LKNLTLSHNDWDCN  360 (597)
T ss_dssp             CSEEECCSSCEEHH
T ss_pred             CCEEEeeCCCCCCh
Confidence            99999999998753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=3.1e-28  Score=247.53  Aligned_cols=300  Identities=22%  Similarity=0.202  Sum_probs=250.8

Q ss_pred             cCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccE
Q 039739          285 NNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI  364 (628)
Q Consensus       285 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  364 (628)
                      .+++++.++++++.++......+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+..|..+..+++|+.
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            568999999999988776555678899999999999999844333444 4899999999999999877888999999999


Q ss_pred             EECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc
Q 039739          365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS  444 (628)
Q Consensus       365 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  444 (628)
                      |++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+++.   .+..+++|++|++++|.
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            999999998 88887777899999999999999887777888999999999999998754   35678899999999998


Q ss_pred             CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccc
Q 039739          445 LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGT  524 (628)
Q Consensus       445 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  524 (628)
                      +.     .+...++|++|++++|.+... +.  ...++|+.|++++|.+.+. +....++.|+.|++++|.+.+..+.. 
T Consensus       198 l~-----~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-  267 (390)
T 3o6n_A          198 LS-----TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP-  267 (390)
T ss_dssp             CS-----EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG-
T ss_pred             cc-----ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhH-
Confidence            76     234567899999999998744 33  3358999999999999853 44445899999999999997554544 


Q ss_pred             cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739          525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~  601 (628)
                      +..+++|+.|++++|++++ ++..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++...-+..+.+++
T Consensus       268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~  342 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK  342 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred             ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCC
Confidence            8899999999999999984 5666788999999999999999 7888899999999999999999854334444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=7.7e-32  Score=281.18  Aligned_cols=344  Identities=19%  Similarity=0.131  Sum_probs=211.4

Q ss_pred             cccccCCCccEEEccCCcccCcCchhHHhcCc----cCcEEEeecCCCCCC----CCcccccCCccCEEEccCCcCCccc
Q 039739          256 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT----KLRQLSLVNDSLGGP----FQLPIHSHKRLGMLDISNNNFRGHI  327 (628)
Q Consensus       256 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~~  327 (628)
                      ..+..+++|++|++++|.+.+..+..++..++    +|++|++++|.+++.    .+..+..+++|++|++++|.+.+..
T Consensus        50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  129 (461)
T 1z7x_W           50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  129 (461)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence            34555666777777776665544545544555    577777777766642    2445667778888888887776444


Q ss_pred             chhhhhh----CCCccEEEcccccCCCc----ccccccCCCCccEEECcCCcccCccchhhhc----CCccccEEEccCC
Q 039739          328 PVEIGDV----LPSLFSLNISMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHLVV----GCVNLESLALSNN  395 (628)
Q Consensus       328 ~~~~~~~----~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~  395 (628)
                      +..+...    .++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+.....+..    ..++|++|++++|
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  209 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC  209 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence            4443332    34688888888877753    2445666778888888888765332322222    2457888888888


Q ss_pred             ccCCcc----cccccCCCCCcEEEccCccCcCcc-----cccccCCCcccEEEccCCcCCCc----cCccccCCCCcceE
Q 039739          396 SLEGHM----FSRNFNLTNLRWLQLEGNHFVGEI-----PQSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQHI  462 (628)
Q Consensus       396 ~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L  462 (628)
                      .++...    +..+..+++|+.|++++|.+.+..     +..+..+++|++|++++|.+.+.    ++..+..+++|++|
T Consensus       210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  289 (461)
T 1z7x_W          210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL  289 (461)
T ss_dssp             CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred             CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence            776542    344456778888888888765432     22223567788888888877643    45556667888888


Q ss_pred             ECCCCcCCCCCccccc-----CCCCCCEEEccCCcCcCCCCCCC-----CCCcccEEecCCCcCcCCCCcc---ccc-cC
Q 039739          463 MMPKNHLEGPIPVEFC-----QLDWLQILDISDNNISGSLPSCF-----HPLSVEQVHLSKNMLHGQLKRG---TFF-NS  528 (628)
Q Consensus       463 ~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~---~~~-~~  528 (628)
                      ++++|.+.+..+..+.     ..++|+.|++++|.+++.....+     ..++|+.|++++|.+.+..+..   .+. ..
T Consensus       290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  369 (461)
T 1z7x_W          290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG  369 (461)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence            8888876543333322     33678888888877664321111     1466777777777664322221   011 15


Q ss_pred             CCccEEECCCcccCC----ccchhhcCCCCCcEEECCCCcCCccCCcccc-----CCCCCcEEECCCCcccccccccccc
Q 039739          529 YSLVTLDLSYNRLNG----NISDWVDGLSQLSHLILGHNNLEGEVPVQLC-----KLNQLQLLDLSNNSLHGSIPLCLDN  599 (628)
Q Consensus       529 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-----~l~~L~~L~l~~~~~~~~ip~~~~~  599 (628)
                      ++|+.|++++|.+++    .++..+..+++|++|++++|++++.....+.     ...+|+.|++.++......++.++.
T Consensus       370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~  449 (461)
T 1z7x_W          370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  449 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence            678888888887765    5666677777888888888877744322222     2345777777777666544444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.3e-27  Score=237.22  Aligned_cols=287  Identities=20%  Similarity=0.232  Sum_probs=199.3

Q ss_pred             cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739          288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL  367 (628)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  367 (628)
                      .++.++++++.++. .+..+  .+.++.|++++|.+.+..+..+.. +++|+.|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            45556665555442 22222  356777777777776333334433 677777777777777666677777777888888


Q ss_pred             cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcC--cccccccCCCcccEEEccCCcC
Q 039739          368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSL  445 (628)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~  445 (628)
                      ++|.+. .++...+   ++|++|++++|.+.......+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            777776 5665442   677788888777776655566777788888888777752  455566666 778888888777


Q ss_pred             CCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccc
Q 039739          446 SGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGT  524 (628)
Q Consensus       446 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~  524 (628)
                      .+ +|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+. +++|+.|++++|++. .+|.. 
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-  259 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-  259 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT-
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh-
Confidence            64 343333  6788888888888776667777888888888888887765554443 677888888888775 66665 


Q ss_pred             cccCCCccEEECCCcccCCccchhhcC------CCCCcEEECCCCcCC--ccCCccccCCCCCcEEECCCCc
Q 039739          525 FFNSYSLVTLDLSYNRLNGNISDWVDG------LSQLSHLILGHNNLE--GEVPVQLCKLNQLQLLDLSNNS  588 (628)
Q Consensus       525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~i~--~~~~~~l~~l~~L~~L~l~~~~  588 (628)
                      +..+++|+.|++++|.+++..+..|..      .+.|+.|++++|++.  ...|..|..+++|+.+++++|+
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            778888999999998888766666654      367888999999887  5667788888999999988875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5e-30  Score=276.38  Aligned_cols=435  Identities=17%  Similarity=0.141  Sum_probs=257.2

Q ss_pred             hhhhcccCCCCcEEecCCCCC--------------CCcchhHhhccCCCCceEecccccccccccCCCccc-cCc-ccee
Q 039739           23 ATQELHNFTNLEYLTLDSSSL--------------HISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPH-FKS-LEHL   86 (628)
Q Consensus        23 ~~~~~~~~~~L~~L~l~~~~~--------------~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~-L~~L   86 (628)
                      .+..+.++++|++|+++++..              .......+...+++|++|++++|.+....+. .+.. ++. |++|
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L  143 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEE
Confidence            345566777788888866421              1112333332378888888888766544332 3444 344 8888


Q ss_pred             ecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccc----ccCchhhhcCCCC
Q 039739           87 DMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR----GSLPWCLANMTSL  162 (628)
Q Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~----~~~~~~l~~l~~L  162 (628)
                      ++++|. .........+...+++|++|++++|.+...+.......+..+++|++|++++|.+.    ..++..+..+++|
T Consensus       144 ~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          144 KLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             EEESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred             ECcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence            888773 12222222333338888888888887643222212234567788888888888775    2445556678888


Q ss_pred             CEEEccccccccccCCCCCCCCCcccEEEcccCeeee--ecCCCCcCCCCcccEEeccCCcccccccccccCccCcccce
Q 039739          163 RILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQI--PISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLS  240 (628)
Q Consensus       163 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  240 (628)
                      ++|++++|.+. .++. .+..+++|++|+++......  ......+..+++|+.+.+.++.                   
T Consensus       223 ~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------------  281 (592)
T 3ogk_B          223 VSVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-------------------  281 (592)
T ss_dssp             CEEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-------------------
T ss_pred             cEEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-------------------
Confidence            88888888776 4554 57778888888887532210  1111234455566666554321                   


Q ss_pred             eeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCC-CCcccccCCccCEEEcc
Q 039739          241 RLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP-FQLPIHSHKRLGMLDIS  319 (628)
Q Consensus       241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~  319 (628)
                                ...+|..+..+++|++|++++|.+.+.....++..+++|++|++.++ +.+. .......+++|++|+++
T Consensus       282 ----------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          282 ----------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             ----------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ----------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEee
Confidence                      12344455566777777777776544444344566777777777632 2221 11122456777777777


Q ss_pred             C-----------CcCCcccchhhhhhCCCccEEEcccccCCCcccccccC-CCCccEEECc----CCcccCc----cchh
Q 039739          320 N-----------NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGN-MKFLQILDLS----NNHLTGE----IPEH  379 (628)
Q Consensus       320 ~-----------~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~----~~~~  379 (628)
                      +           +.+++.....+...+++|+.|++..+.+++..+..+.. +++|+.|+++    .+.+++.    ....
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            3           34443323333445778888888766776555444444 7778888775    3444421    1112


Q ss_pred             hhcCCccccEEEccCCc--cCCccccccc-CCCCCcEEEccCccCcCc-ccccccCCCcccEEEccCCcCCCc-cCcccc
Q 039739          380 LVVGCVNLESLALSNNS--LEGHMFSRNF-NLTNLRWLQLEGNHFVGE-IPQSLSKCFVLEGLFLNNNSLSGK-IPRWLG  454 (628)
Q Consensus       380 ~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~  454 (628)
                      .+.++++|++|+++.|.  +++.....+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. .+..+.
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence            24457888888886543  4443333333 477888888888877643 344556778888888888876543 333445


Q ss_pred             CCCCcceEECCCCcCCCCCcccc-cCCCCCCEEEccCC
Q 039739          455 NLTRLQHIMMPKNHLEGPIPVEF-CQLDWLQILDISDN  491 (628)
Q Consensus       455 ~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~  491 (628)
                      .+++|++|++++|+++......+ ..+|.+....+..+
T Consensus       511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            67888888888888775544333 35676666665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.3e-27  Score=233.28  Aligned_cols=268  Identities=20%  Similarity=0.192  Sum_probs=173.5

Q ss_pred             CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEE
Q 039739          311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESL  390 (628)
Q Consensus       311 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  390 (628)
                      +.++.|++++|.+.+..+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+. .++...   .++|++|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L  126 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  126 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEE
Confidence            4555666666655522222332 3566666666666666555666666666666666666665 455433   2566667


Q ss_pred             EccCCccCCcccccccCCCCCcEEEccCccCcC--cccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739          391 ALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH  468 (628)
Q Consensus       391 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  468 (628)
                      ++++|.+.......+..+++|++|++++|.+..  ..+..+..+++|++|++++|.+.. ++..+.  ++|++|++++|.
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~  203 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK  203 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence            777666665555556666677777777666642  345566667777777777776653 333332  677777777777


Q ss_pred             CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch
Q 039739          469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD  547 (628)
Q Consensus       469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  547 (628)
                      +.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|++. .++.. +..+++|+.|++++|.+++..+.
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChh
Confidence            7666666677777777777777777655554333 567777777777775 55555 67788888999998888876666


Q ss_pred             hhcC------CCCCcEEECCCCcCCc--cCCccccCCCCCcEEECCCCc
Q 039739          548 WVDG------LSQLSHLILGHNNLEG--EVPVQLCKLNQLQLLDLSNNS  588 (628)
Q Consensus       548 ~~~~------l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~~~  588 (628)
                      .|..      .+.++.|++++|++..  ..|..|..+++++.+++++|+
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            6643      3778899999998863  456788889999999998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=9.9e-31  Score=272.76  Aligned_cols=339  Identities=20%  Similarity=0.156  Sum_probs=161.6

Q ss_pred             CCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhh-hcCC----CCCEEEcccccccc----ccC
Q 039739          107 MPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCL-ANMT----SLRILDVSSNQLTG----SIS  177 (628)
Q Consensus       107 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l-~~l~----~L~~L~l~~~~~~~----~l~  177 (628)
                      +++|++|++++|.++.......+..+..+++|++|++++|.+.+..+..+ ..++    +|++|++++|.+.+    .++
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            55555555555544321111111234445555555555555543222222 2233    45555555555541    223


Q ss_pred             CCCCCCCCcccEEEcccCeeeeecCC----CCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcc
Q 039739          178 SSPLVHLTSIEELYLSNNHFQIPISL----EPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFI  253 (628)
Q Consensus       178 ~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  253 (628)
                      . .+..+++|++|++++|.+......    ......++|++|++++|.+.+....                        .
T Consensus       107 ~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------------~  161 (461)
T 1z7x_W          107 S-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE------------------------P  161 (461)
T ss_dssp             H-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH------------------------H
T ss_pred             H-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH------------------------H
Confidence            3 355555555555555554321000    0011233455555555544322110                        1


Q ss_pred             cccccccCCCccEEEccCCcccCcCchhHHh----cCccCcEEEeecCCCCCCC----CcccccCCccCEEEccCCcCCc
Q 039739          254 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE----NNTKLRQLSLVNDSLGGPF----QLPIHSHKRLGMLDISNNNFRG  325 (628)
Q Consensus       254 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~  325 (628)
                      ++..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|.+++..    +..+..+++|++|++++|.+.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            2344555677777777777765443433322    2346777777766665432    2334456667777777666553


Q ss_pred             ccchhhh----hhCCCccEEEcccccCCCc----ccccccCCCCccEEECcCCcccCccchhh----hcCCccccEEEcc
Q 039739          326 HIPVEIG----DVLPSLFSLNISMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHL----VVGCVNLESLALS  393 (628)
Q Consensus       326 ~~~~~~~----~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~  393 (628)
                      .....+.    ..+++|+.|++++|.++..    ++..+..+++|+.|++++|.+.+..+..+    ....++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            2222221    1245666666666666532    34445556666666666666542222111    1122466666666


Q ss_pred             CCccCCcc----cccccCCCCCcEEEccCccCcCcccccccC-----CCcccEEEccCCcCCC----ccCccccCCCCcc
Q 039739          394 NNSLEGHM----FSRNFNLTNLRWLQLEGNHFVGEIPQSLSK-----CFVLEGLFLNNNSLSG----KIPRWLGNLTRLQ  460 (628)
Q Consensus       394 ~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~  460 (628)
                      +|.+++..    +..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+.+    .++..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            66555432    222334455666666655554332222211     3455555555555543    3344444455555


Q ss_pred             eEECCCCcCC
Q 039739          461 HIMMPKNHLE  470 (628)
Q Consensus       461 ~L~l~~~~~~  470 (628)
                      +|++++|.+.
T Consensus       402 ~L~l~~N~i~  411 (461)
T 1z7x_W          402 ELDLSNNCLG  411 (461)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCCCC
Confidence            5555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.4e-28  Score=241.25  Aligned_cols=250  Identities=30%  Similarity=0.438  Sum_probs=155.8

Q ss_pred             CccCEEEccCCcCCc--ccchhhhhhCCCccEEEccc-ccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccc
Q 039739          311 KRLGMLDISNNNFRG--HIPVEIGDVLPSLFSLNISM-NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNL  387 (628)
Q Consensus       311 ~~L~~L~l~~~~i~~--~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  387 (628)
                      .+++.|+++++.+.+  .+|..+.. +++|+.|++++ |.+.+..|..+..+++|++|++++|.+.+.++.. +..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence            356666666666665  55555544 56666666663 5555555666666666666666666655334432 2335566


Q ss_pred             cEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCC-cccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739          388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK  466 (628)
Q Consensus       388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  466 (628)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..++ .|++|++++|.+.+..+..+..++ |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            6666666655554555555555666666666555555555555554 555555555555555555555554 55555555


Q ss_pred             CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc
Q 039739          467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS  546 (628)
Q Consensus       467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  546 (628)
                      |.+.+..+..+..+++|+.|++++|++.                       +.++.  +..+++|+.|++++|.+++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~--~~~l~~L~~L~Ls~N~l~~~~p  261 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLA-----------------------FDLGK--VGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEEC-----------------------CBGGG--CCCCTTCCEEECCSSCCEECCC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCcee-----------------------eecCc--ccccCCCCEEECcCCcccCcCC
Confidence            5555445555555555555555555443                       23332  4556788888888888887788


Q ss_pred             hhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739          547 DWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL  589 (628)
Q Consensus       547 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  589 (628)
                      ..+..+++|+.|++++|++++.+|+. .++++|+.+++.+|+.
T Consensus       262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            88888888888888888888777776 7788888888888873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=1.7e-27  Score=255.36  Aligned_cols=300  Identities=22%  Similarity=0.198  Sum_probs=252.9

Q ss_pred             cCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccE
Q 039739          285 NNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI  364 (628)
Q Consensus       285 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  364 (628)
                      .+++++.+++.++.+....+..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|..+..+++|+.
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            4678999999999887766666788999999999999998544445544 899999999999999887888899999999


Q ss_pred             EECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc
Q 039739          365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS  444 (628)
Q Consensus       365 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  444 (628)
                      |++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.   .+..+++|++|++++|.
T Consensus       128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence            999999998 78877777899999999999999888888888999999999999998854   25668899999999998


Q ss_pred             CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccc
Q 039739          445 LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGT  524 (628)
Q Consensus       445 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  524 (628)
                      +.     .+...++|+.|++++|.+.... ..  ..++|+.|++++|.+++ .+....++.|+.|++++|.+.+..+.. 
T Consensus       204 l~-----~l~~~~~L~~L~ls~n~l~~~~-~~--~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~-  273 (597)
T 3oja_B          204 LS-----TLAIPIAVEELDASHNSINVVR-GP--VNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHP-  273 (597)
T ss_dssp             CS-----EEECCTTCSEEECCSSCCCEEE-CS--CCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGG-
T ss_pred             cc-----cccCCchhheeeccCCcccccc-cc--cCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHH-
Confidence            76     3455678999999999987433 22  24789999999999985 344445899999999999997665555 


Q ss_pred             cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739          525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~  601 (628)
                      +..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++.+.-+..+.+++
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~  348 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK  348 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred             hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence            8899999999999999985 5667788999999999999999 7888899999999999999999865455555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.4e-29  Score=271.02  Aligned_cols=424  Identities=15%  Similarity=0.091  Sum_probs=264.6

Q ss_pred             cEEecCCCCCCCcchhHhhccCCCCceEecccccccc---cccCC--C---------ccccCccceeecccchhhcCcch
Q 039739           34 EYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNG---LVRGQ--G---------FPHFKSLEHLDMEGALIALNTSF   99 (628)
Q Consensus        34 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---~~~~~--~---------~~~l~~L~~L~l~~~~~~~~~~~   99 (628)
                      +.+.+..+. .......+.+ +++|++|++++|....   .+|..  .         +.++++|++|+++++  .+.+..
T Consensus        53 ~~l~~~~~~-~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~  128 (592)
T 3ogk_B           53 EHVTMALCY-TATPDRLSRR-FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLD  128 (592)
T ss_dssp             CEEEESCGG-GSCHHHHHHH-CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHH
T ss_pred             cEEEEeecc-ccChHHHHHh-CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc--EecHHH
Confidence            345555442 2232444555 9999999998864321   12110  1         127899999999999  677777


Q ss_pred             hhhhhccCCC-ccEEeeccccC-CCCCCccccccccCCCCCcEEEccCCccccc----CchhhhcCCCCCEEEccccccc
Q 039739          100 LQIIGESMPS-LKYLSLFGSIL-GTNSSRILDRGLCSLVHLQVLNIAYNDLRGS----LPWCLANMTSLRILDVSSNQLT  173 (628)
Q Consensus       100 ~~~~~~~~~~-L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~  173 (628)
                      +..++..+++ |++|++++|.. ...   ........+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.
T Consensus       129 ~~~l~~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~  205 (592)
T 3ogk_B          129 LDRLAKARADDLETLKLDKCSGFTTD---GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA  205 (592)
T ss_dssp             HHHHHHHHGGGCCEEEEESCEEEEHH---HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred             HHHHHHhccccCcEEECcCCCCcCHH---HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence            7777764555 99999999873 210   1112345889999999999988755    3445678999999999999875


Q ss_pred             ----cccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCC
Q 039739          174 ----GSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYG  249 (628)
Q Consensus       174 ----~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  249 (628)
                          +.++. .+..+++|++|++++|.+.+ .+ ..+..+++|++++++.....                         .
T Consensus       206 ~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~-------------------------~  257 (592)
T 3ogk_B          206 KISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNED-------------------------I  257 (592)
T ss_dssp             SCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCC-------------------------T
T ss_pred             ccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccc-------------------------c
Confidence                23333 45678999999999987763 22 44667788888887642110                         0


Q ss_pred             CCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCC-cccccCCccCEEEccCCcCCcccc
Q 039739          250 DGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQ-LPIHSHKRLGMLDISNNNFRGHIP  328 (628)
Q Consensus       250 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~  328 (628)
                      .....+..+..+++|+.+++.+... ..++.. +..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+...
T Consensus       258 ~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l  334 (592)
T 3ogk_B          258 GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL  334 (592)
T ss_dssp             TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH
T ss_pred             chHHHHHHhhccccccccCccccch-hHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH
Confidence            0112334566778899998887532 234443 4678889999998887554332 224678888888887 33433333


Q ss_pred             hhhhhhCCCccEEEccc-----------ccCCCc-ccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc---
Q 039739          329 VEIGDVLPSLFSLNISM-----------NALDGS-IPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS---  393 (628)
Q Consensus       329 ~~~~~~~~~L~~L~L~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~---  393 (628)
                      ..+...+++|++|++.+           +.++.. ++.....+++|+.|+++.+.+++.....+...+++|+.|+++   
T Consensus       335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  414 (592)
T 3ogk_B          335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD  414 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred             HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence            44444578888888883           334422 222234577788888866666644444444457778888775   


Q ss_pred             -CCccCCc-----ccccccCCCCCcEEEccCcc--CcCcccccc-cCCCcccEEEccCCcCCCc-cCccccCCCCcceEE
Q 039739          394 -NNSLEGH-----MFSRNFNLTNLRWLQLEGNH--FVGEIPQSL-SKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIM  463 (628)
Q Consensus       394 -~~~l~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~  463 (628)
                       .+.+++.     ....+.++++|+.|+++.|.  +++..+..+ ..+++|++|++++|.+.+. .+..+.++++|++|+
T Consensus       415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence             3444432     12224457777777776543  333322223 2366777777777766542 333446667777777


Q ss_pred             CCCCcCCCCC-cccccCCCCCCEEEccCCcCcC
Q 039739          464 MPKNHLEGPI-PVEFCQLDWLQILDISDNNISG  495 (628)
Q Consensus       464 l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  495 (628)
                      +++|.+++.. +.....+++|+.|++++|++++
T Consensus       495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            7777654322 2223456677777777776654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=5e-26  Score=225.66  Aligned_cols=289  Identities=19%  Similarity=0.209  Sum_probs=167.7

Q ss_pred             CccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEE
Q 039739          263 DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN  342 (628)
Q Consensus       263 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  342 (628)
                      .++.++++++.+. .+|..+   .+.++.|+++++.+++..+..+..+++|++|++++|.+.+..|..+.. +++|+.|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence            4555555555544 333322   245666666666665554445566666666666666665433444433 56666666


Q ss_pred             cccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCC--cccccccCCCCCcEEEccCcc
Q 039739          343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG--HMFSRNFNLTNLRWLQLEGNH  420 (628)
Q Consensus       343 L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~  420 (628)
                      +++|.++ .+|..+.  ++|+.|++++|.+. .++...+.++++|+.|++++|.+..  .....+..+++|+.|++++|.
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            6666655 3333322  56666666666665 4444445556666666666666543  333445566666666666666


Q ss_pred             CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCC
Q 039739          421 FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC  500 (628)
Q Consensus       421 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  500 (628)
                      +.. +|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++.......
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l  259 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL  259 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred             ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence            652 333322  56666666666666555566666666666666666666555555666666666666666666322223


Q ss_pred             CCCCcccEEecCCCcCcCCCCccccc------cCCCccEEECCCcccCC--ccchhhcCCCCCcEEECCCCc
Q 039739          501 FHPLSVEQVHLSKNMLHGQLKRGTFF------NSYSLVTLDLSYNRLNG--NISDWVDGLSQLSHLILGHNN  564 (628)
Q Consensus       501 ~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~  564 (628)
                      ..+++|+.|++++|+++ .++...+.      ..++++.|++++|.+..  ..|..|..+++++.+++++|+
T Consensus       260 ~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            33566666666666664 33332232      24678888888887753  456778888888888888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=9.6e-28  Score=235.31  Aligned_cols=251  Identities=26%  Similarity=0.363  Sum_probs=216.8

Q ss_pred             ccCcEEEeecCCCCC--CCCcccccCCccCEEEccC-CcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCcc
Q 039739          287 TKLRQLSLVNDSLGG--PFQLPIHSHKRLGMLDISN-NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ  363 (628)
Q Consensus       287 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  363 (628)
                      .+++.|+++++.+.+  ..+..+..+++|++|++++ +.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            578999999999998  7888999999999999995 8888888988876 89999999999999988999999999999


Q ss_pred             EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCC-CCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739          364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLT-NLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  442 (628)
Q Consensus       364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  442 (628)
                      +|++++|.+.+.++..+ ..+++|++|++++|.+++..+..+..++ +|+.|++++|.+.+..|..+..++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            99999999986666544 4599999999999999877888888888 999999999999988899998887 99999999


Q ss_pred             CcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCc
Q 039739          443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKR  522 (628)
Q Consensus       443 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  522 (628)
                      |.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++                       .+|.
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~p~  262 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-----------------------TLPQ  262 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-----------------------CCCG
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-----------------------cCCh
Confidence            999988899999999999999999999865554 7788888888888888764                       3333


Q ss_pred             cccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       523 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      . +..+++|+.|++++|.+++.+|.. +.+++|+.|++++|+..
T Consensus       263 ~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          263 G-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             G-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred             H-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence            3 666778888888888887777765 77788888888888643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=4e-26  Score=226.47  Aligned_cols=287  Identities=20%  Similarity=0.231  Sum_probs=181.2

Q ss_pred             CccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEE
Q 039739          263 DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLN  342 (628)
Q Consensus       263 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  342 (628)
                      .++.++++++.+. .+|..+   .++++.|+++++.+....+..+..+++|++|++++|.+.+..+..+.. +++|+.|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence            4566666666554 444332   246666666666666555555666677777777777666444444443 66777777


Q ss_pred             cccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCC--cccccccCCCCCcEEEccCcc
Q 039739          343 ISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG--HMFSRNFNLTNLRWLQLEGNH  420 (628)
Q Consensus       343 L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~  420 (628)
                      +++|.+. .+|..+.  ++|++|++++|.+. .++...+.++++|++|++++|.++.  ..+..+..+ +|+.|++++|.
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            7777666 3443332  56777777777665 5555555566777777777776643  333444444 67777777777


Q ss_pred             CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCC-
Q 039739          421 FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-  499 (628)
Q Consensus       421 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-  499 (628)
                      +.+ +|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|++. ..|. 
T Consensus       184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred             CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence            663 443332  56777777777776666666777777777777777777666666777777777777777776 3333 


Q ss_pred             CCCCCcccEEecCCCcCcCCCCcccccc------CCCccEEECCCcccC--CccchhhcCCCCCcEEECCCCc
Q 039739          500 CFHPLSVEQVHLSKNMLHGQLKRGTFFN------SYSLVTLDLSYNRLN--GNISDWVDGLSQLSHLILGHNN  564 (628)
Q Consensus       500 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~  564 (628)
                      ...+++|+.|++++|+++ .++...+..      .++|+.|++++|.+.  ...+..|..+++|+.+++++|+
T Consensus       260 l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            333667777777777775 333332332      467899999999876  5677788889999999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1e-28  Score=266.23  Aligned_cols=443  Identities=16%  Similarity=0.112  Sum_probs=239.2

Q ss_pred             EEeCCCCCCCCccchhhhcccCCCCcEEecCCCCCCC-c-------------chhHhhccCCCCceEecccccccccccC
Q 039739            9 TLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHI-S-------------LLQSIASIFPSLKNLSMIGCEVNGLVRG   74 (628)
Q Consensus         9 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-------------~~~~l~~~~~~L~~L~l~~~~~~~~~~~   74 (628)
                      .++++.+....   ....+.++++|++|+++++.... .             ....+...+++|++|++++|.+....+.
T Consensus        47 ~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  123 (594)
T 2p1m_B           47 KVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE  123 (594)
T ss_dssp             EEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             EEeeccccccC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence            45555443322   33557777888888887764211 0             1223333378888888888776654433


Q ss_pred             CCcc-ccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCc--ccc-
Q 039739           75 QGFP-HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYND--LRG-  150 (628)
Q Consensus        75 ~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~-  150 (628)
                       .+. .+++|++|++++|. .+.......+...+++|++|++++|.+...+..........+++|++|++++|.  +.. 
T Consensus       124 -~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~  201 (594)
T 2p1m_B          124 -LIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS  201 (594)
T ss_dssp             -HHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH
T ss_pred             -HHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH
Confidence             333 57888888888773 222222333332388888888888876432222222334467788888888875  221 


Q ss_pred             cCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCee-------eeecCCCCcCCCCcccEEe-ccCCcc
Q 039739          151 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHF-------QIPISLEPFFNHSRLKSFY-ADNNEI  222 (628)
Q Consensus       151 ~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~~l~~l~~L~~L~-l~~~~~  222 (628)
                      .+...+..+++|++|++++|...+.++. .+..+++|++|+++.+..       .. .. ..+.++++|+.+. +...  
T Consensus       202 ~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~-~~l~~~~~L~~Ls~~~~~--  276 (594)
T 2p1m_B          202 ALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSG-LS-VALSGCKELRCLSGFWDA--  276 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHH-HH-HHHHTCTTCCEEECCBTC--
T ss_pred             HHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHH-HH-HHHhcCCCcccccCCccc--
Confidence            1222334578888888888732224554 566778888888665531       11 00 1344556666552 2111  


Q ss_pred             cccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCC
Q 039739          223 NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP  302 (628)
Q Consensus       223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  302 (628)
                                                 ....++..+..+++|++|++++|.+.+.....++..+++|++|++.+| +.+.
T Consensus       277 ---------------------------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~  328 (594)
T 2p1m_B          277 ---------------------------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA  328 (594)
T ss_dssp             ---------------------------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred             ---------------------------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence                                       011233333455666666666666543333344456666666666655 2211


Q ss_pred             CCcc-cccCCccCEEEccC---------CcCCcccchhhhhhCCCccEEEcccccCCCccccccc-CCCCccEEECc--C
Q 039739          303 FQLP-IHSHKRLGMLDISN---------NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFG-NMKFLQILDLS--N  369 (628)
Q Consensus       303 ~~~~-l~~~~~L~~L~l~~---------~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~--~  369 (628)
                      .... ...+++|++|++.+         +.+++.....+...+++|+.|.+..+.+++.....+. .+++|+.|+++  +
T Consensus       329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            1111 12356666666632         2333222233333467777776666666544333333 46677777776  2


Q ss_pred             ----CcccCccc-----hhhhcCCccccEEEccCCccCCcccccccC-CCCCcEEEccCccCcCcccccc-cCCCcccEE
Q 039739          370 ----NHLTGEIP-----EHLVVGCVNLESLALSNNSLEGHMFSRNFN-LTNLRWLQLEGNHFVGEIPQSL-SKCFVLEGL  438 (628)
Q Consensus       370 ----~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L  438 (628)
                          +.++ ..+     ...+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|
T Consensus       409 ~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L  486 (594)
T 2p1m_B          409 PKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL  486 (594)
T ss_dssp             TTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred             CCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence                2333 111     11234567777777765 454444444443 6677777777777654433333 456777777


Q ss_pred             EccCCcCCCccCc-cccCCCCcceEECCCCcCCCCCcccc-cCCCCCCEEEccCC
Q 039739          439 FLNNNSLSGKIPR-WLGNLTRLQHIMMPKNHLEGPIPVEF-CQLDWLQILDISDN  491 (628)
Q Consensus       439 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~  491 (628)
                      ++++|.+.+.... .+..+++|++|++++|.++......+ ..+|+|+...+..+
T Consensus       487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            7777776433222 33446777777777776643222223 34566665555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=5.8e-26  Score=227.33  Aligned_cols=260  Identities=20%  Similarity=0.207  Sum_probs=148.8

Q ss_pred             CccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEE
Q 039739          311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESL  390 (628)
Q Consensus       311 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  390 (628)
                      ++|++|++++|.+. .++......+++|+.|++++|.+++..+..+..+++|++|++++|.+. .++...+.++++|++|
T Consensus        52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence            35555666555555 233322222555555555555555444445555555555555555554 4444444445555555


Q ss_pred             EccCCccCCccc-ccccCCCCCcEEEccCcc-CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739          391 ALSNNSLEGHMF-SRNFNLTNLRWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH  468 (628)
Q Consensus       391 ~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  468 (628)
                      ++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            555555554332 244455555555555552 333334445555555555555555554445555555555555555555


Q ss_pred             CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC----c
Q 039739          469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG----N  544 (628)
Q Consensus       469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~  544 (628)
                      +....+..+..+++|+.|++++|.+.+..+..+                   .  .......++.++++++.+.+    .
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-------------------~--~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-------------------S--TGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             cccchhhhhhhcccccEEECCCCcccccccccc-------------------c--cccccchhhccccccccccCcchhh
Confidence            542222223345555555555555443221110                   0  02234567777887777764    3


Q ss_pred             cchhhcCCCCCcEEECCCCcCCccCCcc-ccCCCCCcEEECCCCccccccc
Q 039739          545 ISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       545 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~~ip  594 (628)
                      +|..+..+++|+.|++++|+++ .+|.. |.++++|++|++++|++.+..|
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            6778899999999999999999 67766 5899999999999999997555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=3.5e-25  Score=217.12  Aligned_cols=247  Identities=21%  Similarity=0.204  Sum_probs=138.7

Q ss_pred             CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCcc---chhhhcCCccccEE
Q 039739          314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI---PEHLVVGCVNLESL  390 (628)
Q Consensus       314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L  390 (628)
                      +.++.+++.++ .+|..+   .+++++|++++|.+....+..+..+++|+.|++++|.+. ..   +.. +..+++|++|
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-~~~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQS-DFGTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHH-HHSCSCCCEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccc-cccccccCEE
Confidence            35566655554 555433   246666666666666333334556666666666666554 22   122 2235556666


Q ss_pred             EccCCccCCcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcC
Q 039739          391 ALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL  469 (628)
Q Consensus       391 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  469 (628)
                      ++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus        84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            666555542 22334455555555555555543322 3444555555555555555444444455555555555555554


Q ss_pred             CC-CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739          470 EG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW  548 (628)
Q Consensus       470 ~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  548 (628)
                      .+ ..|..+..+++|+.|++++|++.                       +..+. .+..+++|+.|++++|.+++..+..
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~  218 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLE-----------------------QLSPT-AFNSLSSLQVLNMSHNNFFSLDTFP  218 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCC-----------------------EECTT-TTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcC-----------------------CcCHH-HhcCCCCCCEEECCCCccCccChhh
Confidence            43 23444444555555555554444                       22222 2666777777777777777666666


Q ss_pred             hcCCCCCcEEECCCCcCCccCCccccCCC-CCcEEECCCCcccc
Q 039739          549 VDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNSLHG  591 (628)
Q Consensus       549 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~~~  591 (628)
                      +..+++|+.|++++|++++..|..+..++ +|++|++++|++..
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            77777777777777777766777777774 77777777777764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=223.63  Aligned_cols=247  Identities=24%  Similarity=0.240  Sum_probs=150.1

Q ss_pred             ccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEE
Q 039739          312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLA  391 (628)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (628)
                      ....++..+..+. .+|..+   .++++.|++++|.+....+..+..+++|+.|++++|.+. .++...+.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            3556777776665 666654   357777888887777666667777777777777777776 55555566677777777


Q ss_pred             ccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCC-ccCccccCCCCcceEECCCCcCC
Q 039739          392 LSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG-KIPRWLGNLTRLQHIMMPKNHLE  470 (628)
Q Consensus       392 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~  470 (628)
                      +++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.... ..+..|.++++|++|++++|.+.
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            77777766555566677777777777777765555566667777777777643322 23335666666666666666665


Q ss_pred             CCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhc
Q 039739          471 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD  550 (628)
Q Consensus       471 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  550 (628)
                      .. | .+..+++|+.|++++|++.+..+..                        +..+++|+.|++++|++++..+..|.
T Consensus       199 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~  252 (440)
T 3zyj_A          199 EI-P-NLTPLIKLDELDLSGNHLSAIRPGS------------------------FQGLMHLQKLWMIQSQIQVIERNAFD  252 (440)
T ss_dssp             SC-C-CCTTCSSCCEEECTTSCCCEECTTT------------------------TTTCTTCCEEECTTCCCCEECTTSST
T ss_pred             cc-c-ccCCCcccCEEECCCCccCccChhh------------------------hccCccCCEEECCCCceeEEChhhhc
Confidence            32 2 3556666666666666655443333                        44445555555555555444444455


Q ss_pred             CCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739          551 GLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL  589 (628)
Q Consensus       551 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  589 (628)
                      .+++|+.|+|++|+++...++.|..+++|+.|++++|++
T Consensus       253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            555555555555555533344444455555555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=7.3e-25  Score=216.03  Aligned_cols=235  Identities=20%  Similarity=0.208  Sum_probs=140.4

Q ss_pred             CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739          335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL  414 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  414 (628)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+. ..+..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            356777777777766 55555666667777777776665 555433 34666666666666665 334455566666666


Q ss_pred             EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      ++++|...+.+|..+..      .         .....+.++++|++|++++|.+. ..|..+..+++|++|++++|++.
T Consensus       156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            66666555555544332      0         00112334556666666666555 44555556666666666666555


Q ss_pred             CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCcccc
Q 039739          495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLC  574 (628)
Q Consensus       495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~  574 (628)
                      +..+....+++|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+.
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            32222222444555555555544455544 66677777777777777767777777777777777777777777777777


Q ss_pred             CCCCCcEEECCCCccc
Q 039739          575 KLNQLQLLDLSNNSLH  590 (628)
Q Consensus       575 ~l~~L~~L~l~~~~~~  590 (628)
                      ++++|+.+++..+.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            7777777777655444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.2e-24  Score=223.39  Aligned_cols=246  Identities=22%  Similarity=0.203  Sum_probs=147.0

Q ss_pred             cCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEc
Q 039739          313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL  392 (628)
Q Consensus       313 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  392 (628)
                      ...++.++..++ .+|..+   .++++.|++++|.+.+..+..|..+++|+.|++++|.+. .++...+.++++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence            456666666665 566544   346777777777777666666777777777777777665 444444555667777777


Q ss_pred             cCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCC
Q 039739          393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEG  471 (628)
Q Consensus       393 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~  471 (628)
                      ++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|...+. .+..+.++++|++|++++|.+.+
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            77666655555566666666666666666644444556666666666665433222 22345555555555555555543


Q ss_pred             CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739          472 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG  551 (628)
Q Consensus       472 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  551 (628)
                      . | .+..+++|+.|++++|++.+..                       + ..+..+++|+.|++++|++++..+..|..
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~-----------------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIR-----------------------P-GSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEEC-----------------------G-GGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             c-c-cccccccccEEECcCCcCcccC-----------------------c-ccccCccCCCEEEeCCCcCceECHHHhcC
Confidence            2 1 2445555555555555544322                       2 22566666666666666666555666666


Q ss_pred             CCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739          552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL  589 (628)
Q Consensus       552 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  589 (628)
                      +++|+.|++++|+++...++.|..+++|++|++++|++
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            66666666666666644455566666666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=5.2e-25  Score=215.85  Aligned_cols=282  Identities=22%  Similarity=0.214  Sum_probs=217.1

Q ss_pred             cEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCc--ccccccCCCCccEEEC
Q 039739          290 RQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGS--IPSSFGNMKFLQILDL  367 (628)
Q Consensus       290 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l  367 (628)
                      +.++.++..++... ..  ..+++++|++++|.+. .++...+..+++|+.|++++|.+...  .+..+..+++|+.|++
T Consensus        10 ~~l~c~~~~l~~ip-~~--~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCC-SC--CCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCC-CC--CCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            45677666655422 22  2368999999999998 77776655689999999999998733  3566778999999999


Q ss_pred             cCCcccCccchhhhcCCccccEEEccCCccCCccc-ccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC
Q 039739          368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMF-SRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS  446 (628)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  446 (628)
                      ++|.+. .++.. +..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        86 s~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            999987 56654 4569999999999999887654 56788999999999999998888888999999999999999987


Q ss_pred             C-ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccc
Q 039739          447 G-KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTF  525 (628)
Q Consensus       447 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  525 (628)
                      + ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..                        ...+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~  219 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD------------------------TFPY  219 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC------------------------SGGG
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC------------------------hhhc
Confidence            6 57888999999999999999999877888999999999999999887422                        2225


Q ss_pred             ccCCCccEEECCCcccCCccchhhcCCC-CCcEEECCCCcCCccCC--ccccCCCCCcEEECCCCcccccccccccccc
Q 039739          526 FNSYSLVTLDLSYNRLNGNISDWVDGLS-QLSHLILGHNNLEGEVP--VQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       526 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~--~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~  601 (628)
                      ..+++|+.|++++|.+++..+..+..++ +|+.|++++|+++..-.  ....-+...+.+.+..+.+.-..|+.++..+
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence            5667778888888877777777777774 78888888887763311  1112223344455566666666666666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=4.9e-25  Score=220.58  Aligned_cols=284  Identities=18%  Similarity=0.166  Sum_probs=222.6

Q ss_pred             cCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCcc
Q 039739          260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF  339 (628)
Q Consensus       260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  339 (628)
                      .|+.....+.+++.+. .+|..+   .++|++|+++++.+++.....+..+++|++|++++|.+.+..+..+.. +++|+
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~  103 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLE  103 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCC
T ss_pred             CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCC
Confidence            4555566788887776 667654   368999999999998876668899999999999999998544555554 89999


Q ss_pred             EEEcccccCCCcccccccCCCCccEEECcCCcccCccch-hhhcCCccccEEEccCCc-cCCcccccccCCCCCcEEEcc
Q 039739          340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE-HLVVGCVNLESLALSNNS-LEGHMFSRNFNLTNLRWLQLE  417 (628)
Q Consensus       340 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~  417 (628)
                      .|++++|.+++..+..+..+++|++|++++|++. .++. ..+..+++|++|++++|. +.......+..+++|++|+++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            9999999999665556899999999999999998 6665 567789999999999994 665556778899999999999


Q ss_pred             CccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCccccc---CCCCCCEEEccCCcCc
Q 039739          418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC---QLDWLQILDISDNNIS  494 (628)
Q Consensus       418 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~  494 (628)
                      +|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+.   ..+.++.++++++.+.
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~  262 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT  262 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence            9999988889999999999999999998754444566789999999999999865544332   3455566666555443


Q ss_pred             CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccC
Q 039739          495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEV  569 (628)
Q Consensus       495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~  569 (628)
                      +                  +.+ ..++.. +..+++|+.|++++|+++..++..|+.+++|++|++++|++++..
T Consensus       263 ~------------------~~l-~~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          263 D------------------ESL-FQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             H------------------HHH-HHHHHH-HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             C------------------cch-hhhHHH-HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            2                  111 123433 677889999999999998544444688999999999999988543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=1.9e-24  Score=209.40  Aligned_cols=214  Identities=24%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             CccccEEEccCCccCCcccccccCCCCCcEEEccCcc-CcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceE
Q 039739          384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI  462 (628)
Q Consensus       384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  462 (628)
                      +++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            3333333333333333323333334444444444443 332223334444444444444444443333344444444444


Q ss_pred             ECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCccc
Q 039739          463 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL  541 (628)
Q Consensus       463 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~  541 (628)
                      ++++|.+....+..+..+++|+.|++++|+++...+..+. +++|+.|++++|.+.+..+.. +..+++|+.|++++|.+
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcC
Confidence            4444444433333344444444444444444422222221 333333333333333222222 55556666666666666


Q ss_pred             CCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccc
Q 039739          542 NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN  599 (628)
Q Consensus       542 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~  599 (628)
                      ++..+..+..+++|+.|++++|++...-+. ..-...++.+....+.+....|+.+..
T Consensus       214 ~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          214 SALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             CcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence            655555566666666666666665522211 011122333444555555555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.4e-24  Score=214.08  Aligned_cols=212  Identities=22%  Similarity=0.287  Sum_probs=155.8

Q ss_pred             ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEEC
Q 039739          385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM  464 (628)
Q Consensus       385 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  464 (628)
                      ++++.|++++|.+. ..+..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            44445555554444 22333444555555555555554 44444555555555555555554 44445555555555555


Q ss_pred             CCCcCCCCCccc---------ccCCCCCCEEEccCCcCcCCCCCCC-CCCcccEEecCCCcCcCCCCccccccCCCccEE
Q 039739          465 PKNHLEGPIPVE---------FCQLDWLQILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL  534 (628)
Q Consensus       465 ~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  534 (628)
                      ++|.+.+..|..         +..+++|++|++++|.++ ..|..+ .+++|+.|++++|.+. .++.. +..+++|+.|
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L  234 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEEL  234 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEE
Confidence            555444444444         445999999999999998 555544 4889999999999997 45555 8899999999


Q ss_pred             ECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccccccccc
Q 039739          535 DLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTL  602 (628)
Q Consensus       535 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~  602 (628)
                      ++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+.++++|++|++++|++.+.+|+.+.+++-
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=6.7e-24  Score=205.60  Aligned_cols=227  Identities=23%  Similarity=0.192  Sum_probs=199.9

Q ss_pred             cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739          363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  442 (628)
Q Consensus       363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  442 (628)
                      +.++.++..+. .+|...   .++|++|++++|.++......+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            57778887776 666543   57899999999999887777788999999999999999877788999999999999999


Q ss_pred             Cc-CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCC
Q 039739          443 NS-LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQL  520 (628)
Q Consensus       443 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~  520 (628)
                      |. +....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++....+..+. +++|+.|++++|++. .+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence            97 7766688899999999999999999988888899999999999999999976666554 889999999999996 55


Q ss_pred             CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739          521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip  594 (628)
                      +...+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..++.+..+++|++|++++|++....+
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            55558889999999999999998889999999999999999999997666779999999999999999985433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.3e-26  Score=249.93  Aligned_cols=430  Identities=15%  Similarity=0.116  Sum_probs=286.0

Q ss_pred             CCCCCCEEeCCCCCC-CCccc------------hhhhcccCCCCcEEecCCCCCCCcchhHhhccCCCCceEecccc-cc
Q 039739            3 SFPSLNTLYLSSNNF-TDIAT------------ATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGC-EV   68 (628)
Q Consensus         3 ~l~~L~~L~l~~~~~-~~~~~------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~   68 (628)
                      ++++|++|+++++.. .++..            +......+++|++|++++|.+++..+..+...+++|++|++++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            588999999999853 22211            12335678999999999999998888888744999999999999 44


Q ss_pred             cccccCCCccccCccceeecccchhhcCcchh---hhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccC
Q 039739           69 NGLVRGQGFPHFKSLEHLDMEGALIALNTSFL---QIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAY  145 (628)
Q Consensus        69 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~  145 (628)
                      ........+.++++|++|++++|.  +.+...   ..+...+++|++|++++|. ..-........+..+++|++|++++
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESD--VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCE--EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCc--cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence            432222234589999999999994  333322   2333338899999999886 1100001112235679999999999


Q ss_pred             CcccccCchhhhcCCCCCEEEcccc-------ccccccCCCCCCCCCcccEE-EcccCeeeeecCCCCcCCCCcccEEec
Q 039739          146 NDLRGSLPWCLANMTSLRILDVSSN-------QLTGSISSSPLVHLTSIEEL-YLSNNHFQIPISLEPFFNHSRLKSFYA  217 (628)
Q Consensus       146 ~~~~~~~~~~l~~l~~L~~L~l~~~-------~~~~~l~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~l~~l~~L~~L~l  217 (628)
                      |.....++..+..+++|++|++..+       .+. .++. .+.++++|+.+ .+.....  ......+..+++|++|++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~--~~l~~~~~~~~~L~~L~L  296 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP--AYLPAVYSVCSRLTTLNL  296 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG--GGGGGGHHHHTTCCEEEC
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch--hhHHHHHHhhCCCCEEEc
Confidence            9443357888889999999996554       333 3333 46778888888 3332211  111112235788999999


Q ss_pred             cCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccC---------CcccCcCchhHHhcCcc
Q 039739          218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSH---------IKMNGEFPTWLLENNTK  288 (628)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~  288 (628)
                      ++|.+.+.......  ....+|++|.+. .+.....++.....+++|++|++.+         +.+.+.....+...+++
T Consensus       297 ~~~~l~~~~l~~~~--~~~~~L~~L~l~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~  373 (594)
T 2p1m_B          297 SYATVQSYDLVKLL--CQCPKLQRLWVL-DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK  373 (594)
T ss_dssp             TTCCCCHHHHHHHH--TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred             cCCCCCHHHHHHHH--hcCCCcCEEeCc-CccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence            88886543322111  122478888884 3322222333344689999999843         34444444455566899


Q ss_pred             CcEEEeecCCCCCCCCcccc-cCCccCEEEcc--C----CcCCcccc-----hhhhhhCCCccEEEcccccCCCcccccc
Q 039739          289 LRQLSLVNDSLGGPFQLPIH-SHKRLGMLDIS--N----NNFRGHIP-----VEIGDVLPSLFSLNISMNALDGSIPSSF  356 (628)
Q Consensus       289 L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~i~~~~~-----~~~~~~~~~L~~L~L~~~~~~~~~~~~~  356 (628)
                      |+.|.+..+.+++.....+. .+++|+.|+++  +    +.++ ..|     ..+...+++|+.|++++ .++......+
T Consensus       374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l  451 (594)
T 2p1m_B          374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI  451 (594)
T ss_dssp             CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred             HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence            99998888877664444443 58999999998  3    3444 221     12234588999999977 5555444445


Q ss_pred             cC-CCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccc-cccCCCCCcEEEccCccCcCcccccc-cCCC
Q 039739          357 GN-MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFS-RNFNLTNLRWLQLEGNHFVGEIPQSL-SKCF  433 (628)
Q Consensus       357 ~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~  433 (628)
                      .. +++|+.|++++|.+++.....+..++++|++|++++|.+++.... ....+++|+.|++++|+++......+ ..++
T Consensus       452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp  531 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP  531 (594)
T ss_dssp             HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred             HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence            44 889999999999887555555556689999999999998654443 33468999999999998864433334 4577


Q ss_pred             cccEEEccCCc
Q 039739          434 VLEGLFLNNNS  444 (628)
Q Consensus       434 ~L~~L~l~~~~  444 (628)
                      .++...+..+.
T Consensus       532 ~l~i~~~~~~~  542 (594)
T 2p1m_B          532 KLNVEVIDERG  542 (594)
T ss_dssp             TEEEEEECSSS
T ss_pred             CCEEEEecCCC
Confidence            88776666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=2e-23  Score=215.37  Aligned_cols=247  Identities=24%  Similarity=0.217  Sum_probs=199.7

Q ss_pred             cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739          288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL  367 (628)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  367 (628)
                      ....++..+..++. .+..+  .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|+.|++
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            35667766665553 22222  36899999999999844444554 4899999999999999777788999999999999


Q ss_pred             cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCc-ccccccCCCcccEEEccCCcCC
Q 039739          368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE-IPQSLSKCFVLEGLFLNNNSLS  446 (628)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  446 (628)
                      ++|++. .++...+..+++|++|++++|.+.......+..+++|+.|++++|...+. .+..+..+++|++|++++|.+.
T Consensus       120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            999998 77777778899999999999999887777888999999999999654434 4457889999999999999997


Q ss_pred             CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCcccc
Q 039739          447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTF  525 (628)
Q Consensus       447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~  525 (628)
                       .++ .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..+. +++|+.|++++|+++ .++...+
T Consensus       199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~  275 (440)
T 3zyj_A          199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF  275 (440)
T ss_dssp             -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTT
T ss_pred             -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHh
Confidence             444 488899999999999999988888999999999999999999876665554 677777777777775 4444446


Q ss_pred             ccCCCccEEECCCcccC
Q 039739          526 FNSYSLVTLDLSYNRLN  542 (628)
Q Consensus       526 ~~~~~L~~L~l~~~~~~  542 (628)
                      ..+++|+.|++++|.+.
T Consensus       276 ~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SSCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEcCCCCcc
Confidence            67777777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=2e-23  Score=216.09  Aligned_cols=247  Identities=23%  Similarity=0.211  Sum_probs=200.2

Q ss_pred             cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739          288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL  367 (628)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  367 (628)
                      ....++..+..++. .+..  -.+.++.|++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQG--IPSNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSC--CCTTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCc-cCCC--CCCCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            34566766665554 2222  2368999999999998555555554 899999999999999877788999999999999


Q ss_pred             cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcc-cccccCCCcccEEEccCCcCC
Q 039739          368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEI-PQSLSKCFVLEGLFLNNNSLS  446 (628)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  446 (628)
                      ++|.+. .++...+..+++|++|++++|.+.......+..+++|+.|++++|...+.+ +..+..+++|++|++++|.+.
T Consensus       131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            999998 777777888999999999999998777778889999999999996554444 456889999999999999997


Q ss_pred             CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCcccc
Q 039739          447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTF  525 (628)
Q Consensus       447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~  525 (628)
                      +. + .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++....+..+. +++|+.|++++|+++ .++...+
T Consensus       210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~  286 (452)
T 3zyi_A          210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF  286 (452)
T ss_dssp             SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSS
T ss_pred             cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHh
Confidence            43 3 588899999999999999988899999999999999999999876665554 667777777777775 4444446


Q ss_pred             ccCCCccEEECCCcccC
Q 039739          526 FNSYSLVTLDLSYNRLN  542 (628)
Q Consensus       526 ~~~~~L~~L~l~~~~~~  542 (628)
                      ..+++|+.|++++|.+.
T Consensus       287 ~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEccCCCcC
Confidence            66777777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=9.3e-23  Score=216.10  Aligned_cols=274  Identities=26%  Similarity=0.273  Sum_probs=188.5

Q ss_pred             cCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEEC
Q 039739          288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDL  367 (628)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  367 (628)
                      +++.|+++++.++. .+..+.  ++|++|++++|.++ .+|.    .+++|+.|++++|.++ .+|.   .+++|+.|++
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            45566666555552 222222  56666666666665 4554    2566777777777666 3343   4567777777


Q ss_pred             cCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCC
Q 039739          368 SNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG  447 (628)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  447 (628)
                      ++|.+. .++.    .+++|+.|++++|.++....    .+++|+.|++++|.+.+ +|.   .+++|+.|++++|.+..
T Consensus       109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             CSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             cCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            777665 4444    35677777777776654221    24677777777777663 332   24567777777777763


Q ss_pred             ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739          448 KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN  527 (628)
Q Consensus       448 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  527 (628)
                       ++   ..+++|+.|++++|.+.+ .|.   .+++|+.|++++|.+.. .+..  +++|+.|++++|.+++ ++    ..
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~--~~~L~~L~Ls~N~L~~-lp----~~  239 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLTS-LP----VL  239 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSC-CC----CC
T ss_pred             -Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC--CCCCCEEEccCCccCc-CC----CC
Confidence             33   446778888888887774 232   24678888888887773 3332  4778888888888863 54    33


Q ss_pred             CCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccccccccc
Q 039739          528 SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYN  607 (628)
Q Consensus       528 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~~~~  607 (628)
                      +++|+.|++++|+++. +|.   .+++|+.|++++|+++ .+|..+.++++|+.|++++|++++.+|+.+..++....+.
T Consensus       240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~  314 (622)
T 3g06_A          240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS  314 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHSTTCC
T ss_pred             CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccccccC
Confidence            5789999999999984 444   6789999999999999 7899999999999999999999999999999887554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2e-25  Score=219.51  Aligned_cols=266  Identities=18%  Similarity=0.173  Sum_probs=184.0

Q ss_pred             cCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEc
Q 039739          313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL  392 (628)
Q Consensus       313 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  392 (628)
                      ++..+++.+.+. ..+..+...+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .+.  +..+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEEC
Confidence            334444444443 3333444446678888888887776666677778888888888887763 332  556778888888


Q ss_pred             cCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC
Q 039739          393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP  472 (628)
Q Consensus       393 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  472 (628)
                      ++|.+++..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            877765422     347788888888877654332   356788888888888766666777788888888888887765


Q ss_pred             Ccccc-cCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739          473 IPVEF-CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG  551 (628)
Q Consensus       473 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  551 (628)
                      .+..+ ..+++|++|++++|.+++. +....+++|+.|++++|++. .++.. +..+++|+.|++++|.++ .+|..+..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCC-cchhh-hcccCcccEEECcCCccc-chhhHhhc
Confidence            55555 3678888888888887744 33334677777777777775 44444 677788888888888887 45667778


Q ss_pred             CCCCcEEECCCCcCC-ccCCccccCCCCCcEEECCCC-ccccccc
Q 039739          552 LSQLSHLILGHNNLE-GEVPVQLCKLNQLQLLDLSNN-SLHGSIP  594 (628)
Q Consensus       552 l~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~~-~~~~~ip  594 (628)
                      +++|+.|++++|++. +..|..+..+++|+.+++.++ .+.+..|
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            888888888888887 666777888888888888744 3343333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=7.1e-25  Score=215.03  Aligned_cols=249  Identities=24%  Similarity=0.209  Sum_probs=145.6

Q ss_pred             cCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCC-Cccccccc-------CCCCccEEECcCCcccCccchhh
Q 039739          309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALD-GSIPSSFG-------NMKFLQILDLSNNHLTGEIPEHL  380 (628)
Q Consensus       309 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~  380 (628)
                      ..++|+.+++++|.+  .+|..+...   ++.|++++|.+. ...+..+.       .+++|++|++++|.+.+.++...
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            345566666666666  556555442   666666666653 22333332       45666666666666665555443


Q ss_pred             h-cCCccccEEEccCCccCCcccccccCC-----CCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc--cCcc
Q 039739          381 V-VGCVNLESLALSNNSLEGHMFSRNFNL-----TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK--IPRW  452 (628)
Q Consensus       381 ~-~~~~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~  452 (628)
                      + ..+++|++|++++|.+++. +..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            2 4566666666666666554 3334333     6667777776666655556666666677777766665432  1222


Q ss_pred             c--cCCCCcceEECCCCcCCCCC---cccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739          453 L--GNLTRLQHIMMPKNHLEGPI---PVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN  527 (628)
Q Consensus       453 ~--~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  527 (628)
                      +  ..+++|++|++++|.+....   ...+..+++|+.|++++|++.+.                       .+...+..
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~~  251 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA-----------------------AGAPSCDW  251 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-----------------------CCCSCCCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc-----------------------cchhhhhh
Confidence            2  56666777777776665211   12234566666666666666543                       22222444


Q ss_pred             CCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739          528 SYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       528 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  591 (628)
                      +++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|. +..+++|++|++++|++++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCCCCC
Confidence            566777777777666 4455444  667777777777763 355 6677777777777777663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=4e-24  Score=210.20  Aligned_cols=248  Identities=23%  Similarity=0.172  Sum_probs=204.4

Q ss_pred             ccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEcc
Q 039739          338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE  417 (628)
Q Consensus       338 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  417 (628)
                      ++..++..+.+.......+..+++|+.|++++|.+. .++...+..+++|++|++++|.+++...  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            344455555554444455667789999999999998 5665556779999999999999876443  7889999999999


Q ss_pred             CccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCC
Q 039739          418 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL  497 (628)
Q Consensus       418 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  497 (628)
                      +|.+.+.     ...++|++|++++|.+.+..+.   .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus        89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            9998742     2448999999999999855443   3688999999999999887888999999999999999998766


Q ss_pred             CCCC--CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccC
Q 039739          498 PSCF--HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCK  575 (628)
Q Consensus       498 ~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~  575 (628)
                      +..+  .+++|+.|++++|.+.+. +.  ...+++|+.|++++|++++. +..+..+++|+.|++++|+++ .+|..+..
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-cc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence            6554  378999999999999643 33  33589999999999999954 455999999999999999999 78999999


Q ss_pred             CCCCcEEECCCCccc-ccccccccccc
Q 039739          576 LNQLQLLDLSNNSLH-GSIPLCLDNTT  601 (628)
Q Consensus       576 l~~L~~L~l~~~~~~-~~ip~~~~~~~  601 (628)
                      +++|+.|++++|++. +.+|..+.+++
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccc
Confidence            999999999999999 77888777643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=6.5e-23  Score=213.23  Aligned_cols=235  Identities=20%  Similarity=0.169  Sum_probs=151.3

Q ss_pred             CCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEE
Q 039739          336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ  415 (628)
Q Consensus       336 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  415 (628)
                      ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+   +..+++|++|++++|.+++..     ..++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            367778887777776666677777788888888777763333   455777777777777765422     237778888


Q ss_pred             ccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCccccc-CCCCCCEEEccCCcCc
Q 039739          416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNIS  494 (628)
Q Consensus       416 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~  494 (628)
                      +++|.+.+..+.   .+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888777654332   346778888888877766677777778888888888877766666665 6778888888887776


Q ss_pred             CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC-ccCCccc
Q 039739          495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE-GEVPVQL  573 (628)
Q Consensus       495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~l  573 (628)
                      +. +....+++|+.|++++|.+++ +++. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +..|..+
T Consensus       183 ~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DV-KGQVVFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EE-ECCCCCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cc-cccccCCCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            43 222235555555555555542 3333 5555666666666666553 4445555566666666666555 3445555


Q ss_pred             cCCCCCcEEECC
Q 039739          574 CKLNQLQLLDLS  585 (628)
Q Consensus       574 ~~l~~L~~L~l~  585 (628)
                      ..++.|+.+++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            555555555553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=1.2e-21  Score=207.63  Aligned_cols=269  Identities=23%  Similarity=0.288  Sum_probs=209.0

Q ss_pred             CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739          262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL  341 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  341 (628)
                      .+++.|+++++.+. .+|..+.   ++|+.|++++|.++....    .+++|++|++++|.++ .+|.    .+++|+.|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence            35788888888877 6665542   788889998888774322    5688999999999887 5665    36889999


Q ss_pred             EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739          342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF  421 (628)
Q Consensus       342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  421 (628)
                      ++++|.+++ +|.   .+++|+.|++++|+++ .++.    .+++|++|++++|.+++.. .   .+++|+.|++++|.+
T Consensus       107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQL  173 (622)
T ss_dssp             EECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCC
T ss_pred             ECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCC
Confidence            999998884 443   5678999999999887 5664    2588999999999887532 1   357899999999988


Q ss_pred             cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739          422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  501 (628)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  501 (628)
                      ++ +|   ..+++|++|++++|.+.+ ++.   ..++|+.|++++|.+.. .|.   .+++|+.|++++|++++ .|  .
T Consensus       174 ~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp--~  238 (622)
T 3g06_A          174 TS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP--V  238 (622)
T ss_dssp             SC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC--C
T ss_pred             CC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC--C
Confidence            74 45   456889999999998874 333   24789999999998884 332   35889999999998885 44  3


Q ss_pred             CCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCC
Q 039739          502 HPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN  577 (628)
Q Consensus       502 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~  577 (628)
                      .+++|+.|++++|.++ .++.    .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus       239 ~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          239 LPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            4688999999999986 5554    4688999999999998 6688899999999999999999988887766544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.5e-21  Score=185.64  Aligned_cols=201  Identities=26%  Similarity=0.296  Sum_probs=104.7

Q ss_pred             ccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEcc
Q 039739          362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  441 (628)
Q Consensus       362 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  441 (628)
                      .+.++++++.++ .+|..+   .+++++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            444555555444 344322   2445555555555554444445555555566655555554333444555566666666


Q ss_pred             CCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCC
Q 039739          442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLK  521 (628)
Q Consensus       442 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  521 (628)
                      +|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|.+....                        
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------------------  149 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP------------------------  149 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC------------------------
Confidence            65555444445555666666666666665555555556666666666666554322                        


Q ss_pred             ccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739          522 RGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       522 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      ...+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|++.
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            222444455555555555555444444555555555555555555333334555555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=1e-21  Score=189.27  Aligned_cols=208  Identities=24%  Similarity=0.195  Sum_probs=121.7

Q ss_pred             CCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEE
Q 039739          360 KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLF  439 (628)
Q Consensus       360 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  439 (628)
                      ++|+.|++++|.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            35666666666655 44433344456666666666655544444555556666666666655544445555555666666


Q ss_pred             ccCCcCCCccCccccCCCCcceEECCCCcCCCC-CcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcC
Q 039739          440 LNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP-IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHG  518 (628)
Q Consensus       440 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  518 (628)
                      +++|.+.+..+..+.++++|++|++++|.+... .|..+..+++|+.|++++|++++                       
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-----------------------  163 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----------------------  163 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-----------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-----------------------
Confidence            665555544444455555555555555555532 24455555555555555555442                       


Q ss_pred             CCCccccccCCCcc----EEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccc
Q 039739          519 QLKRGTFFNSYSLV----TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSI  593 (628)
Q Consensus       519 ~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~i  593 (628)
                       ++...+..+++|+    .|++++|.+++..+..+. ..+|+.|++++|++++..+..|..+++|++|++++|++....
T Consensus       164 -~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          164 -IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             -ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             -CCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence             2222244444454    778888877754444443 347888888888887554555677888888888888887543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.2e-21  Score=187.89  Aligned_cols=213  Identities=23%  Similarity=0.234  Sum_probs=131.0

Q ss_pred             cCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCccc
Q 039739          357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLE  436 (628)
Q Consensus       357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  436 (628)
                      ..+++|+.|+++++.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34455666666655554 3332  23355555555555555431  2344455555555555555443344444445555


Q ss_pred             EEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739          437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML  516 (628)
Q Consensus       437 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  516 (628)
                      +|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+                       ++|+.|++++|++
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----------------------~~L~~L~l~~n~l  169 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-----------------------TNLTELDLSYNQL  169 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------------------TTCCEEECCSSCC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-----------------------ccCCEEECCCCCc
Confidence            55555554443333344444444444444444443333334444                       4555555555555


Q ss_pred             cCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccccc
Q 039739          517 HGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLC  596 (628)
Q Consensus       517 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~  596 (628)
                      + .++...+..+++|+.|++++|++++.++..+..+++|+.|++++|++.+       .+++|+.+++++|+++|.+|..
T Consensus       170 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          170 Q-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             C-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            4 3344447788999999999999998888888999999999999998873       3568899999999999999999


Q ss_pred             ccccccccc
Q 039739          597 LDNTTLHES  605 (628)
Q Consensus       597 ~~~~~~~~~  605 (628)
                      +.++.-...
T Consensus       242 ~~~~~~~~~  250 (272)
T 3rfs_A          242 AGSVAPDSA  250 (272)
T ss_dssp             TSCBCGGGS
T ss_pred             ccccCCCCC
Confidence            998764433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.4e-22  Score=210.61  Aligned_cols=236  Identities=20%  Similarity=0.187  Sum_probs=165.0

Q ss_pred             CCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739          310 HKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES  389 (628)
Q Consensus       310 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  389 (628)
                      +++|++|++++|.+.+..|..+.. +++|+.|++++|.+++..|  +..+++|+.|++++|.+. .++.     .++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTT-CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhC-CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence            345666666666665433334433 6666666666666654333  666677777777777665 3332     367777


Q ss_pred             EEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCcccc-CCCCcceEECCCCc
Q 039739          390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLG-NLTRLQHIMMPKNH  468 (628)
Q Consensus       390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~  468 (628)
                      |++++|.+.+....   .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            77777777654332   356777777777777766666777777788888888777766666654 67788888888887


Q ss_pred             CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccC-Cccch
Q 039739          469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN-GNISD  547 (628)
Q Consensus       469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~  547 (628)
                      +.+..  .+..+++|+.|++++|.+++..+....+++|+.|++++|.++ .+|.. +..+++|+.|++++|.+. +.+|.
T Consensus       181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             ccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hccCCCCCEEEcCCCCCcCcchHH
Confidence            76442  244578888888888888766555445778888888888886 45655 788899999999999987 56778


Q ss_pred             hhcCCCCCcEEECC
Q 039739          548 WVDGLSQLSHLILG  561 (628)
Q Consensus       548 ~~~~l~~L~~L~l~  561 (628)
                      .+..++.|+.++++
T Consensus       257 ~~~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhCCCCcEEecc
Confidence            88989999888886

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=6.8e-23  Score=200.94  Aligned_cols=246  Identities=22%  Similarity=0.215  Sum_probs=174.4

Q ss_pred             CccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCC-cccchhhh------hhCCCccEEEcccccCCCcccccc--
Q 039739          286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFR-GHIPVEIG------DVLPSLFSLNISMNALDGSIPSSF--  356 (628)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~------~~~~~L~~L~L~~~~~~~~~~~~~--  356 (628)
                      .++|+.+++.++.+  ..+..+...  ++.|+++++.+. ..++....      ..+++|++|++++|.+++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34455555555554  222222222  666666666652 23444443      137899999999999998888765  


Q ss_pred             cCCCCccEEECcCCcccCccchhhhcCC-----ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCc--ccccc
Q 039739          357 GNMKFLQILDLSNNHLTGEIPEHLVVGC-----VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE--IPQSL  429 (628)
Q Consensus       357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~  429 (628)
                      ..+++|+.|++++|.+.+. +.. +..+     ++|++|++++|.+.+..+..++.+++|++|++++|.+.+.  .+..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            8899999999999999844 533 3334     8999999999999888778889999999999999987654  23333


Q ss_pred             --cCCCcccEEEccCCcCCCc---cCccccCCCCcceEECCCCcCCCCCc-ccccCCCCCCEEEccCCcCcCCCCCCCCC
Q 039739          430 --SKCFVLEGLFLNNNSLSGK---IPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFHP  503 (628)
Q Consensus       430 --~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  503 (628)
                        ..+++|++|++++|.+.+.   ....+.++++|++|++++|.+.+..| ..+..+++|++|++++|+++ .+|..+  
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~--  272 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--  272 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC--
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc--
Confidence              7899999999999998732   22445688999999999999987664 44667889999999998877 333222  


Q ss_pred             CcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          504 LSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       504 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                                            .  ++|+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus       273 ----------------------~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          273 ----------------------P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             ----------------------C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             ----------------------c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence                                  1  4666666666666644 33 666666666666666665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=5.7e-21  Score=184.53  Aligned_cols=202  Identities=23%  Similarity=0.175  Sum_probs=116.7

Q ss_pred             ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739          356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL  435 (628)
Q Consensus       356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  435 (628)
                      +..+++++.++++++.++ .+|..+   .+.++.|++++|.++...+..+..+++|+.|++++|.+++..+  ...+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            344556666666666665 555433   3566666666666665555556666667777777666653222  2556667


Q ss_pred             cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCC
Q 039739          436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKN  514 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n  514 (628)
                      ++|++++|.+. .++..+.++++|++|++++|.++...+..|..+++|+.|++++|++....+..+. +++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            77777766665 4555566667777777777776655556666677777777777766643333332 344444444444


Q ss_pred             cCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       515 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      ++. .++...+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            443 333333455555555555555555 34444445555555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=3.5e-21  Score=185.43  Aligned_cols=221  Identities=24%  Similarity=0.287  Sum_probs=162.0

Q ss_pred             EEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCC
Q 039739          316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN  395 (628)
Q Consensus       316 L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  395 (628)
                      ++..+..+. .+|..+   .++++.|++++|.+++..+..+..+++|+.|++++|.+. .++...+..+++|++|++++|
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            333344444 555543   347888888888888666667888888999999988887 666555667889999999999


Q ss_pred             ccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc-cCccccCCCCcceEECCCCcCCCCCc
Q 039739          396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK-IPRWLGNLTRLQHIMMPKNHLEGPIP  474 (628)
Q Consensus       396 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~  474 (628)
                      .+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+.++++|++|++++|.+.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            88877767788889999999999988866666788899999999999988753 57889999999999999999987766


Q ss_pred             ccccCCCCCC----EEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhc
Q 039739          475 VEFCQLDWLQ----ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD  550 (628)
Q Consensus       475 ~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  550 (628)
                      ..+..+++|+    .|++++|++.+..+..+...                         +|+.|++++|.+++.++..+.
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-------------------------~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-------------------------RLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-------------------------CEEEEECCSSCCSCCCTTTTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccCCC-------------------------cccEEECCCCceeecCHhHhc
Confidence            6676666666    78888887764433333322                         566666666666554444555


Q ss_pred             CCCCCcEEECCCCcCC
Q 039739          551 GLSQLSHLILGHNNLE  566 (628)
Q Consensus       551 ~l~~L~~L~l~~~~i~  566 (628)
                      .+++|+.|++++|+++
T Consensus       222 ~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TCCSCCEEECCSSCBC
T ss_pred             ccccccEEEccCCccc
Confidence            6666666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.1e-20  Score=181.04  Aligned_cols=202  Identities=26%  Similarity=0.265  Sum_probs=116.6

Q ss_pred             CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEc
Q 039739          337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL  416 (628)
Q Consensus       337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  416 (628)
                      ..+.++++++.++ .+|..+.  ++++.|++++|.+. .++...+.++++|++|++++|.++......+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            3444555554444 2333221  34555555555554 344333444555555555555555444444455666666666


Q ss_pred             cCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739          417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS  496 (628)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  496 (628)
                      ++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|++...
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            66666544445556666667777766666655556667777777777777777755555577777777777777766532


Q ss_pred             CCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       497 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      .                        ...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       173 ~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          173 P------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             C------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C------------------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            2                        222444555666666666655544445555666666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=7.3e-21  Score=182.46  Aligned_cols=158  Identities=23%  Similarity=0.198  Sum_probs=113.1

Q ss_pred             CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739          335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL  414 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  414 (628)
                      +++++.|++.+|.+.. + ..+..+++|+.|++++|.+. .++  .+..+++|++|++++|.+++.....+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            5677777777776652 2 23666777777777777765 333  24457777777777777776666666777788888


Q ss_pred             EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      ++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            88888777666666777788888888888777666666777888888888888887666666777888888888887776


Q ss_pred             CCC
Q 039739          495 GSL  497 (628)
Q Consensus       495 ~~~  497 (628)
                      +..
T Consensus       195 ~~~  197 (272)
T 3rfs_A          195 SVP  197 (272)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=4.4e-22  Score=199.57  Aligned_cols=253  Identities=20%  Similarity=0.181  Sum_probs=152.7

Q ss_pred             EEEccCCcCCcccchhhhhhCCCccEEEcccccCCCccc----ccccCCC-CccEEECcCCcccCccchhhhc---C-Cc
Q 039739          315 MLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIP----SSFGNMK-FLQILDLSNNHLTGEIPEHLVV---G-CV  385 (628)
Q Consensus       315 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~---~-~~  385 (628)
                      .++++.+.+.+.+|... ...++|+.|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..   . ++
T Consensus         2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            35677787776555443 335568888888888876555    6677777 8888888888887443433222   1 27


Q ss_pred             cccEEEccCCccCCccccccc----CC-CCCcEEEccCccCcCcccccc----cC-CCcccEEEccCCcCCCccC----c
Q 039739          386 NLESLALSNNSLEGHMFSRNF----NL-TNLRWLQLEGNHFVGEIPQSL----SK-CFVLEGLFLNNNSLSGKIP----R  451 (628)
Q Consensus       386 ~L~~L~l~~~~l~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~  451 (628)
                      +|++|++++|.+++.....+.    .+ ++|++|++++|.+.+..+..+    .. +++|++|++++|.+.+...    .
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            888888888888765544333    33 788888888888775544333    33 3588888888887764332    3


Q ss_pred             cccCCC-CcceEECCCCcCCCCCccc----ccCC-CCCCEEEccCCcCcCCCCCCC----C--CCcccEEecCCCcCcCC
Q 039739          452 WLGNLT-RLQHIMMPKNHLEGPIPVE----FCQL-DWLQILDISDNNISGSLPSCF----H--PLSVEQVHLSKNMLHGQ  519 (628)
Q Consensus       452 ~~~~~~-~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~----~--~~~L~~L~l~~n~~~~~  519 (628)
                      .+...+ +|++|++++|.+++..+..    +..+ ++|+.|++++|.+.+.....+    .  +++|+.|++++|.+.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            334454 7888888888877655543    3344 478888888887765322211    1  23566666666655432


Q ss_pred             CC---ccccccCCCccEEECCCcccCCc-------cchhhcCCCCCcEEECCCCcCCcc
Q 039739          520 LK---RGTFFNSYSLVTLDLSYNRLNGN-------ISDWVDGLSQLSHLILGHNNLEGE  568 (628)
Q Consensus       520 ~~---~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~i~~~  568 (628)
                      ..   ...+..+++|+.|++++|.+...       ++..+..+++|+.|++++|++...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            11   11134445566666655553222       122334455555555555555533

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=6.9e-20  Score=176.93  Aligned_cols=203  Identities=21%  Similarity=0.170  Sum_probs=116.2

Q ss_pred             cccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcc
Q 039739          307 IHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVN  386 (628)
Q Consensus       307 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  386 (628)
                      +..++++++++++++.++ .+|..+   .+.++.|++++|.+.+..+..+..+++|+.|++++|.+. .++..       
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-------   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-------   73 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-------
Confidence            345556666666666555 454433   245566666666655444455555555555555555554 22221       


Q ss_pred             ccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739          387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK  466 (628)
Q Consensus       387 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  466 (628)
                                         ..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..|.++++|++|++++
T Consensus        74 -------------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           74 -------------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (290)
T ss_dssp             -------------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             -------------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence                               33445555555555544 3444445555555555555555544445555566666666666


Q ss_pred             CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739          467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG  543 (628)
Q Consensus       467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  543 (628)
                      |.+....+..|..+++|+.|++++|+++...+..+. +++|+.|++++|++. .+|.. +...++|+.|++++|.+..
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred             CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCccC
Confidence            666555444555666666666666666544444433 556666666666664 56665 5556799999999998763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.7e-21  Score=193.67  Aligned_cols=264  Identities=19%  Similarity=0.205  Sum_probs=183.5

Q ss_pred             ccCEEEccCCcCCcccchhhhhhC--CCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE
Q 039739          312 RLGMLDISNNNFRGHIPVEIGDVL--PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES  389 (628)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  389 (628)
                      .++.++++++.+.   +..+.. +  +.++.+++.+|.+.+..+. +..+++|+.|++++|.+.+......+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3677888877665   233332 3  7889999998888865554 5568889999999888764323334556888888


Q ss_pred             EEccCCccCCcccccccCCCCCcEEEccCc-cCcCc-ccccccCCCcccEEEccCC-cCCCc-cCccccCCC-CcceEEC
Q 039739          390 LALSNNSLEGHMFSRNFNLTNLRWLQLEGN-HFVGE-IPQSLSKCFVLEGLFLNNN-SLSGK-IPRWLGNLT-RLQHIMM  464 (628)
Q Consensus       390 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l  464 (628)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. .+..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            888888877666667777888888888888 55542 5556777888888888888 77643 455677777 8888888


Q ss_pred             CCCc--CC-CCCcccccCCCCCCEEEccCCc-CcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcc
Q 039739          465 PKNH--LE-GPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR  540 (628)
Q Consensus       465 ~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~  540 (628)
                      ++|.  ++ ...+..+..+++|+.|++++|. +++                       ..+.. +..+++|+.|++++|.
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----------------------~~~~~-l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----------------------DCFQE-FFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----------------------GGGGG-GGGCTTCCEEECTTCT
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-----------------------HHHHH-HhCCCCCCEeeCCCCC
Confidence            8873  43 2334456677777777777776 332                       22222 6677899999999985


Q ss_pred             -cCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccccccccc
Q 039739          541 -LNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYN  607 (628)
Q Consensus       541 -~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~~~~  607 (628)
                       +.......+..+++|+.|++++| ++......+.  .+++.|++++|++++..|+.+.+-.....|.
T Consensus       259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~~~~~~i~g  323 (336)
T 2ast_B          259 DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWG  323 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSSTTCCCBTT
T ss_pred             CCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccccccceeec
Confidence             43333346788999999999999 6533333332  2356666899999999998888743333444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=2.2e-21  Score=194.44  Aligned_cols=251  Identities=20%  Similarity=0.184  Sum_probs=109.6

Q ss_pred             EeecCCCCCCCCcccccCCccCEEEccCCcCCcccc----hhhhhhCC-CccEEEcccccCCCcccccccCC-----CCc
Q 039739          293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIP----VEIGDVLP-SLFSLNISMNALDGSIPSSFGNM-----KFL  362 (628)
Q Consensus       293 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~-----~~L  362 (628)
                      .++.+.+.+..+..+...++|++|++++|.+.+..+    ..+. .++ +|++|++++|.+++..+..+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            344444444333333334445555555555543322    1222 234 55555555555554433333332     555


Q ss_pred             cEEECcCCcccCccchhh---hcCC-ccccEEEccCCccCCccccccc----C-CCCCcEEEccCccCcCcc----cccc
Q 039739          363 QILDLSNNHLTGEIPEHL---VVGC-VNLESLALSNNSLEGHMFSRNF----N-LTNLRWLQLEGNHFVGEI----PQSL  429 (628)
Q Consensus       363 ~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~l~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~----~~~~  429 (628)
                      ++|++++|.+.+..+..+   +..+ ++|++|++++|.+++.....+.    . .++|++|++++|.+.+..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            555555555543222211   1122 4555555555555443332221    2 235555555555554321    2222


Q ss_pred             cCCC-cccEEEccCCcCCCccCc----cccCC-CCcceEECCCCcCCCCC----cccccC-CCCCCEEEccCCcCcCCCC
Q 039739          430 SKCF-VLEGLFLNNNSLSGKIPR----WLGNL-TRLQHIMMPKNHLEGPI----PVEFCQ-LDWLQILDISDNNISGSLP  498 (628)
Q Consensus       430 ~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~l~~-l~~L~~L~l~~~~~~~~~~  498 (628)
                      ...+ +|++|++++|.+.+..+.    .+..+ ++|++|++++|.+.+..    +..+.. .++|++|++++|++.+..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3333 555555555555433332    22233 35555555555554322    222222 2355555555555544322


Q ss_pred             CC-----CCCCcccEEecCCCcCcCCCCc------cccccCCCccEEECCCcccCCc
Q 039739          499 SC-----FHPLSVEQVHLSKNMLHGQLKR------GTFFNSYSLVTLDLSYNRLNGN  544 (628)
Q Consensus       499 ~~-----~~~~~L~~L~l~~n~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~  544 (628)
                      ..     ...++|+.|++++|.+.+..+.      ..+..+++|+.|++++|.+...
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            11     1144555555555552211000      1134445555555555555433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=7e-20  Score=172.15  Aligned_cols=196  Identities=19%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             cccEEEccCCccCCcccccccCCCCCcEEEccCcc-CcCcccccccCCCcccEEEccC-CcCCCccCccccCCCCcceEE
Q 039739          386 NLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNN-NSLSGKIPRWLGNLTRLQHIM  463 (628)
Q Consensus       386 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  463 (628)
                      ++++|++++|.++......+..+++|++|++++|. +....+..+..+++|++|++++ |.+....+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44455555554444333344445555555555554 4433333455555555555555 455434444555555555555


Q ss_pred             CCCCcCCCCCcccccCCCCCC---EEEccCC-cCcCCCCCCCC-CCccc-EEecCCCcCcCCCCccccccCCCccEEECC
Q 039739          464 MPKNHLEGPIPVEFCQLDWLQ---ILDISDN-NISGSLPSCFH-PLSVE-QVHLSKNMLHGQLKRGTFFNSYSLVTLDLS  537 (628)
Q Consensus       464 l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~-~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  537 (628)
                      +++|.+.+ .|. +..+++|+   .|++++| .+....+..+. +++|+ .|++++|++. .++..++.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence            55555553 232 55555555   6666666 55544333332 45555 5556555554 555554554 678888888


Q ss_pred             Ccc-cCCccchhhcCC-CCCcEEECCCCcCCccCCccccCCCCCcEEECCCCc
Q 039739          538 YNR-LNGNISDWVDGL-SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS  588 (628)
Q Consensus       538 ~~~-~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~  588 (628)
                      +|+ ++...+..|..+ ++|+.|++++|+++ .+|..  .+++|+.|++.++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            884 775556677777 78888888888887 45544  56777888877663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=2.9e-19  Score=174.38  Aligned_cols=194  Identities=20%  Similarity=0.229  Sum_probs=126.9

Q ss_pred             ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739          356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL  435 (628)
Q Consensus       356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  435 (628)
                      ...+++|+.|+++++.+. .++.  +..+++|++|++++|.+.+...  +..+++|+.|++++|.+.+. + .+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCC
Confidence            345677888888888776 4553  4457888888888887766443  67778888888888877642 3 56777788


Q ss_pred             cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCc
Q 039739          436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNM  515 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  515 (628)
                      ++|++++|.+.+. + .+..+++|++|++++|.+.+..+  +..+++|+.|++++|++.+..+ ...+++|+.|++++|.
T Consensus       110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence            8888888877643 2 37777788888888887775433  6677777777777777764322 3335566666666666


Q ss_pred             CcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          516 LHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       516 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      +.+ ++.  +..+++|+.|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       185 l~~-~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          185 ISD-ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCC-CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             cCc-Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            542 222  4555666666666666554332  555666666666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.1e-21  Score=198.94  Aligned_cols=247  Identities=20%  Similarity=0.214  Sum_probs=151.8

Q ss_pred             cchhhhhhCCCccEEEcccccCCCcc----cccccCCCCccEEECcCCccc---Cccchhh------hcCCccccEEEcc
Q 039739          327 IPVEIGDVLPSLFSLNISMNALDGSI----PSSFGNMKFLQILDLSNNHLT---GEIPEHL------VVGCVNLESLALS  393 (628)
Q Consensus       327 ~~~~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~  393 (628)
                      ++..+.. +++|+.|++++|.+....    +..+..+++|+.|++++|.+.   +.+|..+      +..+++|++|+++
T Consensus        24 l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            4444443 678888888888877543    334667888888888876443   2233222      2346777777777


Q ss_pred             CCccCCc----ccccccCCCCCcEEEccCccCcCccccc----ccCC---------CcccEEEccCCcCCC-ccC---cc
Q 039739          394 NNSLEGH----MFSRNFNLTNLRWLQLEGNHFVGEIPQS----LSKC---------FVLEGLFLNNNSLSG-KIP---RW  452 (628)
Q Consensus       394 ~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~-~~~---~~  452 (628)
                      +|.+...    .+..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.+.. ..+   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            7776652    3334456667777777777664332222    2222         566666666666542 222   24


Q ss_pred             ccCCCCcceEECCCCcCCC-----CCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc
Q 039739          453 LGNLTRLQHIMMPKNHLEG-----PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN  527 (628)
Q Consensus       453 ~~~~~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  527 (628)
                      +..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++...                   ...++.. +..
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~~-l~~  242 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAIA-LKS  242 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHHH-GGG
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHHH-Hcc
Confidence            4455566666666665542     11224455555555555555543110                   0234443 677


Q ss_pred             CCCccEEECCCcccCCc----cchhhc--CCCCCcEEECCCCcCCc----cCCccc-cCCCCCcEEECCCCccccccc
Q 039739          528 SYSLVTLDLSYNRLNGN----ISDWVD--GLSQLSHLILGHNNLEG----EVPVQL-CKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       528 ~~~L~~L~l~~~~~~~~----~~~~~~--~l~~L~~L~l~~~~i~~----~~~~~l-~~l~~L~~L~l~~~~~~~~ip  594 (628)
                      +++|+.|++++|.+++.    ++..+.  .+++|+.|++++|+++.    .+|..+ .++++|++|++++|++.+..|
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88899999999988755    455563  38899999999999986    377777 668999999999999886554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=6.9e-19  Score=166.56  Aligned_cols=180  Identities=22%  Similarity=0.184  Sum_probs=106.8

Q ss_pred             ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEEC
Q 039739          385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM  464 (628)
Q Consensus       385 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  464 (628)
                      ...++++++++.++... ..+  .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34566666666665422 222  246666777766666555556666666666666666666555555666666666666


Q ss_pred             CCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCc
Q 039739          465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN  544 (628)
Q Consensus       465 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  544 (628)
                      ++|.+....+..|..+++|++|++++|+++...                        ...+..+++|+.|++++|++++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP------------------------SGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcC------------------------hhHhccCCcccEEECcCCcCCcc
Confidence            666666555555666666666666666655333                        33345555666666666666554


Q ss_pred             cchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739          545 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       545 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  591 (628)
                      .+..|+.+++|+.|++++|++++..+..|..+++|++|++++|++..
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            44455666666666666666664444455566666666666666653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=182.81  Aligned_cols=226  Identities=20%  Similarity=0.205  Sum_probs=121.1

Q ss_pred             CccEEEcccccCCCcccc---cccCCCCccEEECcCCcccCccchhhh-cCCccccEEEccCCccCCccc----ccccCC
Q 039739          337 SLFSLNISMNALDGSIPS---SFGNMKFLQILDLSNNHLTGEIPEHLV-VGCVNLESLALSNNSLEGHMF----SRNFNL  408 (628)
Q Consensus       337 ~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~~  408 (628)
                      .++.+.+.++.+......   .+..+++|++|++++|.+.+..+...+ ..+++|++|++++|.+.+...    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            455666665554421000   111234466666666665544444332 445566666666665554222    222345


Q ss_pred             CCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCc--c--CccccCCCCcceEECCCCcCCCCCcc---cccCCC
Q 039739          409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGK--I--PRWLGNLTRLQHIMMPKNHLEGPIPV---EFCQLD  481 (628)
Q Consensus       409 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~l~  481 (628)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.++.....   .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            5666666666655544445555555666666666554321  1  12224455555555555555421111   134445


Q ss_pred             CCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcccccc---CCCccEEECCCcccCCccchhhcCCCCCcEE
Q 039739          482 WLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFN---SYSLVTLDLSYNRLNGNISDWVDGLSQLSHL  558 (628)
Q Consensus       482 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  558 (628)
                      +|++|++++|++.+                       ..|.. +..   +++|+.|++++|+++ .+|..+.  ++|+.|
T Consensus       225 ~L~~L~Ls~N~l~~-----------------------~~p~~-~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L  277 (310)
T 4glp_A          225 QPHSLDLSHNSLRA-----------------------TVNPS-APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL  277 (310)
T ss_dssp             CCSSEECTTSCCCC-----------------------CCCSC-CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred             CCCEEECCCCCCCc-----------------------cchhh-HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence            55555555555543                       33322 222   367777788877777 4555543  678888


Q ss_pred             ECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739          559 ILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       559 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  591 (628)
                      ++++|++++ +|. +..+++|+.|++++|++++
T Consensus       278 ~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          278 DLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence            888888873 343 6677888888888887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=1.9e-19  Score=169.13  Aligned_cols=197  Identities=20%  Similarity=0.222  Sum_probs=112.8

Q ss_pred             CccEEEcccccCCCcccccccCCCCccEEECcCCc-ccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEE
Q 039739          337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ  415 (628)
Q Consensus       337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  415 (628)
                      +++.|++++|.+++..+..+..+++|+.|++++|+ +. .++..                        .+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~------------------------~f~~l~~L~~L~   86 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESH------------------------SFYNLSKVTHIE   86 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTT------------------------TEESCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHh------------------------HcCCCcCCcEEE
Confidence            55555555555554333345555555555555554 33 34433                        344444445555


Q ss_pred             ccC-ccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcc---eEECCCC-cCCCCCcccccCCCCCC-EEEcc
Q 039739          416 LEG-NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ---HIMMPKN-HLEGPIPVEFCQLDWLQ-ILDIS  489 (628)
Q Consensus       416 l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~  489 (628)
                      +++ |.+.+..+..+..+++|++|++++|.+.+ +|. +..+++|+   +|++++| .+....+..|..+++|+ .|+++
T Consensus        87 l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C           87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             CCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            544 44443333444455555555555555442 232 44455554   6666666 55544444566666666 66666


Q ss_pred             CCcCcCCCCCCCCCCcccEEecCCCc-CcCCCCccccccC-CCccEEECCCcccCCccchhhcCCCCCcEEECCCCc
Q 039739          490 DNNISGSLPSCFHPLSVEQVHLSKNM-LHGQLKRGTFFNS-YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNN  564 (628)
Q Consensus       490 ~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  564 (628)
                      +|++....+..+..++|+.|++++|+ +. .++..++..+ ++|+.|++++|++++.++.   .+++|+.|+++++.
T Consensus       165 ~n~l~~i~~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             SCCCCEECTTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCcccCHhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            66666444444445667777777774 54 5555557888 8999999999998854433   67788999888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=1.1e-18  Score=165.16  Aligned_cols=180  Identities=24%  Similarity=0.251  Sum_probs=129.1

Q ss_pred             CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739          361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL  440 (628)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  440 (628)
                      +.+.++++++.+. .+|..+   .+.++.|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4556777776665 555443   356777777777777666666777788888888888877666677778888888888


Q ss_pred             cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739          441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL  520 (628)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  520 (628)
                      ++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|++++|++.+..                       
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------  147 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-----------------------  147 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-----------------------
Confidence            888887666677788888888888888888666666788888888888888776322                       


Q ss_pred             CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCcc
Q 039739          521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGE  568 (628)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~  568 (628)
                       ...+..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus       148 -~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          148 -AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             -TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             -HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence             22255566666677776666655555666667777777777766643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=1e-18  Score=170.56  Aligned_cols=192  Identities=23%  Similarity=0.310  Sum_probs=147.2

Q ss_pred             CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739          335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL  414 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  414 (628)
                      +++|+.|++.+|.+.. ++ .+..+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            5688888888888774 34 5777888888888888887 4554  55688888888888887763  357778888888


Q ss_pred             EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      ++++|.+.+. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++.
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            8888888753 3 37788888888888888874433  7788888888888888875443  788888888888888887


Q ss_pred             CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739          495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG  543 (628)
Q Consensus       495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  543 (628)
                      +..+ ...+++|+.|++++|++.+.. +  +..+++|+.|++++|.+++
T Consensus       187 ~~~~-l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP-LASLPNLIEVHLKNNQISDVS-P--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG-GGGCTTCCEEECTTSCCCBCG-G--GTTCTTCCEEEEEEEEEEC
T ss_pred             cChh-hcCCCCCCEEEccCCccCccc-c--ccCCCCCCEEEccCCeeec
Confidence            5433 444788888888888886433 2  6778888888888888874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=5.9e-20  Score=182.60  Aligned_cols=224  Identities=17%  Similarity=0.187  Sum_probs=164.7

Q ss_pred             CCccEEEccCCcccCcCchhHHhcC--ccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcc-cchhhhhhCCCc
Q 039739          262 HDLEYVDLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGH-IPVEIGDVLPSL  338 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~~L  338 (628)
                      ..++.++++++.+.   +.. +..+  ++++.+++.++.+.+..+. +..+++|++|++++|.+.+. ++..+ ..+++|
T Consensus        47 ~~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCC
T ss_pred             hhheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCC
Confidence            34788888887665   222 3455  7899999998887765544 55789999999999987654 44444 448899


Q ss_pred             cEEEcccccCCCcccccccCCCCccEEECcCC-cccCccchhhhcCCccccEEEccCC-ccCCc-ccccccCCC-CCcEE
Q 039739          339 FSLNISMNALDGSIPSSFGNMKFLQILDLSNN-HLTGEIPEHLVVGCVNLESLALSNN-SLEGH-MFSRNFNLT-NLRWL  414 (628)
Q Consensus       339 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~-~L~~L  414 (628)
                      ++|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++. ....+..++ +|++|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            99999999888777778888999999999998 5653223334556889999999998 77654 344566788 89999


Q ss_pred             EccCc--cCc-CcccccccCCCcccEEEccCCc-CCCccCccccCCCCcceEECCCCc-CCCCCcccccCCCCCCEEEcc
Q 039739          415 QLEGN--HFV-GEIPQSLSKCFVLEGLFLNNNS-LSGKIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDIS  489 (628)
Q Consensus       415 ~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~  489 (628)
                      ++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            99888  444 3456666778888888888888 665666677888888888888885 222222246778888888888


Q ss_pred             CC
Q 039739          490 DN  491 (628)
Q Consensus       490 ~~  491 (628)
                      +|
T Consensus       281 ~~  282 (336)
T 2ast_B          281 GI  282 (336)
T ss_dssp             TS
T ss_pred             Cc
Confidence            77

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=9.8e-19  Score=174.19  Aligned_cols=243  Identities=19%  Similarity=0.149  Sum_probs=140.2

Q ss_pred             CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccE-EEc
Q 039739          314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLES-LAL  392 (628)
Q Consensus       314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l  392 (628)
                      ++++.+++.++ .+|..+   .+++++|++++|.++...+..|.++++|++|++++|++.+.++...+.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666665 566544   3466677777766664333456666666666666666654555555555555544 333


Q ss_pred             cCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC
Q 039739          393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP  472 (628)
Q Consensus       393 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  472 (628)
                      ++|++....+..+..+++|+.|++++|.+....+..+.....+..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            445554444444555555555555555554333333333333444444332                       223322


Q ss_pred             CcccccCC-CCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcC
Q 039739          473 IPVEFCQL-DWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDG  551 (628)
Q Consensus       473 ~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  551 (628)
                      .+..|..+ ..++.|++++|+++...+..+...+++.+.+.++...+.++.++|..+++|+.|++++|+++..++..   
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence            23334443 24666677777666555555666677777776544445777776788888888888888887544333   


Q ss_pred             CCCCcEEECCCCcCCccCCccccCCCCCcEEECCCC
Q 039739          552 LSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  587 (628)
Q Consensus       552 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~  587 (628)
                      +.+|+.|.+.+++-...+|. +.++++|+.+++.++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            45666666666654446663 777888888888653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=6.4e-21  Score=193.19  Aligned_cols=246  Identities=17%  Similarity=0.191  Sum_probs=184.2

Q ss_pred             CCcccccCCccCEEEccCCcCCcccchhhh---hhCCCccEEEcccccC---CCcccccc-------cCCCCccEEECcC
Q 039739          303 FQLPIHSHKRLGMLDISNNNFRGHIPVEIG---DVLPSLFSLNISMNAL---DGSIPSSF-------GNMKFLQILDLSN  369 (628)
Q Consensus       303 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---~~~~~L~~L~L~~~~~---~~~~~~~~-------~~~~~L~~L~l~~  369 (628)
                      ....+..++.|++|++++|.+.+..+..+.   ..+++|+.|++++|.+   .+.+|..+       ..+++|+.|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            344567889999999999998865444433   2378999999999754   33445444       7899999999999


Q ss_pred             CcccCc----cchhhhcCCccccEEEccCCccCCccccccc----CC---------CCCcEEEccCccCcC-ccc---cc
Q 039739          370 NHLTGE----IPEHLVVGCVNLESLALSNNSLEGHMFSRNF----NL---------TNLRWLQLEGNHFVG-EIP---QS  428 (628)
Q Consensus       370 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~----~~---------~~L~~L~l~~~~~~~-~~~---~~  428 (628)
                      |.+...    ++. .+..+++|++|++++|.++......+.    .+         ++|++|++++|.+.. ..+   ..
T Consensus       104 n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            998853    332 345689999999999998654433333    33         899999999999873 344   46


Q ss_pred             ccCCCcccEEEccCCcCCCc-----cCccccCCCCcceEECCCCcCC----CCCcccccCCCCCCEEEccCCcCcCCCCC
Q 039739          429 LSKCFVLEGLFLNNNSLSGK-----IPRWLGNLTRLQHIMMPKNHLE----GPIPVEFCQLDWLQILDISDNNISGSLPS  499 (628)
Q Consensus       429 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  499 (628)
                      +..+++|++|++++|.+...     .+..+..+++|++|++++|.++    ...+..+..+++|+.|++++|.+.+....
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            77899999999999988632     3337888999999999999985    45667788999999999999987642110


Q ss_pred             CCCCCcccEEecCCCcCcCCCCcccc--ccCCCccEEECCCcccCC----ccchhh-cCCCCCcEEECCCCcCCccC
Q 039739          500 CFHPLSVEQVHLSKNMLHGQLKRGTF--FNSYSLVTLDLSYNRLNG----NISDWV-DGLSQLSHLILGHNNLEGEV  569 (628)
Q Consensus       500 ~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~i~~~~  569 (628)
                                         .++.. +  +.+++|+.|++++|.+++    .+|..+ .++++|+.|++++|++++..
T Consensus       263 -------------------~l~~~-l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 -------------------AVVDA-FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             -------------------HHHHH-HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             -------------------HHHHH-HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                               11221 3  337888888998888886    366666 66789999999999888655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=5.5e-19  Score=172.97  Aligned_cols=228  Identities=18%  Similarity=0.180  Sum_probs=157.3

Q ss_pred             CCccEEEccCCcccCcCchhH--HhcCccCcEEEeecCCCCCCCCccc--ccCCccCEEEccCCcCCcccc----hhhhh
Q 039739          262 HDLEYVDLSHIKMNGEFPTWL--LENNTKLRQLSLVNDSLGGPFQLPI--HSHKRLGMLDISNNNFRGHIP----VEIGD  333 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~----~~~~~  333 (628)
                      ..++.+.+.++.+.......+  ...+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            356777887776643222211  1234679999999999888777776  888999999999998875444    2222 


Q ss_pred             hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCc--cc-hhhhcCCccccEEEccCCccCCcccc---cccC
Q 039739          334 VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IP-EHLVVGCVNLESLALSNNSLEGHMFS---RNFN  407 (628)
Q Consensus       334 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~  407 (628)
                      .+++|+.|++++|.+.+..+..+..+++|++|++++|++.+.  ++ ......+++|++|++++|.++.....   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478899999999998877777888889999999999876522  11 12224577888888888877532211   2346


Q ss_pred             CCCCcEEEccCccCcCcccccccCC---CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCC
Q 039739          408 LTNLRWLQLEGNHFVGEIPQSLSKC---FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ  484 (628)
Q Consensus       408 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  484 (628)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|.+. .+|..+.  ++|++|++++|.+.+. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            6788888888888776666656555   57777777777776 4455443  6777777777777643 22 56667777


Q ss_pred             EEEccCCcCcC
Q 039739          485 ILDISDNNISG  495 (628)
Q Consensus       485 ~L~l~~~~~~~  495 (628)
                      .|++++|++++
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            77777777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=7.8e-18  Score=154.40  Aligned_cols=163  Identities=23%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEEC
Q 039739          385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM  464 (628)
Q Consensus       385 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  464 (628)
                      ++|++|++++|.++......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34444555444444333333444455555555555444333333444455555555555444333333444555555555


Q ss_pred             CCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCc
Q 039739          465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN  544 (628)
Q Consensus       465 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  544 (628)
                      ++|.+.+..+..+..+++|+.|++++|++++                        ++...+..+++|+.|++++|.+.  
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~N~~~--  161 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------------------------VPDGVFDRLTSLQYIWLHDNPWD--  161 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------------------------CCTTTTTTCTTCCEEECCSCCBC--
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccce------------------------eCHHHhccCCCccEEEecCCCee--
Confidence            5555544433334445555555555554442                        22222444555555555555443  


Q ss_pred             cchhhcCCCCCcEEECCCCcCCccCCccccCCCC
Q 039739          545 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ  578 (628)
Q Consensus       545 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~  578 (628)
                           +.+++|+.|+++.|++++.+|+.++.++.
T Consensus       162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                 23345555555555555555555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=7.8e-18  Score=154.41  Aligned_cols=162  Identities=22%  Similarity=0.215  Sum_probs=107.0

Q ss_pred             cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC-CCCcccEEecC
Q 039739          434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSVEQVHLS  512 (628)
Q Consensus       434 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~  512 (628)
                      ++++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|++++|++....+..+ .+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444443333344445555555555555543333334455555555555555553333332 24555555555


Q ss_pred             CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccc
Q 039739          513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS  592 (628)
Q Consensus       513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  592 (628)
                      +|++. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+       .+++|+.|++++|+++|.
T Consensus       109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred             CCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence            55554 3444447889999999999999997777778999999999999998873       457899999999999999


Q ss_pred             ccccccccccc
Q 039739          593 IPLCLDNTTLH  603 (628)
Q Consensus       593 ip~~~~~~~~~  603 (628)
                      +|+.+..++-.
T Consensus       181 ip~~~~~l~~~  191 (208)
T 2o6s_A          181 VRNSAGSVAPD  191 (208)
T ss_dssp             BBCTTSSBCTT
T ss_pred             eeccCccccCC
Confidence            99999987653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=1e-17  Score=166.81  Aligned_cols=224  Identities=22%  Similarity=0.214  Sum_probs=169.3

Q ss_pred             cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCccc-ccccCCCcccE-EEc
Q 039739          363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-QSLSKCFVLEG-LFL  440 (628)
Q Consensus       363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~l  440 (628)
                      ++++.++++++ ++|..+   .+++++|++++|+++......|.++++|++|++++|.+.+.++ .+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666 666544   4577888888888876666677788888888888888765444 46777877765 555


Q ss_pred             cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCC-cCcCCCCCCCC--CCcccEEecCCCcCc
Q 039739          441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN-NISGSLPSCFH--PLSVEQVHLSKNMLH  517 (628)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~--~~~L~~L~l~~n~~~  517 (628)
                      ..|.+....+..|.++++|++|++++|.+....+..+....++..+++.++ .+....+..+.  ...++.|++++|++.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            667777667788899999999999999998777767778888999999775 55544444444  456889999999995


Q ss_pred             CCCCccccccCCCccEEECCC-cccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccc
Q 039739          518 GQLKRGTFFNSYSLVTLDLSY-NRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPL  595 (628)
Q Consensus       518 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~  595 (628)
                       .++..++ ...+|+.|++++ |.++...++.|..+++|+.|++++|+++ .+|..  .+.+|+.|.+.++...+.+|+
T Consensus       168 -~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          168 -EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             -EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred             -CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC
Confidence             6777644 457899999985 5677555567899999999999999999 66653  356778888888877778885

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.5e-17  Score=173.93  Aligned_cols=189  Identities=24%  Similarity=0.322  Sum_probs=107.3

Q ss_pred             CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739          361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL  440 (628)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  440 (628)
                      +++.|+++++.+. .+|..+   +++|++|++++|.++.. +   ..+++|+.|++++|.+++ +|.             
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-------------  117 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-------------  117 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-------------
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-------------
Confidence            5555666655554 344332   24555555555555421 1   234455555555554443 333             


Q ss_pred             cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739          441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL  520 (628)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  520 (628)
                                  +.+  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.  .+++|+.|++++|.+++ +
T Consensus       118 ------------l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          118 ------------LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             ------------CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-C
T ss_pred             ------------hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-c
Confidence                        222  45555555555443 222   34555555555555543 222  34555555555555543 4


Q ss_pred             CccccccCCCccEEECCCcccCCccchhhcCCCCC-------cEEECCCCcCCccCCccccCCCCCcEEECCCCcccccc
Q 039739          521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL-------SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSI  593 (628)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~i  593 (628)
                      |.  +.  ++|+.|++++|+++ .+|. +..  +|       +.|++++|+++ .+|..+.++++|+.|++++|++++.+
T Consensus       176 p~--l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          176 PE--LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CC--CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             ch--hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            44  32  67777777777777 3444 443  56       88888888888 67877777888888888888888888


Q ss_pred             ccccccccc
Q 039739          594 PLCLDNTTL  602 (628)
Q Consensus       594 p~~~~~~~~  602 (628)
                      |..+.+++.
T Consensus       247 p~~l~~l~~  255 (571)
T 3cvr_A          247 RESLSQQTA  255 (571)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            888877654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=4.9e-17  Score=157.07  Aligned_cols=186  Identities=20%  Similarity=0.238  Sum_probs=109.5

Q ss_pred             EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCC
Q 039739          364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN  443 (628)
Q Consensus       364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  443 (628)
                      .+.+....+.+....   ..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus        28 ~~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           28 KDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHTTCSCTTSEECH---HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHhcCCCcccccch---hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            334555554422222   2367788888888777653  345667788888888887775433  677777888888777


Q ss_pred             cCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCcc
Q 039739          444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRG  523 (628)
Q Consensus       444 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  523 (628)
                      .+.+ . ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+. +....+++|+.|++++|.+.+.. + 
T Consensus       101 ~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~-~-  173 (291)
T 1h6t_A          101 KVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-P-  173 (291)
T ss_dssp             CCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-G-
T ss_pred             cCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch-h-
Confidence            7763 2 2367777777777777777643  3466777777777777776632 22223455555555555553222 1 


Q ss_pred             ccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          524 TFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       524 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                       +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence             44455555555555555432 2 2445555555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1.4e-16  Score=146.96  Aligned_cols=133  Identities=24%  Similarity=0.281  Sum_probs=67.9

Q ss_pred             CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739          433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS  512 (628)
Q Consensus       433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  512 (628)
                      +++++|++++|.+....+..|.++++|+.|++++|.+....|..|..+++|++|++++|+++.                 
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------   94 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-----------------   94 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-----------------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-----------------
Confidence            355555555555554444455555566666666665555555555566666666666655542                 


Q ss_pred             CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739          513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL  589 (628)
Q Consensus       513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  589 (628)
                             ++...+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..++.|..+++|++|++++|++
T Consensus        95 -------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           95 -------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             -------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             -------cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence                   2222234444445555555544444444444445555555555555433333444455555555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=2.6e-16  Score=145.15  Aligned_cols=132  Identities=24%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             ccEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCC
Q 039739          435 LEGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSK  513 (628)
Q Consensus       435 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  513 (628)
                      +++|++++|.+.+..+ ..|.++++|++|++++|.+.+..+..|..+++|++|++++|+++.                  
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~------------------   95 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN------------------   95 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC------------------
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc------------------
Confidence            3455555554443322 234445555555555555554444445555555555555554442                  


Q ss_pred             CcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739          514 NMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       514 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                            ++...+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|+.|..+++|++|++++|++.
T Consensus        96 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           96 ------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence                  22222444555555555555555544555555555555555555555444555555555555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=3e-16  Score=164.11  Aligned_cols=194  Identities=23%  Similarity=0.321  Sum_probs=133.3

Q ss_pred             CCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEE
Q 039739          336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQ  415 (628)
Q Consensus       336 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  415 (628)
                      .+++.|++++|.+++ +|..+  +++|+.|++++|.+. .+|    ..+++|+.|++++|.+++. +. +..  +|+.|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEE
Confidence            489999999999985 66655  489999999999998 777    2379999999999999873 33 443  999999


Q ss_pred             ccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcC
Q 039739          416 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG  495 (628)
Q Consensus       416 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  495 (628)
                      +++|.+++ +|.   .+++|++|++++|.+.+ +|.   .+++|++|++++|.+++ .|. +.  ++|+.|++++|.++ 
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            99999985 555   57889999999998875 444   56888889999888885 444 54  88888888888887 


Q ss_pred             CCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccC
Q 039739          496 SLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCK  575 (628)
Q Consensus       496 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~  575 (628)
                      .+|. +. .+|                  ....+.|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus       194 ~lp~-~~-~~L------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          194 SLPA-VP-VRN------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             SCCC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             chhh-HH-Hhh------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            4443 22 133                  111122355555555554 23444444555555555555555444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1e-16  Score=169.72  Aligned_cols=190  Identities=19%  Similarity=0.219  Sum_probs=122.3

Q ss_pred             CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739          361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL  440 (628)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  440 (628)
                      .+..+.+..+.+.+..+   ...+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|++|++
T Consensus        22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            34445556555553322   22367777888887777653  346677888888888887775433  677778888888


Q ss_pred             cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739          441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL  520 (628)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  520 (628)
                      ++|.+.+ + ..+..+++|++|++++|.+...  ..+..+++|+.|++++|.+.+. +....+++|+.|+|++|.+.+..
T Consensus        95 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           95 DENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             CSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             cCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence            8877763 2 2577777788888887777643  3467777777777777777643 33334666666666666665333


Q ss_pred             CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCc
Q 039739          521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG  567 (628)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~  567 (628)
                      +   +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++..
T Consensus       170 ~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          170 P---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             G---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             h---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            2   55666666666666666643  246666666666666666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=3e-16  Score=151.53  Aligned_cols=173  Identities=24%  Similarity=0.292  Sum_probs=118.3

Q ss_pred             cCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCccc
Q 039739          357 GNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLE  436 (628)
Q Consensus       357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  436 (628)
                      ..+++|+.|++++|.+. .++.  +..+++|++|++++|.+++...  +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            45667777777777765 4443  4457777777777777765433  6677777777777777764 22 367777777


Q ss_pred             EEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739          437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML  516 (628)
Q Consensus       437 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  516 (628)
                      +|++++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..+ ...+++|+.|++++|.+
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence            777777777643  4566777777777777777654  457777777777777777775444 44467777777777777


Q ss_pred             cCCCCccccccCCCccEEECCCcccCCc
Q 039739          517 HGQLKRGTFFNSYSLVTLDLSYNRLNGN  544 (628)
Q Consensus       517 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~  544 (628)
                      .+ ++.  +..+++|+.|++++|.++..
T Consensus       191 ~~-l~~--l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          191 SD-LRA--LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CB-CGG--GTTCTTCSEEEEEEEEEECC
T ss_pred             CC-Chh--hccCCCCCEEECcCCcccCC
Confidence            53 332  66677777777777777643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=1e-15  Score=142.11  Aligned_cols=134  Identities=23%  Similarity=0.291  Sum_probs=71.8

Q ss_pred             CcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecC
Q 039739          433 FVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS  512 (628)
Q Consensus       433 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  512 (628)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|+.|++++|+++.                 
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-----------------  102 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-----------------  102 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-----------------
Confidence            455555555555554444455555555555555555554444445555555555555555542                 


Q ss_pred             CCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739          513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       513 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  591 (628)
                             ++...+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..|..+++|+.|++.+|++..
T Consensus       103 -------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          103 -------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             -------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             -------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence                   22222445555666666666555 445555555666666666666653333445556666666666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=2.5e-16  Score=166.79  Aligned_cols=199  Identities=22%  Similarity=0.270  Sum_probs=161.1

Q ss_pred             CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEc
Q 039739          337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL  416 (628)
Q Consensus       337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  416 (628)
                      .+..+.+..+.+....+  +..+++|+.|+++++.+. .++.  +..+++|+.|++++|.+.+..+  +..+++|+.|++
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            34555666666654332  466789999999999987 5654  5569999999999999987544  788999999999


Q ss_pred             cCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739          417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS  496 (628)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  496 (628)
                      ++|.+.+ ++ .+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            9999875 33 688999999999999999753  4688999999999999999865  5789999999999999999876


Q ss_pred             CCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCC
Q 039739          497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGL  552 (628)
Q Consensus       497 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  552 (628)
                      .+ ...+++|+.|+|++|.+.+ ++  .+..+++|+.|+|++|.+...+...+..+
T Consensus       169 ~~-l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          169 VP-LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             hh-hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcCCcccccccE
Confidence            56 5558999999999999964 43  28889999999999999986544444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=2.7e-16  Score=157.16  Aligned_cols=174  Identities=26%  Similarity=0.189  Sum_probs=85.3

Q ss_pred             EEECcCCcccCccchhhhcCCccccEEEccCCccCCccccccc-CCCCCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739          364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  442 (628)
Q Consensus       364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  442 (628)
                      .++++++.+. .+|..+   .+.++.|++++|.++......+. .+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus        22 ~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4444444443 344322   23345555555555444333343 455555555555555544444555555555555555


Q ss_pred             CcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC----CCCcccEEecCCCcCcC
Q 039739          443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF----HPLSVEQVHLSKNMLHG  518 (628)
Q Consensus       443 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~n~~~~  518 (628)
                      |.+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|++....+..+    .+++|+.|++++|++. 
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence            55554444455555556666666655554445555556666666666665553222222    1334444444444443 


Q ss_pred             CCCccccccCCC--ccEEECCCcccC
Q 039739          519 QLKRGTFFNSYS--LVTLDLSYNRLN  542 (628)
Q Consensus       519 ~~~~~~~~~~~~--L~~L~l~~~~~~  542 (628)
                      .++...+..++.  ++.|++++|.+.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            233222444444  355666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=1.9e-16  Score=150.33  Aligned_cols=168  Identities=18%  Similarity=0.219  Sum_probs=96.6

Q ss_pred             CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEE
Q 039739          384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIM  463 (628)
Q Consensus       384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  463 (628)
                      +.++..++++++.+++..  .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +.++++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            455666667776665432  45567777777777777663 33 46667777777777777664433  66677777777


Q ss_pred             CCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739          464 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG  543 (628)
Q Consensus       464 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  543 (628)
                      +++|.+.+..+  +.. ++|+.|++++|++.+ .+....+++|+.|++++|++.+ ++  .+..+++|+.|++++|.+++
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcc
Confidence            77777664322  222 666666666666653 2223335555555555555532 22  24455555555555555553


Q ss_pred             ccchhhcCCCCCcEEECCCCcCC
Q 039739          544 NISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       544 ~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      .  ..+..+++|+.|++++|+++
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEE
T ss_pred             h--HHhccCCCCCEEeCCCCccc
Confidence            3  34455555555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=3e-16  Score=142.26  Aligned_cols=152  Identities=16%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             CCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEE
Q 039739          407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL  486 (628)
Q Consensus       407 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  486 (628)
                      .+++|+.|++++|.+. .++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3444444444444444 222 3444444444444444332  11234444444444444444443334444444444444


Q ss_pred             EccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcc-cCCccchhhcCCCCCcEEECCCCcC
Q 039739          487 DISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNR-LNGNISDWVDGLSQLSHLILGHNNL  565 (628)
Q Consensus       487 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~i  565 (628)
                      ++++|++++                       ..+.. +..+++|+.|++++|. ++ .++ .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~-----------------------~~~~~-l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          118 DISHSAHDD-----------------------SILTK-INTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             ECCSSBCBG-----------------------GGHHH-HTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred             EecCCccCc-----------------------HhHHH-HhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence            444444432                       22222 4555666666666665 44 233 456666666666666666


Q ss_pred             CccCCccccCCCCCcEEECCCCccc
Q 039739          566 EGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       566 ~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      ++ ++ .+..+++|++|++++|++.
T Consensus       172 ~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          172 HD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CC-CT-TGGGCSSCCEEEECBC---
T ss_pred             cC-hH-HhccCCCCCEEEeeCcccC
Confidence            62 33 5666666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=5.3e-16  Score=155.03  Aligned_cols=175  Identities=22%  Similarity=0.185  Sum_probs=105.7

Q ss_pred             cEEEccCCccCCcccccccCCCCCcEEEccCccCcCccccccc-CCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739          388 ESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS-KCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK  466 (628)
Q Consensus       388 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  466 (628)
                      +.++++++.++... ..+  .+.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            56777777766432 222  24577788888877765555565 777777888777777766666677777777777777


Q ss_pred             CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCcccc---ccCCCccEEECCCcccC
Q 039739          467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTF---FNSYSLVTLDLSYNRLN  542 (628)
Q Consensus       467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~~~~~  542 (628)
                      |.+....+..|..+++|+.|++++|++....+..+. +++|+.|++++|++. .++...+   ..+++|+.|+|++|.++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            777765566677777777777777777654444333 455555555555553 2333323   33455555555555555


Q ss_pred             CccchhhcCCCCC--cEEECCCCcCC
Q 039739          543 GNISDWVDGLSQL--SHLILGHNNLE  566 (628)
Q Consensus       543 ~~~~~~~~~l~~L--~~L~l~~~~i~  566 (628)
                      +..+..+..++.+  +.|++.+|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            4444444444442  44555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=2.2e-16  Score=155.75  Aligned_cols=288  Identities=13%  Similarity=0.062  Sum_probs=151.0

Q ss_pred             CCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCC--CCCCcccccCCccCEEEccCCcCCcccchhhhhh----
Q 039739          261 QHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG--GPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDV----  334 (628)
Q Consensus       261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~----  334 (628)
                      .++++.|.+++. +.......+...+++|+.|+++++.+.  ....   ...+.+..+.+..+    .+|...+..    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhcccccc
Confidence            345666766643 111112222222667777777777665  1111   11222333333333    333344344    


Q ss_pred             ----CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCc----cCCccccccc
Q 039739          335 ----LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNS----LEGHMFSRNF  406 (628)
Q Consensus       335 ----~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----l~~~~~~~~~  406 (628)
                          +++|+.+++.. .++...+.+|.+|++|+.++++++.+. .++...|.++.++..+......    ........+.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                56666666666 555444455666666666666666665 5555556555555555544321    1111122333


Q ss_pred             CCCCCc-EEEccCccCcC-cccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCC
Q 039739          407 NLTNLR-WLQLEGNHFVG-EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ  484 (628)
Q Consensus       407 ~~~~L~-~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  484 (628)
                      ++..|+ .+.+....... .....-....+++.+.+.+.-...........+++|+.+++++|.+....+..|.+|++|+
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            444444 33332211100 0000001223344444443321111111112255666666666555545555566666666


Q ss_pred             EEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCcc-EEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739          485 ILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLV-TLDLSYNRLNGNISDWVDGLSQLSHLILGHN  563 (628)
Q Consensus       485 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  563 (628)
                      .+++.+| +                        ..++..+|.++++|+ .+++.+ .++...+..|.++++|+.+++.+|
T Consensus       254 ~l~l~~n-i------------------------~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          254 KIKLPHN-L------------------------KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             EEECCTT-C------------------------CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             EEECCcc-c------------------------ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence            6665554 2                        256666788888888 888887 666566678888888888888888


Q ss_pred             cCCccCCccccCCCCCcEEEC
Q 039739          564 NLEGEVPVQLCKLNQLQLLDL  584 (628)
Q Consensus       564 ~i~~~~~~~l~~l~~L~~L~l  584 (628)
                      +++...+..|.++++|+.++-
T Consensus       308 ~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          308 KITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCCEECTTTTCTTCCCCEEEC
T ss_pred             ccCccchhhhcCCcchhhhcc
Confidence            888666778888888888763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=2.2e-15  Score=138.93  Aligned_cols=133  Identities=17%  Similarity=0.138  Sum_probs=77.9

Q ss_pred             ccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEcc
Q 039739          362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  441 (628)
Q Consensus       362 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  441 (628)
                      ++.|++++|.+....+...+..+++|++|++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            44555555555422233334445555555555555554444455556666666666666655555556666666666666


Q ss_pred             CCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       442 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      +|.+.+..+..+.++++|++|++++|.+.+..|..|..+++|+.|++++|++.
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            66666555566666666666666666666555666666666666666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.64  E-value=2.3e-15  Score=138.71  Aligned_cols=133  Identities=22%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739          361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL  440 (628)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  440 (628)
                      +++.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            4444444444444 333333334445555555555444444444445555555555555555333344455555555555


Q ss_pred             cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      ++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            555555444555555555555555555555544445555556666666555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.4e-15  Score=137.78  Aligned_cols=151  Identities=17%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739          335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL  414 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  414 (628)
                      +++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++  .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            445666666666655 333 4555666666666666543 332  23346666666666666665555566666777777


Q ss_pred             EccCccCcCcccccccCCCcccEEEccCCc-CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcC
Q 039739          415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI  493 (628)
Q Consensus       415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  493 (628)
                      ++++|.+.+..+..+..+++|++|++++|. +. ..+ .+.++++|++|++++|.+.+..  .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            777777665556666667777777777776 43 333 4666777777777777766432  566677777777777765


Q ss_pred             c
Q 039739          494 S  494 (628)
Q Consensus       494 ~  494 (628)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=6.4e-16  Score=152.47  Aligned_cols=104  Identities=22%  Similarity=0.322  Sum_probs=78.4

Q ss_pred             hCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcccc-EEEccCCccCCcccccccCCCCCc
Q 039739          334 VLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLE-SLALSNNSLEGHMFSRNFNLTNLR  412 (628)
Q Consensus       334 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~  412 (628)
                      .+++|+.+++.+|.++.....+|.+|++|+.++++++ +. .++...|.+|++|+ .+.+.. .++......|.+|++|+
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            3677888888877777555567788888888888776 54 67777777788888 888876 56666667777888888


Q ss_pred             EEEccCccCcCcccccccCCCcccEEEc
Q 039739          413 WLQLEGNHFVGEIPQSLSKCFVLEGLFL  440 (628)
Q Consensus       413 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l  440 (628)
                      .+++.++.+....+.+|.+|++|+.++.
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8888777777666677888888887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=6.8e-15  Score=136.60  Aligned_cols=152  Identities=24%  Similarity=0.196  Sum_probs=95.6

Q ss_pred             ccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739          387 LESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK  466 (628)
Q Consensus       387 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  466 (628)
                      -+.++.+++.+..... .+  .++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..|.++++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            3456666555543222 11  26677777777777666666677777777777777777655555667777888888888


Q ss_pred             CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc
Q 039739          467 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS  546 (628)
Q Consensus       467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  546 (628)
                      |.+....+..|..+++|++|++++|++..                        ++.. +..+++|+.|++++|++++..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~------------------------lp~~-~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE------------------------LPRG-IERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCS------------------------CCTT-GGGCTTCSEEECCSSCCCCCCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccc------------------------cCcc-cccCCCCCEEECCCCcCCccCH
Confidence            87776666667777888888887777662                        2222 3445555666666665554444


Q ss_pred             hhhcCCCCCcEEECCCCcCC
Q 039739          547 DWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       547 ~~~~~l~~L~~L~l~~~~i~  566 (628)
                      ..+..+++|+.|++++|++.
T Consensus       153 ~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTTCTTCCEEECTTSCBC
T ss_pred             HHHhCCCCCCEEEeeCCCcc
Confidence            45555566666666666555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=1.3e-15  Score=144.54  Aligned_cols=170  Identities=19%  Similarity=0.204  Sum_probs=112.8

Q ss_pred             CCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEE
Q 039739          359 MKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGL  438 (628)
Q Consensus       359 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  438 (628)
                      ++++..++++++.+. .++.  +..+++|++|++++|.++...  .+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        18 l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            345666667777665 3432  334677777777777776532  56667777777777777764433  6777777777


Q ss_pred             EccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcC
Q 039739          439 FLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHG  518 (628)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  518 (628)
                      ++++|.+.+. +. +.. ++|++|++++|.+.+.  ..+..+++|+.|++++|++++. +....+++|+.|++++|++.+
T Consensus        91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB
T ss_pred             ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc
Confidence            7777777642 22 222 7777777777777643  2477777777788777777643 333346777777777777754


Q ss_pred             CCCccccccCCCccEEECCCcccCCc
Q 039739          519 QLKRGTFFNSYSLVTLDLSYNRLNGN  544 (628)
Q Consensus       519 ~~~~~~~~~~~~L~~L~l~~~~~~~~  544 (628)
                      .   ..+..+++|+.|++++|.+...
T Consensus       165 ~---~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T---GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C---TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h---HHhccCCCCCEEeCCCCcccCC
Confidence            4   2366777777777777777644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=7.3e-14  Score=140.44  Aligned_cols=265  Identities=11%  Similarity=0.084  Sum_probs=137.6

Q ss_pred             CccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEE
Q 039739          286 NTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQIL  365 (628)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L  365 (628)
                      +..++.+.+.+. ++.....++.++ +|+.+.+..+ +. .++...+.. .+|+.+.+.. .+......+|..|++|+.+
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            344555554432 222223334443 4666666544 33 333333332 2566666654 3443444556666666666


Q ss_pred             ECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcC
Q 039739          366 DLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL  445 (628)
Q Consensus       366 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  445 (628)
                      +++++.+. .++...|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.. .+|+.+.+.+ .+
T Consensus       186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i  259 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV  259 (401)
T ss_dssp             ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred             ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence            66666655 55555554 466666666533 44444455556666666666543 33233344444 4555555532 23


Q ss_pred             CCccCccccCCCCcceEECCCCcCC-----CCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739          446 SGKIPRWLGNLTRLQHIMMPKNHLE-----GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL  520 (628)
Q Consensus       446 ~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  520 (628)
                      ......+|.+|++|+.+.+.++.+.     .....+|.+|++|+.+++.++                        + ..+
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~------------------------i-~~I  314 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES------------------------I-RIL  314 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT------------------------C-CEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc------------------------e-EEE
Confidence            3233445555555555555544332     123333444444444444321                        2 245


Q ss_pred             CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCC-CCcEEECCCCcc
Q 039739          521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNSL  589 (628)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~  589 (628)
                      +..+|.+|++|+.+.+..+ ++......|.++ +|+.+++.+|.+.......|..++ +++.|++..+.+
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            5555777777777777544 554455667777 777777777766655556666664 566666665443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.2e-13  Score=139.82  Aligned_cols=153  Identities=12%  Similarity=0.039  Sum_probs=72.2

Q ss_pred             hHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccc
Q 039739           49 QSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRIL  128 (628)
Q Consensus        49 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  128 (628)
                      .+|.. |.+|+.+.+..+ +. .+...+|.+|.+|+.+++..+   +..-....+.. |..|+.+.+..+ +..    +.
T Consensus        65 ~AF~~-c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~-c~~L~~i~~p~~-l~~----i~  132 (394)
T 4fs7_A           65 AAFQG-CRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS---VKMIGRCTFSG-CYALKSILLPLM-LKS----IG  132 (394)
T ss_dssp             TTTTT-CTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT---CCEECTTTTTT-CTTCCCCCCCTT-CCE----EC
T ss_pred             HHhhC-CCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC---ceEccchhhcc-cccchhhcccCc-eee----ec
Confidence            34444 555555555432 21 233335556666666655442   11111222333 555555544322 111    22


Q ss_pred             cccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCC
Q 039739          129 DRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFN  208 (628)
Q Consensus       129 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~  208 (628)
                      ..+|..+..++.......  .......|..|++|+.+.+..+. . .++..++..+.+|+.+.+..+ +. .+....+.+
T Consensus       133 ~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~  206 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAE  206 (394)
T ss_dssp             TTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTT
T ss_pred             ceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhcc
Confidence            234445443333222221  11223456666777777765543 2 455556677777777766654 21 334445666


Q ss_pred             CCcccEEeccC
Q 039739          209 HSRLKSFYADN  219 (628)
Q Consensus       209 l~~L~~L~l~~  219 (628)
                      +..|+.+.+..
T Consensus       207 ~~~L~~i~~~~  217 (394)
T 4fs7_A          207 CILLENMEFPN  217 (394)
T ss_dssp             CTTCCBCCCCT
T ss_pred             ccccceeecCC
Confidence            66666655543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=1e-14  Score=128.51  Aligned_cols=138  Identities=23%  Similarity=0.180  Sum_probs=94.8

Q ss_pred             CCcccEEEccCCcCC-CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEe
Q 039739          432 CFVLEGLFLNNNSLS-GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVH  510 (628)
Q Consensus       432 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  510 (628)
                      .++|++|++++|.+. +.++..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|++.                
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~----------------   84 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF----------------   84 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC----------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc----------------
Confidence            356666666666665 34555556666666666666665543  44555666666666666554                


Q ss_pred             cCCCcCcCCCCccccccCCCccEEECCCcccCCccc-hhhcCCCCCcEEECCCCcCCccCC---ccccCCCCCcEEECCC
Q 039739          511 LSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS-DWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSN  586 (628)
Q Consensus       511 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~  586 (628)
                             +.++.. +..+++|+.|++++|.+++... ..+..+++|+.|++++|++++..+   ..+..+++|++|++++
T Consensus        85 -------~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           85 -------GGLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             -------SCCCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             -------hHHHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence                   333332 5668889999999998886432 678888999999999999884433   3788899999999999


Q ss_pred             Cccccccccc
Q 039739          587 NSLHGSIPLC  596 (628)
Q Consensus       587 ~~~~~~ip~~  596 (628)
                      |.+. .+|+.
T Consensus       157 n~~~-~~~~~  165 (168)
T 2ell_A          157 REDQ-EAPDS  165 (168)
T ss_dssp             TTSC-BCCSS
T ss_pred             CChh-hcccc
Confidence            9887 67764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.2e-13  Score=139.73  Aligned_cols=314  Identities=15%  Similarity=0.113  Sum_probs=169.6

Q ss_pred             cccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCc
Q 039739          127 ILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPF  206 (628)
Q Consensus       127 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  206 (628)
                      +...+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ +. .++..++..+.+|+.+.+..+-.  .+....|
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~--~i~~~aF  136 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLK--SIGVEAF  136 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCC--EECTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCcee--eecceee
Confidence            33456666666666666543 43344455666666666666543 33 45555666666666655544311  1222333


Q ss_pred             CCCCcccEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcC
Q 039739          207 FNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN  286 (628)
Q Consensus       207 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  286 (628)
                      .++..++......                              ........+..|++|+.+.+..+..  .++...+..+
T Consensus       137 ~~~~~~~~~~~~~------------------------------~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c  184 (394)
T 4fs7_A          137 KGCDFKEITIPEG------------------------------VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGC  184 (394)
T ss_dssp             TTCCCSEEECCTT------------------------------CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTC
T ss_pred             ecccccccccCcc------------------------------ccccchhhhcccCCCcEEecCCccc--eeccccccCC
Confidence            3333222211111                              0111123455667777777754421  3444445667


Q ss_pred             ccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEE
Q 039739          287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD  366 (628)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  366 (628)
                      ++|+.+.+..+ ++.....++..+..|+.+.+..+..  .+.+.... ...|+.+.+.... +.....++..+..++.+.
T Consensus       185 ~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~-~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~  259 (394)
T 4fs7_A          185 GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALS-KTGVKNIIIPDSF-TELGKSVFYGCTDLESIS  259 (394)
T ss_dssp             TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTT-TCCCCEEEECTTC-CEECSSTTTTCSSCCEEE
T ss_pred             CCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhcc-cCCCceEEECCCc-eecccccccccccceeEE
Confidence            77777766543 3333344566677777766655422  22222222 4567777665432 223334566777777777


Q ss_pred             CcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC
Q 039739          367 LSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS  446 (628)
Q Consensus       367 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  446 (628)
                      +..+..  .+....+..+..++.+......+.   ...+..+.+|+.+.+..+ +......+|.+|.+|+.+++.++ +.
T Consensus       260 ~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          260 IQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             ECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             cCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence            766532  344555666777777666554332   234456677777776543 33344556667777777777543 44


Q ss_pred             CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccC
Q 039739          447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD  490 (628)
Q Consensus       447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  490 (628)
                      .....+|.+|.+|+.+.+..+ +......+|.+|++|+.+++..
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            344556777777777777655 4445555677777777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=3.1e-13  Score=135.84  Aligned_cols=249  Identities=12%  Similarity=0.087  Sum_probs=158.9

Q ss_pred             cCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcccc
Q 039739          309 SHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLE  388 (628)
Q Consensus       309 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  388 (628)
                      .+..++.+.+.+. ++ .++...+..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .+....|.+|++|+
T Consensus       111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred             ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence            3456666766543 33 3444333333 5777776554 443444456554 577777765 343 55556666677777


Q ss_pred             EEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCc
Q 039739          389 SLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH  468 (628)
Q Consensus       389 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  468 (628)
                      .+++..+.++......|. +.+|+.+.+..+ +......+|..|++|+.+++.++ +......+|.+ .+|+.+.+. +.
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            777776666554444444 466777776543 44344556666667777666653 33344445555 566666663 33


Q ss_pred             CCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739          469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW  548 (628)
Q Consensus       469 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  548 (628)
                      +......+|..|++|+.+++.++....                  +.. ..++..+|.+|++|+.+.+.+ .++......
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~------------------~~~-~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a  318 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFND------------------DPE-AMIHPYCLEGCPKLARFEIPE-SIRILGQGL  318 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCC------------------CTT-CEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccC------------------Ccc-cEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence            443445556666666666666554330                  001 247777799999999999995 477667788


Q ss_pred             hcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccc
Q 039739          549 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG  591 (628)
Q Consensus       549 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  591 (628)
                      |.++++|+.+++..+ ++......|.++ +|+.+++.++....
T Consensus       319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            999999999999655 775678899999 99999999998874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=3e-14  Score=125.42  Aligned_cols=140  Identities=22%  Similarity=0.150  Sum_probs=116.6

Q ss_pred             CCCCCcEEEccCccCc-CcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCE
Q 039739          407 NLTNLRWLQLEGNHFV-GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI  485 (628)
Q Consensus       407 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  485 (628)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4588999999999997 56788889999999999999999855  78899999999999999999777777878999999


Q ss_pred             EEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc---hhhcCCCCCcEEECCC
Q 039739          486 LDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS---DWVDGLSQLSHLILGH  562 (628)
Q Consensus       486 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~  562 (628)
                      |++++|++.+..                       ....+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus       100 L~Ls~N~l~~~~-----------------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          100 LNLSGNKLKDIS-----------------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             EECBSSSCCSSG-----------------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             EeccCCccCcch-----------------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            999999886321                       11226778889999999999886655   4788899999999999


Q ss_pred             CcCCccCCcc
Q 039739          563 NNLEGEVPVQ  572 (628)
Q Consensus       563 ~~i~~~~~~~  572 (628)
                      |.+. ..|+.
T Consensus       157 n~~~-~~~~~  165 (168)
T 2ell_A          157 REDQ-EAPDS  165 (168)
T ss_dssp             TTSC-BCCSS
T ss_pred             CChh-hcccc
Confidence            9887 56654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=1e-13  Score=124.77  Aligned_cols=130  Identities=24%  Similarity=0.317  Sum_probs=74.5

Q ss_pred             cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcc-cccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCC
Q 039739          436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKN  514 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  514 (628)
                      ++++++++.+. .+|..+.  .++++|++++|.+.+..+. .+..+++|++|++++|++++..+..              
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------   73 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--------------   73 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--------------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH--------------
Confidence            56777777664 4444333  2667777777776654443 3666667777777766666443333              


Q ss_pred             cCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccc
Q 039739          515 MLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGS  592 (628)
Q Consensus       515 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  592 (628)
                                +..+++|+.|++++|++++..+..|..+++|+.|++++|++++..|+.|..+++|++|++++|++...
T Consensus        74 ----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           74 ----------FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ----------TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ----------cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence                      44555555555555555554444555555555555555555555555555555555555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=4.7e-14  Score=121.44  Aligned_cols=128  Identities=23%  Similarity=0.219  Sum_probs=76.3

Q ss_pred             CcccEEEccCCcCC-CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEec
Q 039739          433 FVLEGLFLNNNSLS-GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHL  511 (628)
Q Consensus       433 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  511 (628)
                      +++++|++++|.+. +..+..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.                 
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~-----------------   77 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS-----------------   77 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC-----------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc-----------------
Confidence            44555555555554 33444444455555555555544433  33444444444444444443                 


Q ss_pred             CCCcCcCCCCccccccCCCccEEECCCcccCCc-cchhhcCCCCCcEEECCCCcCCccCC---ccccCCCCCcEEECCC
Q 039739          512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN-ISDWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSN  586 (628)
Q Consensus       512 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~  586 (628)
                            +.++.. +..+++|+.|++++|.+++. .+..++.+++|+.|++++|++++..+   ..+..+++|++|++++
T Consensus        78 ------~~~~~~-~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           78 ------GGLEVL-AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ------SCTHHH-HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ------chHHHH-hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence                  333332 55677888888888887753 33677888888888888888874433   4677788888887753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=3.5e-16  Score=164.70  Aligned_cols=184  Identities=22%  Similarity=0.174  Sum_probs=123.9

Q ss_pred             CCCCCcEEEccCccCcCcccccccCCCcccEEEccCCc-------------CCCccCccccCCCCcceEE-CCCCcCCCC
Q 039739          407 NLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-------------LSGKIPRWLGNLTRLQHIM-MPKNHLEGP  472 (628)
Q Consensus       407 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~  472 (628)
                      .++.|+.|++++|.+. .+|..+..+++|+.|++++|.             ..+..+..+.++++|+.|+ ++.+.+...
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            4555556666665554 455555556666666554442             3334455566666666666 444322110


Q ss_pred             Ccc-----ccc--CCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCcc
Q 039739          473 IPV-----EFC--QLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNI  545 (628)
Q Consensus       473 ~~~-----~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  545 (628)
                      ...     .+.  ....|+.|++++|.+++ +|....+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+++ +
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~-l  501 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN-V  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-C
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-C
Confidence            000     000  11257888888888875 455444778888888888886 66665 8889999999999999986 5


Q ss_pred             chhhcCCCCCcEEECCCCcCCccC-CccccCCCCCcEEECCCCcccccccccc
Q 039739          546 SDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNSLHGSIPLCL  597 (628)
Q Consensus       546 ~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~ip~~~  597 (628)
                      | .++.+++|+.|++++|++++.. |..|..+++|+.|++++|++.+ +|+..
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~  552 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQ  552 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCT
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-CccHH
Confidence            5 7889999999999999998665 8899999999999999999984 45443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=1.4e-15  Score=159.99  Aligned_cols=180  Identities=18%  Similarity=0.211  Sum_probs=95.5

Q ss_pred             ccCCccCEEEccCCcCCcccchhhhhhCCCccEEEccccc-------------CCCcccccccCCCCccEEE-CcCCccc
Q 039739          308 HSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNA-------------LDGSIPSSFGNMKFLQILD-LSNNHLT  373 (628)
Q Consensus       308 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~  373 (628)
                      ..++.|+.|++++|.+. .+|..+.. +++|+.|++++|.             ..+..|..+..+++|+.|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            35667777777777765 67766665 6677777765543             2334455555566666665 4443322


Q ss_pred             Cccchhhh-----c--CCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC
Q 039739          374 GEIPEHLV-----V--GCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS  446 (628)
Q Consensus       374 ~~~~~~~~-----~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  446 (628)
                       .++...+     .  ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|++|++++|.++
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             1111000     0  012355555555555542 22 455555555555555555 44555555555555555555555


Q ss_pred             CccCccccCCCCcceEECCCCcCCCCC-cccccCCCCCCEEEccCCcCcC
Q 039739          447 GKIPRWLGNLTRLQHIMMPKNHLEGPI-PVEFCQLDWLQILDISDNNISG  495 (628)
Q Consensus       447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  495 (628)
                      + +| .+.++++|+.|++++|.+.+.. |..+..+++|+.|++++|++++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            3 33 4555555555555555555443 5555555555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=4.2e-13  Score=119.17  Aligned_cols=114  Identities=28%  Similarity=0.286  Sum_probs=74.1

Q ss_pred             CCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEEC
Q 039739          457 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDL  536 (628)
Q Consensus       457 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  536 (628)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.                        .++...+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ------------------------SLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC------------------------CCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce------------------------EeChhHccCCCccCEEEC
Confidence            34555555555554433334445555555555555443                        333333667778888888


Q ss_pred             CCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccccccc
Q 039739          537 SYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIP  594 (628)
Q Consensus       537 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip  594 (628)
                      ++|++++.++..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8888876666667788888888888888885444456778888888888888876544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=7.5e-14  Score=125.62  Aligned_cols=129  Identities=22%  Similarity=0.292  Sum_probs=89.9

Q ss_pred             cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccc-cccCCCCCcEEEccCccCcCcccccccCCCcccEEEcc
Q 039739          363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFS-RNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  441 (628)
Q Consensus       363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  441 (628)
                      +.++++++.+. .+|..+   .+++++|++++|.+...... .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            45666666664 555433   23667777777766654443 35667777777777777776667777777777777777


Q ss_pred             CCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcC
Q 039739          442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG  495 (628)
Q Consensus       442 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  495 (628)
                      +|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            777776666667777777777777777776667777777778888887777764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=5.1e-13  Score=120.05  Aligned_cols=42  Identities=36%  Similarity=0.305  Sum_probs=22.1

Q ss_pred             cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      |..+++|+.|++++|.++...+..|..+++|+.|++++|++.
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            444555555555555555444444555555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.46  E-value=9.2e-14  Score=119.58  Aligned_cols=131  Identities=21%  Similarity=0.137  Sum_probs=109.6

Q ss_pred             CCCCCcEEEccCccCc-CcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCE
Q 039739          407 NLTNLRWLQLEGNHFV-GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI  485 (628)
Q Consensus       407 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  485 (628)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+.++++|++|++++|.+.+..|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            4578999999999998 67888889999999999999999855  77899999999999999999777877888999999


Q ss_pred             EEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccc---hhhcCCCCCcEEECCC
Q 039739          486 LDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNIS---DWVDGLSQLSHLILGH  562 (628)
Q Consensus       486 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~  562 (628)
                      |++++|++++..                      .+. .+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~----------------------~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLS----------------------TIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHH----------------------HHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChH----------------------HHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999876310                      112 26778889999999998886655   5788889999988763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=3e-14  Score=154.94  Aligned_cols=111  Identities=27%  Similarity=0.334  Sum_probs=50.4

Q ss_pred             CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEE
Q 039739          384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIM  463 (628)
Q Consensus       384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  463 (628)
                      ++.|+.|++++|.+.. .+..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.++++|++|+
T Consensus       223 l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            4444444444444432 2222234444444444444444 34444444444555555554444 3344444455555555


Q ss_pred             CCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCC
Q 039739          464 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP  498 (628)
Q Consensus       464 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  498 (628)
                      +++|.+. .+|..|..+++|+.|++++|++.+..|
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence            5555444 333344455555555555554444333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=3.9e-14  Score=154.00  Aligned_cols=178  Identities=21%  Similarity=0.240  Sum_probs=93.4

Q ss_pred             cccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCC
Q 039739          402 FSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD  481 (628)
Q Consensus       402 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  481 (628)
                      ...+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+.++++|+.|++++|.+. .+|..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            445567778888888888776 55655667788888888888777 66777777888888888888877 5577777788


Q ss_pred             CCCEEEccCCcCcCCCCCCC-CCCcccEEecCCCcCcCCCCccccccC-CCccEEECCCcccCCccchhhcCCCCCcEEE
Q 039739          482 WLQILDISDNNISGSLPSCF-HPLSVEQVHLSKNMLHGQLKRGTFFNS-YSLVTLDLSYNRLNGNISDWVDGLSQLSHLI  559 (628)
Q Consensus       482 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  559 (628)
                      +|++|++++|.+. .+|..+ .+++|+.|+|++|.+.+.++.. +... ..+..|++++|.+++.+|..      |+.|+
T Consensus       294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~  365 (727)
T 4b8c_D          294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE  365 (727)
T ss_dssp             TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred             CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence            8888888888776 334333 3666777777777766555443 2221 11223556666666555543      33444


Q ss_pred             CCCC--------cCCccCCccccCCCCCcEEECCCCccc
Q 039739          560 LGHN--------NLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       560 l~~~--------~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      +++|        .+....+..+.++..++...+++|-+.
T Consensus       366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ------------------------------------CCC
T ss_pred             eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            5444        223233333444455555556666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=4.6e-13  Score=118.73  Aligned_cols=105  Identities=21%  Similarity=0.225  Sum_probs=72.6

Q ss_pred             CCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch--hhcCCCCCcEEE
Q 039739          482 WLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD--WVDGLSQLSHLI  559 (628)
Q Consensus       482 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~  559 (628)
                      +|+.|++++|.+.+. +....++.|+.|++++|.+. .+++..+..+++|+.|++++|.++. +|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence            444444444444432 22222444555555555553 3444445788999999999999874 444  788899999999


Q ss_pred             CCCCcCCccCCcc----ccCCCCCcEEECCCCccc
Q 039739          560 LGHNNLEGEVPVQ----LCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       560 l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~~~  590 (628)
                      +++|+++ .+|..    +..+++|+.|++++|+..
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999998 66764    888999999999998876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=2.4e-12  Score=115.69  Aligned_cols=126  Identities=24%  Similarity=0.238  Sum_probs=73.8

Q ss_pred             EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCC
Q 039739          364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN  443 (628)
Q Consensus       364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  443 (628)
                      .++++++.+. .+|..+   .++|++|++++|.++. .+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus        14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4555555554 444332   3455666666665543 2244555666666666666666555555666666666666666


Q ss_pred             cCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       444 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      .+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666555556666666666666666666544445666666666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=3.8e-12  Score=112.95  Aligned_cols=128  Identities=23%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             cEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccC
Q 039739          363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  442 (628)
Q Consensus       363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  442 (628)
                      +.++++++.+. .+|...   .++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            44555555544 444322   34555566665555544444445556666666666665544444455566666666666


Q ss_pred             CcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       443 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            6665444445555666666666666665444444555666666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.34  E-value=1.2e-10  Score=117.75  Aligned_cols=131  Identities=14%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             ccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCC
Q 039739          354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCF  433 (628)
Q Consensus       354 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  433 (628)
                      .+|..|..|+.+.+.....  .+....+.+++.|+.+.+.. .++......|.+|.+|+.+.+..+ ++.+...+|.+|.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            3455666666666654322  34445555566666666642 333344455566666666666543 3333445666777


Q ss_pred             cccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCc
Q 039739          434 VLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN  492 (628)
Q Consensus       434 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  492 (628)
                      +|+.+.+..+ +......+|.+|++|+.+++.++...   ...+..+..|+.+.+..+.
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            7777777543 44345566777777777777765432   1345566677777766553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=3.3e-12  Score=113.11  Aligned_cols=133  Identities=19%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739          356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL  435 (628)
Q Consensus       356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  435 (628)
                      +..+++|+.|++++|.+. .++. +....++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            455667777777777776 4443 222234778888887777653  566677788888888887775444445777788


Q ss_pred             cEEEccCCcCCCccCc--cccCCCCcceEECCCCcCCCCCcc----cccCCCCCCEEEccCCcCc
Q 039739          436 EGLFLNNNSLSGKIPR--WLGNLTRLQHIMMPKNHLEGPIPV----EFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~  494 (628)
                      ++|++++|.+. ..+.  .+..+++|++|++++|.+.. .|.    .+..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888888775 3343  67777888888888887763 333    3677788888888777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=1.7e-14  Score=130.72  Aligned_cols=131  Identities=24%  Similarity=0.323  Sum_probs=78.6

Q ss_pred             cccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCC
Q 039739          452 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYS  530 (628)
Q Consensus       452 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~  530 (628)
                      .+..+++|++|++++|.+.+ .| .+..+++|+.|++++|.+. ..|..+. +++|+.|++++|++.+ ++ . +..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-G-IEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-H-HHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-c-cccCCC
Confidence            34444444455554444443 22 4444555555555555544 2222221 3455555555555533 33 2 667788


Q ss_pred             ccEEECCCcccCCccc-hhhcCCCCCcEEECCCCcCCccCCc----------cccCCCCCcEEECCCCccc
Q 039739          531 LVTLDLSYNRLNGNIS-DWVDGLSQLSHLILGHNNLEGEVPV----------QLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       531 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~----------~l~~l~~L~~L~l~~~~~~  590 (628)
                      |+.|++++|.+++..+ ..+..+++|+.|++++|++++..|.          .+..+++|+.|+  +++++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888888888875433 4678888888888888888755444          277888888887  66665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.31  E-value=7.5e-11  Score=119.18  Aligned_cols=293  Identities=14%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             ccccCC-CccEEEccCCcccCcCchhHHhcCccCcEEEeecCC---CCCCCCcccccCCccCEEEccCCcCCcccchhhh
Q 039739          257 FLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDS---LGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIG  332 (628)
Q Consensus       257 ~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  332 (628)
                      ++..++ .|+.+.+... +. .+...-|.+|++|+.+.+..+.   ++.....++..|..|+.+.+..+ +. .++...+
T Consensus        58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred             hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence            344453 4677766543 22 3333334666777777665432   33334445666666666655443 22 3333333


Q ss_pred             hhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCc
Q 039739          333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLR  412 (628)
Q Consensus       333 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  412 (628)
                      ..+.+|+.+.+... +.......+..+.+|+.+.+..+ +. .+....|. ...|+.+.+... ........+..+.+++
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~  208 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALS  208 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCc-ccccccchhhhccccc
Confidence            34566666666533 22233345666666666666543 22 34444443 345666665433 2223334444555555


Q ss_pred             EEEccCccCcCcccccc-------------cCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccC
Q 039739          413 WLQLEGNHFVGEIPQSL-------------SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ  479 (628)
Q Consensus       413 ~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  479 (628)
                      ................+             .....+..+.+.+. +......+|.++..|+.+.+.+.... .....|.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~  286 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN  286 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCccccc
Confidence            55544332221100000             11112222222211 11122334555555555555543322 33444555


Q ss_pred             CCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEE
Q 039739          480 LDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLI  559 (628)
Q Consensus       480 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  559 (628)
                      ++.|+.+.+.. .+.                        .++..+|.+|.+|+.+.+..+ ++.....+|.++++|+.+.
T Consensus       287 c~~L~~i~l~~-~i~------------------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          287 CPALQDIEFSS-RIT------------------------ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             CTTCCEEECCT-TCC------------------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccCCC-ccc------------------------ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            55555555532 222                        344444555555555555432 3323334455555555555


Q ss_pred             CCCCcCCccCCccccCCCCCcEEECCCC
Q 039739          560 LGHNNLEGEVPVQLCKLNQLQLLDLSNN  587 (628)
Q Consensus       560 l~~~~i~~~~~~~l~~l~~L~~L~l~~~  587 (628)
                      +..+ ++......|.+|++|+.+++.++
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            5322 33233444555555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=4.8e-13  Score=133.15  Aligned_cols=165  Identities=18%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             CCCcEEecCCCCCCCcchhHhhcc----CCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhh--
Q 039739           31 TNLEYLTLDSSSLHISLLQSIASI----FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIG--  104 (628)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--  104 (628)
                      ++|++|++++|.++......++..    +++|+.|++++|.+...........+++|++|+|++|  .+.+.....++  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n--~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN--SLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS--CCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC--CCCHHHHHHHHHH
Confidence            344455555554443333333321    1345555555544432211111223344555555555  33322222221  


Q ss_pred             --ccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccccc----CchhhhcCCCCCEEEccccccccc---
Q 039739          105 --ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGS----LPWCLANMTSLRILDVSSNQLTGS---  175 (628)
Q Consensus       105 --~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~---  175 (628)
                        ...++|++|++++|.++..+.......+..+++|++|+|++|.+.+.    ++..+..+++|++|++++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              11345555555555553222222223344555566666666655432    233444555666666666655421   


Q ss_pred             -cCCCCCCCCCcccEEEcccCeee
Q 039739          176 -ISSSPLVHLTSIEELYLSNNHFQ  198 (628)
Q Consensus       176 -l~~~~l~~l~~L~~L~l~~~~~~  198 (628)
                       +.. .+...++|++|++++|.++
T Consensus       230 ~l~~-~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALAR-AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHH-HHHHCSSCCEEECTTSSCC
T ss_pred             HHHH-HHHhCCCCCEEeccCCCCC
Confidence             111 2334455666666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.26  E-value=3.5e-11  Score=105.55  Aligned_cols=104  Identities=26%  Similarity=0.302  Sum_probs=72.3

Q ss_pred             CEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739          484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN  563 (628)
Q Consensus       484 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  563 (628)
                      +.++++++.++. +|..+ +..++.|++++|.+.+..+ ..+..+++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            455555555542 22222 3555666666666643333 33777888888888888888777777788888888888888


Q ss_pred             cCCccCCccccCCCCCcEEECCCCccc
Q 039739          564 NLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       564 ~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      ++++..++.|..+++|++|++++|++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            888555556888888888888888887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.25  E-value=2.6e-13  Score=122.95  Aligned_cols=151  Identities=16%  Similarity=0.213  Sum_probs=91.5

Q ss_pred             cccCCCCcEEecCCCCCCCcchh------HhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchh
Q 039739           27 LHNFTNLEYLTLDSSSLHISLLQ------SIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFL  100 (628)
Q Consensus        27 ~~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  100 (628)
                      +...+.++.++++.+.+++..+.      .+.. +++|++|++++|.+.. ++  .+.++++|++|++++|.  +. .++
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~--l~-~l~   86 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNL--IK-KIE   86 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEE--EC-SCS
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCC--cc-ccc
Confidence            44455666666666555554443      6666 7777777777776665 33  56777777777777773  32 344


Q ss_pred             hhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCc-hhhhcCCCCCEEEccccccccccCCC
Q 039739          101 QIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSS  179 (628)
Q Consensus       101 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~~  179 (628)
                      ..+.. +++|++|++++|.+..    ++  .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|..
T Consensus        87 ~~~~~-~~~L~~L~L~~N~l~~----l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           87 NLDAV-ADTLEELWISYNQIAS----LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             SHHHH-HHHCSEEEEEEEECCC----HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             chhhc-CCcCCEEECcCCcCCc----CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence            44444 6677777777776654    43  46667777777777777663221 35666777777777777765443320


Q ss_pred             ---------CCCCCCcccEEE
Q 039739          180 ---------PLVHLTSIEELY  191 (628)
Q Consensus       180 ---------~l~~l~~L~~L~  191 (628)
                               .+..+++|+.|+
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEEC
T ss_pred             cchHHHHHHHHHhCCCcEEEC
Confidence                     144555666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4.2e-11  Score=105.43  Aligned_cols=114  Identities=21%  Similarity=0.238  Sum_probs=77.2

Q ss_pred             CEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCC
Q 039739          484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHN  563 (628)
Q Consensus       484 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  563 (628)
                      +.++++++.+. .+|..+ +..++.|++++|++.+..+ ..+..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~-~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI-PTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCc-CCCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            44555555554 233222 2555666666666643333 33777888888888888888766666788888888999888


Q ss_pred             cCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739          564 NLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       564 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~  601 (628)
                      +++...+..|..+++|++|++++|++. ..|..+..+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~~~~~l~  128 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD-CECRDIMYLR  128 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC-TTBGGGHHHH
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc-cccccHHHHH
Confidence            888444445888888999999988888 5665554433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=1.3e-10  Score=101.85  Aligned_cols=104  Identities=26%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCc
Q 039739          436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNM  515 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  515 (628)
                      +.++++++.+. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|+++                     
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~---------------------   67 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT---------------------   67 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC---------------------
Confidence            34444444443 2232221  44555555555555444445555555555555555544                     


Q ss_pred             CcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          516 LHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       516 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                         .++...|..+++|+.|++++|++++..+..|..+++|+.|++++|+++
T Consensus        68 ---~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           68 ---VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ---ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence               233333555666666666666666555555666666666666666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=9.6e-13  Score=130.99  Aligned_cols=168  Identities=19%  Similarity=0.188  Sum_probs=100.1

Q ss_pred             CCCCceEecccccccccccCCCcc-----ccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcccc
Q 039739           55 FPSLKNLSMIGCEVNGLVRGQGFP-----HFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILD  129 (628)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  129 (628)
                      .++|+.|++++|.++..... .+.     ..++|++|+|++|  .+.+.....+...+++|++|++++|.++..+.....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLASC--QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECTTC--CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEecCC--CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            56777888877776543221 222     2257778888777  454444555554467778888887777442222222


Q ss_pred             ccc-cCCCCCcEEEccCCccccc----CchhhhcCCCCCEEEccccccccc----cCCCCCCCCCcccEEEcccCeeeee
Q 039739          130 RGL-CSLVHLQVLNIAYNDLRGS----LPWCLANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELYLSNNHFQIP  200 (628)
Q Consensus       130 ~~l-~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----l~~~~l~~l~~L~~L~l~~~~~~~~  200 (628)
                      ..+ ...++|++|+|++|.+.+.    ++..+..+++|++|++++|.+.+.    +.. .+...++|++|++++|.++..
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence            223 2467788888887777542    334446677788888887776521    122 355566778888887776531


Q ss_pred             c---CCCCcCCCCcccEEeccCCcccccc
Q 039739          201 I---SLEPFFNHSRLKSFYADNNEINAEI  226 (628)
Q Consensus       201 ~---~~~~l~~l~~L~~L~l~~~~~~~~~  226 (628)
                      .   ....+...+.|++|++++|.+.+..
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            1   1122334567788888777776543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.18  E-value=1.8e-10  Score=101.39  Aligned_cols=104  Identities=26%  Similarity=0.295  Sum_probs=57.6

Q ss_pred             cEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCc
Q 039739          436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNM  515 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  515 (628)
                      +.++++++.+. .+|..+.  ++|+.|++++|.+.+..|..|..+++|+.|++++|++++                    
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------   71 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--------------------   71 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--------------------
Confidence            34445544443 3333332  455555555555554445555555555555555555542                    


Q ss_pred             CcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          516 LHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       516 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                          ++...+..+++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus        72 ----i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           72 ----IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ----cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence                33333555666666666666666554445666667777777777666

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.14  E-value=1e-08  Score=102.97  Aligned_cols=61  Identities=18%  Similarity=0.267  Sum_probs=27.0

Q ss_pred             cccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEcc
Q 039739          428 SLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS  489 (628)
Q Consensus       428 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  489 (628)
                      +|..|.+|+.+.+.++.+......+|.+|.+|+.+.+..+ +......+|.+|++|+.+.+.
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            3444444444444444443333344444444554444432 222333445555555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=1.5e-08  Score=101.68  Aligned_cols=118  Identities=15%  Similarity=0.180  Sum_probs=58.3

Q ss_pred             CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739          335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL  414 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  414 (628)
                      +..|+.+.+..+ ++.....++..+.+|+.+.+..+ +. .++...|.+|.+|+.+.+.++.++.....+|.+|.+|+.+
T Consensus       239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            444555554432 22222334555555555555432 22 4444455555666666655554544444555556666666


Q ss_pred             EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCC
Q 039739          415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT  457 (628)
Q Consensus       415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  457 (628)
                      .+..+ ++.+...+|.+|.+|+.+.+..+ +......+|.++.
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            65432 33233455666666666665443 3323344555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=3.9e-09  Score=103.95  Aligned_cols=186  Identities=16%  Similarity=0.223  Sum_probs=112.5

Q ss_pred             CCCCEEeCCCCCCCC------ccchhhhcccCCCCcEEecCCCCCC---------CcchhHhhccCCCCceEeccccccc
Q 039739            5 PSLNTLYLSSNNFTD------IATATQELHNFTNLEYLTLDSSSLH---------ISLLQSIASIFPSLKNLSMIGCEVN   69 (628)
Q Consensus         5 ~~L~~L~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~l~~~~~~L~~L~l~~~~~~   69 (628)
                      +.++.|.+......+      +..+.+++.++++|+.|.+.+....         +.....+.. +|+|+.|+++++...
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~-~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA-MPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT-CTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhc-CCCCcEEEEeCCCCc
Confidence            456777777655431      1124555677899999998664321         123344455 899999999887321


Q ss_pred             ccccCCCccccCccceeecccchhhcCcchhhhhhc-cCCCccEEeeccc--cC-CCCCCccccccc--cCCCCCcEEEc
Q 039739           70 GLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGE-SMPSLKYLSLFGS--IL-GTNSSRILDRGL--CSLVHLQVLNI  143 (628)
Q Consensus        70 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~--~~-~~~~~~~~~~~l--~~l~~L~~L~L  143 (628)
                       ..+  .+ .+++|++|++..+  .+.......++. .+++|++|+|+.+  .. +...+......+  ..+++|++|++
T Consensus       186 -~l~--~~-~~~~L~~L~L~~~--~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L  259 (362)
T 2ra8_A          186 -SIG--KK-PRPNLKSLEIISG--GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI  259 (362)
T ss_dssp             -BCC--SC-BCTTCSEEEEECS--BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred             -eec--cc-cCCCCcEEEEecC--CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence             122  23 3789999999888  455555555552 3899999988632  11 221111111122  24788888888


Q ss_pred             cCCcccccCchhhh---cCCCCCEEEccccccccc----cCCCCCCCCCcccEEEcccCeee
Q 039739          144 AYNDLRGSLPWCLA---NMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELYLSNNHFQ  198 (628)
Q Consensus       144 ~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~----l~~~~l~~l~~L~~L~l~~~~~~  198 (628)
                      .+|.+.+..+..+.   .+++|++|+++.|.+.+.    ++. .+..+++|+.|+++.|.++
T Consensus       260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred             CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence            88877654333333   467788888887777532    233 3455677777777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=8.7e-09  Score=102.14  Aligned_cols=89  Identities=27%  Similarity=0.324  Sum_probs=49.8

Q ss_pred             ccCCCCcceEECCC-CcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCc
Q 039739          453 LGNLTRLQHIMMPK-NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSL  531 (628)
Q Consensus       453 ~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  531 (628)
                      +..+++|++|+|++ |.+....+..|..+++|+.|++++|++.                        .+++.+|.++++|
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~------------------------~~~~~~~~~l~~L   82 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------------------FVAPDAFHFTPRL   82 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC------------------------EECTTGGGSCSCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc------------------------eeCHHHhcCCcCC
Confidence            44445555555553 4444444444444455555544444443                        2333336667777


Q ss_pred             cEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          532 VTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       532 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      +.|+|++|++++.++..+..++ |+.|++.+|++.
T Consensus        83 ~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            7777777777755555555554 777777777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.78  E-value=8.2e-09  Score=102.35  Aligned_cols=103  Identities=22%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             EEEccCC-ccCCcccccccCCCCCcEEEccC-ccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCC
Q 039739          389 SLALSNN-SLEGHMFSRNFNLTNLRWLQLEG-NHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPK  466 (628)
Q Consensus       389 ~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  466 (628)
                      .++++++ .++. .+. +..+++|+.|++++ |.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3566665 5654 333 66677777777775 777655556677777777777777777766666777777777777777


Q ss_pred             CcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          467 NHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       467 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      |.+....+..+..++ |+.|++.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            777755555555544 777777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=5.7e-09  Score=102.76  Aligned_cols=41  Identities=29%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             CCCccEEECCCcccCCcc----chhhcCCCCCcEEECCCCcCCcc
Q 039739          528 SYSLVTLDLSYNRLNGNI----SDWVDGLSQLSHLILGHNNLEGE  568 (628)
Q Consensus       528 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~~  568 (628)
                      +++|+.|+|+.|.+.+..    +..+..+++|+.|++++|.++..
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            455566666555554322    22223345566666665555533

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=5.3e-09  Score=92.85  Aligned_cols=126  Identities=17%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             hhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcc---
Q 039739           23 ATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTS---   98 (628)
Q Consensus        23 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---   98 (628)
                      +...+..++.|++|+|++| .+.+.....++.                      .+...++|++|+|++|  .+.+.   
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~----------------------~L~~~~~L~~L~Ls~n--~i~~~g~~   83 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE----------------------ALKTNTYVKKFSIVGT--RSNDPVAF   83 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHH----------------------HHTTCCSCCEEECTTS--CCCHHHHH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH----------------------HHHhCCCcCEEECcCC--CCChHHHH
Confidence            4455666777777777777 776655555544                      2333455555555555  23222   


Q ss_pred             -hhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEc--cCCccccc----CchhhhcCCCCCEEEccccc
Q 039739           99 -FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNI--AYNDLRGS----LPWCLANMTSLRILDVSSNQ  171 (628)
Q Consensus        99 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~  171 (628)
                       +...+.. .++|++|++++|.++..++....+++...+.|++|++  ++|.+...    +...+...++|++|++++|.
T Consensus        84 ~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           84 ALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHh-CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence             2233333 5667777777776655444444456666677777777  66666543    23344555677777777766


Q ss_pred             cc
Q 039739          172 LT  173 (628)
Q Consensus       172 ~~  173 (628)
                      +.
T Consensus       163 i~  164 (185)
T 1io0_A          163 QG  164 (185)
T ss_dssp             HH
T ss_pred             CC
Confidence            53

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.70  E-value=4.1e-09  Score=93.60  Aligned_cols=124  Identities=15%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             CCCCCCCEEeCCCC-CCCC--ccchhhhcccCCCCcEEecCCCCCCCcchhHhhcc---CCCCceEecccccccccccCC
Q 039739            2 GSFPSLNTLYLSSN-NFTD--IATATQELHNFTNLEYLTLDSSSLHISLLQSIASI---FPSLKNLSMIGCEVNGLVRGQ   75 (628)
Q Consensus         2 ~~l~~L~~L~l~~~-~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~   75 (628)
                      ...+.|++|+|++| .+..  +..+...+...++|++|+|++|.+.+.....++..   .++|++|+|++|.+.....  
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~--  110 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI--  110 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH--
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH--
Confidence            45789999999999 8854  33466778888999999999999987766666552   3455555555555443210  


Q ss_pred             CccccCccceeecccchhhcCcchhhhhhccCCCccEEee--ccccCCCCCCccccccccCCCCCcEEEccCCccc
Q 039739           76 GFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSL--FGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR  149 (628)
Q Consensus        76 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  149 (628)
                                           ..+...+.. .++|++|++  ++|.++..+.....+.+...++|++|++++|.+.
T Consensus       111 ---------------------~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 ---------------------LALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             ---------------------HHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             ---------------------HHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                                 012233333 455666666  5555544333333345556667777777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=2e-08  Score=86.34  Aligned_cols=87  Identities=10%  Similarity=0.130  Sum_probs=65.2

Q ss_pred             CCCCcEEecCCCCCCCcchhHhhccCCCCceEeccccc-ccccccCCCccc----cCccceeecccchhhcCcchhhhhh
Q 039739           30 FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCE-VNGLVRGQGFPH----FKSLEHLDMEGALIALNTSFLQIIG  104 (628)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~  104 (628)
                      -.+|++|++++|.+++.....+.. |++|++|+|++|. +++.... .+..    +++|++|++++|. .+.+.....+.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~-~ITD~Gl~~L~  136 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCG-NVTDKGIIALH  136 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCT-TCCHHHHHHGG
T ss_pred             CceEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCC-cCCHHHHHHHh
Confidence            456888999888888888888877 8899999998885 5543221 2333    3478899998885 46666677777


Q ss_pred             ccCCCccEEeeccccC
Q 039739          105 ESMPSLKYLSLFGSIL  120 (628)
Q Consensus       105 ~~~~~L~~L~l~~~~~  120 (628)
                      + +++|++|++++|..
T Consensus       137 ~-~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          137 H-FRNLKYLFLSDLPG  151 (176)
T ss_dssp             G-CTTCCEEEEESCTT
T ss_pred             c-CCCCCEEECCCCCC
Confidence            7 89999999998864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=2.1e-07  Score=80.04  Aligned_cols=86  Identities=7%  Similarity=0.030  Sum_probs=51.7

Q ss_pred             CCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhcc---CCCccEEeecccc-CCCCCCcccccc
Q 039739           56 PSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGES---MPSLKYLSLFGSI-LGTNSSRILDRG  131 (628)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~~~~~  131 (628)
                      .+|++|++++|.++..... .+.++++|++|+|++|. .+.+.....++..   +++|++|++++|. +++    .-...
T Consensus        61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~-~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----~Gl~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCH-YIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----KGIIA  134 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCT-TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH----HHHHH
T ss_pred             ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCC-ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH----HHHHH
Confidence            3577777777766544332 45667777777777774 3555555555541   2467777777765 344    11123


Q ss_pred             ccCCCCCcEEEccCCc
Q 039739          132 LCSLVHLQVLNIAYND  147 (628)
Q Consensus       132 l~~l~~L~~L~L~~~~  147 (628)
                      +..+++|++|++++|.
T Consensus       135 L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGGCTTCCEEEEESCT
T ss_pred             HhcCCCCCEEECCCCC
Confidence            5567777777777775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.06  E-value=4e-06  Score=77.97  Aligned_cols=101  Identities=23%  Similarity=0.227  Sum_probs=64.7

Q ss_pred             EeCCCCCCCCccc-hhhhcccCCCCcEEecCCCCCCC--cchhHhhccCCCCceEecccccccccccCCCccccCcccee
Q 039739           10 LYLSSNNFTDIAT-ATQELHNFTNLEYLTLDSSSLHI--SLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL   86 (628)
Q Consensus        10 L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   86 (628)
                      ++++.|....+.. +.....++++|++|+|++|.+++  ..+..+.. +++|+.|+|++|.+.+......+..+ +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERELDKIKGL-KLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSGGGGGGGTTS-CCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCchhhhhcccC-CcceE
Confidence            5556664322222 12223568889999999998876  33455666 89999999999888754221123333 89999


Q ss_pred             ecccchhhcCcch-------hhhhhccCCCccEEee
Q 039739           87 DMEGALIALNTSF-------LQIIGESMPSLKYLSL  115 (628)
Q Consensus        87 ~l~~~~~~~~~~~-------~~~~~~~~~~L~~L~l  115 (628)
                      ++++|+  +.+..       ...+.. +++|+.|+-
T Consensus       226 ~L~~Np--l~~~~~~~~~y~~~il~~-~P~L~~LDg  258 (267)
T 3rw6_A          226 WLDGNS--LCDTFRDQSTYISAIRER-FPKLLRLDG  258 (267)
T ss_dssp             ECTTST--TGGGCSSHHHHHHHHHHH-CTTCCEESS
T ss_pred             EccCCc--CccccCcchhHHHHHHHH-CcccCeECC
Confidence            999984  33322       234555 999999974

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.88  E-value=1.1e-05  Score=74.88  Aligned_cols=82  Identities=23%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             cCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCC--CC
Q 039739          478 CQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLS--QL  555 (628)
Q Consensus       478 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L  555 (628)
                      ..+++|+.|++++|++.+..                     .++.. +..+++|+.|+|++|.+.+.  ..+..++  +|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~---------------------~l~~~-~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L  222 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLD---------------------DMSSI-VQKAPNLKILNLSGNELKSE--RELDKIKGLKL  222 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCG---------------------GGTTH-HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCC
T ss_pred             hhCCCCCEEECCCCCCCCCc---------------------cchhH-HhhCCCCCEEECCCCccCCc--hhhhhcccCCc
Confidence            35666777777777665310                     12222 45677777777777777654  2233333  77


Q ss_pred             cEEECCCCcCCccCC-------ccccCCCCCcEEE
Q 039739          556 SHLILGHNNLEGEVP-------VQLCKLNQLQLLD  583 (628)
Q Consensus       556 ~~L~l~~~~i~~~~~-------~~l~~l~~L~~L~  583 (628)
                      ++|+|++|++.+..|       ..+..+|+|+.||
T Consensus       223 ~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          223 EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            778888887775444       2356677777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.78  E-value=5.2e-06  Score=72.76  Aligned_cols=125  Identities=15%  Similarity=0.186  Sum_probs=67.4

Q ss_pred             hhhhcccCCCCcEEecCCC-CCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcc---
Q 039739           23 ATQELHNFTNLEYLTLDSS-SLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTS---   98 (628)
Q Consensus        23 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---   98 (628)
                      +...+.+.+.|++|+|+++ .+.+.....++..                      +..-..|+.|+|++|  .+.+.   
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~a----------------------L~~N~~L~~L~L~~n--~igd~ga~   88 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEA----------------------ACNSKHIEKFSLANT--AISDSEAR   88 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHH----------------------HTTCSCCCEEECTTS--CCBHHHHT
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHH----------------------HhhCCCcCEEEccCC--CCChHHHH
Confidence            5556666788999999885 8877666666552                      222234444444444  22222   


Q ss_pred             -hhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCC---cccc----cCchhhhcCCCCCEEEcccc
Q 039739           99 -FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYN---DLRG----SLPWCLANMTSLRILDVSSN  170 (628)
Q Consensus        99 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~---~~~~----~~~~~l~~l~~L~~L~l~~~  170 (628)
                       +.+.+.. -+.|++|+|++|.++..++....+++..-+.|++|+|+++   .+..    .+...+..-+.|+.|+++.+
T Consensus        89 alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A           89 GLIELIET-SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             THHHHHHH-CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhc-CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence             2222223 4556666666665544444444445566666666666643   2222    12334455566777776655


Q ss_pred             cc
Q 039739          171 QL  172 (628)
Q Consensus       171 ~~  172 (628)
                      .+
T Consensus       168 ~~  169 (197)
T 1pgv_A          168 SM  169 (197)
T ss_dssp             CH
T ss_pred             Cc
Confidence            43

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.70  E-value=2.1e-05  Score=68.99  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             cCccceeecccc-hhhcC--cchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccccc----C
Q 039739           80 FKSLEHLDMEGA-LIALN--TSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGS----L  152 (628)
Q Consensus        80 l~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~  152 (628)
                      -+.|++|+|+++ .+...  ..+.+.+.. -..|++|+|++|.+++.++....+++...+.|++|+|++|.+.+.    +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            345555555542 22111  124455555 678889999888887666666667777888899999998888653    2


Q ss_pred             chhhhcCCCCCEEEcccc---cccc----ccCCCCCCCCCcccEEEcccCeee
Q 039739          153 PWCLANMTSLRILDVSSN---QLTG----SISSSPLVHLTSIEELYLSNNHFQ  198 (628)
Q Consensus       153 ~~~l~~l~~L~~L~l~~~---~~~~----~l~~~~l~~l~~L~~L~l~~~~~~  198 (628)
                      ...+..-+.|++|+++++   .+..    .+.. .+..-+.|+.|+++.+...
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence            334555677888988754   3321    1222 3455678888888776543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.06  E-value=0.011  Score=48.13  Aligned_cols=56  Identities=25%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             EEecCCCcCc-CCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          508 QVHLSKNMLH-GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       508 ~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      .++.+++.++ ..+|.. +  .++|+.|+|++|+++...+..|..+++|+.|+|.+|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666663 245543 2  246788888888887666667777888888888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.70  E-value=0.024  Score=46.13  Aligned_cols=56  Identities=25%  Similarity=0.356  Sum_probs=35.6

Q ss_pred             EEEccCCcCc-CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccC
Q 039739          485 ILDISDNNIS-GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN  542 (628)
Q Consensus       485 ~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  542 (628)
                      .++.+++.++ ..+|.. .+.+++.|+|++|.++ .++...|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            5666666665 233322 2556777777777774 566666777777777777777553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	628
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.3 bits (212), Expect = 5e-19
 Identities = 57/258 (22%), Positives = 93/258 (36%), Gaps = 4/258 (1%)

Query: 340 SLNISMNALDG--SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSL 397
           +L++S   L     IPSS  N+ +L  L +   +         +     L  L +++ ++
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 398 EGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLT 457
            G +      +  L  L    N   G +P S+S    L G+  + N +SG IP   G+ +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 458 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLH 517
           +L   M    +              L  +D+S N + G     F      Q         
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 518 GQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 577
                    +       DL  NR+ G +   +  L  L  L +  NNL GE+P Q   L 
Sbjct: 234 AFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291

Query: 578 QLQLLDLSNNSLHGSIPL 595
           +  +   +NN      PL
Sbjct: 292 RFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 4e-14
 Identities = 55/247 (22%), Positives = 83/247 (33%), Gaps = 3/247 (1%)

Query: 362 LQILDLSNNHLTGEIPEHLVVG-CVNLESLALSNN-SLEGHMFSRNFNLTNLRWLQLEGN 419
           +  LDLS  +L    P    +     L  L +    +L G +      LT L +L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 420 HFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479
           +  G IP  LS+   L  L  + N+LSG +P  + +L  L  I    N + G IP  +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 480 LDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
              L        N                     +    +      F S           
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVD-LSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN 599
                    V     L+ L L +N + G +P  L +L  L  L++S N+L G IP   + 
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 600 TTLHESY 606
                S 
Sbjct: 291 QRFDVSA 297

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 39/266 (14%), Positives = 76/266 (28%), Gaps = 12/266 (4%)

Query: 134 SLVHLQVLNIAYNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
               +  L+++  +L     +P  LAN+  L  L +             +  LT +  LY
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
           +++ +    I        + +   ++ N           SL          +  SG    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 252 FIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHK 311
                                         +      L    +            +    
Sbjct: 168 SYGSFSKLFTS--------MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH 371
                 I          +    +  +L  L++  N + G++P     +KFL  L++S N+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 372 LTGEIPEHLVVGCVNLESLALSNNSL 397
           L GEIP+         +  A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 43/252 (17%), Positives = 83/252 (32%), Gaps = 3/252 (1%)

Query: 264 LEYVDLSHIKMNGEFPTWL-LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNN 322
           +  +DLS + +   +P    L N   L  L +   +       P  +           + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 323 FRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVV 382
                  +    + +L +L+ S NAL G++P S  ++  L  +    N ++G IP+    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 383 GCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 442
                 S+ +S N L                      + +      L             
Sbjct: 172 FSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 502
            +        +G    L  + +  N + G +P    QL +L  L++S NN+ G +P   +
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 503 PLSVEQVHLSKN 514
               +    + N
Sbjct: 290 LQRFDVSAYANN 301

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (207), Expect = 1e-18
 Identities = 49/276 (17%), Positives = 82/276 (29%), Gaps = 8/276 (2%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
                   +  +PV I     +   + +  N +     +SF   + L IL L +N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435
                    +  +     N  L     +    L  L  L L+        P        L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 495
           + L+L +N+L         +L  L H+ +  N +       F  L  L  L +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 496 SLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL 555
             P  F  L               L         +L  L L+ N    +        + L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWL 250

Query: 556 SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591
                  + +   +P +   L    L  L+ N L G
Sbjct: 251 QKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 42/175 (24%), Positives = 60/175 (34%), Gaps = 3/175 (1%)

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
            +P  +      + +FL+ N +S            L  + +  N L       F  L  L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 484 QILDISDNNISGSL-PSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
           + LD+SDN    S+ P+ FH L              +L  G F    +L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCL 597
               D    L  L+HL L  N +          L+ L  L L  N +    P   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 45/288 (15%), Positives = 92/288 (31%), Gaps = 36/288 (12%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
            + + + +  N+++   ++S      ++  L+L +N      +          +   +DN
Sbjct: 32  AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 220 NEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 279
            ++                              + P   +    L  + L    +    P
Sbjct: 91  AQL----------------------------RSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 280 TWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339
                    L+ L L +++L             L  L +  N     +P      L SL 
Sbjct: 123 GL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD 180

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG 399
            L +  N +    P +F ++  L  L L  N+L+  +P   +     L+ L L++N    
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 447
              +R      L+  +   +     +PQ L+   +     L  N L G
Sbjct: 240 DCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 38/262 (14%), Positives = 74/262 (28%), Gaps = 35/262 (13%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQ------------------------L 172
             Q + +  N +            +L IL + SN                          
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 173 TGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSL 232
             S+  +    L  +  L+L     Q  +    F   + L+  Y  +N + A    +   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR- 150

Query: 233 TAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQL 292
                 L+ L L            F    H L+ + L   ++    P    +    +   
Sbjct: 151 --DLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSI 352
              N+    P +  +   + L  L +++N +          +   L     S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 353 PSSFGNMKFLQILDLSNNHLTG 374
           P          +  L+ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 1e-17
 Identities = 74/367 (20%), Positives = 131/367 (35%), Gaps = 33/367 (8%)

Query: 132 LCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELY 191
           L  +  LQ   +    + G     +  + +L  ++ S+NQLT      PL +LT + ++ 
Sbjct: 43  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDIL 94

Query: 192 LSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDG 251
           ++NN       L    N + L  F     +I+     ++         +   +S+  G  
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 252 FIFPKFLYHQH-------DLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQ 304
            +      +Q        +L  ++   I  N      +L   T L  L   N+ +     
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT- 213

Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
            P+     L  L ++ N  +    +     L +L  L+++ N +    P     +  L  
Sbjct: 214 -PLGILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTE 267

Query: 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE 424
           L L  N ++   P   +    N     L  N  +    S   NL NL +L L  N+    
Sbjct: 268 LKLGANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 425 IPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 484
            P  +S    L+ LF  NN +S      L NLT +  +    N +    P     L  + 
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376

Query: 485 ILDISDN 491
            L ++D 
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 2e-13
 Identities = 43/197 (21%), Positives = 62/197 (31%), Gaps = 14/197 (7%)

Query: 400 HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRL 459
              S    LTNL  L    N      P  +     L+ L LN N L       L +LT L
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNL 243

Query: 460 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQ 519
             + +  N +    P     L  L  L +  N IS   P                +    
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 520 LKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 579
                  N  +L  L L +N ++      V  L++L  L   +N +       L  L  +
Sbjct: 302 ----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 580 QLLDLSNNSLHGSIPLC 596
             L   +N +    PL 
Sbjct: 354 NWLSAGHNQISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 58/351 (16%), Positives = 123/351 (35%), Gaps = 32/351 (9%)

Query: 1   MGSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQ----SIASIFP 56
           +    +L  +  S+N  TDI      L N T L  + ++++ +          ++  +  
Sbjct: 62  VEYLNNLTQINFSNNQLTDI----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 57  SLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLF 116
               ++ I    N     +      ++  +     L +L           +  L  L+  
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 117 GSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 176
             +  +++       L  L +L+ L    N +    P     +T+L  L ++ NQL    
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDI- 234

Query: 177 SSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPN 236
               L  LT++ +L L+NN      +L P    ++L       N+I+           P 
Sbjct: 235 --GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNIS--------PL 281

Query: 237 FQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L+ L+      +       + +  +L Y+ L    ++   P   + + TKL++L   N
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFAN 338

Query: 297 DSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNA 347
           + +       + +   +  L   +N      P+     L  +  L ++  A
Sbjct: 339 NKVSDVS--SLANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 72/394 (18%), Positives = 124/394 (31%), Gaps = 59/394 (14%)

Query: 6   SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLH----ISLLQSIASIFPSLKNL 61
            + TL         I      +    NL  +   ++ L     +  L  +  I  +   +
Sbjct: 45  QVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 62  SMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILG 121
           + I    N             +  +D    L  LN   L     S  S          L 
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 122 TNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 181
             +     + L +L  L+ L+I+ N +       LA +T+L  L  ++NQ++      PL
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT---PL 215

Query: 182 VHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSR 241
             LT+++EL L+ N  +    +    + + L      NN+I+                  
Sbjct: 216 GILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAP-------------- 258

Query: 242 LSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 301
                           L     L  + L   +++   P   L   T L            
Sbjct: 259 ----------------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL----- 297

Query: 302 PFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKF 361
               PI + K L  L +  NN     PV     L  L  L  + N +  S  SS  N+  
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFANNKV--SDVSSLANLTN 352

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395
           +  L   +N ++   P   +     +  L L++ 
Sbjct: 353 INWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 57/319 (17%), Positives = 102/319 (31%), Gaps = 54/319 (16%)

Query: 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL 392
             L       +    +  ++  +  ++  +  L      +   I    V    NL  +  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINF 73

Query: 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIP-------------------------- 426
           SNN L     +   NLT L  + +  N      P                          
Sbjct: 74  SNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 427 -------------QSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPI 473
                          +S    L  L   +        + L NLT L+ + +  N      
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSD 189

Query: 474 PVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVT 533
                +L  L+ L  ++N IS   P      +++++ L+ N L      GT  +  +L  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLNGNQLKDI---GTLASLTNLTD 245

Query: 534 LDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSI 593
           LDL+ N+++        GL++L+ L LG N +    P+          L+ +       I
Sbjct: 246 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 594 PLCLDNTTLHESYNNSSSL 612
               + T L   +NN S +
Sbjct: 304 SNLKNLTYLTLYFNNISDI 322

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 3e-17
 Identities = 54/263 (20%), Positives = 90/263 (34%), Gaps = 12/263 (4%)

Query: 333 DVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL 392
           D+ P    L++  N +       F N+K L  L L NN ++   P       V LE L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW 452
           S N L+         L  LR  + E       +   L++  V+E L  N    SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 453 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512
              + +L +I +   ++     +       L  L +  N I+    +    L+       
Sbjct: 146 FQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 513 KNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEG----- 567
                  +  G+  N+  L  L L+ N+L        D    +  + L +NN+       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISAIGSND 261

Query: 568 -EVPVQLCKLNQLQLLDLSNNSL 589
              P    K      + L +N +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.6 bits (174), Expect = 3e-14
 Identities = 45/267 (16%), Positives = 86/267 (32%), Gaps = 33/267 (12%)

Query: 304 QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ 363
           ++P        +LD+ NN        +  + L +L +L +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRN------------------ 405
            L LS N L  E+PE +      L         +   +F+                    
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 406 -----FNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQ 460
                  +  L ++++   +    IPQ L     L  L L+ N ++      L  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNI-TTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 461 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHG-- 518
            + +  N +             L+ L +++N +            ++ V+L  N +    
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 519 ---QLKRGTFFNSYSLVTLDLSYNRLN 542
                  G      S   + L  N + 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 6e-12
 Identities = 48/255 (18%), Positives = 91/255 (35%), Gaps = 11/255 (4%)

Query: 362 LQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF 421
           L+++  S+  L  ++P+ L     +   L L NN +         NL NL  L L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD 481
               P + +    LE L+L+ N L     +    L  L+        +   +     Q+ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 482 WLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL 541
            +++      +      +      +  + ++       +         SL  L L  N++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKI 183

Query: 542 NGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN-- 599
               +  + GL+ L+ L L  N++       L     L+ L L+NN L        D+  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 600 -TTLHESYNNSSSLD 613
              ++   NN S++ 
Sbjct: 244 IQVVYLHNNNISAIG 258

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 41/292 (14%)

Query: 108 PSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDV 167
           P    L L  + +    + I D    +L +L  L +  N +    P   A +  L  L +
Sbjct: 31  PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 168 SSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEIT 227
           S NQL       P     +++EL +  N     +    F   +++       N +     
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK---- 137

Query: 228 QSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 287
                                    I          L Y+ ++   +    P  L  +  
Sbjct: 138 ----------------------SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS-- 172

Query: 288 KLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNA 347
            L +L L  + +       +     L  L +S N+             P L  L+++ N 
Sbjct: 173 -LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK 230

Query: 348 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG 399
           L   +P    + K++Q++ L NN+++            N +  + S  SL  
Sbjct: 231 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 42/267 (15%), Positives = 84/267 (31%), Gaps = 16/267 (5%)

Query: 5   PSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMI 64
           P    L L +N  T+I     +  N  NL  L L ++ +      + A     L+ L + 
Sbjct: 31  PDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS 87

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNS 124
             ++  L         +   H +    +     + L          + + +        S
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN---------QMIVVELGTNPLKS 138

Query: 125 SRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 184
           S I +     +  L  + IA  ++            SL  L +  N++T   ++S L  L
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAAS-LKGL 194

Query: 185 TSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSL 244
            ++ +L LS N      +          +    +N  +      +         L   ++
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 245 SSGYGDGFIFPKFLYHQHDLEYVDLSH 271
           S+   + F  P +   +     V L  
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 4/151 (2%)

Query: 471 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYS 530
           GP+    CQ    +++  SD  +   +P    P     + L  N +   +K G F N  +
Sbjct: 1   GPVCPFRCQCHL-RVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKITE-IKDGDFKNLKN 56

Query: 531 LVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH 590
           L TL L  N+++         L +L  L L  N L+         L +L++ +     + 
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

Query: 591 GSIPLCLDNTTLHESYNNSSSLDKQFEISFS 621
            S+   L+   + E   N          +F 
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 38/243 (15%), Positives = 78/243 (32%), Gaps = 14/243 (5%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFV 422
           Q LDL+  +L  ++   L+     + +     + ++  +   +F+   ++ + L  +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 59

Query: 423 GE-IPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHI--MMPKNHLEGPIPVEFCQ 479
              +   LS+C  L+ L L    LS  I   L   + L  +         E  +      
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 480 LDWLQILDISDNNISGSLPSCFHPLSVEQVH-------LSKNMLHGQLKRGTFFNSYSLV 532
              L  L++S                V +           KN+    L          + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 533 TLDLSYNRLNGNISDWVDGLSQLSHLILGH-NNLEGEVPVQLCKLNQLQLLDLSNNSLHG 591
                   L  +       L+ L HL L    ++  E  ++L ++  L+ L +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 592 SIP 594
           ++ 
Sbjct: 240 TLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 22/301 (7%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           LD++  N    +   +  +   + +     + +D  +   F   + +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435
               ++  C  L++L+L    L   + +     +NL  L L G     E           
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 495
               LN +       + +          + + +L G                        
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS------------- 168

Query: 496 SLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSY-NRLNGNISDWVDGLSQ 554
                    ++  + LS +++        FF    L  L LS    +       +  +  
Sbjct: 169 --TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 555 LSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNNSSSLDK 614
           L  L +     +G + +       L  L ++ +         + N    E +     L  
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTL 283

Query: 615 Q 615
           Q
Sbjct: 284 Q 284

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 12/256 (4%)

Query: 267 VDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGH 326
           +DL+   ++ +    LL       +                 S  R+  +D+SN+     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 327 IPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLVVGCV 385
               I      L +L++    L   I ++      L  L+LS     +    + L+  C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 386 NLESLALSNNSLEGHMFSRNFNLTNLRWLQ-------LEGNHFVGEIPQSLSKCFVLEGL 438
            L+ L LS          +         +         +                ++   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 439 FLNNNSLSGKIPRWLGNLTRLQHIMMPK-NHLEGPIPVEFCQLDWLQILDISDNNISGSL 497
             ++  L     +    L  LQH+ + +   +     +E  ++  L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 498 PSCFHPLSVEQVHLSK 513
                 L   Q++ S 
Sbjct: 242 QLLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 32/245 (13%), Positives = 76/245 (31%), Gaps = 9/245 (3%)

Query: 137 HLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNH 196
            +       + +   L    +    ++ +D+S++ +  S     L   + ++ L L    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 197 FQIPISLEPFFNHSRLKSF-YADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFP 255
              PI +     +S L     +  +  +    Q+   +        LS    + +  +  
Sbjct: 83  LSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 256 KFLYHQHDLEYVDLSHIKMN---GEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKR 312
              +    +  ++LS  + N    +  T +      +      +  L             
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHL 372
           L  L +S         +     +P+L +L +     DG++      +  LQI   + +H 
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI---NCSHF 258

Query: 373 TGEIP 377
           T    
Sbjct: 259 TTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 3/195 (1%)

Query: 2   GSFPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNL 61
            S   +  + LS++           L   + L+ L+L+   L   ++ ++A    +L  L
Sbjct: 43  FSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRL 100

Query: 62  SMIGCE-VNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSIL 120
           ++ GC   +             L+ L++              +     ++  L+L G   
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 121 GTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 180
               S +          + +       L+         +  L+ L +S        +   
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 181 LVHLTSIEELYLSNN 195
           L  + +++ L +   
Sbjct: 221 LGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 9/230 (3%)

Query: 106 SMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRIL 165
           S   ++++ L  S++  ++   L   L     LQ L++    L   +   LA  ++L  L
Sbjct: 44  SPFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Query: 166 DVSSNQL---TGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEI 222
           ++S           +            L    +  +  + +        +          
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 223 NAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWL 282
           N + +   +L      L  L LS          +  +  + L+++ LS            
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 283 LENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIG 332
           L     L+ L +      G  QL   +   L  L I+ ++F       IG
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFTTIARPTIG 267

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 4/182 (2%)

Query: 409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNH 468
            +   L L  N        +L     L  L L+   L+         L  L  + +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQ 88

Query: 469 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNS 528
           L+    +         + D+S N ++         L   Q    K      L  G    +
Sbjct: 89  LQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 529 YSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS 588
             L  L L+ N L    +  ++GL  L  L+L  N+L   +P      + L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 589 LH 590
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 8/202 (3%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
           ++    N    +P ++         L++S N L     ++      L  L+L    LT  
Sbjct: 15  VNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435
             +      + +      +++    +      L  L  L +  N        +L     L
Sbjct: 71  QVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 495
           + L+L  N L    P  L    +L+ + +  N+L          L+ L  L + +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 496 SLPSCFHPLSVEQVHLSKNMLH 517
                F    +    L  N   
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 43/179 (24%), Positives = 59/179 (32%), Gaps = 5/179 (2%)

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
            +P  L K      L L+ N L       L   TRL  + +  +  E         L  L
Sbjct: 24  ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543
             LD+S N +           ++  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 544 NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTL 602
                +    +L  L L +NNL       L  L  L  L L  NSL+        +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 16/205 (7%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSM 63
                 L+LS N     + AT  L  +T L  L LD + L          +  +L  L  
Sbjct: 30  PKDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRAELTKL------QVDGTLPVLGT 81

Query: 64  IGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTN 123
           +    N L              +         + + L  +               + G  
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDV------SFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 124 SSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 183
              +    L     L+ L++A N+L       L  + +L  L +  N L           
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFG 193

Query: 184 LTSIEELYLSNNHFQIPISLEPFFN 208
              +   +L  N +     +  F  
Sbjct: 194 SHLLPFAFLHGNPWLCNCEILYFRR 218

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 3e-08
 Identities = 51/452 (11%), Positives = 117/452 (25%), Gaps = 21/452 (4%)

Query: 161 SLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQ---IPISLEPFFNHSRLKSFYA 217
            ++ LD+   +L+ +  +  L  L   + + L +                 +  L     
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 218 DNNEINAEITQS--HSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMN 275
            +NE+           L  P+ ++ +LSL +    G            L  +   H+  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVL 335
                              + D      +L +              +     P      +
Sbjct: 123 LLGDAG------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 336 PSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNN 395
            +       +  L   +  S   ++ L++               +V    +L  LAL +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 396 SLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGN 455
            L     +           +L           +     +   L    +     +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 456 LTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNM 515
               + +          +   + +         S  +   +       L +      ++ 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 355

Query: 516 LHGQLKRGTFFNSYSLVTLDLSYNRLNGN----ISDWVDGLSQLSHLILGHNNLEGEVPV 571
              +L +G       L  L L+   ++ +    ++  +     L  L L +N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 572 QLCK-----LNQLQLLDLSNNSLHGSIPLCLD 598
           QL +        L+ L L +      +   L 
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 6e-06
 Identities = 51/440 (11%), Positives = 102/440 (23%), Gaps = 28/440 (6%)

Query: 132 LCSLVHLQVLNIAYNDLRG----SLPWCLANMTSLRILDVSSNQLTG----SISSSPLVH 183
           L  L   QV+ +    L       +   L    +L  L++ SN+L       +       
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82

Query: 184 LTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLS 243
              I++L L N                 L +    +   N        L        +  
Sbjct: 83  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-- 140

Query: 244 LSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF 303
                    +    L +             +    P +     +           L    
Sbjct: 141 -------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 193

Query: 304 QLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ 363
           +      + L +      +        I     SL  L +  N L     +         
Sbjct: 194 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 253

Query: 364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVG 423
              L    +          G +     A  +        +   +       +        
Sbjct: 254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 313

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
                +  C        + +S+  +    L        +             +      L
Sbjct: 314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS--VL 371

Query: 484 QILDISDNNISG----SLPSCFHPL-SVEQVHLSKNMLHGQ----LKRGTFFNSYSLVTL 534
           ++L ++D ++S     SL +      S+ ++ LS N L       L          L  L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 535 DLSYNRLNGNISDWVDGLSQ 554
            L     +  + D +  L +
Sbjct: 432 VLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 47/463 (10%), Positives = 104/463 (22%), Gaps = 30/463 (6%)

Query: 6   SLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIG 65
            + +L +     +D A   + L      + + LD   L  +  + I+S       L+ + 
Sbjct: 3   DIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 66  CEVNGLVRGQGFPHF--------KSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFG 117
              N L    G              ++ L ++   +      +                 
Sbjct: 62  LRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 118 SILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS 177
             L  ++   L          ++  +       S   C    + LR           +  
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 178 SSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNF 237
            +        + L  S    +              +          +    +        
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 238 QLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG---EFPTWLLENNTKLRQLSL 294
                                  +  +       +       E    L     +L     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 295 VNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPS 354
                             +     +         V   +       ++ +     G    
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 355 SFGNMKF---LQILDLSNNHLTGEIPEHL---VVGCVNLESLALSNNSLEGHMFSR---- 404
             G  +    L++L L++  ++      L   ++   +L  L LSNN L      +    
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 405 -NFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
                  L  L L   ++  E+         L+ L  +  SL 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 53/457 (11%), Positives = 115/457 (25%), Gaps = 28/457 (6%)

Query: 82  SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVL 141
            ++ LD++     L+ +    +   +   + + L    L     + +   L     L  L
Sbjct: 3   DIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 142 NIAYNDLRGSLPWCLA-----NMTSLRILDVSSNQLTGSISS----------SPLVHLTS 186
           N+  N+L      C+          ++ L + +  LTG+             +      S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 187 IEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQLSRLSLSS 246
              L  +         L+P     +L+  Y   +  + E   S     P+F+   +S + 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 247 GYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL--RQLSLVNDSLGGPFQ 304
               G             +   L                        L  +         
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 305 LPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQI 364
           + +       +   S           I           +        +  +   +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 365 LDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGE 424
             L    L        +       + A  ++       +R      +   +LE       
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 425 IPQSLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ- 479
                    VL  L+L +  +S      +   L     L+ + +  N L     ++  + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 480 ----LDWLQILDISDNNISGSLPSCFHPLSVEQVHLS 512
                  L+ L + D   S  +      L  ++  L 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 385 VNLESLALSNNSLEGHMFSRNF-NLTNLRWLQLEGNHF----VGEIPQSLSKCFVLEGLF 439
           ++++SL +    L    ++     L   + ++L+          +I  +L     L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 440 LNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 482
           L +N L       +    +     + K  L+            
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 7e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 528 SYSLVTLDLSYNRLNGN-ISDWVDGLSQLSHLILGHNNLEGEVPVQLCK----LNQLQLL 582
           S  + +LD+    L+    ++ +  L Q   + L    L       +         L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 583 DLSNNSLHGSIPLCL 597
           +L +N L      C+
Sbjct: 61  NLRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 51/417 (12%), Positives = 99/417 (23%), Gaps = 19/417 (4%)

Query: 2   GSFPSLNTLYLSSNNFTDIATAT--QELHNFTNLEYLTLDSSSLH----ISLLQSIASIF 55
                   + L     T+         L     L  L L S+ L       +LQ + +  
Sbjct: 24  PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 83

Query: 56  PSLKNLSMIGCEVNGLVRGQGFPHFKSLEHL---DMEGALIALNTSFLQIIGESMPSLKY 112
             ++ LS+  C + G   G      ++L  L    +   L+      L   G   P  + 
Sbjct: 84  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 143

Query: 113 LSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQL 172
             L       +++                 +  ++   +          L+        L
Sbjct: 144 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 203

Query: 173 TGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSL 232
                     +   +  +  S    +             +          ++ +      
Sbjct: 204 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 263

Query: 233 TAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQL 292
                      L           +     ++L       +      P   LE+       
Sbjct: 264 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 323

Query: 293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLP--SLFSLNISMNALDG 350
                       L  +       +  +     G   +  G   P   L  L ++   +  
Sbjct: 324 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 383

Query: 351 ----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVG----CVNLESLALSNNSLEG 399
               S+ ++      L+ LDLSNN L       LV         LE L L +     
Sbjct: 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 105 ESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLA-----NM 159
           +    L+ L L    +  +S   L   L +   L+ L+++ N L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQI 199
             L  L +     +  +          ++ L       ++
Sbjct: 426 CLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLRV 458

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 8e-08
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 3/163 (1%)

Query: 351 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTN 410
            IP           L L++N L     + L     +L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 411 LRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLE 470
           ++ LQL  N       +       L+ L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 471 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSK 513
               + +   +WL+   ++        PS    + ++ +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWL-GNLTRLQHIMMPKNHLEGPIPVEFCQLDW 482
           EIP+ +        L LN+N L       L G L  L  + + +N L G  P  F     
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 483 LQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN 542
           +Q L + +N I       F  L   +     +     +  G+F +  SL +L+L+ N  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 543 GNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL 589
            N          L    L         P    K+  +Q+ DL ++  
Sbjct: 140 CNCHLA-WFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 354 SSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRW 413
           + + N    + LDL    +   + E+L       +++  S+N +          L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 414 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG----KIPRWLGNLTRLQHIMMPKNHL 469
           L +  N               L  L L NNSL           L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 470 EGPIPVEFCQLDWLQILD 487
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 29/238 (12%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 157 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFY 216
             + +   +    + +T +++ +    L  I  L           ++E     + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 217 ADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 276
             +N+I       +           L+  +         K +     L+ +    +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 277 EFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLP 336
                 L   + L+ L L  + +     L   ++ +   +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSN 394
            L +L    N +    P    ++  L  + L NN ++   P   +    NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 14/196 (7%)

Query: 4   FPSLNTLYLSSNNFTDIATATQELHNFTNLEYLTLDSSSLHI-----SLLQSIASIFPSL 58
              + TL       T I    + +    NL  L L  + +       +L +         
Sbjct: 40  LDGITTLSAFGTGVTTI----EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 59  KNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGS 118
              ++        ++       +  +   + G               ++  L  L+    
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 119 ILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 178
           +   N+       L +L  L  L    N +    P  LA++ +L  + + +NQ++     
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-- 211

Query: 179 SPLVHLTSIEELYLSN 194
            PL + +++  + L+N
Sbjct: 212 -PLANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 29/211 (13%), Positives = 61/211 (28%), Gaps = 4/211 (1%)

Query: 160 TSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYADN 219
            +   L     +L   I          +E++ +S N     I  + F N  +L     + 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 220 NEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 279
                 I        PN Q   +S  +           ++    +      +I ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLIS--NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 280 TWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLF 339
              +  + +   L L  + +        +  +   +    NNN    +P ++        
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPV 204

Query: 340 SLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
            L+IS   +         N+K L+     N 
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 41/230 (17%), Positives = 66/230 (28%), Gaps = 8/230 (3%)

Query: 363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFV 422
           ++     + +T EIP  L     N   L      L            +L  +++  N  +
Sbjct: 11  RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 423 GEIPQSLSKCFVLEGLFLN---NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ 479
             I   +               NN L      +         ++        P   +   
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 480 LDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN 539
           L  + +    + NI     + F  LS E V L  N    Q      FN   L  L+LS N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 540 RLNGNISDWV-DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS 588
                + + V  G S    L +    +       L  L +L+     N  
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 37/251 (14%), Positives = 75/251 (29%), Gaps = 27/251 (10%)

Query: 316 LDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 375
                +     IP ++     +   L   +  L      +F     L+ +++S N +   
Sbjct: 13  FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 376 IPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL 435
           I   +      L  + +   +   ++    F         L  N  +  +P         
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-------- 120

Query: 436 EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 495
                        + +       L  I    N                 IL ++ N I  
Sbjct: 121 -------------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 167

Query: 496 SLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQL 555
                F+   +++++LS N    +L    F  +   V LD+S  R++   S  ++ L +L
Sbjct: 168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227

Query: 556 SHLILGHNNLE 566
                   NL+
Sbjct: 228 R--ARSTYNLK 236

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 52/312 (16%), Positives = 96/312 (30%), Gaps = 17/312 (5%)

Query: 134 SLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLS 193
              HL+ L  + N L   LP    ++ SL + + +   L+        + +++ +   L 
Sbjct: 56  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 114

Query: 194 NNHFQIPISLEPFFNHSRLKSFYADNNEINAEITQSHSLTAPNFQL---SRLSLSSGYGD 250
                  + +    N+S  K      +        +     P  Q         +     
Sbjct: 115 ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 174

Query: 251 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSH 310
             +    L  +  +   ++       +   +L         L  + D       L +  +
Sbjct: 175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 234

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
               + ++  +     +   I   L  L      +NA    I S       L+ L++SNN
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 294

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS 430
            L  E+P         LE L  S N L            NL+ L +E N    E P    
Sbjct: 295 KLI-ELPALP----PRLERLIASFNHLA----EVPELPQNLKQLHVEYNPLR-EFPDIPE 344

Query: 431 KCFVLEGLFLNN 442
               +E L +N+
Sbjct: 345 S---VEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 48/313 (15%), Positives = 88/313 (28%), Gaps = 48/313 (15%)

Query: 311 KRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNN 370
           ++   L+++N          + ++ P L SL  S N+L   +P    ++K L + + +  
Sbjct: 38  RQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 371 HLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLS 430
            L+   P    +G  N +   L        +   + +  +L+ L             +  
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 431 KCFVLEGLFLNNNSLSGKIPR--------------------------WLGNLTRLQHIMM 464
              + E   L   +                                  L NL  L  I  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGT 524
             N L+    +           +   +         F  +S         +         
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 525 FFNSY--------SLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL 576
             N          SL  L++S N     + +      +L  LI   N+L  EVP      
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHLA-EVPELP--- 323

Query: 577 NQLQLLDLSNNSL 589
             L+ L +  N L
Sbjct: 324 QNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 44/287 (15%), Positives = 81/287 (28%), Gaps = 17/287 (5%)

Query: 337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL------VVGCVNLESL 390
               L ++   L  S+P    +   L+ L  S N LT E+PE        +V   NL++L
Sbjct: 39  QAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 391 ALSNNSLEGHMFSRNFNLTNLRWLQL----EGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 446
           +     LE    S N                 +     + +       LE +   NN L 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSV 506
                         +           +P+    +     +      +             
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 507 EQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE 566
             +    ++           N  + +              +   GLS+L   +   N   
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 567 GEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDN-TTLHESYNNSSSL 612
            E+         L+ L++SNN L   +P        L  S+N+ + +
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEV 319

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 438 LFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 497
           L L +  L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 498 PSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRL---NGNISDWVDGLSQ 554
               +   ++++ L  N L          +   LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 555 LSHLI 559
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 484 QILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG 543
           ++L ++  +++  L      L V  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 544 NISDWVDGLSQLSHLILGHNNLEG-EVPVQLCKLNQLQLLDLSNNSLHG 591
                     Q   L+L +N L+       L    +L LL+L  NSL  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 18/119 (15%), Positives = 32/119 (26%)

Query: 351 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTN 410
                    + L  L + N      +    + G   L +L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 411 LRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL 469
           L  L L  N       +++    + E +   N        RWL          +P+  L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 409 TNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPR-WLGNLTRLQHIMMPKN 467
                L+   +  + +    L     L  L++ N      +    L  L  L+++ + K+
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 468 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLH 517
            L    P  F     L  L++S N +          LS++++ LS N LH
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 327 IPVEIGDVLP-----SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLV 381
           +P  I  +            N+   ++  ++  +   +  +  +  +N+ +        +
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG---I 64

Query: 382 VGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL------------------QLEGNHFVG 423
               N+  L L+ N L       N       +L                   L   H   
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 424 EIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 483
                L     LE L+L NN ++         LT+L  + +  N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 484 QILDISDNNISGSLPSCFHPLSVEQVHLS 512
           Q L +S N+IS  L +     +++ + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 22/195 (11%)

Query: 407 NLTNLRWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMP 465
                    L+       + Q+ L+    ++ +  NN+ +       +  L  +  + + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 466 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTF 525
            N L    P+   +      LD +      SL       S+   H   + ++G +     
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 526 FNSYSLVTLDLSYNRLNGNISDWVD--------------GLSQLSHLILGHNNLEGEVPV 571
            + Y           L+                      GL++L +L L  N++      
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR 194

Query: 572 QLCKLNQLQLLDLSN 586
            L  L  L +L+L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 27/212 (12%), Positives = 66/212 (31%), Gaps = 24/212 (11%)

Query: 158 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRLKSFYA 217
                   ++    +T +++ +    L SI+++  +N+  +   S++       +   + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFL 75

Query: 218 DNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 277
           + N++      ++        L    +        +              D++ +    +
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 278 FPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPS 337
             +  L NN                    I    RL  LD  +        +     L  
Sbjct: 136 LESLYLGNN----------------KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 338 LFSLNISMNALDGSIPSSFGNMKFLQILDLSN 369
           L +L +S N +  S   +   +K L +L+L +
Sbjct: 180 LQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	628
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.85
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.85
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.72

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.8e-23  Score=208.60  Aligned_cols=190  Identities=26%  Similarity=0.382  Sum_probs=117.0

Q ss_pred             hcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCcc
Q 039739          284 ENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ  363 (628)
Q Consensus       284 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  363 (628)
                      ..+++++.+.++++.+.+..  ....+++|+++++++|.+. .++ .+. .+++|+.+++.+|.+++..  .+..+++|+
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~--~~~~~~~L~  266 (384)
T d2omza2         194 AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLA--PLSGLTKLT  266 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             ccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCC-Ccc-hhh-cccccchhccccCccCCCC--cccccccCC
Confidence            45566666666666655432  2345566777777777665 333 222 3667777777777666432  256667777


Q ss_pred             EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCC
Q 039739          364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN  443 (628)
Q Consensus       364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  443 (628)
                      .++++++++. .++.  +..++.++.+.++.|.+.+  ...+..+++++.|++++|.+.+..  .+..+++|++|++++|
T Consensus       267 ~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         267 ELKLGANQIS-NISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             EEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSS
T ss_pred             EeeccCcccC-CCCc--ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCC
Confidence            7777777665 3333  3346667777777766654  233556677777777777666432  2566677777777777


Q ss_pred             cCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCC
Q 039739          444 SLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDN  491 (628)
Q Consensus       444 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  491 (628)
                      .+++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       340 ~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         340 KVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            6653 22 46667777777777777664433  666777777777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.4e-25  Score=218.10  Aligned_cols=256  Identities=30%  Similarity=0.428  Sum_probs=157.0

Q ss_pred             ccCEEEccCCcCCc--ccchhhhhhCCCccEEEccc-ccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCcccc
Q 039739          312 RLGMLDISNNNFRG--HIPVEIGDVLPSLFSLNISM-NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLE  388 (628)
Q Consensus       312 ~L~~L~l~~~~i~~--~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  388 (628)
                      +++.|+++++.+.+  .+|..+.. +++|+.|++++ |.+.+.+|..+.++++|++|++++|++. ..+...+..+++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhcccccc-ccccccccchhhhc
Confidence            46666666666554  34555554 66666666665 4555566666666666666666666655 33333334455666


Q ss_pred             EEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc-cEEEccCCcCCCccCccccCCCCcceEECCCC
Q 039739          389 SLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL-EGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKN  467 (628)
Q Consensus       389 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  467 (628)
                      .++++.|.+....+..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|.+.+..+..+..+..+ .+++.++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            66666665555555555555666666666665555555555554443 555555555554444444443332 3555555


Q ss_pred             cCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccch
Q 039739          468 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISD  547 (628)
Q Consensus       468 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  547 (628)
                      ...+..|..+..+++|+.++++++.+.                       +.++.  +..+++|+.|++++|++++.+|+
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~-----------------------~~~~~--~~~~~~L~~L~Ls~N~l~g~iP~  262 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLA-----------------------FDLGK--VGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEEC-----------------------CBGGG--CCCCTTCCEEECCSSCCEECCCG
T ss_pred             ccccccccccccccccccccccccccc-----------------------ccccc--cccccccccccCccCeecccCCh
Confidence            444444444445555555555444443                       33332  56678888888888888888888


Q ss_pred             hhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCc-cccc-cccc
Q 039739          548 WVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNS-LHGS-IPLC  596 (628)
Q Consensus       548 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~~-ip~~  596 (628)
                      .++++++|++|+|++|++++.+|+ +.++++|+.+++.+|+ +.|. +|.|
T Consensus       263 ~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             HHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCCC
Confidence            888888899999999988887875 5778888888888887 4444 5655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=8.2e-23  Score=205.09  Aligned_cols=343  Identities=24%  Similarity=0.268  Sum_probs=175.2

Q ss_pred             cCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEEEcccCeeeeecCCCCcCCCCcc
Q 039739          133 CSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELYLSNNHFQIPISLEPFFNHSRL  212 (628)
Q Consensus       133 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  212 (628)
                      ..+.+|++|+++++.+...  ..+..+++|++|++++|+++ .++.  ++++++|++|++++|.+...   ..+..+++|
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i---~~l~~l~~L  112 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADI---TPLANLTNL  112 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC---GGGTTCTTC
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccccc---ccccccccc
Confidence            4566788888888888742  45778888888888888887 5654  78888888888888877632   236667777


Q ss_pred             cEEeccCCcccccccccccCccCcccceeeeccCCCCCCcccccccccCCCccEEEccCCcccCcCchhHHhcCccCcEE
Q 039739          213 KSFYADNNEINAEITQSHSLTAPNFQLSRLSLSSGYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQL  292 (628)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  292 (628)
                      +.+++.++.+.+...                              ......+.......+.+.......   ....    
T Consensus       113 ~~L~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~l~~~~~~~---~~~~----  155 (384)
T d2omza2         113 TGLTLFNNQITDIDP------------------------------LKNLTNLNRLELSSNTISDISALS---GLTS----  155 (384)
T ss_dssp             CEEECCSSCCCCCGG------------------------------GTTCTTCSEEEEEEEEECCCGGGT---TCTT----
T ss_pred             ccccccccccccccc------------------------------cccccccccccccccccccccccc---cccc----
Confidence            777766654432111                              011112222222222221100000   0000    


Q ss_pred             EeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcc
Q 039739          293 SLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHL  372 (628)
Q Consensus       293 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  372 (628)
                                        .............     ..+.. .+.........+...  .......+++++.++++++.+
T Consensus       156 ------------------~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i  209 (384)
T d2omza2         156 ------------------LQQLSFGNQVTDL-----KPLAN-LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQI  209 (384)
T ss_dssp             ------------------CSEEEEEESCCCC-----GGGTT-CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC
T ss_pred             ------------------ccccccccccchh-----hhhcc-ccccccccccccccc--cccccccccccceeeccCCcc
Confidence                              0000000000000     00100 112222222222211  122234445555555555554


Q ss_pred             cCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCcc
Q 039739          373 TGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRW  452 (628)
Q Consensus       373 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  452 (628)
                      . .++.  ...+++|++|++++|.++.  ...+..+++|+.|++++|.+++..  .+..+++|++|+++++.+.+..  .
T Consensus       210 ~-~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~  280 (384)
T d2omza2         210 S-DITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--P  280 (384)
T ss_dssp             C-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--G
T ss_pred             C-CCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--c
Confidence            4 2221  1224455555555555443  123344555555555555544321  2344455555555554443221  2


Q ss_pred             ccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCcc
Q 039739          453 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLV  532 (628)
Q Consensus       453 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  532 (628)
                      +..++.++.+.+.+|.+.+.  ..+..+++++.|++++|                       ++.+ +++  +..+++|+
T Consensus       281 ~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n-----------------------~l~~-l~~--l~~l~~L~  332 (384)
T d2omza2         281 LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN-----------------------NISD-ISP--VSSLTKLQ  332 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSS-----------------------CCSC-CGG--GGGCTTCC
T ss_pred             cccccccccccccccccccc--cccchhcccCeEECCCC-----------------------CCCC-Ccc--cccCCCCC
Confidence            34444445555554444321  22444444444444444                       4432 221  56678888


Q ss_pred             EEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCC
Q 039739          533 TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN  587 (628)
Q Consensus       533 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~  587 (628)
                      .|++++|++++ ++ .++.+++|++|++++|++++. +. +.++++|+.|+|++|
T Consensus       333 ~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l-~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         333 RLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL-TP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC-GG-GTTCTTCSEEECCCE
T ss_pred             EEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC-hh-hccCCCCCEeeCCCC
Confidence            88888888874 33 578888888888888888843 32 788888888888876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=2.3e-24  Score=209.50  Aligned_cols=250  Identities=26%  Similarity=0.374  Sum_probs=209.3

Q ss_pred             ccCcEEEeecCCCCC--CCCcccccCCccCEEEccC-CcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCcc
Q 039739          287 TKLRQLSLVNDSLGG--PFQLPIHSHKRLGMLDISN-NNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQ  363 (628)
Q Consensus       287 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  363 (628)
                      .+++.|+++++.+.+  ..+..+..++.|++|++++ |.+.+.+|..+.. +++|+.|++++|.+.+..+..+..++.|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhc
Confidence            368899999998877  3667899999999999987 7888899999877 89999999999999988888899999999


Q ss_pred             EEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCC-cEEEccCccCcCcccccccCCCcccEEEccC
Q 039739          364 ILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNL-RWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN  442 (628)
Q Consensus       364 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  442 (628)
                      .+++++|.+...+|..+ ..++.++.+++++|.+.+..+..+..+..+ +.+.+++|.+++..+..+..+..+ .+++..
T Consensus       129 ~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCS
T ss_pred             ccccccccccccCchhh-ccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            99999999886666554 469999999999999988777777777775 889999999998888777776544 799999


Q ss_pred             CcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCc
Q 039739          443 NSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKR  522 (628)
Q Consensus       443 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  522 (628)
                      +...+..+..+..+++++.+++.++.+.+.. ..+..+++|+.|++++|++++                       .+|.
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g-----------------------~iP~  262 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYG-----------------------TLPQ  262 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEE-----------------------CCCG
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccCccCeecc-----------------------cCCh
Confidence            9988888999999999999999999998554 468888899999998888874                       4555


Q ss_pred             cccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcC
Q 039739          523 GTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNL  565 (628)
Q Consensus       523 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  565 (628)
                      . +.++++|+.|+|++|++++.+|+ ++++++|+.+++++|+.
T Consensus       263 ~-l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         263 G-LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             G-GGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             H-HhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            4 66777888888888888777764 46777788888888864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=3.6e-21  Score=185.97  Aligned_cols=265  Identities=20%  Similarity=0.224  Sum_probs=169.1

Q ss_pred             cCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEc
Q 039739          313 LGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLAL  392 (628)
Q Consensus       313 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  392 (628)
                      .+.++-++..++ .+|..+   .++++.|++++|.++...+..|..+++|++|+++++.+. .++...+.++++|+.|++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            444555554554 555544   246666666666666433345666666777777666665 454444555666677777


Q ss_pred             cCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC--CccCccccCCCCcceEECCCCcCC
Q 039739          393 SNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS--GKIPRWLGNLTRLQHIMMPKNHLE  470 (628)
Q Consensus       393 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~  470 (628)
                      ++|+++.....   ..+.++.|...++.+....+..+.....+..+....+...  ...+..+.++++|+.+++++|.+.
T Consensus        87 ~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            66666543221   2345666666666666444445555566666666655332  223445666677777777777665


Q ss_pred             CCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhh
Q 039739          471 GPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWV  549 (628)
Q Consensus       471 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  549 (628)
                      . .+..  .+++|+.|++++|......+..+. ...++.|++++|.+. .++...+.++++|+.|++++|+++ .+|.++
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l  238 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL  238 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccc-ccccccccccccceeeeccccccc-cccccc
Confidence            3 2322  356777777777766655554443 566777777777775 444455888899999999999988 467788


Q ss_pred             cCCCCCcEEECCCCcCCccCCcc------ccCCCCCcEEECCCCccc
Q 039739          550 DGLSQLSHLILGHNNLEGEVPVQ------LCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       550 ~~l~~L~~L~l~~~~i~~~~~~~------l~~l~~L~~L~l~~~~~~  590 (628)
                      ..+++|+.|++++|+|+......      +....+|+.|++.+|++.
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            89999999999999988433333      345678999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=9.2e-21  Score=183.09  Aligned_cols=262  Identities=20%  Similarity=0.193  Sum_probs=153.4

Q ss_pred             ccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEE
Q 039739          312 RLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLA  391 (628)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (628)
                      .+++|++++|.++ .++...+..+++|+.|++++|.+....|..|..+++|+.|++++|++. .++...   .+.++.|.
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L~  106 (305)
T d1xkua_          32 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELR  106 (305)
T ss_dssp             TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEE
T ss_pred             CCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhhh
Confidence            4555555555554 444322222555555555555555444555555566666666666554 444322   34555555


Q ss_pred             ccCCccCCcccccccCCCCCcEEEccCccCc--CcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcC
Q 039739          392 LSNNSLEGHMFSRNFNLTNLRWLQLEGNHFV--GEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHL  469 (628)
Q Consensus       392 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  469 (628)
                      +..+.+.......+.....++.+....+...  ...+..+..+++|+++++++|.+.. .+..  .+++|++|++++|..
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKI  183 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCC
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcC
Confidence            5555555444444444555555555554332  1223445556666666666665542 2222  245666666666666


Q ss_pred             CCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchh
Q 039739          470 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDW  548 (628)
Q Consensus       470 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  548 (628)
                      ....+..+..++.++.|++++|.+.+..+..+. .++|+.|++++|++. .++.+ +..+++|+.|++++|+++......
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~-l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc-cccccCCCEEECCCCccCccChhh
Confidence            655556666666666777666666655454443 566777777777664 55554 788899999999999888554333


Q ss_pred             h------cCCCCCcEEECCCCcCC--ccCCccccCCCCCcEEE
Q 039739          549 V------DGLSQLSHLILGHNNLE--GEVPVQLCKLNQLQLLD  583 (628)
Q Consensus       549 ~------~~l~~L~~L~l~~~~i~--~~~~~~l~~l~~L~~L~  583 (628)
                      |      ...++|+.|++++|++.  ...|..|..+.....++
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             ccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence            3      45688999999999886  24466666666655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.9e-21  Score=180.91  Aligned_cols=206  Identities=26%  Similarity=0.226  Sum_probs=110.7

Q ss_pred             CCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEcc-CccCcCcccccccCCCcccEE
Q 039739          360 KFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLE-GNHFVGEIPQSLSKCFVLEGL  438 (628)
Q Consensus       360 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L  438 (628)
                      +++++|++++|+++ .++...+.++++|++|+++++.+.......+..++.++.+.+. .+.+....+..+..+++|++|
T Consensus        32 ~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            34556666665554 5554444455555555555555554444444445555555443 223333334444555555555


Q ss_pred             EccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcC
Q 039739          439 FLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHG  518 (628)
Q Consensus       439 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  518 (628)
                      ++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++.                        
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~------------------------  166 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS------------------------  166 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc------------------------
Confidence            55555544333444444555555555555554444444444555555555555444                        


Q ss_pred             CCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCccc
Q 039739          519 QLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       519 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  590 (628)
                      .+++.++.++++|+.+++++|++++..|..|..+++|+.|++++|++.+..++.|.++++|++|++++|++.
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            333344556666666666666666555666666666666666666666555556666666666666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.2e-21  Score=182.55  Aligned_cols=258  Identities=22%  Similarity=0.201  Sum_probs=196.5

Q ss_pred             CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739          314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS  393 (628)
Q Consensus       314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  393 (628)
                      ..+..++..++ .+|..+   .+.++.|+|++|.++...+..|..+++|+.|+++++.+. .++...+.+++.++.+...
T Consensus        14 ~~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence            34666776776 777755   357999999999999666667999999999999999987 7777777778899998775


Q ss_pred             C-CccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC
Q 039739          394 N-NSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP  472 (628)
Q Consensus       394 ~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  472 (628)
                      . +.+.......+.++++|++|++++|.+....+..+..+.+|+.+++++|.++...+..|..+++|++|++++|.+...
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence            4 456666677788999999999999998866777888899999999999999877778899999999999999999987


Q ss_pred             CcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCC
Q 039739          473 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGL  552 (628)
Q Consensus       473 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  552 (628)
                      .+..|..+++|+++++++|++++..+..                        |..+++|+.|++++|++.+..+..|+.+
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~------------------------f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHA------------------------FRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTT------------------------TTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             chhhhccccccchhhhhhccccccChhH------------------------hhhhhhcccccccccccccccccccccc
Confidence            7888999999999999999887433332                        5666777777777777776666677777


Q ss_pred             CCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739          553 SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       553 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~  601 (628)
                      ++|++|++++|++...-+ .-.-...++++....+.+.-+.|..+...+
T Consensus       225 ~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~  272 (284)
T d1ozna_         225 RALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRD  272 (284)
T ss_dssp             TTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTTCB
T ss_pred             cccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcCCc
Confidence            777777777777663211 100011234445555555555555554433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4e-20  Score=174.18  Aligned_cols=197  Identities=24%  Similarity=0.231  Sum_probs=102.6

Q ss_pred             CccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEc
Q 039739          361 FLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFL  440 (628)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  440 (628)
                      .+.+++.+++.++ .+|..+   .+++++|++++|.++......+.++++|++|++++|.++. ++ .+..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            3444455554444 444322   2345555555555544444444455555555555555442 22 2334555555555


Q ss_pred             cCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCC
Q 039739          441 NNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQL  520 (628)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  520 (628)
                      ++|.+. ..+..+.++++|+.|+++++.+....+..+..+.+++.|++++|.+..                        +
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~------------------------l  139 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------------------------L  139 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC------------------------C
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccce------------------------e
Confidence            555554 223345555555555555555554444445555555555555555442                        3


Q ss_pred             CccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCCCcc
Q 039739          521 KRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNSL  589 (628)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  589 (628)
                      +...+..+++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|+.
T Consensus       140 ~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            3333444555666666666665555555566666666666666665 5555555666666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.5e-19  Score=167.62  Aligned_cols=198  Identities=24%  Similarity=0.181  Sum_probs=125.0

Q ss_pred             CccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEc
Q 039739          337 SLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQL  416 (628)
Q Consensus       337 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  416 (628)
                      .+.+++.+++.++ .+|..+.  +++++|++++|++. .++...+.++++|++|++++|.++..  ..++.+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc--cccccccccccccc
Confidence            3444455555555 3443332  35666666666665 55555555566666666666666532  23345677777777


Q ss_pred             cCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCC
Q 039739          417 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS  496 (628)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  496 (628)
                      ++|++. ..+..+..+++|++|+++++.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|+++..
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            777766 3455667777788888887777766666777788888888888888766666677788888888888877643


Q ss_pred             CCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCC
Q 039739          497 LPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       497 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  566 (628)
                      .+..                        +..+++|+.|+|++|+++ .+|+.+.++++|+.|+|++|++.
T Consensus       164 ~~~~------------------------~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGL------------------------LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTT------------------------TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             Cccc------------------------cccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            3322                        444555666666666655 44555555566666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-20  Score=191.07  Aligned_cols=127  Identities=19%  Similarity=0.067  Sum_probs=65.5

Q ss_pred             CCccEEECcCCcccCccchh---hhcCCccccEEEccCCccCCcccccc----c-CCCCCcEEEccCccCcCc----ccc
Q 039739          360 KFLQILDLSNNHLTGEIPEH---LVVGCVNLESLALSNNSLEGHMFSRN----F-NLTNLRWLQLEGNHFVGE----IPQ  427 (628)
Q Consensus       360 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~----~-~~~~L~~L~l~~~~~~~~----~~~  427 (628)
                      ..|+.++++++.+.......   +....++|++|++++|.+.+.....+    . ..+.|++|++++|.+++.    +..
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            45666666666554222111   12234566666666666544322221    1 244567777777766532    233


Q ss_pred             cccCCCcccEEEccCCcCCCccCcc----cc-CCCCcceEECCCCcCCCCCccc----ccCCCCCCEE
Q 039739          428 SLSKCFVLEGLFLNNNSLSGKIPRW----LG-NLTRLQHIMMPKNHLEGPIPVE----FCQLDWLQIL  486 (628)
Q Consensus       428 ~~~~~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L  486 (628)
                      .+..+++|++|++++|.+.+.....    +. +...|+.|++.++.+.......    ....|+|++|
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            4555667777777777665432222    22 2346777777777665333322    2244555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.4e-20  Score=190.54  Aligned_cols=114  Identities=22%  Similarity=0.217  Sum_probs=56.0

Q ss_pred             ccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCc----hhhh
Q 039739           82 SLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLP----WCLA  157 (628)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~l~  157 (628)
                      +|++|+++++  .+.+.....+...++++++|+|++|.+++.+.+...+++..+++|++|+|++|.+.+...    ..+.
T Consensus         3 ~l~~ld~~~~--~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESC--CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCC--cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            4556666655  333332222222266666666666655432222222345566666666666666543211    1111


Q ss_pred             -cCCCCCEEEccccccccc----cCCCCCCCCCcccEEEcccCeee
Q 039739          158 -NMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELYLSNNHFQ  198 (628)
Q Consensus       158 -~l~~L~~L~l~~~~~~~~----l~~~~l~~l~~L~~L~l~~~~~~  198 (628)
                       ...+|++|++++|.+++.    ++. .+..+++|++|++++|.+.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCH
T ss_pred             cCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccch
Confidence             123566666666665421    122 3455666666666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=2.5e-15  Score=147.80  Aligned_cols=293  Identities=27%  Similarity=0.340  Sum_probs=172.0

Q ss_pred             CCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEE
Q 039739          262 HDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSL  341 (628)
Q Consensus       262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  341 (628)
                      .+++.|+++++.++ .+|+.    .++|++|+++++.++.. +.   ...+|++|+++++.++ .++.    ..+.|+.|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~l~~n~l~-~l~~----lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL----PPHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLK-ALSD----LPPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-CCCS----CCTTCCEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCccc-cc---chhhhhhhhhhhcccc-hhhh----hccccccc
Confidence            35677777777665 45532    35677777777776632 22   2356777777777665 4442    13467778


Q ss_pred             EcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccC
Q 039739          342 NISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHF  421 (628)
Q Consensus       342 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  421 (628)
                      ++++|.+. .+|. +..+++|+.|+++++.+. ..+.    ....+..+.+..+....  ...+..++.++.+.++++..
T Consensus       104 ~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         104 GVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             ECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCC
T ss_pred             cccccccc-cccc-hhhhccceeecccccccc-cccc----ccccccchhhccccccc--cccccccccceecccccccc
Confidence            88777776 3443 466777788887777665 3322    14556666665554332  33445567777777777655


Q ss_pred             cCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCC
Q 039739          422 VGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  501 (628)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  501 (628)
                      ... +.   .....+.+...++.+. ..+ .+..++.|+.+++++|.... .+   ....++..+.+.++.+........
T Consensus       175 ~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~~~~~~  244 (353)
T d1jl5a_         175 KKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDLPELPQ  244 (353)
T ss_dssp             SSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCCCCCCT
T ss_pred             ccc-cc---cccccccccccccccc-ccc-cccccccccccccccccccc-cc---cccccccccccccccccccccccc
Confidence            421 11   1122344444444332 222 34556667777776665442 11   223445555665555442211100


Q ss_pred             C-----------------CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCc
Q 039739          502 H-----------------PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNN  564 (628)
Q Consensus       502 ~-----------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  564 (628)
                      .                 .......++..+.+. .+    ...+++|+.|++++|+++ .+|.   .+++|+.|++++|+
T Consensus       245 ~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~  315 (353)
T d1jl5a_         245 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNH  315 (353)
T ss_dssp             TCCEEECCSSCCSEESCCCTTCCEEECCSSCCS-EE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccchhcccccccCccc-cc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCc
Confidence            0                 112223333333332 11    233679999999999998 4554   36789999999999


Q ss_pred             CCccCCccccCCCCCcEEECCCCcccccccccccccc
Q 039739          565 LEGEVPVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTT  601 (628)
Q Consensus       565 i~~~~~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~  601 (628)
                      ++ .+|+.   +++|++|++++|++. .+|+.+.+++
T Consensus       316 L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~  347 (353)
T d1jl5a_         316 LA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVE  347 (353)
T ss_dssp             CS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCC
T ss_pred             CC-ccccc---cCCCCEEECcCCcCC-CCCccccccC
Confidence            98 67764   468999999999987 7887776654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.3e-16  Score=145.99  Aligned_cols=187  Identities=18%  Similarity=0.228  Sum_probs=107.5

Q ss_pred             CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEE
Q 039739          384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIM  463 (628)
Q Consensus       384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  463 (628)
                      +.+|++|++.+|.++..  ..+..+++|+.|++++|.+.+..  .+..++.++++++++|.++. + ..+.++++|+.+.
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccc
Confidence            34455555555544431  23444555555555555544322  14455555555555554431 1 2344555555555


Q ss_pred             CCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739          464 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG  543 (628)
Q Consensus       464 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  543 (628)
                      ++++.....  ..+...+.++.+.++++.+... ......++++.|++++|.+.. .+  .+.++++|+.|++++|++++
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh-hhhcccccccccccccccccc-ch--hhcccccceecccCCCccCC
Confidence            555554422  2244555566666655555422 222334556666666665532 21  16778889999999998875


Q ss_pred             ccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739          544 NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN  586 (628)
Q Consensus       544 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  586 (628)
                      ..  .++.+++|++|++++|+++ .++ .+.++++|++|++++
T Consensus       188 l~--~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS--PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG--GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEE
T ss_pred             Ch--hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEeeC
Confidence            32  3788889999999999888 444 378889999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=147.51  Aligned_cols=199  Identities=18%  Similarity=0.132  Sum_probs=101.2

Q ss_pred             cccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcc-cccccCCCcccEEEccC-CcCCCccCccccCCCCcceEE
Q 039739          386 NLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEI-PQSLSKCFVLEGLFLNN-NSLSGKIPRWLGNLTRLQHIM  463 (628)
Q Consensus       386 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  463 (628)
                      ++++|++++|.++......|.++++|++|++++|.+...+ +.+|..++.++++.+.. +.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4444455444444333333444455555555555443322 23344455555554433 233333444455555555555


Q ss_pred             CCCCcCCCCCccc-ccCCCCCCEEEccCCcCcCCCCCCCC--CCcccEEecCCCcCcCCCCccccccCCCccEE-ECCCc
Q 039739          464 MPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFH--PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTL-DLSYN  539 (628)
Q Consensus       464 l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L-~l~~~  539 (628)
                      ++++.+....+.. +..++.+..+...++.+....+..+.  ...++.+++.+|+++ .++..++. .++++.+ .+++|
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~-~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFN-GTQLDELNLSDNN  187 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTT-TCCEEEEECTTCT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccccccc-chhhhcccccccc
Confidence            5555554322211 22334444444444444433333332  335556666666664 44444333 3444444 45667


Q ss_pred             ccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739          540 RLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN  586 (628)
Q Consensus       540 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  586 (628)
                      +++...+..|.++++|+.|++++|+++...+..|.++++|+.+++.+
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            77755555677788888888888888744344566666666655543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.7e-15  Score=138.54  Aligned_cols=186  Identities=22%  Similarity=0.278  Sum_probs=117.3

Q ss_pred             CCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEE
Q 039739          335 LPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWL  414 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  414 (628)
                      +.+|+.|++.+|.++. + .++..+++|++|++++|.+. .+..  +..+++++.+.+++|.++.  ...++.+++|+.+
T Consensus        40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~l  112 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTL  112 (227)
T ss_dssp             HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEE
T ss_pred             cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccc--ccccccccccccccccccc--ccccccccccccc
Confidence            4567777777777663 3 34666777777777777665 3332  4456777777777766654  2345567777777


Q ss_pred             EccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          415 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       415 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      .++++...+.  ..+...+.++.+.++++.+...  ..+.++++|++|++++|.+....  .+.++++|+.|++++|+++
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccC
Confidence            7776665432  2345566667777766665422  23555666777777776665322  2566666666666666554


Q ss_pred             CCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECC
Q 039739          495 GSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILG  561 (628)
Q Consensus       495 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  561 (628)
                      +                        ++.  +..+++|++|++++|++++..+  ++++++|+.|+++
T Consensus       187 ~------------------------l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 D------------------------ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             C------------------------CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             C------------------------Chh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            2                        222  5667888888888888875433  7788888888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.6e-17  Score=152.62  Aligned_cols=263  Identities=17%  Similarity=0.158  Sum_probs=167.7

Q ss_pred             EEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEccC
Q 039739          315 MLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSN  394 (628)
Q Consensus       315 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  394 (628)
                      +++++++.+..........  .....+.+......... .......+|++|+++++.+++.....++.++++|++|++++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5777776554332223322  23555666555444222 22334568999999988877555556677889999999999


Q ss_pred             CccCCcccccccCCCCCcEEEccCcc-CcCc-ccccccCCCcccEEEccCCcC-CCc-cCccc-cCCCCcceEECCCCc-
Q 039739          395 NSLEGHMFSRNFNLTNLRWLQLEGNH-FVGE-IPQSLSKCFVLEGLFLNNNSL-SGK-IPRWL-GNLTRLQHIMMPKNH-  468 (628)
Q Consensus       395 ~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~-~~~-~~~~~-~~~~~L~~L~l~~~~-  468 (628)
                      |.+++.....++.+++|+.|++++|. +++. +......+++|++|++++|.. ++. ....+ ..++.|++|+++++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            98877777777788899999998874 3322 223345688888998888743 321 11222 335778888888763 


Q ss_pred             -CCCCCc-ccccCCCCCCEEEccCCc-CcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCc-ccCCc
Q 039739          469 -LEGPIP-VEFCQLDWLQILDISDNN-ISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYN-RLNGN  544 (628)
Q Consensus       469 -~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~  544 (628)
                       +++... .....+++|++|++++|. +++                       ..... +..+++|++|++++| .+++.
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-----------------------~~~~~-l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----------------------DCFQE-FFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----------------------GGGGG-GGGCTTCCEEECTTCTTCCGG
T ss_pred             ccccccccccccccccccccccccccCCCc-----------------------hhhhh-hcccCcCCEEECCCCCCCChH
Confidence             222111 123467788888887764 331                       12222 566788999999986 47666


Q ss_pred             cchhhcCCCCCcEEECCCCcCCccC-CccccCCCCCcEEECCCCccccccccccccccccccccC
Q 039739          545 ISDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNSLHGSIPLCLDNTTLHESYNN  608 (628)
Q Consensus       545 ~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~ip~~~~~~~~~~~~~~  608 (628)
                      ....++++++|+.|++++| ++... +.....+|+|+   +..++++...|+.+.+-.....|+.
T Consensus       217 ~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~~~~~iw~~  277 (284)
T d2astb2         217 TLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGI  277 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSSTTCCCBTTB
T ss_pred             HHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCccccchhccc
Confidence            6667888899999999988 44222 32234466654   5777788777777777666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.4e-15  Score=136.82  Aligned_cols=165  Identities=23%  Similarity=0.346  Sum_probs=102.7

Q ss_pred             CccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEE
Q 039739          384 CVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIM  463 (628)
Q Consensus       384 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  463 (628)
                      +.+|++|++++|.+...  ..+..+++|++|++++|++++..  .+..+++|++|++++|.+++ ++ .+.++++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            45666666666665542  23455666666666666665322  24555666666666665542 22 355555555555


Q ss_pred             CCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCC
Q 039739          464 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNG  543 (628)
Q Consensus       464 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  543 (628)
                      +++|.+...  ..+..+++++.+++++|.++                       + .+  .+..+++|+.+++++|++++
T Consensus       119 l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~-----------------------~-~~--~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         119 LEHNGISDI--NGLVHLPQLESLYLGNNKIT-----------------------D-IT--VLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCC-----------------------C-CG--GGGGCTTCSEEECCSSCCCC
T ss_pred             ccccccccc--cccccccccccccccccccc-----------------------c-cc--cccccccccccccccccccc
Confidence            555554421  23445555555555555443                       2 11  15567889999999998875


Q ss_pred             ccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739          544 NISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN  586 (628)
Q Consensus       544 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  586 (628)
                      ..  .+..+++|++|++++|+++ .++ .+.++++|++|+|++
T Consensus       171 i~--~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IV--PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cc--cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            43  3788899999999999988 454 588999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.4e-15  Score=134.01  Aligned_cols=141  Identities=24%  Similarity=0.306  Sum_probs=67.0

Q ss_pred             cCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEE
Q 039739          430 SKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQV  509 (628)
Q Consensus       430 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  509 (628)
                      ..+++|++|++++|.+++..  .+.++++|++|++++|.+....  .+..+++|+.|++++|.... .+....++.|+.+
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L  133 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDPLKNLTNLNRL  133 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEE
T ss_pred             ccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--cccccccccccccccccccc-ccccchhhhhHHh
Confidence            33444444444444443221  1444444444444444443211  24444444444444444332 1111123333333


Q ss_pred             ecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEE
Q 039739          510 HLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLL  582 (628)
Q Consensus       510 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  582 (628)
                      ++++|++. .++  .+..+++|+.|++++|++++..  .++++++|+.|++++|+++ .++ .++.+++|++|
T Consensus       134 ~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             hhhhhhhc-ccc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence            33333332 222  1555667777777777666432  3666777777777777766 332 46666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-15  Score=141.79  Aligned_cols=219  Identities=17%  Similarity=0.185  Sum_probs=117.0

Q ss_pred             CEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEECcCCcccCccchhhhcCCccccEEEcc
Q 039739          314 GMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALS  393 (628)
Q Consensus       314 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  393 (628)
                      +.++.++..++ .+|..+   +++++.|++++|.++...+..|.++++|++|++++|.+...++...+.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            34555555554 455433   23555666666555533333455555566665555555433444444445555555443


Q ss_pred             C-CccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEECCCCcCCCC
Q 039739          394 N-NSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGP  472 (628)
Q Consensus       394 ~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  472 (628)
                      . +.+.......+.++++|++++++++.+....+  +                     ..+..++.++.+...++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~---------------------~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--V---------------------HKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--C---------------------TTTCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhccccc--c---------------------cccccccccccccccccccccc
Confidence            3 23333333334444555555554444432111  1                     1122233444444444444433


Q ss_pred             CcccccCCC-CCCEEEccCCcCcCCCCCCCCCCcccEEe-cCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhc
Q 039739          473 IPVEFCQLD-WLQILDISDNNISGSLPSCFHPLSVEQVH-LSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVD  550 (628)
Q Consensus       473 ~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  550 (628)
                      .+..+..++ .++.|++++|+++......+....++.+. +.+|.+. .++..+|.++++|+.|++++|+++...+..|.
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            334444443 66677777777765555555555655553 4556663 67777788899999999999999866555666


Q ss_pred             CCCCCcEEEC
Q 039739          551 GLSQLSHLIL  560 (628)
Q Consensus       551 ~l~~L~~L~l  560 (628)
                      ++++|+.+++
T Consensus       223 ~l~~L~~l~~  232 (242)
T d1xwdc1         223 NLKKLRARST  232 (242)
T ss_dssp             TCCEEESSSE
T ss_pred             CCcccccCcC
Confidence            6666655444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=7.6e-14  Score=136.99  Aligned_cols=283  Identities=27%  Similarity=0.308  Sum_probs=197.1

Q ss_pred             ccCcEEEeecCCCCCCCCcccccCCccCEEEccCCcCCcccchhhhhhCCCccEEEcccccCCCcccccccCCCCccEEE
Q 039739          287 TKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNNNFRGHIPVEIGDVLPSLFSLNISMNALDGSIPSSFGNMKFLQILD  366 (628)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  366 (628)
                      .++++|+++++.++. .+.   ..++|++|++++|.++ .+|..    +.+|+.|++.+|.++. ++..   .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccch-hhhh---cccccccc
Confidence            578999999998875 332   3578999999999998 77753    4689999999998873 3321   24699999


Q ss_pred             CcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCC
Q 039739          367 LSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS  446 (628)
Q Consensus       367 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  446 (628)
                      +++|.+. .++.  +..+++|+.|+++++.+....    ...+.+..+.+..+...  ....+..++.++.+.+..+...
T Consensus       105 L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cccc--hhhhccceeeccccccccccc----cccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            9999987 6765  345899999999988775422    23466778887766554  2345677889999999988765


Q ss_pred             CccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccc
Q 039739          447 GKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFF  526 (628)
Q Consensus       447 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  526 (628)
                      .. +   ......+.+....+.+. .. ..+..++.|+.+++++|.... .+.  ...++..+.+..+.+... +..   
T Consensus       176 ~~-~---~~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~-~~~--~~~~l~~~~~~~~~~~~~-~~~---  242 (353)
T d1jl5a_         176 KL-P---DLPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTDL-PEL---  242 (353)
T ss_dssp             SC-C---CCCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSCC-CCC---
T ss_pred             cc-c---ccccccccccccccccc-cc-ccccccccccccccccccccc-ccc--cccccccccccccccccc-ccc---
Confidence            32 2   12234456666666554 22 246788999999999987663 332  245566777777666421 111   


Q ss_pred             cCCCcc--------------------EEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEEECCC
Q 039739          527 NSYSLV--------------------TLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSN  586 (628)
Q Consensus       527 ~~~~L~--------------------~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  586 (628)
                       ..++.                    ..++..+.+.    .....+++|++|++++|+++ .+|..   +++|++|++++
T Consensus       243 -~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~  313 (353)
T d1jl5a_         243 -PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASF  313 (353)
T ss_dssp             -CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             -cccccccccccccccccccccchhcccccccCccc----cccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCC
Confidence             12233                    3333333332    12234689999999999999 67754   57899999999


Q ss_pred             Ccccccccccccccc-ccccccCCccccc
Q 039739          587 NSLHGSIPLCLDNTT-LHESYNNSSSLDK  614 (628)
Q Consensus       587 ~~~~~~ip~~~~~~~-~~~~~~~~~~~~~  614 (628)
                      |+++ .||+.+.+++ ++..+|+..+++.
T Consensus       314 N~L~-~l~~~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         314 NHLA-EVPELPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             SCCS-CCCCCCTTCCEEECCSSCCSSCCC
T ss_pred             CcCC-ccccccCCCCEEECcCCcCCCCCc
Confidence            9998 8999999988 6666777777763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.9e-16  Score=148.56  Aligned_cols=184  Identities=23%  Similarity=0.229  Sum_probs=107.7

Q ss_pred             cCCCccEEEccCCcccCcCchhHHhcCccCcEEEeecCCCCCCCCcccccCCccCEEEccCC-cCCcccchhhhhhCCCc
Q 039739          260 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFQLPIHSHKRLGMLDISNN-NFRGHIPVEIGDVLPSL  338 (628)
Q Consensus       260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~L  338 (628)
                      ...+|++|+++++.+.+.....++..+++|++|.+++|.+.+.....+..+++|++|++++| .+++.....+...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            44578899998888776666666788888888888888776655566677788888888876 34422222334456777


Q ss_pred             cEEEccccc-CCCc-ccccc-cCCCCccEEECcCCc--ccCccchhhhcCCccccEEEccCCc-cCCcccccccCCCCCc
Q 039739          339 FSLNISMNA-LDGS-IPSSF-GNMKFLQILDLSNNH--LTGEIPEHLVVGCVNLESLALSNNS-LEGHMFSRNFNLTNLR  412 (628)
Q Consensus       339 ~~L~L~~~~-~~~~-~~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~  412 (628)
                      ++|++++|. ++.. +...+ ..+++|+.|+++++.  +++.....++.++++|++|++++|. +++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            777777764 3321 11112 224567777776642  2222222333446666666666543 4444445555566666


Q ss_pred             EEEccCc-cCcCcccccccCCCcccEEEccCC
Q 039739          413 WLQLEGN-HFVGEIPQSLSKCFVLEGLFLNNN  443 (628)
Q Consensus       413 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~  443 (628)
                      +|++++| .+++.....+.++++|++|++++|
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6666664 233333334445555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.5e-15  Score=135.15  Aligned_cols=164  Identities=23%  Similarity=0.366  Sum_probs=89.0

Q ss_pred             CCCCcEEecCCCCCCCcchhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCC
Q 039739           30 FTNLEYLTLDSSSLHISLLQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPS  109 (628)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  109 (628)
                      +..|++|++++|.+.+.  ..+.. +++|++|++++|.+.+. +  .+.++++|++|++++|  .+.+ ++ .+.. +++
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~-l~~L~~L~L~~n~i~~l-~--~~~~l~~L~~L~l~~n--~i~~-l~-~l~~-l~~  113 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQY-LPNVTKLFLNGNKLTDI-K--PLANLKNLGWLFLDEN--KVKD-LS-SLKD-LKK  113 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGG-CTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSS--CCCC-GG-GGTT-CTT
T ss_pred             hcCccEEECcCCCCCCc--hhHhh-CCCCCEEeCCCccccCc-c--ccccCccccccccccc--cccc-cc-cccc-ccc
Confidence            44566666666655432  22444 66666666666655532 1  2455666666666665  2222 22 3444 666


Q ss_pred             ccEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccE
Q 039739          110 LKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE  189 (628)
Q Consensus       110 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~  189 (628)
                      |++|+++++....    ++  .+..+++++.+++++|.+.+  +..+..+++|+++++++|++. .++.  +.++++|++
T Consensus       114 L~~L~l~~~~~~~----~~--~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~~--l~~l~~L~~  182 (210)
T d1h6ta2         114 LKSLSLEHNGISD----IN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQN  182 (210)
T ss_dssp             CCEEECTTSCCCC----CG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred             ccccccccccccc----cc--cccccccccccccccccccc--ccccccccccccccccccccc-cccc--ccCCCCCCE
Confidence            6666666655533    22  45566666666666665542  234555666666666666665 3433  556666666


Q ss_pred             EEcccCeeeeecCCCCcCCCCcccEEecc
Q 039739          190 LYLSNNHFQIPISLEPFFNHSRLKSFYAD  218 (628)
Q Consensus       190 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  218 (628)
                      |++++|.++. +  ..+.++++|++|+++
T Consensus       183 L~Ls~N~i~~-l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         183 LYLSKNHISD-L--RALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCB-C--GGGTTCTTCSEEEEE
T ss_pred             EECCCCCCCC-C--hhhcCCCCCCEEEcc
Confidence            6666665542 1  235566666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1e-14  Score=129.90  Aligned_cols=160  Identities=25%  Similarity=0.309  Sum_probs=83.4

Q ss_pred             ccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEccCCcCCCccCccccCCCCcceEEC
Q 039739          385 VNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGKIPRWLGNLTRLQHIMM  464 (628)
Q Consensus       385 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  464 (628)
                      +++++|+++++.+..  ...+..+++|++|++++|.+++..  .+.++++|++|++++|.+... + .+.+++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-ccccccccccccc
Confidence            344444444444432  122334444555555554444221  144445555555555444321 1 2445555555555


Q ss_pred             CCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCc
Q 039739          465 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGN  544 (628)
Q Consensus       465 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  544 (628)
                      +++.....  ..+..+++|+.|++++|++. ..+.....++++.|++.+|++++ ++.  ++++++|+.|++++|++++ 
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~l~~-l~~--l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVTD-LKP--LANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhc-ccccccccccccccccccccccC-Ccc--ccCCCCCCEEECCCCCCCC-
Confidence            55544422  22445555555555555544 22333335555555555555542 322  7788999999999999875 


Q ss_pred             cchhhcCCCCCcEE
Q 039739          545 ISDWVDGLSQLSHL  558 (628)
Q Consensus       545 ~~~~~~~l~~L~~L  558 (628)
                      ++ .++.+++|++|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            33 47888888876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=3.1e-15  Score=132.54  Aligned_cols=128  Identities=22%  Similarity=0.300  Sum_probs=86.1

Q ss_pred             cEEECcCCcccCccchhhhcCCccccEEEccCCccCC-cccccccCCCCCcEEEccCccCcCcccccccCCCcccEEEcc
Q 039739          363 QILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEG-HMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVLEGLFLN  441 (628)
Q Consensus       363 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  441 (628)
                      +.++.++++++ .+|..+   .+.+++|++++|.++. .....+.++++|+.|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35566666655 555543   3566667777776654 334455567777777777777766666666777777777777


Q ss_pred             CCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCc
Q 039739          442 NNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  494 (628)
Q Consensus       442 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  494 (628)
                      +|.+....+.+|.++++|++|++++|.+....+..|..+++|++|++++|++.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            77776666666777777777777777777666666777777777777777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=8.1e-15  Score=129.76  Aligned_cols=108  Identities=26%  Similarity=0.364  Sum_probs=52.1

Q ss_pred             cccEEEccCCcCCC-ccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEec
Q 039739          434 VLEGLFLNNNSLSG-KIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHL  511 (628)
Q Consensus       434 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l  511 (628)
                      ++++|++++|.++. ..+..|.++++|++|++++|.+....+..+..+++|++|++++|++....+..|. ++.|+.|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            45555555555543 2233445555555555555555555555555555555555555555533333322 333333333


Q ss_pred             CCCcCcCCCCccccccCCCccEEECCCcccC
Q 039739          512 SKNMLHGQLKRGTFFNSYSLVTLDLSYNRLN  542 (628)
Q Consensus       512 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  542 (628)
                      ++|+++ .+++++|..+++|++|+|++|.+.
T Consensus       110 ~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQIS-CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCC-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcccc-ccCHHHhcCCcccccccccccccc
Confidence            333332 333333555555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.2e-14  Score=141.92  Aligned_cols=110  Identities=14%  Similarity=0.074  Sum_probs=59.0

Q ss_pred             chhhhcccCCCCcEEecCCCCCCCcchhHhhcc---CCCCceEecccccccccccCCCccccCccceeecccchhhcCcc
Q 039739           22 TATQELHNFTNLEYLTLDSSSLHISLLQSIASI---FPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTS   98 (628)
Q Consensus        22 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~   98 (628)
                      .+...+.....|++|+|++|.++......++..   .++|+.|+++++........               ..  .....
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~---------------~~--~~~~~   84 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE---------------IP--EALRL   84 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGG---------------SH--HHHHH
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccc---------------cc--hHHHH
Confidence            355567777888888888888776666665542   34555555554322110000               00  00112


Q ss_pred             hhhhhhccCCCccEEeeccccCCCCCCccccccccCCCCCcEEEccCCccc
Q 039739           99 FLQIIGESMPSLKYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLR  149 (628)
Q Consensus        99 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  149 (628)
                      +...+.. +++|++|++++|.++..++....+.+..+++|++|++++|.+.
T Consensus        85 l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          85 LLQALLK-CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             HHHHHTT-CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHHHHhh-CCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            2333444 6667777777766644333333334556667777777766553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=117.24  Aligned_cols=127  Identities=20%  Similarity=0.159  Sum_probs=77.6

Q ss_pred             ccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCcc
Q 039739          453 LGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLV  532 (628)
Q Consensus       453 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  532 (628)
                      +.++..+++|++++|+++.. +..+..+++|+.|++++|++.. .+....+++|+.|++++|++. .+++..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cCCcccCcchhhhhccccccc-CCCccccccccccc
Confidence            34445556666666655532 3334555666666666665552 233333455555555555553 44444456678888


Q ss_pred             EEECCCcccCCccc-hhhcCCCCCcEEECCCCcCCccCCc----cccCCCCCcEEE
Q 039739          533 TLDLSYNRLNGNIS-DWVDGLSQLSHLILGHNNLEGEVPV----QLCKLNQLQLLD  583 (628)
Q Consensus       533 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~  583 (628)
                      .|++++|++..... ..+..+++|+.|++++|+++ ..|.    .+..+|+|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            88888888774322 45777888888888888887 4443    467788888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=7.5e-14  Score=136.28  Aligned_cols=245  Identities=19%  Similarity=0.184  Sum_probs=136.3

Q ss_pred             CCCccEEEcccccCCCc----ccccccCCCCccEEECcCCcccCc---cch------hhhcCCccccEEEccCCccCCcc
Q 039739          335 LPSLFSLNISMNALDGS----IPSSFGNMKFLQILDLSNNHLTGE---IPE------HLVVGCVNLESLALSNNSLEGHM  401 (628)
Q Consensus       335 ~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---~~~------~~~~~~~~L~~L~l~~~~l~~~~  401 (628)
                      ...++.|++++|.+...    +...+...++|+.++++++.....   .+.      ..+..+++|++|++++|.+....
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            56788888888876532    333456677888888877643311   111      11234567777777777665543


Q ss_pred             cc----cccCCCCCcEEEccCccCcCcccc-------------cccCCCcccEEEccCCcCCCc----cCccccCCCCcc
Q 039739          402 FS----RNFNLTNLRWLQLEGNHFVGEIPQ-------------SLSKCFVLEGLFLNNNSLSGK----IPRWLGNLTRLQ  460 (628)
Q Consensus       402 ~~----~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~  460 (628)
                      ..    .+...++|+.|++++|.+......             .....+.|+.+.++++.+...    +...+..++.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence            22    223456777777777665321110             112344555555555544322    112233445555


Q ss_pred             eEECCCCcCCCC-----CcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcCcCCCCccccccCCCccEEE
Q 039739          461 HIMMPKNHLEGP-----IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLD  535 (628)
Q Consensus       461 ~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  535 (628)
                      .|++++|.+...     ....+..+++|+.|++++|+++....                   ..+... +..+++|++|+
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~-------------------~~L~~~-l~~~~~L~~L~  249 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-------------------SALAIA-LKSWPNLRELG  249 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-------------------HHHHHH-GGGCTTCCEEE
T ss_pred             ccccccccccccccccchhhhhcchhhhccccccccccccccc-------------------cccccc-ccccccchhhh
Confidence            555555554321     11223344455555555444331100                   012222 56788999999


Q ss_pred             CCCcccCCccchh----hcC--CCCCcEEECCCCcCCccC----Ccccc-CCCCCcEEECCCCccccccccccccc
Q 039739          536 LSYNRLNGNISDW----VDG--LSQLSHLILGHNNLEGEV----PVQLC-KLNQLQLLDLSNNSLHGSIPLCLDNT  600 (628)
Q Consensus       536 l~~~~~~~~~~~~----~~~--l~~L~~L~l~~~~i~~~~----~~~l~-~l~~L~~L~l~~~~~~~~ip~~~~~~  600 (628)
                      +++|.+++.....    +..  .+.|++|++++|+|+...    ...+. ++++|++|++++|.+. .-.+...++
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~-~~~~~~~~l  324 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS-EEDDVVDEI  324 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC-TTSHHHHHH
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC-CcchHHHHH
Confidence            9999987553333    332  467999999999987543    33342 5788999999999987 344444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=111.23  Aligned_cols=129  Identities=19%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             ccCCCCccEEECcCCcccCccchhhhcCCccccEEEccCCccCCcccccccCCCCCcEEEccCccCcCcccccccCCCcc
Q 039739          356 FGNMKFLQILDLSNNHLTGEIPEHLVVGCVNLESLALSNNSLEGHMFSRNFNLTNLRWLQLEGNHFVGEIPQSLSKCFVL  435 (628)
Q Consensus       356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  435 (628)
                      +.++.++++|++++|+++ .++. .+..+++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            445566777777777776 5543 334567777777777776542  345567777777777777764444445567777


Q ss_pred             cEEEccCCcCCCccC-ccccCCCCcceEECCCCcCCCCC---cccccCCCCCCEEEc
Q 039739          436 EGLFLNNNSLSGKIP-RWLGNLTRLQHIMMPKNHLEGPI---PVEFCQLDWLQILDI  488 (628)
Q Consensus       436 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l  488 (628)
                      ++|++++|.+..... ..+..+++|++|++++|.+....   +..+..+|+|+.||-
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            777777777653321 35666777777777777765322   123566777777763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=8e-12  Score=100.64  Aligned_cols=101  Identities=28%  Similarity=0.333  Sum_probs=49.1

Q ss_pred             EEEccCCcCCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739          437 GLFLNNNSLSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSVEQVHLSKNML  516 (628)
Q Consensus       437 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  516 (628)
                      +|++++|.++ .++ .+.+++.|++|++++|.+. ..|..+..+++|+.|++++|+++.                     
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~---------------------   57 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---------------------   57 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---------------------
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc---------------------
Confidence            4444444444 222 2444555555555555554 233344555555555555554441                     


Q ss_pred             cCCCCccccccCCCccEEECCCcccCCcc-chhhcCCCCCcEEECCCCcCC
Q 039739          517 HGQLKRGTFFNSYSLVTLDLSYNRLNGNI-SDWVDGLSQLSHLILGHNNLE  566 (628)
Q Consensus       517 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~  566 (628)
                         ++ + +..+++|+.|++++|++++.. ...+..+++|+.|++++|+++
T Consensus        58 ---l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          58 ---VD-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ---CG-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ---cC-c-cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence               11 1 444555555555555555332 134555566666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=3.8e-12  Score=102.55  Aligned_cols=103  Identities=28%  Similarity=0.435  Sum_probs=71.3

Q ss_pred             cEEeeccccCCCCCCccccccccCCCCCcEEEccCCcccccCchhhhcCCCCCEEEccccccccccCCCCCCCCCcccEE
Q 039739          111 KYLSLFGSILGTNSSRILDRGLCSLVHLQVLNIAYNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL  190 (628)
Q Consensus       111 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L  190 (628)
                      |+|+++++.++.    ++  .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .++.  +..+++|+++
T Consensus         1 R~L~Ls~n~l~~----l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV----LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS----CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred             CEEEcCCCCCCC----Cc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeE
Confidence            467777777654    43  4677777777777777776 45666777777777777777776 5553  6777777777


Q ss_pred             EcccCeeeeecCCCCcCCCCcccEEeccCCccc
Q 039739          191 YLSNNHFQIPISLEPFFNHSRLKSFYADNNEIN  223 (628)
Q Consensus       191 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (628)
                      ++++|.+........+..+++|+.+++++|++.
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            777777764333445667777777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=6e-13  Score=117.49  Aligned_cols=133  Identities=23%  Similarity=0.300  Sum_probs=85.0

Q ss_pred             CccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEccCCcCcCCCCCCCC-CCcccEEecCCCcCcCCCCccccccC
Q 039739          450 PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSVEQVHLSKNMLHGQLKRGTFFNS  528 (628)
Q Consensus       450 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~  528 (628)
                      +..+..+++|++|++++|.+... + .+..+++|+.|++++|++.. .+.... +++|+.|++++|+++ .++ . +..+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~-~l~-~-~~~l  114 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SLS-G-IEKL  114 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECC-CHH-H-HHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccccccccc-ccc-c-cccc
Confidence            34555566666666666666533 2 35666666677776666652 232222 445666777766664 332 2 6677


Q ss_pred             CCccEEECCCcccCCccc-hhhcCCCCCcEEECCCCcCCccCCcc----------ccCCCCCcEEECCCCccc
Q 039739          529 YSLVTLDLSYNRLNGNIS-DWVDGLSQLSHLILGHNNLEGEVPVQ----------LCKLNQLQLLDLSNNSLH  590 (628)
Q Consensus       529 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~----------l~~l~~L~~L~l~~~~~~  590 (628)
                      ++|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+|+|+.||  +.+++
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            888899999888875432 46788888999999998876433322          56788888876  55554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.3e-10  Score=95.21  Aligned_cols=87  Identities=23%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             CCcccEEecCCCcCcCCCCccccccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCccccCCCCCcEE
Q 039739          503 PLSVEQVHLSKNMLHGQLKRGTFFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLL  582 (628)
Q Consensus       503 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  582 (628)
                      .++++.|++.+++....++..+|.++++|+.|++++|+++...+..|..+++|++|+|++|+++ .+|.......+|++|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcccccccc
Confidence            3444555554443223566666888888999999988888777788888889999999999888 555544445578899


Q ss_pred             ECCCCccc
Q 039739          583 DLSNNSLH  590 (628)
Q Consensus       583 ~l~~~~~~  590 (628)
                      +|++|++.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            99888874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.08  E-value=8e-12  Score=110.11  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             hhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCcchhhhhhccCCCccEEeeccccCCCCCCcc
Q 039739           48 LQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNTSFLQIIGESMPSLKYLSLFGSILGTNSSRI  127 (628)
Q Consensus        48 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  127 (628)
                      ...+.. +++|++|++++|.+... +  .+.++++|++|++++|.+  . .++..... +++|++|++++|.+..    +
T Consensus        41 ~~sl~~-L~~L~~L~Ls~n~I~~i-~--~l~~l~~L~~L~Ls~N~i--~-~i~~~~~~-~~~L~~L~l~~N~i~~----l  108 (198)
T d1m9la_          41 DATLST-LKACKHLALSTNNIEKI-S--SLSGMENLRILSLGRNLI--K-KIENLDAV-ADTLEELWISYNQIAS----L  108 (198)
T ss_dssp             HHHHHH-TTTCCEEECSEEEESCC-C--CHHHHTTCCEEECCEEEE--C-SCSSHHHH-HHHCCEEECSEEECCC----H
T ss_pred             hhHHhc-ccccceeECcccCCCCc-c--cccCCccccChhhccccc--c-cccccccc-cccccccccccccccc----c
Confidence            455666 77777777777766642 2  466777777777777632  2 22222222 4567777777776654    4


Q ss_pred             ccccccCCCCCcEEEccCCcccccC-chhhhcCCCCCEEEccccccccccCCC---------CCCCCCcccEEE
Q 039739          128 LDRGLCSLVHLQVLNIAYNDLRGSL-PWCLANMTSLRILDVSSNQLTGSISSS---------PLVHLTSIEELY  191 (628)
Q Consensus       128 ~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~---------~l~~l~~L~~L~  191 (628)
                      +  .+..+++|++|++++|.+.... ...+..+++|++|++++|++....+..         .+..+++|+.||
T Consensus       109 ~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         109 S--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             H--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             c--cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            2  4666777777777777766321 135667777777777777765322221         134567777775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.8e-10  Score=95.59  Aligned_cols=105  Identities=23%  Similarity=0.183  Sum_probs=58.3

Q ss_pred             CcEEEccCccCcCcccccccCCCcccEEEccCCc-CCCccCccccCCCCcceEECCCCcCCCCCcccccCCCCCCEEEcc
Q 039739          411 LRWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-LSGKIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS  489 (628)
Q Consensus       411 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  489 (628)
                      .++++..++... ..|..+..+++|++|++.++. +....+.+|.++++|+.|++++|++....+..|..+++|++|+++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555444 334455556666666665443 444444556666666666666666665556666666666666666


Q ss_pred             CCcCcCCCCCCCCCCcccEEecCCCcC
Q 039739          490 DNNISGSLPSCFHPLSVEQVHLSKNML  516 (628)
Q Consensus       490 ~~~~~~~~~~~~~~~~L~~L~l~~n~~  516 (628)
                      +|++....+..+....++.|++++|++
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCCcccChhhhccccccccccCCCcc
Confidence            666664333344333444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.5e-07  Score=74.38  Aligned_cols=88  Identities=23%  Similarity=0.198  Sum_probs=55.9

Q ss_pred             hhcccCCCCcEEecCCCCCCCcc--hhHhhccCCCCceEecccccccccccCCCccccCccceeecccchhhcCc----c
Q 039739           25 QELHNFTNLEYLTLDSSSLHISL--LQSIASIFPSLKNLSMIGCEVNGLVRGQGFPHFKSLEHLDMEGALIALNT----S   98 (628)
Q Consensus        25 ~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~   98 (628)
                      ..+..+++|++|++++|.++...  ...+.. +++|+.|++++|.+...... .+.+...|+.|++++|++....    .
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~-l~~L~~L~Ls~N~i~~l~~l-~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSEREL-DKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHH-STTCCCCCCTTSCCCCGGGH-HHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhh-CCcccccccccCccccchhh-hhhhccccceeecCCCCcCcCcccchh
Confidence            34456888888888888887532  344555 88888888888887754332 2233456888888888542211    1


Q ss_pred             hhhhhhccCCCccEEe
Q 039739           99 FLQIIGESMPSLKYLS  114 (628)
Q Consensus        99 ~~~~~~~~~~~L~~L~  114 (628)
                      ....+.+.+|+|++||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence            1123333389999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=7.9e-07  Score=75.00  Aligned_cols=40  Identities=10%  Similarity=0.207  Sum_probs=20.0

Q ss_pred             ccCCCCcEEecCCC-CCCCcchhHhhcc---CCCCceEeccccc
Q 039739           28 HNFTNLEYLTLDSS-SLHISLLQSIASI---FPSLKNLSMIGCE   67 (628)
Q Consensus        28 ~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~   67 (628)
                      .+.+.|++|+|+++ .++......++..   .++|++|++++|.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~   55 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA   55 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc
Confidence            34567777777763 4655444444331   2334444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=3.6e-07  Score=77.19  Aligned_cols=67  Identities=15%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CCCCCCEEeCCCC-CCCC--ccchhhhcccCCCCcEEecCCCCCCCcchhHhhcc---CCCCceEeccccccc
Q 039739            3 SFPSLNTLYLSSN-NFTD--IATATQELHNFTNLEYLTLDSSSLHISLLQSIASI---FPSLKNLSMIGCEVN   69 (628)
Q Consensus         3 ~l~~L~~L~l~~~-~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~   69 (628)
                      +.+.|++|+|+++ .+..  +..+..++...++|++|++++|.+++.....++..   .+.|++|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            5689999999985 4533  23466778889999999999999986555555441   344555555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.85  E-value=3e-06  Score=71.36  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=13.9

Q ss_pred             cccCCCCcEEecCC-CCCCCcchhHhh
Q 039739           27 LHNFTNLEYLTLDS-SSLHISLLQSIA   52 (628)
Q Consensus        27 ~~~~~~L~~L~l~~-~~~~~~~~~~l~   52 (628)
                      ..+.+.|++|++++ +.++......++
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~   39 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACA   39 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHH
Confidence            34456666666665 345544444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.5e-06  Score=71.46  Aligned_cols=59  Identities=24%  Similarity=0.095  Sum_probs=40.8

Q ss_pred             cccCCCccEEECCCcccCCccchhhcCCCCCcEEECCCCcCCccCCc-------cccCCCCCcEEE
Q 039739          525 FFNSYSLVTLDLSYNRLNGNISDWVDGLSQLSHLILGHNNLEGEVPV-------QLCKLNQLQLLD  583 (628)
Q Consensus       525 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-------~l~~l~~L~~L~  583 (628)
                      +..+++|+.|++++|.+++..+-.+.....|+.|++++|++.....+       .+..+|+|+.||
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            56678888888888888754443444455788888888888754332       256678888776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.72  E-value=6.9e-06  Score=69.09  Aligned_cols=51  Identities=14%  Similarity=0.197  Sum_probs=27.7

Q ss_pred             CCCCCCEEeCCCC-CCCC--ccchhhhcccCCCCcEEecCCCCCCCcchhHhhc
Q 039739            3 SFPSLNTLYLSSN-NFTD--IATATQELHNFTNLEYLTLDSSSLHISLLQSIAS   53 (628)
Q Consensus         3 ~l~~L~~L~l~~~-~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~   53 (628)
                      +.+.|++|+++++ .++.  +..+..++..+++|++|++++|.++......++.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~   68 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE   68 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHH
Confidence            3456666666653 3422  1224455555666666666666666555555554